Citrus Sinensis ID: 010856

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHcccccccEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccccccccEEEEccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccEEccccccccccccHHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccHHHHHHHHcccccccEEEcccccEEEEEEEccccEEEEEEEccccccccccHHHHHHHHHcccccccccEEEccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccccccHHHHHHHHHHccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccEEEccccccHHHccHHHcccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccHHcEEEccccEEEEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEcccHHHHcc
Coil and Loop (DISEMBL)
MSNCKSLTLIylsnnpldgilpktsvgnlshslEDFRMyncnisggipeeisnltnstivnlggnklngsipITLSKLQKlqglglednklegsipddiCHLAELYRldldgnklsgslpacfsnltslrivslgsnkltsvpltfWNLKDIlnlnfssnfltsplpleigNLKVLIGIDfsmnnfsgvipteigglknlEYLFLGYnrlqgsipdsfgdlISLKFLNlsnnnlsgaipaslEKLSYLENLNLSFnklegeiprggsfgnfsaesfegnellcgspnlqvppcktsihhtswKNSLLLRIVLPLSTTFMIVVILLILRYqqrgkrpsndanmplvaTWRTFSYLELFRatdefsennligkggfgsvykarlgdRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLfhhssasaSASLVSsltlsrpakgggfrgcVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Flexible Loop (DISEMBL)
MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYqqrgkrpsndanmplVATWRTFSYLELFRATDefsennligkggFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Low Complexity Region (SEG)
MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSklqklqglglEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIslkflnlsnnnlsGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHssasasaslvssltlsRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Disordered region (IsUnstruct)
*****SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQR*******ANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSA*****LVSSLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILL*
Disordered Region (DISOPRED)
MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN********************LRIVLPLSTTFMIVVILLILR********************RTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Disordered Region (DISEMBL)
MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Disordered Region (DISPRO)
*SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKR******MPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	499	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.859	0.424	0.386	3e-64
C0LGT6	1031	LRR receptor-like serine/	no	no	0.855	0.414	0.362	2e-62
Q9SD62	1025	Putative receptor-like pr	no	no	0.841	0.409	0.385	2e-56
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.753	0.383	0.370	8e-55
Q9FL28	1173	LRR receptor-like serine/	no	no	0.829	0.352	0.340	6e-52
Q42371	976	LRR receptor-like serine/	no	no	0.809	0.413	0.322	5e-49
Q9LJF3	1164	Receptor-like protein kin	no	no	0.821	0.352	0.305	2e-47
Q6XAT2	967	LRR receptor-like serine/	no	no	0.831	0.429	0.322	3e-47
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.845	0.403	0.299	8e-47
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.833	0.348	0.313	2e-46

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  246 bits (628), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 171/442 (38%), Positives = 238/442 (53%), Gaps = 13/442 (2%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NC  L  + +  N L G LP  S+ NLS  L    +    ISG IP +I NL N   +
Sbjct: 332 LTNCTQLETLGIGRNRLGGDLP-ISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKL 390

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  N L+G +P +L KL  L+ L L  N+L G IP  I ++  L  LDL  N   G +P
Sbjct: 391 ILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVP 450

Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
               N + L  + +G NKL  ++PL    ++ +L L+ S N L   LP +IG L+ L  +
Sbjct: 451 TSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTL 510

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
               N  SG +P  +G    +E LFL  N   G IPD  G L+ +K ++LSNN+LSG+IP
Sbjct: 511 SLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIP 569

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSIH 298
                 S LE LNLSFN LEG++P  G F N +  S  GN  LCG     Q+ PC +   
Sbjct: 570 EYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQAP 629

Query: 299 HTSWKN-SLLLRIVLPLST-------TFMIVVILLILRYQQRGKRPSNDANMPLVATWRT 350
               K+ S L ++V+ +S         FM  V L+ LR +++ K  +N     L      
Sbjct: 630 SVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNPTPSTLEVLHEK 689

Query: 351 FSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVKVFNLQCGRAFESFDVECE 409
            SY +L  AT+ FS +N++G G FG+VYKA  L ++  VAVKV N+Q   A +SF  ECE
Sbjct: 690 ISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRRGAMKSFMAECE 749

Query: 410 MMKNIRHRNLIKILHGVAVITF 431
            +K+IRHRNL+K+L   + I F
Sbjct: 750 SLKDIRHRNLVKLLTACSSIDF 771

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  240 bits (612), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 239/450 (53%), Gaps = 23/450 (5%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NC  L  + +  N L G LP  S+ NLS +L    +    ISG IP +I NL +   +
Sbjct: 340 VANCTQLEYLDVGYNRLGGELP-ASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +L  N L+G +P++  KL  LQ + L  N + G IP    ++  L +L L+ N   G +P
Sbjct: 399 SLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIP 458

Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
                   L  + + +N+L  ++P     +  +  ++ S+NFLT   P E+G L++L+G+
Sbjct: 459 QSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGL 518

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
             S N  SG +P  IGG  ++E+LF+  N   G+IPD    L+SLK ++ SNNNLSG IP
Sbjct: 519 GASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIP 577

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSIH 298
             L  L  L NLNLS NK EG +P  G F N +A S  GN  +CG    +Q+ PC     
Sbjct: 578 RYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQAS 637

Query: 299 HT-----SWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKR-PSNDANMPLVATWRTF- 351
                  S +  ++  I + +++  +I+++  +  + +R K+  ++D N     T   F 
Sbjct: 638 PRKRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFH 697

Query: 352 ---SYLELFRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVE 407
              SY EL  AT  FS  NLIG G FG+V+K  LG   + VAVKV NL    A +SF  E
Sbjct: 698 EKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAE 757

Query: 408 CEMMKNIRHRNLIKILHGVAVITFTVCLCL 437
           CE  K IRHRNL+K++        TVC  L
Sbjct: 758 CETFKGIRHRNLVKLI--------TVCSSL 779

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 168/436 (38%), Positives = 244/436 (55%), Gaps = 16/436 (3%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NC  L  + +  N L G LP   + NLS  L +  +    ISG IP  I NL +   +
Sbjct: 348 LTNCSQLQYLNVGFNKLGGQLP-VFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTL 406

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +LG N L G +P +L +L +L+ + L  N L G IP  + +++ L  L L  N   GS+P
Sbjct: 407 DLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIP 466

Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           +   + + L  ++LG+NKL  S+P     L  ++ LN S N L  PL  +IG LK L+ +
Sbjct: 467 SSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLAL 526

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N  SG IP  +    +LE+L L  N   G IPD  G L  L+FL+LS NNLSG IP
Sbjct: 527 DVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRFLDLSKNNLSGTIP 585

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSI- 297
             +   S L+NLNLS N  +G +P  G F N SA S  GN  LCG  P+LQ+ PC   + 
Sbjct: 586 EYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPCSVELP 645

Query: 298 -HHTSWKNSLLLRIVLPLSTTFMIVVILLILR-YQQRGK--RPSNDAN----MPLVATWR 349
             H+S +  + + +   ++   ++ + ++ L  Y+ R K  R +N+ N     P+ + + 
Sbjct: 646 RRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRSFSPVKSFYE 705

Query: 350 TFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGR-AFESFDVE 407
             SY EL++ T  FS +NLIG G FG+V+K  LG + + VA+KV NL C R A +SF  E
Sbjct: 706 KISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNL-CKRGAAKSFIAE 764

Query: 408 CEMMKNIRHRNLIKIL 423
           CE +  IRHRNL+K++
Sbjct: 765 CEALGGIRHRNLVKLV 780

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  215 bits (547), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 210/391 (53%), Gaps = 15/391 (3%)

Query: 45  GGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAE 104
           G IP E+  L+    V L  N L G IP+ L  + +L  L +  N L GSIPD   +L++
Sbjct: 335 GPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQ 394

Query: 105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT-SVPL-TFWNLKDI-LNLNFSSNF 161
           L RL L GN LSG++P       +L I+ L  N LT ++P+    NL+++ L LN SSN 
Sbjct: 395 LRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNH 454

Query: 162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
           L+ P+PLE+  + +++ +D S N  SG IP ++G    LE+L L  N    ++P S G L
Sbjct: 455 LSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQL 514

Query: 222 ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 281
             LK L++S N L+GAIP S ++ S L++LN SFN L G +   GSF   + ESF G+ L
Sbjct: 515 PYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESFLGDSL 574

Query: 282 LCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVI--------LLILRYQQRG 333
           LCGS        K   + +     LL  I  P+   F   ++        L +   ++  
Sbjct: 575 LCGSIKGMQACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLVQRSRFGKNLTVYAKEEVE 634

Query: 334 KRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVF 393
                + N P    +   SY +L  AT  F+ ++LIG G FG VYK  L +  +VAVKV 
Sbjct: 635 DEEKQNQNDP---KYPRISYQQLIAATGGFNASSLIGSGRFGHVYKGVLRNNTKVAVKVL 691

Query: 394 NLQCGRAFE-SFDVECEMMKNIRHRNLIKIL 423
           + +    F  SF  EC+++K  RHRNLI+I+
Sbjct: 692 DPKTALEFSGSFKRECQILKRTRHRNLIRII 722

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  205 bits (522), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 232/487 (47%), Gaps = 73/487 (14%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
           NC +L  + +++N L G L K  +G L   L   ++   +++G IP EI NL +  I+ L
Sbjct: 453 NCSNLETLSVADNNLTGTL-KPLIGKL-QKLRILQVSYNSLTGPIPREIGNLKDLNILYL 510

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC 122
             N   G IP  +S L  LQGL +  N LEG IP+++  +  L  LDL  NK SG +PA 
Sbjct: 511 HSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPAL 570

Query: 123 FSNLTSLRIVSLGSNKLT-SVP-----LTFWNLKDI---------------------LNL 155
           FS L SL  +SL  NK   S+P     L+  N  DI                     L L
Sbjct: 571 FSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query: 156 NFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 215
           NFS+N LT  +P E+G L+++  ID S N FSG IP  +   KN+  L    N L G IP
Sbjct: 631 NFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIP 690

Query: 216 D-------------------------SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLEN 250
           D                         SFG++  L  L+LS+NNL+G IP SL  LS L++
Sbjct: 691 DEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKH 750

Query: 251 LNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPC--KTSIHHTSWKNSLLL 308
           L L+ N L+G +P  G F N +A    GN  LCGS    + PC  K    H S +  ++L
Sbjct: 751 LKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKK-PLKPCTIKQKSSHFSKRTRVIL 809

Query: 309 RIV----------LPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELFR 358
            I+          L +            +        P  D+ + L    + F   EL +
Sbjct: 810 IILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKL----KRFEPKELEQ 865

Query: 359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRH 416
           ATD F+  N+IG     +VYK +L D   +AVKV NL+     + + F  E + +  ++H
Sbjct: 866 ATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKWFYTEAKTLSQLKH 925

Query: 417 RNLIKIL 423
           RNL+KIL
Sbjct: 926 RNLVKIL 932

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  195 bits (496), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 225/449 (50%), Gaps = 45/449 (10%)

Query: 12  LSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSI 71
           L  N L G +P  SV  L  +L    +    +SG IP  + NLT +  + L  NKL GSI
Sbjct: 266 LQGNQLSGKIP--SVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSI 323

Query: 72  PITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRI 131
           P  L  + KL  L L DN L G IP ++  L +L+ L++  N L G +P   S+ T+L  
Sbjct: 324 PPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNS 383

Query: 132 VSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI 190
           +++  NK + ++P  F  L+ +  LN SSN +  P+P+E+  +  L  +D S N  +G+I
Sbjct: 384 LNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGII 443

Query: 191 PTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS---- 246
           P+ +G L++L  + L  N + G +P  FG+L S+  ++LSNN++SG IP  L +L     
Sbjct: 444 PSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIIL 503

Query: 247 -YLEN------------------LNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN 287
             LEN                  LN+S N L G+IP+  +F  FS +SF GN  LCGS  
Sbjct: 504 LRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGS-- 561

Query: 288 LQVPPCKTSIH--HTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLV 345
               PC  S      S   + +L I +      +I++++LI   +     P  D ++   
Sbjct: 562 WLNSPCHDSRRTVRVSISRAAILGIAI---GGLVILLMVLIAACRPHNPPPFLDGSLDKP 618

Query: 346 ATWRT------------FSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVF 393
            T+ T              Y ++ R T+  SE  +IG G   +VYK  L +   VA+K  
Sbjct: 619 VTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKRL 678

Query: 394 NLQCGRAFESFDVECEMMKNIRHRNLIKI 422
                ++ + F+ E EM+ +I+HRNL+ +
Sbjct: 679 YSHNPQSMKQFETELEMLSSIKHRNLVSL 707

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 156/510 (30%), Positives = 229/510 (44%), Gaps = 100/510 (19%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI--------- 51
           +  CKSL  I LS N L G++PK  +  L   L D  M+  N++GGIPE I         
Sbjct: 422 LGKCKSLKTIDLSFNALTGLIPK-EIWTLPK-LSDLVMWANNLTGGIPESICVDGGNLET 479

Query: 52  ----------------SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSI 95
                           S  TN   ++L  N L G IP+ + KL+KL  L L +N L G+I
Sbjct: 480 LILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNI 539

Query: 96  PDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL-------------------------- 129
           P ++ +   L  LDL+ N L+G+LP   ++   L                          
Sbjct: 540 PSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 130 ---RIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF 186
                  + + +L   P+     K  +    +    +S           +I +D S N  
Sbjct: 600 GLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSN--------GSMIYLDLSYNAV 651

Query: 187 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS 246
           SG IP   G +  L+ L LG+N L G+IPDSFG L ++  L+LS+N+L G +P SL  LS
Sbjct: 652 SGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLS 711

Query: 247 YLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCK-----TSIHHTS 301
           +L +L++S N L G IP GG    F    +  N  LCG P   +PPC      T  H   
Sbjct: 712 FLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVP---LPPCSSGSRPTRSHAHP 768

Query: 302 WKNSLLLRIVLPLSTTFMIVVILLILRYQQRG------KRPSNDANMPL----------- 344
            K S+   +   +  +FM +V+L++  Y+ R       +R     ++P            
Sbjct: 769 KKQSIATGMSAGIVFSFMCIVMLIMALYRARKVQKKEKQREKYIESLPTSGSSSWKLSSV 828

Query: 345 -------VATW----RTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVF 393
                  VAT+    R  ++  L  AT+ FS +++IG GGFG VYKA+L D   VA+K  
Sbjct: 829 HEPLSINVATFEKPLRKLTFAHLLEATNGFSADSMIGSGGFGDVYKAKLADGSVVAIKKL 888

Query: 394 NLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
               G+    F  E E +  I+HRNL+ +L
Sbjct: 889 IQVTGQGDREFMAEMETIGKIKHRNLVPLL 918

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  190 bits (482), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 223/453 (49%), Gaps = 38/453 (8%)

Query: 12  LSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSI 71
           L  N L G +P+  V  L  +L    + +  ++G IP  + NL+ +  + L GNKL G I
Sbjct: 271 LQGNKLTGRIPE--VIGLMQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQI 328

Query: 72  PITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRI 131
           P  L  + +L  L L DN+L G IP ++  L +L+ L+L  N L G +P+  S+  +L  
Sbjct: 329 PPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAALNQ 388

Query: 132 VSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI 190
            ++  N L+ +VPL F NL  +  LN SSN     +P E+G++  L  +D S NNFSG I
Sbjct: 389 FNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSI 448

Query: 191 PTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSY--- 247
           P  +G L++L  L L  N L G++P  FG+L S++ +++S N L+G IP  L +L     
Sbjct: 449 PLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINS 508

Query: 248 ---------------------LENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP 286
                                L NLN+SFN L G IP   +F  FS  SF GN  LCG  
Sbjct: 509 LILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCG-- 566

Query: 287 NLQVPPCKTSIHHTS-WKNSLLLRIVLPLSTTFMIVVILLILRYQQR------GKRPSND 339
           N     C  S+  +  +    ++ +VL   T   ++ I +    QQ+       K+P   
Sbjct: 567 NWVGSICGPSLPKSQVFTRVAVICMVLGFITLICMIFIAVYKSKQQKPVLKGSSKQPEGS 626

Query: 340 ANMPLV-ATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG 398
             + ++       ++ ++ R T+   E  +IG G   +VYK        +A+K    Q  
Sbjct: 627 TKLVILHMDMAIHTFDDIMRVTENLDEKYIIGYGASSTVYKCTSKTSRPIAIKRIYNQYP 686

Query: 399 RAFESFDVECEMMKNIRHRNLIKILHGVAVITF 431
             F  F+ E E + +IRHRN++  LHG A+  F
Sbjct: 687 SNFREFETELETIGSIRHRNIVS-LHGYALSPF 718

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  188 bits (477), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 139/464 (29%), Positives = 227/464 (48%), Gaps = 42/464 (9%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSV----------------GNLSHSLED------FRM 38
           ++N   LT++ L  N   G LP T                  G +  SL D       R 
Sbjct: 378 IANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRF 437

Query: 39  YNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDD 98
              + SG I E          ++L  N  +G +     + QKL    L +N + G+IP +
Sbjct: 438 KGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPE 497

Query: 99  ICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNF 157
           I ++ +L +LDL  N+++G LP   SN+  +  + L  N+L+  +P     L ++  L+ 
Sbjct: 498 IWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDL 557

Query: 158 SSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS 217
           SSN  +S +P  + NL  L  ++ S N+    IP  +  L  L+ L L YN+L G I   
Sbjct: 558 SSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQ 617

Query: 218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFE 277
           F  L +L+ L+LS+NNLSG IP S + +  L ++++S N L+G IP   +F N   ++FE
Sbjct: 618 FRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFE 677

Query: 278 GNELLCGSPNLQ--VPPCKTSIHHTSWKN-SLLLRIVLPLSTTFMIVVIL--LILRYQQR 332
           GN+ LCGS N    + PC  +    S K+ +L++ I++P+    +I+ +   + + +++R
Sbjct: 678 GNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAGIFICFRKR 737

Query: 333 GKR-------PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDR 385
            K+        S    + + +      Y E+ +AT EF    LIG GG G VYKA+L + 
Sbjct: 738 TKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA 797

Query: 386 MEVAVKVFNLQCGRAF------ESFDVECEMMKNIRHRNLIKIL 423
           + +AVK  N     +       + F  E   +  IRHRN++K+ 
Sbjct: 798 I-MAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLF 840

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 147/469 (31%), Positives = 226/469 (48%), Gaps = 53/469 (11%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPE----------- 49
           + +C SLT + L +N L G +P   +  L+  L+   +   N+SG IP            
Sbjct: 516 LGDCTSLTTLDLGSNNLQGQIPD-KITALAQ-LQCLVLSYNNLSGSIPSKPSAYFHQIEM 573

Query: 50  -EISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL 108
            ++S L +  I +L  N+L+G IP  L +   L  + L +N L G IP  +  L  L  L
Sbjct: 574 PDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTIL 633

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLP 167
           DL GN L+GS+P    N   L+ ++L +N+L   +P +F  L  ++ LN + N L  P+P
Sbjct: 634 DLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVP 693

Query: 168 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFL 227
             +GNLK L  +D S NN SG + +E+  ++ L  L++  N+  G IP   G+L  L++L
Sbjct: 694 ASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYL 753

Query: 228 NLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN 287
           ++S N LSG IP  +  L  LE LNL+ N L GE+P  G   + S     GN+ LCG   
Sbjct: 754 DVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCG--- 810

Query: 288 LQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSN--------- 338
            +V      I  T  +++  +  ++ L  T ++ V +  LR     KR            
Sbjct: 811 -RVVGSDCKIEGTKLRSAWGIAGLM-LGFTIIVFVFVFSLRRWAMTKRVKQRDDPERMEE 868

Query: 339 -------DANMPLVATWRTFSYL-----------------ELFRATDEFSENNLIGKGGF 374
                  D N+  ++  R+   L                 ++  ATD FS+ N+IG GGF
Sbjct: 869 SRLKGFVDQNLYFLSGSRSREPLSINIAMFEQPLLKVRLGDIVEATDHFSKKNIIGDGGF 928

Query: 375 GSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
           G+VYKA L     VAVK  +    +    F  E E +  ++H NL+ +L
Sbjct: 929 GTVYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLL 977

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
255572272	1089	serine-threonine protein kinase, plant-t	0.845	0.387	0.521	1e-111
224116832	1061	predicted protein [Populus trichocarpa]	0.871	0.409	0.503	1e-111
255585401	843	serine-threonine protein kinase, plant-t	0.843	0.499	0.528	1e-109
359483198	1087	PREDICTED: probable LRR receptor-like se	0.845	0.388	0.525	1e-108
224139658	1019	predicted protein [Populus trichocarpa]	0.861	0.421	0.495	1e-106
359483688	1197	PREDICTED: LRR receptor-like serine/thre	0.859	0.358	0.498	1e-105
147843440	868	hypothetical protein VITISV_043680 [Viti	0.837	0.481	0.517	1e-105
359483675	1250	PREDICTED: LRR receptor-like serine/thre	0.857	0.342	0.495	1e-104
359483685	1046	PREDICTED: LRR receptor-like serine/thre	0.841	0.401	0.5	1e-103
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.855	0.300	0.504	1e-103

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/428 (52%), Positives = 290/428 (67%), Gaps = 6/428 (1%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           + NC++L  ++LS NPLDG LP  SVGNLS+SLE F   +  I G + E I NL++ T +
Sbjct: 436 LKNCQNLKYLWLSYNPLDGYLPH-SVGNLSNSLESFLASDGLIKGSVHESIGNLSSLTRL 494

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           NLG N L G IP T+  L+ LQGL L  N L+GSIP ++C L  LY L+L GNKLSGS+P
Sbjct: 495 NLGNNDLTGRIPTTIGTLKHLQGLYLHGNDLDGSIPSELCDLRTLYNLELTGNKLSGSIP 554

Query: 121 ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
            CFSNLTSLR + L SN+  S +  T W LKDIL +N +SN+LT  LP EI NL+ +  I
Sbjct: 555 TCFSNLTSLRNLFLASNRFVSTISSTLWTLKDILQVNLASNYLTGSLPSEIENLRAVYMI 614

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           + S N  SG IP  IGGL++L  L+L  N+LQG IP S GD+ SL+FL+LS+NNLSG IP
Sbjct: 615 NISKNQLSGEIPISIGGLQDLAQLYLSGNKLQGPIPQSVGDIKSLEFLDLSSNNLSGMIP 674

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
            SL+ L YL+  N+SFN L+GEIP GGSF NFSA+SF GNE LCGS  LQV PCK     
Sbjct: 675 KSLDNLLYLKYFNVSFNYLQGEIPEGGSFSNFSAQSFIGNEALCGSARLQVSPCKDDNSR 734

Query: 300 TSWK--NSLLLRIVLP--LSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLE 355
            +    + ++LR VLP  +   F++  ++++ RY +R  + S + +   + T R  SY E
Sbjct: 735 ATETPGSKIVLRYVLPAIVFAVFVLAFVIMLKRYCERKAKFSIEDDFLALTTIRRISYHE 794

Query: 356 LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
           L  AT+ F E+N +G G FGSVYK  L D   +A KVFNLQ  RAF+SFD ECE+++N+R
Sbjct: 795 LQLATNGFQESNFLGMGSFGSVYKGTLSDGTVIAAKVFNLQLERAFKSFDTECEVLRNLR 854

Query: 416 HRNLIKIL 423
           HRNL+KI+
Sbjct: 855 HRNLVKII 862

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/439 (50%), Positives = 289/439 (65%), Gaps = 4/439 (0%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
           NC+SL  +  + NPL G LP  S+GNLS SLE+   ++C I G IP  I NL+N   + L
Sbjct: 409 NCRSLAYLRFNGNPLRGRLP-VSIGNLSASLEELYAFDCRIIGNIPRGIGNLSNLIGLIL 467

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC 122
             N+L G+IP  + +L+ LQ   L  NKL+G IP++ICHL  L  L L  N  SGSLPAC
Sbjct: 468 QQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEICHLERLSYLYLLENGFSGSLPAC 527

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
            SN+TSLR + LGSN+ TS+P TFW+LKD+L +N S N LT  LPLEIGNLKV+  IDFS
Sbjct: 528 LSNITSLRELYLGSNRFTSIPTTFWSLKDLLQINLSFNSLTGTLPLEIGNLKVVTVIDFS 587

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL 242
            N  SG IPT I  L+NL +  L  NR+QG IP SFGDL+SL+FL+LS N+LSGAIP SL
Sbjct: 588 SNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSSFGDLVSLEFLDLSRNSLSGAIPKSL 647

Query: 243 EKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKT-SIHHTS 301
           EKL +L+  N+SFN+L+GEI  GG F NFS  SF  NE LCG   +QVPPCK+ S H  S
Sbjct: 648 EKLVHLKTFNVSFNRLQGEILDGGPFANFSFRSFMDNEALCGPIRMQVPPCKSISTHRQS 707

Query: 302 WK-NSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPL-VATWRTFSYLELFRA 359
            +    ++R ++P     ++V+ L ++ +++  KR  +    PL  ATWR  SY EL+RA
Sbjct: 708 KRPREFVIRYIVPAIAFIILVLALAVIIFRRSHKRKLSTQEDPLPPATWRKISYHELYRA 767

Query: 360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
           T+ F+E NL+G G  GSVYK  L D + +AVKVF+LQ       FD ECE+++ +RHRNL
Sbjct: 768 TEGFNETNLLGTGSCGSVYKGTLSDGLCIAVKVFHLQLEGELMRFDSECEVLRMLRHRNL 827

Query: 420 IKILHGVAVITFTVCLCLF 438
           +KI+     + F   +  F
Sbjct: 828 VKIISSCCNLDFKALILEF 846

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585401|ref|XP_002533396.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526770|gb|EEF28996.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/424 (52%), Positives = 286/424 (67%), Gaps = 3/424 (0%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++ CK L  + L  NPL+  LP TS+GNLS S+E F + +CNI G IP EI  L+N   +
Sbjct: 194 LARCKELRRLVLIGNPLNSTLP-TSIGNLS-SIEYFNVQSCNIKGNIPSEIGVLSNLITL 251

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +L  N+L GSIP+T+  LQKLQ L L  N L GSIP DICHL+ L  L L  N L G LP
Sbjct: 252 HLQNNELVGSIPVTIGGLQKLQRLYLHGNLLYGSIPTDICHLSNLGELFLSNNSLFGPLP 311

Query: 121 ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           ACF +L SLRI+ L SN  TS +P + W+LKD+L LN SSN L+  +PL IGNLKVL  +
Sbjct: 312 ACFGDLISLRILHLHSNNFTSGIPFSLWSLKDVLELNLSSNSLSGHIPLSIGNLKVLTQV 371

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           DFS N+ SG+IP  IG L+NL  L L +NR +G IP+ FG+LISL+ L+LS+NNLSG IP
Sbjct: 372 DFSYNSLSGIIPNAIGSLRNLMSLSLTHNRFEGPIPEPFGELISLESLDLSSNNLSGKIP 431

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
            SLE+L YL+ LN+SFN L+GE+P  G+F NFSA SF GN  LCGS  L + PCK + H 
Sbjct: 432 KSLEQLKYLKYLNVSFNNLDGEVPNKGAFANFSASSFLGNLALCGSRLLPLMPCKNNTHG 491

Query: 300 TSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELFRA 359
            S  ++ LL I +  ++   I  IL+ LR Q+      N  ++  V TWR  S+ EL +A
Sbjct: 492 GSKTSTKLLLIYVLPASILTIAFILVFLRCQKVKLELENVMDIITVGTWRRISFQELEQA 551

Query: 360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
           TD F  +NL+G GG+GSVYK RL D   VA+KVFNL    AF+ FD ECE+M +IRHRNL
Sbjct: 552 TDGFCASNLLGAGGYGSVYKGRLEDGTNVAIKVFNLGVEGAFKIFDTECEVMSSIRHRNL 611

Query: 420 IKIL 423
           +KI+
Sbjct: 612 VKII 615

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/426 (52%), Positives = 290/426 (68%), Gaps = 4/426 (0%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NCK L ++YLS NPL GILP  S+GNLS SL+ F    C + G IP EI NL+N  ++
Sbjct: 440 LTNCKRLRILYLSFNPLIGILP-ISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSNLYLL 498

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +L  N L G+IP ++ +LQKLQGL L  NKL+GSIP+DIC L  L  L L  N+LSGS+P
Sbjct: 499 SLNNNDLTGTIPPSIGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLSGSIP 558

Query: 121 ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           AC   LT LR + LGSNKL S +P T W+L  IL+L+ SSNFL   LP ++GNLKVL+ I
Sbjct: 559 ACLGELTFLRHLYLGSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKVLVKI 618

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N  SG IP+ IGGL++L  L L +NR +G I  SF +L SL+F++LS+N L G IP
Sbjct: 619 DLSRNQLSGEIPSNIGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALFGEIP 678

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
            SLE L YL+ L++SFN L GEIP  G F NFSAESF  N+ LCGSP L++PPC+T    
Sbjct: 679 KSLEGLVYLKYLDVSFNGLYGEIPPEGPFANFSAESFMMNKALCGSPRLKLPPCRTGTRW 738

Query: 300 TSWKNSLLLRIVLP--LSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELF 357
           ++  + LLL+ +LP  LST   + +I +  R ++R       +   L ATWR  SY E+F
Sbjct: 739 STTISWLLLKYILPAILSTLLFLALIFVWTRCRKRNAVLPTQSESLLTATWRRISYQEIF 798

Query: 358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
           +AT+ FS  NL+G+G  GSVY+  L D    A+KVFNLQ   AF+SFD ECE+M +IRHR
Sbjct: 799 QATNGFSAGNLLGRGSLGSVYRGTLSDGKNAAIKVFNLQEEAAFKSFDAECEVMHHIRHR 858

Query: 418 NLIKIL 423
           NLIKI+
Sbjct: 859 NLIKIV 864

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 281/434 (64%), Gaps = 4/434 (0%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++N + L  +++ +NPLDG+LP  SVGNLS  L  F +Y   + G IP EI NL+N  ++
Sbjct: 367 LTNSRQLKELHIGDNPLDGMLP-NSVGNLSSFLTKFYVYASKLKGNIPGEIGNLSNLIVL 425

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +L  N L G IP T+  L+K+Q L L  N L GSIP DIC    L  + L+ N LSG +P
Sbjct: 426 SLEENSLMGPIPTTVGGLRKIQVLYLHKNNLNGSIPSDICLARRLVDITLNNNVLSGEIP 485

Query: 121 ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           +C  NLTSLR + L  N L+S +P+  W+LKD+L LN  SNFL   LP ++G ++  IGI
Sbjct: 486 SCIGNLTSLRNLYLHFNILSSTIPMALWSLKDLLILNLHSNFLYGSLPSQVGEMEAAIGI 545

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
             S N  SG IP+ IG L+NL    L  N  QGSIP++FG L+SL+ L+LS NNLSG IP
Sbjct: 546 RLSSNQLSGNIPSTIGSLQNLIRFSLSKNSFQGSIPEAFGGLVSLELLDLSQNNLSGEIP 605

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
            SLE L YLE  ++SFN L+GEIPRGG F NF+A SF  N+ LCG   LQVPPC      
Sbjct: 606 KSLEALRYLEFFSVSFNGLQGEIPRGGPFANFTARSFIMNKGLCGPSRLQVPPCSIESRK 665

Query: 300 TSWKNSLLLRIVLPLSTTFMIVV--ILLILRYQQRGKRPSNDANMPLVATWRTFSYLELF 357
            S   S LLR  LP   + ++VV  I L++  ++R ++      +P+ A  R  SYLEL 
Sbjct: 666 DSKTKSRLLRFSLPTVASILLVVAFIFLVMGCRRRYRKDPIPEALPVTAIQRRISYLELL 725

Query: 358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
            AT+EF E+NL+G G FGSVY+ RL D + VAVK+FNLQ  RAF SFD ECE+M+NIRHR
Sbjct: 726 HATNEFHESNLLGIGSFGSVYQGRLRDGLNVAVKIFNLQLQRAFRSFDTECEIMRNIRHR 785

Query: 418 NLIKILHGVAVITF 431
           NL+KI+   + + F
Sbjct: 786 NLVKIICSCSNLDF 799

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483688|ref|XP_003633002.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/435 (49%), Positives = 288/435 (66%), Gaps = 6/435 (1%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NCK L  +++  NPL G LP  S+GNL  +LE F  Y C   G IP  I NLTN  ++
Sbjct: 553 LTNCKFLRTLWIGYNPLKGTLPN-SLGNLPIALESFNAYACQFRGTIPTGIGNLTNLIML 611

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +LG N L GSIP TL +LQKLQ L +  N++ GSIP+D+CHL  L  L L  NKLSGS P
Sbjct: 612 HLGANDLTGSIPTTLGQLQKLQALSIAGNRIRGSIPNDLCHLKNLGYLGLSSNKLSGSTP 671

Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           +CF +L +LR + L SN L  ++P + W+L+D+L LN SSNFLT  LP E+GN+K +I +
Sbjct: 672 SCFGDLLALRELFLDSNALAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKYIITL 731

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N  SG IP+ +G L+NL  L L  N+LQG IP   GDL+SL+ L+LS NNLS  IP
Sbjct: 732 DLSKNLVSGYIPSRMGKLQNLITLSLSQNKLQGPIPVECGDLVSLESLDLSQNNLSRIIP 791

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
            SLE L YL+ LN+SFNKL+GEIP GG F NF+AESF  NE LCG+P+ QV  C  +   
Sbjct: 792 KSLEALIYLKYLNVSFNKLQGEIPNGGPFVNFNAESFMFNEALCGAPHFQVMACDKNNRT 851

Query: 300 TSWKNS--LLLRIVLPL-STTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLEL 356
            SWK    +L  I+LP+ ST  ++V I+L +R +   + P+  A+  L  T    S+ +L
Sbjct: 852 QSWKTKSFILKYILLPVGSTVTLVVFIVLWIRRRDNMEIPTPIASW-LPGTHEKISHQQL 910

Query: 357 FRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH 416
             AT++F E+NLIGKG  G VYK  L + + VA+KVFNL+  RA  SFD ECE+M+ IRH
Sbjct: 911 LYATNDFGEDNLIGKGSQGMVYKGVLSNGLIVAIKVFNLEFQRALRSFDSECEVMQGIRH 970

Query: 417 RNLIKILHGVAVITF 431
           RNL++I+   + + F
Sbjct: 971 RNLVRIITCCSNLDF 985

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843440|emb|CAN79970.1| hypothetical protein VITISV_043680 [Vitis vinifera]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/429 (51%), Positives = 284/429 (66%), Gaps = 11/429 (2%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NC SL  +++S NPL GI+P  S+GNLS SLE      C + G IP  IS LTN   +
Sbjct: 242 LTNCNSLRNLWISGNPLKGIIP-NSLGNLSISLESIVASGCQLRGTIPTGISYLTNLIDL 300

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  N L G IP +  +LQKLQ L    N++ G IP  +CHLA L  LDL  NKLSG++P
Sbjct: 301 RLDDNNLTGLIPTSSGRLQKLQVLYFSQNQIHGPIPSGLCHLANLGFLDLSSNKLSGTIP 360

Query: 121 ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
            CF NLT LR ++L SN L S VP + W L+D+L LN SSNFL S LPLE+GN+K L+ +
Sbjct: 361 GCFGNLTLLRGINLHSNGLASEVPSSLWTLRDLLVLNLSSNFLNSQLPLEVGNMKSLVVL 420

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N FSG IP+ I  L+NL  L L +N+LQG +P +FGDL+SL++L+LS NNLSG+IP
Sbjct: 421 DLSKNQFSGNIPSTISLLQNLVQLHLSHNKLQGHMPPNFGDLVSLEYLDLSGNNLSGSIP 480

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPC-KTSIH 298
            SLE L YL+ LN+S NKL+ EIP GG F NF+AESF  N  LCG+P  QV  C K +  
Sbjct: 481 KSLEALKYLKYLNVSVNKLQREIPNGGPFANFTAESFISNLALCGAPRFQVMACEKDTRR 540

Query: 299 HTSWKNSLLLRIVLPL--STTFMIVVILLILRYQQRGKRPSNDANMPLVATWR---TFSY 353
           HT    SLLL+ ++PL  S + +IVV+L +LR Q++ K  +    + L    R     S+
Sbjct: 541 HTK---SLLLKCIVPLAVSLSIIIVVVLFVLRKQRQTKSEALQVQVDLTLLPRMRPMISH 597

Query: 354 LELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKN 413
            EL  AT+ F E NLIGKG  G VYK  L D + VAVKVFN++   AF+SF+VE E+M+N
Sbjct: 598 QELLYATNYFDEENLIGKGSLGMVYKGVLSDGLIVAVKVFNVELQGAFKSFEVEYEVMQN 657

Query: 414 IRHRNLIKI 422
           IRHRNL KI
Sbjct: 658 IRHRNLAKI 666

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483675|ref|XP_003632999.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/436 (49%), Positives = 290/436 (66%), Gaps = 8/436 (1%)

Query: 1    MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
            ++NCK L  +++  NPL G LP  S+GNLS +LE F    C+  G IP  I NLTN   +
Sbjct: 584  LTNCKFLRTLWIDYNPLKGTLPN-SLGNLSVALESFTASACHFRGTIPTGIGNLTNLIWL 642

Query: 61   NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            +LG N L GSIP TL +LQKLQ L +  N+++GSIP+D+ HL  L  L L  NKLSGS+P
Sbjct: 643  DLGANDLTGSIPTTLGQLQKLQRLYIAGNRIQGSIPNDLFHLKNLGYLHLSSNKLSGSIP 702

Query: 121  ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
            +CF +L +LR +SL SN L  ++P++FW+L+D+L L+ SSNFLT  LP E+GN+K +  +
Sbjct: 703  SCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLLVLSLSSNFLTGNLPPEVGNMKSITTL 762

Query: 180  DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
            D S N  SG IP  +G L+NL  L L  N+LQGSIP  FGDL+SL+ ++LS NNLSG IP
Sbjct: 763  DLSKNLISGYIPRRMGELQNLVNLCLSQNKLQGSIPVEFGDLLSLESMDLSQNNLSGTIP 822

Query: 240  ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
             SLE L YL++LN+SFNKL+GEIP GG F NF+AESF  NE LCG+P+ QV  C  + H 
Sbjct: 823  KSLEALIYLKHLNVSFNKLQGEIPDGGPFVNFTAESFIFNEALCGAPHFQVIACDKNNHT 882

Query: 300  TSWKNS--LLLRIVLPL-STTFMIVVILLILRYQQRGKRPSN-DANMPLVATWRTFSYLE 355
             SWK    +L  I+LP+ S   ++  I+L +R Q   + P+  D+ +P        S  +
Sbjct: 883  QSWKTKSFILKYILLPVGSIVTLVAFIVLWIRRQDNTEIPAPIDSWLP--GAHEKISQQQ 940

Query: 356  LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
            L  AT++F E+NLIGKG  G VYK  L + + VA+KVFNL+   A  SFD ECE+M+ I 
Sbjct: 941  LLYATNDFGEDNLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQGIC 1000

Query: 416  HRNLIKILHGVAVITF 431
            HRNLI+I+   + + F
Sbjct: 1001 HRNLIRIITCCSNLDF 1016

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera]

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/428 (50%), Positives = 287/428 (67%), Gaps = 8/428 (1%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NCK L  +++  NPL G LP  S+GNL  +LE F    C   G IP  I NLTN   +
Sbjct: 402 LTNCKFLRNLWIGYNPLTGTLPN-SLGNLPIALEIFIASACQFRGTIPTGIGNLTNLIWL 460

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +LG N L GSIP TL +LQKLQ L +  N++ GSIP+D+CHL  L  L L  NKLSGS+P
Sbjct: 461 DLGANDLTGSIPTTLGQLQKLQALSIVGNRIRGSIPNDLCHLKNLGYLRLSYNKLSGSIP 520

Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           +CF +L +LR +SL SN L  ++P++FW+L+D+L LN SSNFLT  LP E+GN+K +  +
Sbjct: 521 SCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTL 580

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N  SG IP+ +G L+NL  L L  N+LQG IP  FGDL+SL+ L+LS NNLSG IP
Sbjct: 581 DLSKNLVSGYIPSRMGKLQNLITLSLSQNKLQGPIPVEFGDLVSLESLDLSQNNLSGTIP 640

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
            +LE L YL+ LN+SFNKL+GEIP GG F  F+AESF  NE LCG+P+ QV  C  +   
Sbjct: 641 KTLEALIYLKYLNVSFNKLQGEIPNGGPFVKFTAESFMFNEALCGAPHFQVMACDKNNRT 700

Query: 300 TSWKNS--LLLRIVLPL-STTFMIVVILLILRYQQRGKRPSN-DANMPLVATWRTFSYLE 355
            SWK    +L  I+LP+ ST  ++V I+L +R +   + P+  D+ +P   T    S+ +
Sbjct: 701 QSWKTKSFILKYILLPVGSTVTLVVFIVLWIRRRDNMEIPTPIDSWLP--GTHEKISHQQ 758

Query: 356 LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
           L  AT++F E+NLIGKG  G VYK  L + + VA+KVFNL+   A  SF+ ECE+M+ IR
Sbjct: 759 LLYATNDFGEDNLIGKGSQGMVYKGVLSNGLTVAIKVFNLEFQGALRSFNSECEVMQGIR 818

Query: 416 HRNLIKIL 423
           HRNL++I+
Sbjct: 819 HRNLVRII 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/436 (50%), Positives = 282/436 (64%), Gaps = 9/436 (2%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++NCK L  +++ +NPL GILP  S+GNLS SLE F    C   G IP  I NL N   +
Sbjct: 556 LTNCKFLRRLWIEDNPLKGILPN-SLGNLSISLESFDASACQFKGTIPTGIGNLINLIDL 614

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  N L G IPI+   LQKLQ   +  N++ GSIP  +CHL  L  LDL  NKLSG++P
Sbjct: 615 RLNDNDLTGLIPISFGHLQKLQWFAISGNRIHGSIPSVLCHLRNLGYLDLSSNKLSGTIP 674

Query: 121 ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
            CF NLT+LR +SL SN L S +P + W L+D+L LN SSNFL   LPLE+GN+K L+ +
Sbjct: 675 GCFGNLTALRNISLHSNGLASEIPSSLWTLRDLLVLNLSSNFLNCQLPLEVGNMKSLLVL 734

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N FSG IP+ I  L+NL  L+L +N+LQG +P +FG L+SL++L+LS NN SG IP
Sbjct: 735 DLSKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHMPPNFGALVSLEYLDLSGNNFSGTIP 794

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHH 299
            SLE L YL+ LN+SFNKL+GEIP  G F NF+AESF  N  LCG+P  QV  C+     
Sbjct: 795 TSLEALKYLKYLNVSFNKLQGEIPNRGPFANFTAESFISNLALCGAPRFQVMACEKDARR 854

Query: 300 TSWKNSLLLRIVLPLSTTF--MIVVILLIL--RYQQRGKRPSNDANMPLVATWRTFSYLE 355
            +   SLLL+ ++PLS +   MI+V+L  L  R Q   + P    ++ L    R  S+ E
Sbjct: 855 NT--KSLLLKCIVPLSVSLSTMILVVLFTLWKRRQTESESPVQ-VDLLLPRMHRLISHQE 911

Query: 356 LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
           L  AT  F E NLIGKG  G VYK  L D + VAVKVFNL+   AF+SF+VECE+M+NIR
Sbjct: 912 LLYATSYFGEENLIGKGSLGMVYKGVLSDGLIVAVKVFNLELHGAFKSFEVECEVMRNIR 971

Query: 416 HRNLIKILHGVAVITF 431
           HRNL KI+   + + F
Sbjct: 972 HRNLAKIISSCSNLDF 987

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.829	0.403	0.380	2.5e-63
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.843	0.517	0.343	1.3e-59
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.841	0.409	0.357	1e-58
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.859	0.424	0.359	2e-58
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.859	0.425	0.338	1.7e-55
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.843	0.408	0.334	1.9e-55
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.859	0.424	0.314	2.5e-53
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.823	0.419	0.344	4.7e-53
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.841	0.358	0.308	3.9e-52
TAIR|locus:2092810	1164	BRL3 "BRI1-like 3" [Arabidopsi	0.591	0.253	0.323	7.7e-40

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 652 (234.6 bits), Expect = 2.5e-63, P = 2.5e-63
 Identities = 164/431 (38%), Positives = 231/431 (53%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             ++NC  L  + L  N L G+LP  S  NLS SL    +    I+G IP++I NL     +
Sbjct:   347 LTNCSKLQTLNLGENNLGGVLPN-SFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHL 405

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
              L  N   GS+P +L            +N L GSIP  I +L EL  L L  NK SG +P
Sbjct:   406 YLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIP 465

Query:   121 ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDI-LNLNFSSNFLTSPLPLEIGNLKVLIG 178
                SNLT+L  + L +N L+  +P   +N++ + + +N S N L   +P EIG+LK L+ 
Sbjct:   466 YTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVE 525

Query:   179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAI 238
                  N  SG IP  +G  + L YL+L  N L GSIP + G L              G I
Sbjct:   526 FHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQI 585

Query:   239 PASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSI 297
             P SL  ++ L +LNLSFN   GE+P  G+F   S  S +GN  LCG  P+L +P C   +
Sbjct:   586 PTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPDLHLPRCCPLL 645

Query:   298 HHTSWKNSLLLRIVLPLSTTFMIVVIL-LILRYQQRGKR--PSNDA--NMPLVATWRTFS 352
              +   K+  +L I + L+    I+  L L++ + +R K+  PS  +    PLV      S
Sbjct:   646 ENR--KHFPVLPISVSLAAALAILSSLYLLITWHKRTKKGAPSRTSMKGHPLV------S 697

Query:   353 YLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMK 412
             Y +L +ATD F+  NL+G G FGSVYK +L  +  VAVKV  L+  +A +SF  ECE ++
Sbjct:   698 YSQLVKATDGFAPTNLLGSGSFGSVYKGKLNIQDHVAVKVLKLENPKALKSFTAECEALR 757

Query:   413 NIRHRNLIKIL 423
             N+RHRNL+KI+
Sbjct:   758 NMRHRNLVKIV 768

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 148/431 (34%), Positives = 221/431 (51%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             ++NC +L  + L      G+LP  SV NLS SL    + +  ISG +P +I NL N   +
Sbjct:   321 LTNCSNLQEVELGGCKFGGVLPD-SVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYL 379

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
             +L  N L GS+P + S          ++NKL GS+P  I +L +L  +++  N   G++P
Sbjct:   380 SLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIP 439

Query:   121 ACFSNLTSLRIVSLGSNK-LTSVPLTFWNLKDILN-LNFSSNFLTSPLPLEIGNLKVLIG 178
             +   NLT L  ++LG N  +  +P+  +++  +   L+ S N L   +P EIG LK ++ 
Sbjct:   440 STLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVE 499

Query:   179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAI 238
                  N  SG  P+ IG  + L++LFL  N L GSIP +   L              G I
Sbjct:   500 FHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQI 559

Query:   239 PASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSI 297
             P SL  +  L +LNLSFN   GE+P  G F N S    +GN  +CG  P L +P C    
Sbjct:   560 PMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLPTCSLKS 619

Query:   298 HHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELF 357
                     LLL +V+ L +T  +  +L +L    + ++    A   +       +Y +L 
Sbjct:   620 RKKKKHQILLLVVVICLVSTLAVFSLLYMLLTCHKRRKKEVPATTSMQGH-PMITYKQLV 678

Query:   358 RATDEFSENNLIGKGGFGSVYKARL----GDRME-VAVKVFNLQCGRAFESFDVECEMMK 412
             +ATD FS ++L+G G FGSVYK       G+    VAV+V  L+  +A +SF  ECE ++
Sbjct:   679 KATDGFSSSHLLGSGSFGSVYKGEFDSQDGEITSLVAVRVLKLETPKALKSFTAECETLR 738

Query:   413 NIRHRNLIKIL 423
             N RHRNL+KI+
Sbjct:   739 NTRHRNLVKIV 749

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.0e-58, P = 1.0e-58
 Identities = 156/436 (35%), Positives = 226/436 (51%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             ++NC  L  + +  N L G LP   + NLS  L +  +    ISG IP  I NL +   +
Sbjct:   348 LTNCSQLQYLNVGFNKLGGQLP-VFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTL 406

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
             +LG N L G +P +L             N L G IP  + +++ L  L L  N   GS+P
Sbjct:   407 DLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIP 466

Query:   121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
             +   + + L  ++LG+NKL  S+P     L  ++ LN S N L  PL  +IG LK L+ +
Sbjct:   467 SSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLAL 526

Query:   180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP 239
             D S N  SG IP  +    +LE+L L  N   G IPD  G L              G IP
Sbjct:   527 DVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRFLDLSKNNLSGTIP 585

Query:   240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSI- 297
               +   S L+NLNLS N  +G +P  G F N SA S  GN  LCG  P+LQ+ PC   + 
Sbjct:   586 EYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPCSVELP 645

Query:   298 -HHTSWKNSLLLRIVLPLSTTFMIVVILLILR-YQQRGK--RPSNDAN----MPLVATWR 349
               H+S +  + + +   ++   ++ + ++ L  Y+ R K  R +N+ N     P+ + + 
Sbjct:   646 RRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRSFSPVKSFYE 705

Query:   350 TFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGR-AFESFDVE 407
               SY EL++ T  FS +NLIG G FG+V+K  LG + + VA+KV NL C R A +SF  E
Sbjct:   706 KISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNL-CKRGAAKSFIAE 764

Query:   408 CEMMKNIRHRNLIKIL 423
             CE +  IRHRNL+K++
Sbjct:   765 CEALGGIRHRNLVKLV 780

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 2.0e-58, P = 2.0e-58
 Identities = 159/442 (35%), Positives = 221/442 (50%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             ++NC  L  + +  N L G LP  S+ NLS  L    +    ISG IP +I NL N   +
Sbjct:   332 LTNCTQLETLGIGRNRLGGDLP-ISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKL 390

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
              L  N L+G +P +L             N+L G IP  I ++  L  LDL  N   G +P
Sbjct:   391 ILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVP 450

Query:   121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
                 N + L  + +G NKL  ++PL    ++ +L L+ S N L   LP +IG L+ L  +
Sbjct:   451 TSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTL 510

Query:   180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP 239
                 N  SG +P  +G    +E LFL  N   G IPD  G L+             G+IP
Sbjct:   511 SLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIP 569

Query:   240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSIH 298
                   S LE LNLSFN LEG++P  G F N +  S  GN  LCG     Q+ PC +   
Sbjct:   570 EYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQAP 629

Query:   299 HTSWKNSLLLR-IVLPLST-------TFMIVVILLILRYQQRGKRPSNDANMPLVATWRT 350
                 K+S  L+ +V+ +S         FM  V L+ LR +++ K  +N     L      
Sbjct:   630 SVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNPTPSTLEVLHEK 689

Query:   351 FSYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECE 409
              SY +L  AT+ FS +N++G G FG+VYKA L  ++  VAVKV N+Q   A +SF  ECE
Sbjct:   690 ISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRRGAMKSFMAECE 749

Query:   410 MMKNIRHRNLIKILHGVAVITF 431
              +K+IRHRNL+K+L   + I F
Sbjct:   750 SLKDIRHRNLVKLLTACSSIDF 771

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.7e-55, P = 1.7e-55
 Identities = 149/440 (33%), Positives = 225/440 (51%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             ++NC  L  + +S N L G LP TS+ N+S  L    +    I G IP +I NL     +
Sbjct:   333 LTNCSHLHGLSVSYNRLGGALP-TSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSL 391

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
              L  N L G +P +L             N+  G IP  I +L +L +L L  N   G +P
Sbjct:   392 LLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVP 451

Query:   121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
                 + + +  + +G NKL  ++P     +  +++LN  SN L+  LP +IG L+ L+ +
Sbjct:   452 PSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLSGSLPNDIGRLQNLVEL 511

Query:   180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP 239
                 NN SG +P  +G   ++E ++L  N   G+IPD  G L+             G+I 
Sbjct:   512 LLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPDIKG-LMGVKNVDLSNNNLSGSIS 570

Query:   240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSIH 298
                E  S LE LNLS N  EG +P  G F N +  S  GN+ LCGS   L++ PC     
Sbjct:   571 EYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLCGSIKELKLKPCIAQAP 630

Query:   299 HTSWKN-SLLLRIVLPLSTTFMIVVILLILR---YQQR--GKRPSNDANMPLVATWRTFS 352
                 ++ SLL ++ + +S    ++++L I+    +++R   ++ +N A   L       S
Sbjct:   631 PVETRHPSLLKKVAIGVSVGIALLLLLFIVSLSWFKKRKNNQKINNSAPFTLEIFHEKLS 690

Query:   353 YLELFRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMM 411
             Y +L  ATD FS +N++G G FG+V+KA L    + VAVKV N+Q   A +SF  ECE +
Sbjct:   691 YGDLRNATDGFSSSNIVGSGSFGTVFKALLQTENKIVAVKVLNMQRRGAMKSFMAECESL 750

Query:   412 KNIRHRNLIKILHGVAVITF 431
             K+IRHRNL+K+L   A I F
Sbjct:   751 KDIRHRNLVKLLTACASIDF 770

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.9e-55, P = 1.9e-55
 Identities = 146/436 (33%), Positives = 220/436 (50%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             ++NC  L  + +  N L G LP  S+ NLS +L    +    ISG IP +I NL +   +
Sbjct:   340 VANCTQLEYLDVGYNRLGGELP-ASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
             +L  N L+G +P++              N + G IP    ++  L +L L+ N   G +P
Sbjct:   399 SLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIP 458

Query:   121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
                     L  + + +N+L  ++P     +  +  ++ S+NFLT   P E+G L++L+G+
Sbjct:   459 QSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGL 518

Query:   180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP 239
               S N  SG +P  IGG  ++E+LF+  N   G+IPD    L+             G IP
Sbjct:   519 GASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIP 577

Query:   240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN-LQVPPC--KTS 296
               L  L  L NLNLS NK EG +P  G F N +A S  GN  +CG    +Q+ PC  + S
Sbjct:   578 RYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQAS 637

Query:   297 IHHT---SWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPS-NDANMPLVATWRTF- 351
                    S +  ++  I + +++  +I+++  +  + +R K+ + +D N     T   F 
Sbjct:   638 PRKRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFH 697

Query:   352 ---SYLELFRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVE 407
                SY EL  AT  FS  NLIG G FG+V+K  LG   + VAVKV NL    A +SF  E
Sbjct:   698 EKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAE 757

Query:   408 CEMMKNIRHRNLIKIL 423
             CE  K IRHRNL+K++
Sbjct:   758 CETFKGIRHRNLVKLI 773

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 2.5e-53, P = 2.5e-53
 Identities = 139/442 (31%), Positives = 220/442 (49%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             ++NC  L L+ +    L G LP TS+ N+S  L    +   +  G IP++I NL     +
Sbjct:   333 LTNCTHLQLLSVGYTRLGGALP-TSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRL 391

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
              LG N L G +P +L             N++ G IP  I +L +L  L L  N   G +P
Sbjct:   392 QLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVP 451

Query:   121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
                   + +  + +G NKL  ++P     +  ++NL+   N L+  LP +IG+L+ L+ +
Sbjct:   452 PSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPNDIGSLQNLVKL 511

Query:   180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP 239
                 N FSG +P  +G    +E LFL  N   G+IP+  G L+             G+IP
Sbjct:   512 SLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPNIRG-LMGVRRVDLSNNDLSGSIP 570

Query:   240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPC----- 293
                   S LE LNLS N   G++P  G+F N +     GN+ LCG   +L++ PC     
Sbjct:   571 EYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDLKLKPCLAQEP 630

Query:   294 KTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLIL---RYQQRGKRPSNDANMPLVATWRT 350
                  H+S    + + + + ++   ++V+  ++L   R +++ ++ +N     L      
Sbjct:   631 PVETKHSSHLKKVAILVSIGIALLLLLVIASMVLCWFRKRRKNQQTNNLVPSKLEIFHEK 690

Query:   351 FSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECE 409
              SY +L  AT+ FS +N++G G FG+V+KA L    + VAVKV N+Q   A +SF  ECE
Sbjct:   691 ISYGDLRNATNGFSSSNMVGSGSFGTVFKALLPTESKIVAVKVLNMQRRGAMKSFMAECE 750

Query:   410 MMKNIRHRNLIKILHGVAVITF 431
              +K+ RHRNL+K+L   A   F
Sbjct:   751 SLKDTRHRNLVKLLTACASTDF 772

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 4.7e-53, P = 4.7e-53
 Identities = 149/432 (34%), Positives = 220/432 (50%)

Query:     6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
             +L  I+L  N + G +P   + NL + L    + +  +SG IP E+  L+    V L  N
Sbjct:   298 NLVQIHLDQNRIHGSIPP-EISNLLN-LTLLNLSSNLLSGPIPRELCKLSKLERVYLSNN 355

Query:    66 KLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSN 125
              L G IP+ L             N L GSIPD   +L++L RL L GN LSG++P     
Sbjct:   356 HLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGK 415

Query:   126 LTSLRIVSLGSNKLT-SVPL-TFWNLKDI-LNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
               +L I+ L  N LT ++P+    NL+++ L LN SSN L+ P+PLE+  + +++ +D S
Sbjct:   416 CINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLS 475

Query:   183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASL 242
              N  SG IP ++G    LE+L L  N    ++P S G L              GAIP S 
Sbjct:   476 SNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSF 535

Query:   243 EKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS-PNLQVPPCKTSIHHTS 301
             ++ S L++LN SFN L G +   GSF   + ESF G+ LLCGS   +Q   CK    + S
Sbjct:   536 QQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESFLGDSLLCGSIKGMQA--CKKKHKYPS 593

Query:   302 WKNSLLLRIVL-PLSTTFMIVVI--------LLILRYQQRGKRPSNDANMPLVATWRTFS 352
                 +LL ++  P+   F   ++        L +   ++       + N P    +   S
Sbjct:   594 VLLPVLLSLIATPVLCVFGYPLVQRSRFGKNLTVYAKEEVEDEEKQNQNDP---KYPRIS 650

Query:   353 YLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE-SFDVECEMM 411
             Y +L  AT  F+ ++LIG G FG VYK  L +  +VAVKV + +    F  SF  EC+++
Sbjct:   651 YQQLIAATGGFNASSLIGSGRFGHVYKGVLRNNTKVAVKVLDPKTALEFSGSFKRECQIL 710

Query:   412 KNIRHRNLIKIL 423
             K  RHRNLI+I+
Sbjct:   711 KRTRHRNLIRII 722

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.9e-52, P = 3.9e-52
 Identities = 135/437 (30%), Positives = 232/437 (53%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             + N K L ++YL +N   G +P+  + NL+  L+  RMY+ ++ G IPEE+ ++   +++
Sbjct:   499 IGNLKDLNILYLHSNGFTGRIPR-EMSNLT-LLQGLRMYSNDLEGPIPEEMFDMKLLSVL 556

Query:    61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
             +L  NK +G IP   S          + NK  GSIP  +  L+ L   D+  N L+G++P
Sbjct:   557 DLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIP 616

Query:   121 A-CFSNLTSLRI-VSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
                 ++L ++++ ++  +N LT ++P     L+ +  ++ S+N  +  +P  +   K + 
Sbjct:   617 GELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVF 676

Query:   178 GIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXG 236
              +DFS NN SG IP E+  G+  +  L L  N   G IP SFG++              G
Sbjct:   677 TLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTG 736

Query:   237 AIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPC--K 294
              IP SL  LS L++L L+ N L+G +P  G F N +A    GN  LCGS    + PC  K
Sbjct:   737 EIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKK-PLKPCTIK 795

Query:   295 TSIHHTSWKNSLLLRIVLPLSTTFMIVVILLIL---RYQQRGKRPSNDANMPLVAT---W 348
                 H S +  ++L I+   +   ++++++LIL   + +++    S+++++P + +    
Sbjct:   796 QKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKL 855

Query:   349 RTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQ--CGRAFESFDV 406
             + F   EL +ATD F+  N+IG     +VYK +L D   +AVKV NL+     + + F  
Sbjct:   856 KRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKWFYT 915

Query:   407 ECEMMKNIRHRNLIKIL 423
             E + +  ++HRNL+KIL
Sbjct:   916 EAKTLSQLKHRNLVKIL 932

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2092810 BRL3 "BRI1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 7.7e-40, Sum P(2) = 7.7e-40
 Identities = 99/306 (32%), Positives = 151/306 (49%)

Query:     1 MSNCKSLTLIYLSNNPLDGILPKTSV-GNLSHSLEDFRMYNCNISGGIPEEISNLTNST- 58
             +SNCK L  + LS N L G +P     GN  + L    + +   SG IP E+S L  +  
Sbjct:   247 LSNCKLLETLNLSRNSLIGKIPGDDYWGNFQN-LRQLSLAHNLYSGEIPPELSLLCRTLE 305

Query:    59 IVNLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGS-IPDDICHLAELYRLDLDGNKLSG 117
             +++L GN L G +P + +           +NKL G  +   +  L+ +  L L  N +SG
Sbjct:   306 VLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISG 365

Query:   118 SLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKD--ILN-LNFSSNFLTSPLPLEIGNL 173
             S+P   +N ++LR++ L SN+ T  VP  F +L+   +L  L  ++N+L+  +P+E+G  
Sbjct:   366 SVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKC 425

Query:   174 KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG-DLIXXXXXXXXXX 232
             K L  ID S N  +G+IP EI  L  L  L +  N L G IP+S   D            
Sbjct:   426 KSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNN 485

Query:   233 XXXGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLQVP 291
                G++P S+ K + +  ++LS N L GEIP G G     +     GN  L G+   ++ 
Sbjct:   486 LLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQL-GNNSLTGNIPSELG 544

Query:   292 PCKTSI 297
              CK  I
Sbjct:   545 NCKNLI 550

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	499
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-08
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-08
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	9e-08
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-07
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-07
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-07
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-07
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-07
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	9e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-06
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	8e-06
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	8e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	7e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	3e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	3e-04
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	0.001
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.001
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	0.001
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	0.001
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	0.001
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	0.001
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	0.002
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	0.003
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	0.003
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	0.003
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.004
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.004
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (407), Expect = 3e-42
 Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 5/263 (1%)

Query: 4   CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLG 63
             SL  + LSNN   G +P+ S+ NL    E   + N  +SG IP +I + ++  +++LG
Sbjct: 117 SSSLRYLNLSNNNFTGSIPRGSIPNL----ETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172

Query: 64  GNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACF 123
           GN L G IP +L+ L  L+ L L  N+L G IP ++  +  L  + L  N LSG +P   
Sbjct: 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Query: 124 SNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
             LTSL  + L  N LT  +P +  NLK++  L    N L+ P+P  I +L+ LI +D S
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL 242
            N+ SG IP  +  L+NLE L L  N   G IP +   L  L+ L L +N  SG IP +L
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 243 EKLSYLENLNLSFNKLEGEIPRG 265
            K + L  L+LS N L GEIP G
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  156 bits (397), Expect = 7e-41
 Identities = 117/394 (29%), Positives = 182/394 (46%), Gaps = 23/394 (5%)

Query: 42  NISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICH 101
           N++G IPE + +  N   + L  N L G IP +L   + L+ + L+DN   G +P +   
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNF 161
           L  +Y LD+  N L G + +   ++ SL+++SL  NK        +  K + NL+ S N 
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486

Query: 162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
            +  +P ++G+L  L+ +  S N  SG IP E+   K L  L L +N+L G IP SF ++
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 222 ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 281
             L  L+LS N LSG IP +L  +  L  +N+S N L G +P  G+F   +A +  GN  
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606

Query: 282 LCGSPNLQ-VPPCKTSIHHTSW---KNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPS 337
           LCG      +PPCK      SW       L   ++     F  V I    R     KR  
Sbjct: 607 LCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIR--GRNNLELKRVE 664

Query: 338 NDANMPLVATWRTFSYLELFRAT-------DEFSENNLIGKGGFGSVYKAR-LGDRMEVA 389
           N+       TW    +      +           E N+I +G  G+ YK + + + M+  
Sbjct: 665 NED-----GTWELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFV 719

Query: 390 VKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
           VK  N        S   +   M  ++H N++K++
Sbjct: 720 VKEIN-DVNSIPSSEIAD---MGKLQHPNIVKLI 749

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (374), Expect = 7e-38
 Identities = 94/224 (41%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 42  NISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKL-QKLQGLGLEDNKLEGSIPDDIC 100
           NISG I   I  L     +NL  N+L+G IP  +      L+ L L +N   GSIP    
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-- 137

Query: 101 HLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSS 159
            +  L  LDL  N LSG +P    + +SL+++ LG N L   +P +  NL  +  L  +S
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 160 NFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG 219
           N L   +P E+G +K L  I    NN SG IP EIGGL +L +L L YN L G IP S G
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 220 DLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
           +L +L++L L  N LSG IP S+  L  L +L+LS N L GEIP
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (270), Expect = 9e-25
 Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 6/202 (2%)

Query: 73  ITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP-ACFSNLTSLRI 131
           IT +   ++  + L    + G I   I  L  +  ++L  N+LSG +P   F+  +SLR 
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 132 VSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI 190
           ++L +N  T S+P       + L+L  S+N L+  +P +IG+   L  +D   N   G I
Sbjct: 123 LNLSNNNFTGSIPRGSIPNLETLDL--SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 191 PTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLEN 250
           P  +  L +LE+L L  N+L G IP   G + SLK++ L  NNLSG IP  +  L+ L +
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 251 LNLSFNKLEGEIPRGGSFGNFS 272
           L+L +N L G IP   S GN  
Sbjct: 241 LDLVYNNLTGPIP--SSLGNLK 260

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
            + G+        G IP +I  L++L+ + L  N ++G+IP S G + SL+ L+LS N+ 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 235 SGAIPASLEKLSYLENLNLSFNKLEGEIPR--GGSFGNFSAESFEGNELLCGSPNLQVPP 292
           +G+IP SL +L+ L  LNL+ N L G +P   GG   + ++ +F  N  LCG P L    
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL--RA 536

Query: 293 CKTSIHHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQR 332
           C     H S      + I   +S  F+ +VI  +  +++R
Sbjct: 537 CGP---HLS--VGAKIGIAFGVSVAFLFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 32/81 (39%), Positives = 45/81 (55%)

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           + L    L G IP  +SKL+ LQ + L  N + G+IP  +  +  L  LDL  N  +GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 120 PACFSNLTSLRIVSLGSNKLT 140
           P     LTSLRI++L  N L+
Sbjct: 483 PESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 7e-13
 Identities = 34/82 (41%), Positives = 48/82 (58%)

Query: 40  NCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI 99
           N  + G IP +IS L +   +NL GN + G+IP +L  +  L+ L L  N   GSIP+ +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 100 CHLAELYRLDLDGNKLSGSLPA 121
             L  L  L+L+GN LSG +PA
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 68.1 bits (166), Expect = 3e-12
 Identities = 75/240 (31%), Positives = 106/240 (44%), Gaps = 32/240 (13%)

Query: 44  SGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLA 103
           S    E + NL     ++L  N+L  +I   L +L  L  L L++N +   IP  I  L 
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLK 139

Query: 104 -ELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFL 162
             L  LDL  NK+  SLP+   NL +L+ + L  N L+ +P    NL ++ NL+ S N +
Sbjct: 140 SNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI 222
           +                          +P EI  L  LE L L  N +   +  S  +L 
Sbjct: 199 SD-------------------------LPPEIELLSALEELDLSNNSII-ELLSSLSNLK 232

Query: 223 SLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL 282
           +L  L LSNN L   +P S+  LS LE L+LS N++   I   GS  N       GN L 
Sbjct: 233 NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 79/254 (31%), Positives = 115/254 (45%), Gaps = 14/254 (5%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLT-NSTI 59
           + N   L  + L+ N L   + +        SL    + N NI+  IP  I  L  N   
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELLELTNLTSL---DLDNNNITD-IPPLIGLLKSNLKE 144

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           ++L  NK+  S+P  L  L  L+ L L  N L   +P  + +L+ L  LDL GNK+S  L
Sbjct: 145 LDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 120 PACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           P     L++L  + L +N +  +  +  NLK++  L  S+N L   LP  IGNL  L  +
Sbjct: 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETL 260

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N  S    + +G L NL  L L  N L  ++P     L+ L+ L      L     
Sbjct: 261 DLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL---KA 315

Query: 240 ASLEKLSYLENLNL 253
             L+  S L N N+
Sbjct: 316 LELKLNSILLNNNI 329

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 83  GLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT-S 141
           GLGL++  L G IP+DI  L  L  ++L GN + G++P    ++TSL ++ L  N    S
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 142 VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGV--IP 191
           +P +   L  +  LN + N L+  +P  +G   +L    F+  + +G+  IP
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR-LLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 12  LSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSI 71
           L N  L G +P   +  L H L+   +   +I G IP  + ++T+  +++L  N  NGSI
Sbjct: 425 LDNQGLRGFIPND-ISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 72  PITLSKLQKLQGLGLEDNKLEGSIP 96
           P +L +L  L+ L L  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 75/248 (30%), Positives = 114/248 (45%), Gaps = 15/248 (6%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
            +LT + L NN +  I P   +   +    D      N    +P  + NL N   ++L  
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD---NKIESLPSPLRNLPNLKNLDLSF 172

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
           N L+  +P  LS L  L  L L  NK+   +P +I  L+ L  LDL  N +   L +  S
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS 229

Query: 125 NLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN 184
           NL +L  + L +NKL  +P +  NL ++  L+ S+N ++S     +G+L  L  +D S N
Sbjct: 230 NLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN 287

Query: 185 NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEK 244
           + S  +P     L  LE        L   +       + L  + L+NN LS    +S E 
Sbjct: 288 SLSNALPLIALLLLLLE-------LLLNLLLTLKALELKLNSILLNNNILSNGETSSPEA 340

Query: 245 LSYLENLN 252
           LS LE+LN
Sbjct: 341 LSILESLN 348

Length = 394

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 56.4 bits (137), Expect = 6e-09
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 369 IGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKI 422
           +G+G FG VYK  L     G   +VAVK           E F  E  +MK + H N+++ 
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVR- 65

Query: 423 LHGVAV 428
           L GV  
Sbjct: 66  LLGVCT 71

Length = 258

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 5/172 (2%)

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI-DF 181
             NL  L  + L  N+L S       L ++ +L+  +N +T  +P  IG LK  +   D 
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDL 147

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S N     +P+ +  L NL+ L L +N L   +P    +L +L  L+LS N +S  +P  
Sbjct: 148 SDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204

Query: 242 LEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPC 293
           +E LS LE L+LS N +   +    +  N S      N+L     ++     
Sbjct: 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Length = 394

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 369 IGKGGFGSVYKARLGDRME-VAVKVFNLQ-CGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           +G+GGFG+VY AR     + VA+K+   +      E    E E++K + H N++K L+GV
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVK-LYGV 59

Query: 427 AVITFTVCLCL 437
                 + L +
Sbjct: 60  FEDENHLYLVM 70

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 199 NLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
           NL+ L L  NRL      +F  L +LK L+LS NNL+   P +   L  L +L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 366 NNLIGKGGFGSVYKARLGD-----RMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNL 419
              +G+G FG VYK +L       ++EVAVK           E F  E  +M+ + H N+
Sbjct: 4   GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNV 63

Query: 420 IKILHGVAV 428
           +K L GV  
Sbjct: 64  VK-LLGVCT 71

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 367 NLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAF-ESFDVECEMMKNIRHRNLIKILH 424
             +G+G FG VY AR       VA+KV   +  +   E    E +++K ++H N++++  
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYD 64

Query: 425 GVAVITFTVCLCLF 438
              V      L L 
Sbjct: 65  ---VFEDEDKLYLV 75

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 52.9 bits (128), Expect = 9e-08
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 366 NNLIGKGGFGSVYKARLGD-----RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNL 419
              +G+G FG VYK  L        +EVAVK        +  E F  E  +M+ + H N+
Sbjct: 4   GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNI 63

Query: 420 IKILHGVAV 428
           +K L GV  
Sbjct: 64  VK-LLGVCT 71

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
           +++     IG G +G VYKAR     E VA+KV  L+ G  FE    E  M+K  RH N+
Sbjct: 3   EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNI 62

Query: 420 IKILH 424
           +    
Sbjct: 63  VAYFG 67

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDV----ECEMMKNIRHRNLIKIL 423
           +G G FG+VYKA+  G    VAVK+   +        D     E  +++ + H N+++++
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKR--SEKSKKDQTARREIRILRRLSHPNIVRLI 64

Query: 424 H 424
            
Sbjct: 65  D 65

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 362 EFSENNLIGKGGFGSVYKARL---GDRMEVAVKVFNLQCGRA--FESFDVECEMMKNIRH 416
           E++   L+G+G FGSVY A     G+ M  AVK   L        E+ + E  ++ +++H
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELM--AVKSVELSGDSEEELEALEREIRILSSLQH 58

Query: 417 RNLIKILHGVAVITFTVCLCLF 438
            N+++   G         L +F
Sbjct: 59  PNIVRYY-GSERDEEKNTLNIF 79

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
           IGKGGFG VYKAR      EVA+KV  L+     E    E +++K  +H N++K  
Sbjct: 8   IGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYY 63

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 12/77 (15%)

Query: 367 NLIGKGGFGSVYKARL----GDRMEVAVKV----FNLQCGRAFESFDVECEMMKNIRHRN 418
             +G+G FG VYK +L    G   EVAVK      + +  + F     E  +MK + H N
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLK---EARVMKKLGHPN 57

Query: 419 LIKILHGVAVITFTVCL 435
           ++++L GV      + L
Sbjct: 58  VVRLL-GVCTEEEPLYL 73

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 172 NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN 231
           NLK L   D S N  + +      GL NL+ L L  N L    P++F  L SL+ L+LS 
Sbjct: 1   NLKSL---DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 232 NNL 234
           NNL
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 369 IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIK 421
           +G+G FG V+           D+  VAVK         A + F+ E E++ N +H N++K
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 422 ILHGVAV 428
             +GV  
Sbjct: 73  -FYGVCT 78

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
           R  +EF+    +G G FG V++    +R+ VA+K+         + F  E + +K +RH+
Sbjct: 3   RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHK 62

Query: 418 NLIKILHGV 426
           +LI  L  V
Sbjct: 63  HLIS-LFAV 70

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 368 LIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAF-----ESFDVECEMMKNIRHRNLIKI 422
            IGKG FG VYK  L    EVAVK     C           F  E E++K   H N++K+
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKT----CRSTLPPDLKRKFLQEAEILKQYDHPNIVKL 57

Query: 423 LHGVAV 428
           + GV V
Sbjct: 58  I-GVCV 62

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 367 NLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCGRAFES-FDVECEMMKNIRHRNLI 420
             +G+G FG V   R          +VAVK  N        S F+ E E+++ + H N++
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIV 69

Query: 421 KILHGVA 427
           K   GV 
Sbjct: 70  K-YKGVC 75

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 185 NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEK 244
            + G+       + +++   L    + G I  +   L  ++ +NLSNN LSG IP  +  
Sbjct: 59  LWQGITCNNSSRVVSID---LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT 115

Query: 245 LSY-LENLNLSFNKLEGEIPRGGSFG 269
            S  L  LNLS N   G IPRG    
Sbjct: 116 TSSSLRYLNLSNNNFTGSIPRGSIPN 141

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +S  + L  I LS N + G +P  S+G+++ SLE   +   + +G IPE +  LT+  I+
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIP-PSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRIL 495

Query: 61  NLGGNKLNGSIPITL 75
           NL GN L+G +P  L
Sbjct: 496 NLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           L  LDL  N+L+      F  L +L+++ L  N LTS+    F  L  + +L+ S N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 369 IGKGGFGSVYKA-RLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
           IG+G  G VYKA       EVA+K   L+     E    E  +MK+ +H N++ 
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRLRKQNK-ELIINEILIMKDCKHPNIVD 79

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 366 NNLIGKGGFGSVYKA----RLGDRMEVAVKVFNLQCGRAF-ESFDVECEMMKNIRHRNLI 420
              IG+G FG VY+        +++ VAVK        +  E F  E  +M+   H +++
Sbjct: 11  GRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIV 70

Query: 421 KIL 423
           K++
Sbjct: 71  KLI 73

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVA-VKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
           ++F     IG G +G VYKAR  +  E+A +KV  L+ G  F     E  MMK+ +H N+
Sbjct: 9   EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNI 68

Query: 420 I 420
           +
Sbjct: 69  V 69

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 7/62 (11%)

Query: 367 NLIGKGGFGSVYKA---RLGDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRHRNLIK 421
           +LIG+G FG VYK      GD   VA+K  +L+     A +S   E +++KN++H N++K
Sbjct: 6   DLIGRGAFGVVYKGLNLETGDF--VAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVK 63

Query: 422 IL 423
            +
Sbjct: 64  YI 65

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 369 IGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDV----ECEMMKNIRHRNLIKI 422
           IG+G +G VYKAR     E VA+K   ++  +  E F +    E ++++ +RH N++++
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRMENEK--EGFPITAIREIKLLQKLRHPNIVRL 63

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVA---VKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
           IGKG F  VYKA  L D   VA   V++F +   +A +    E +++K + H N+IK L
Sbjct: 10  IGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYL 68

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
           IG+G FG+V +   G+     V V N++C    ++F  E  +M  + H+NL+++L
Sbjct: 14  IGEGEFGAVLQ---GEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLL 65

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 367 NLIGKGGFGSVYKARLGDRMEV-AVKVFNLQCGR--AFESFDVECEMMKNIRHRNLIKIL 423
           N IG G FG VY A   D  E+ AVK   +Q       +    E ++++ ++H NL+K  
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK-Y 64

Query: 424 HGVAV 428
           +GV V
Sbjct: 65  YGVEV 69

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 367 NLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDV--ECEMMKNIRHRNLIK 421
             IGKG FG VY  R   D     +K  +L      E  D   E +++K + H N+IK
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIK 63

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)

Query: 368 LIGKGGFGSVYKARL----GDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRHRNLIK 421
           ++G+G FGSV + +L    G +++VAVK   L        E F  E   MK+  H N++K
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 422 ILHGVAV 428
           ++ GV  
Sbjct: 66  LI-GVCF 71

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRA-FESFDVECEMMKNIRHRNLIKILHGVA 427
           +G G FG V++    +   VAVK   L+ G    + F  E ++MK +RH  LI++    A
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVK--TLKPGTMDPKDFLAEAQIMKKLRHPKLIQLY---A 68

Query: 428 VIT 430
           V T
Sbjct: 69  VCT 71

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 368 LIGKGGFGSVYKARLGDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKIL 423
            IGKG FG V       + +VAVK   L+    A ++F  E  +M  +RH NL+++L
Sbjct: 13  TIGKGEFGDVMLGDYRGQ-KVAVK--CLKDDSTAAQAFLAEASVMTTLRHPNLVQLL 66

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 368 LIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE-SFDVECEMMKNIRHRNLIKIL 423
           L+GKG FG V+K  L D+  VAVK       +  +  F  E  ++K   H N++K++
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLI 58

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL 395
           + F+    IGKG FG VYKA        VA+KV +L
Sbjct: 1   ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDL 36

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 31/150 (20%)

Query: 6   SLTLIYLSNNPL-DGILPK--TSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
           SL  + L+NN L D  L      + +L  +LE   +    + G   E ++          
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-------- 160

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC----HLAELYRLDLDGNKL--- 115
                       L   + L+ L L +N +  +    +         L  LDL+ N L   
Sbjct: 161 ------------LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208

Query: 116 -SGSLPACFSNLTSLRIVSLGSNKLTSVPL 144
            + +L    ++L SL +++LG N LT    
Sbjct: 209 GASALAETLASLKSLEVLNLGDNNLTDAGA 238

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 368 LIGKGGFGSV----YKARLGDRMEVAVKVF-NLQCGRAFESFDVECEMMKNIRHRNLIKI 422
            +G G FG V    +    G  + VAVK   + +     + F  E  +M ++ H NLI+ 
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIR- 60

Query: 423 LHGV 426
           L+GV
Sbjct: 61  LYGV 64

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 362 EFSENN---LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
           E+ EN    ++GKG +G VY AR L  ++ +A+K    +  R  +    E  +   ++HR
Sbjct: 6   EYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHR 65

Query: 418 NLIKILHGVAV 428
           N+++ L   + 
Sbjct: 66  NIVQYLGSDSE 76

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 369 IGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIR-------HRNLI 420
           +G G FGSVY AR  +  E VA+K       + F S++ EC  ++ ++       H N++
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMK----KKFYSWE-ECMNLREVKSLRKLNEHPNIV 61

Query: 421 KIL 423
           K+ 
Sbjct: 62  KLK 64

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 15/66 (22%)

Query: 367 NLIGKGGFGSVYKA---RLGDRMEVAVKVFNLQCGRAFES-FDV-----ECEMMKNIRHR 417
             IG G +G V  A   R G +  VA+K    +    F+   D      E ++++++RH 
Sbjct: 6   KPIGSGAYGVVCSAVDKRTGRK--VAIK----KISNVFDDLIDAKRILREIKLLRHLRHE 59

Query: 418 NLIKIL 423
           N+I +L
Sbjct: 60  NIIGLL 65

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	499
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.82
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.82
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.81
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.79
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.79
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.79
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.79
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.78
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.78
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.77
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.77
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.77
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.76
KOG3653	534	consensus Transforming growth factor beta/activin	99.75
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.75
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.74
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.73
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.73
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.73
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.71
KOG0605	550	consensus NDR and related serine/threonine kinases	99.71
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.71
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.71
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.71
KOG0198	313	consensus MEKK and related serine/threonine protei	99.7
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.69
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.69
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.68
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.68
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.68
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.68
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.68
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.67
KOG0586	596	consensus Serine/threonine protein kinase [General	99.66
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.66
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.66
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.65
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.65
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.65
KOG0578	550	consensus p21-activated serine/threonine protein k	99.65
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.65
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.64
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.64
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.64
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.64
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.64
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.64
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.64
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.64
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.64
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.63
PRK09188	365	serine/threonine protein kinase; Provisional	99.63
PHA03212	391	serine/threonine kinase US3; Provisional	99.63
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.63
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.63
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.63
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.63
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.62
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.62
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.62
PTZ00036	440	glycogen synthase kinase; Provisional	99.62
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.62
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.62
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.62
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.62
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.62
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.62
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.62
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.61
PHA02988	283	hypothetical protein; Provisional	99.61
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.61
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.61
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.61
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.61
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.61
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.6
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.6
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.6
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.6
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.6
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.6
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.6
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.6
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.6
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.6
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.6
KOG0610	459	consensus Putative serine/threonine protein kinase	99.59
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.59
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.59
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.59
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.59
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.59
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.59
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.59
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.59
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.59
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.58
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.58
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.58
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.58
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.58
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.58
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.58
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.58
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.58
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.58
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.58
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.58
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.57
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.57
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.57
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.57
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.57
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.57
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.57
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.57
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.57
PHA03211	461	serine/threonine kinase US3; Provisional	99.57
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.57
PTZ00267	478	NIMA-related protein kinase; Provisional	99.57
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.56
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.56
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.56
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.56
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.56
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.56
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.56
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.56
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.56
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.55
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.55
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.55
PHA03209	357	serine/threonine kinase US3; Provisional	99.55
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.55
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.55
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.55
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.55
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.55
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.55
PTZ00283	496	serine/threonine protein kinase; Provisional	99.55
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.55
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.55
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.55
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.55
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.55
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.55
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.55
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.55
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.54
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.54
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.54
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.54
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.54
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.54
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.54
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.54
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.54
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.54
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.54
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.54
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.54
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.54
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.54
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.54
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.54
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.54
PLN03150	623	hypothetical protein; Provisional	99.54
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.54
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.54
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.54
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.54
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.54
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.54
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.53
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.53
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.53
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.53
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.53
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.53
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.53
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.53
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.53
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.53
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.53
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.53
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.53
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.53
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.53
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.53
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.53
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.53
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.53
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.53
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.53
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.53
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.53
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.53
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.53
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.52
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.52
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.52
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.52
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.52
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.52
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.52
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.52
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.52
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.52
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.52
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.52
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.52
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.52
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.52
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.52
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.52
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.52
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.52
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.52
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.52
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.52
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.51
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.51
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.51
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.51
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.51
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.51
PLN00009	294	cyclin-dependent kinase A; Provisional	99.51
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.51
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.51
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.51
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.51
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.51
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.51
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.51
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.51
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.51
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.5
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.5
PHA03207	392	serine/threonine kinase US3; Provisional	99.5
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.5
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.5
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.5
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.5
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.5
KOG0589	426	consensus Serine/threonine protein kinase [General	99.5
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.5
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.5
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.5
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.5
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.5
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.5
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.5
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.5
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.49
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.49
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.49
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.49
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.49
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.49
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.49
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.49
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.49
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.49
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.49
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.49
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.49
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.49
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.49
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.49
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.49
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.49
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.49
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.49
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.49
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.48
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.48
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.48
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.48
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.48
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.48
PHA03210	501	serine/threonine kinase US3; Provisional	99.48
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.48
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.48
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.48
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.48
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.48
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.48
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.48
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.48
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.48
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.48
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.48
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.48
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.48
KOG1152	772	consensus Signal transduction serine/threonine kin	99.47
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.47
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.47
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.47
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.47
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.47
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.47
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.47
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.47
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.47
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.47
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.46
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.46
PTZ00284	467	protein kinase; Provisional	99.46
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.46
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.46
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.46
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.46
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.46
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.46
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.45
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.45
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.45
KOG0584	632	consensus Serine/threonine protein kinase [General	99.45
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.45
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.45
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.45
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.45
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.45
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.45
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.44
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.44
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.44
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.44
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.43
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.43
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.43
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.43
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.43
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.43
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.43
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.43
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.43
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.43
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.42
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.42
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.42
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.42
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.42
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.42
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.42
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.42
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.42
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.42
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.41
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.41
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.41
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.41
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.41
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.4
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.4
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.4
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.4
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.39
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.39
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.38
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.38
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.37
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.37
PRK10345	210	hypothetical protein; Provisional	99.37
PHA02882	294	putative serine/threonine kinase; Provisional	99.36
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.36
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.35
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.35
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.35
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.35
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.35
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.35
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.34
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.32
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.3
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.3
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.28
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.28
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.27
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.27
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.26
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.26
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.26
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.24
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.24
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.23
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.22
PLN03150	623	hypothetical protein; Provisional	99.21
smart00090	237	RIO RIO-like kinase.	99.19
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.16
PRK14879	211	serine/threonine protein kinase; Provisional	99.15
PRK12274	218	serine/threonine protein kinase; Provisional	99.13
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.13
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.13
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.12
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.12
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.1
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.03
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.03
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.97
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.94
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.94
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.93
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.91
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.9
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	98.89
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.87
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	98.83
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.76
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.66
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.57
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.56
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.44
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.43
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.36
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.35
PRK15386	426	type III secretion protein GogB; Provisional	98.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.33
PRK15386	426	type III secretion protein GogB; Provisional	98.25
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.74
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.71
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.61
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.61
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.45
PLN00181	793	protein SPA1-RELATED; Provisional	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.41
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.27
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.14
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.02

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.7e-54  Score=474.78  Aligned_cols=476  Identities=26%  Similarity=0.411  Sum_probs=323.8

Q ss_pred             CCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCcc------------
Q 010856            3 NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGS------------   70 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------------   70 (499)
                      ++++|+.|++++|.+++..|. .+..++ +|+.|++++|.+++..|..+..+++|+.|++++|++++.            
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~-~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  383 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPV-ALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF  383 (968)
T ss_pred             CCCCCcEEECCCCccCCcCCh-hHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence            455666666666666555554 445555 556666655555555555555555555555555555444            


Q ss_pred             ------------CCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccC
Q 010856           71 ------------IPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNK  138 (499)
Q Consensus        71 ------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  138 (499)
                                  .|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus       384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  463 (968)
T PLN00113        384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK  463 (968)
T ss_pred             EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence                        44445555556666666666555555556666666666666666666666555666666666666666


Q ss_pred             CCC-CCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcc
Q 010856          139 LTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS  217 (499)
Q Consensus       139 l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  217 (499)
                      +.. +|. ....++|+.|++++|++++..|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..
T Consensus       464 ~~~~~p~-~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        464 FFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             eeeecCc-ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence            665 333 334577888888888888888888899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCCC-CCCCCCCCCC
Q 010856          218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP-NLQVPPCKTS  296 (499)
Q Consensus       218 l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~~-~~~~~~~~~~  296 (499)
                      |..+++|+.|++++|++++..|..+..+++|+.+++++|++++.+|....+..+....+.||+.+|+.+ ....++|...
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~  622 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV  622 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccc
Confidence            999999999999999999999999999999999999999999999998888888888999999999864 3345667532


Q ss_pred             ccccccccccceeeeccchhhhHHHHHHHH-HHhhhcCCCCCCC-C--CCc----ccc--cccccCHHHHHHHhhhcccc
Q 010856          297 IHHTSWKNSLLLRIVLPLSTTFMIVVILLI-LRYQQRGKRPSND-A--NMP----LVA--TWRTFSYLELFRATDEFSEN  366 (499)
Q Consensus       297 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~----~~~--~~~~~~~~~~~~~~~~~~~~  366 (499)
                      .    +....+++++++++++++++++++. ++++++++..... .  ...    ...  ....++.+++   ...+...
T Consensus       623 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  695 (968)
T PLN00113        623 R----KTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDI---LSSLKEE  695 (968)
T ss_pred             c----ccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHH---HhhCCcc
Confidence            1    1112222222222222222222222 2222222111110 0  000    000  1122333333   3457778


Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCCc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASA  445 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~  445 (499)
                      +++|+|+||.||+|+. .++..||||+++....    ...+|++++++++|||||+++|+|...+  ..++++||+.++.
T Consensus       696 ~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~~l~~l~HpnIv~~~~~~~~~~--~~~lv~Ey~~~g~  769 (968)
T PLN00113        696 NVISRGKKGASYKGKSIKNGMQFVVKEINDVNS----IPSSEIADMGKLQHPNIVKLIGLCRSEK--GAYLIHEYIEGKN  769 (968)
T ss_pred             cEEccCCCeeEEEEEECCCCcEEEEEEccCCcc----ccHHHHHHHhhCCCCCcceEEEEEEcCC--CCEEEEeCCCCCc
Confidence            8999999999999996 5789999999865432    1235688999999999999999997744  3456778876554


Q ss_pred             cc-ccc-ccccccccccccccccceeecc---------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          446 SA-SLV-SSLTLSRPAKGGGFRGCVLWHV---------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       446 ~~-~l~-~~~~~~~~~~~~i~~gl~yLH~---------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      .. .++ ..+.....++.|+|+||+|||.         ++||.|++++.++.+++ +||..
T Consensus       770 L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~-~~~~~  829 (968)
T PLN00113        770 LSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL-RLSLP  829 (968)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEE-Eeccc
Confidence            33 332 2344456678999999999993         68899999876655544 46654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.1e-33  Score=308.62  Aligned_cols=283  Identities=35%  Similarity=0.544  Sum_probs=229.7

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKL   81 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   81 (499)
                      .++++|++|++++|.+.+..|. .+..++ +|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus       281 ~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L  358 (968)
T PLN00113        281 FSLQKLISLDLSDNSLSGEIPE-LVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL  358 (968)
T ss_pred             hhccCcCEEECcCCeeccCCCh-hHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence            4688999999999999988887 777888 89999999999999999999999999999999999998899999999999


Q ss_pred             CeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC-CCccccCCCCCcEEEcCCC
Q 010856           82 QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSN  160 (499)
Q Consensus        82 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n  160 (499)
                      +.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|+++. +|..+..+++|+.|++++|
T Consensus       359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  438 (968)
T PLN00113        359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN  438 (968)
T ss_pred             cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence            999999999987777777777777777777777666666666666666666666666654 4545555555555555555


Q ss_pred             cCCCCCccccc-----------------------CCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcc
Q 010856          161 FLTSPLPLEIG-----------------------NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS  217 (499)
Q Consensus       161 ~l~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  217 (499)
                      .+++..+..+.                       ..++|+.|++++|++++..|..+..+++|++|++++|++.+..|..
T Consensus       439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  518 (968)
T PLN00113        439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE  518 (968)
T ss_pred             cccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence            55444333322                       2356777777777777778888888899999999999999889999


Q ss_pred             ccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCC
Q 010856          218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       218 l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~  286 (499)
                      +..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+..+..+++.+|++.+..|
T Consensus       519 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999999999999999999999888865 456778899999999877554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-35  Score=279.38  Aligned_cols=286  Identities=22%  Similarity=0.222  Sum_probs=178.0

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKL   81 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   81 (499)
                      +.++.|++||||.|.|+.+... .+..-+ ++++|+|++|.|+.+..+.|.++.+|.+|.|+.|+|+...+..|.++++|
T Consensus       146 ~~l~alrslDLSrN~is~i~~~-sfp~~~-ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  146 SALPALRSLDLSRNLISEIPKP-SFPAKV-NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL  223 (873)
T ss_pred             HhHhhhhhhhhhhchhhcccCC-CCCCCC-CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence            3456677777777777755333 444433 67777777777777777777777777777777777776666677777777


Q ss_pred             CeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCC-ccccCCCCCcEEEcCCC
Q 010856           82 QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSN  160 (499)
Q Consensus        82 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n  160 (499)
                      +.|+|..|+|.-...-.|.++++|+.|.|..|.+.....+.|..+.++++|+|..|++..+. .+++++++|+.|++++|
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            77777777776444455666666666666666666555556666666666666666655543 24555555555555555


Q ss_pred             cCCCCCcccccCCCCccEEEccCCcccccCccc------------------------ccCCcCCceeeCcCCcCCCCC--
Q 010856          161 FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTE------------------------IGGLKNLEYLFLGYNRLQGSI--  214 (499)
Q Consensus       161 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------l~~l~~L~~L~L~~n~l~~~~--  214 (499)
                      .|..+.++.+...++|+.|+|++|+|+...+..                        |.++++|++|||++|.++..+  
T Consensus       304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            555555555555555555555555555544444                        445555555555555554322  


Q ss_pred             -CccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCCCCCC
Q 010856          215 -PDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQ  289 (499)
Q Consensus       215 -~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~~~~~  289 (499)
                       ...|.++++|+.|++.+|+|..+.-.+|.+++.|+.|||.+|.|.+.-|....-..++.+-+..-.++|+|...|
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHH
Confidence             234556666666666666666666666666777777777777766655554333355666666666789885433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=276.34  Aligned_cols=276  Identities=23%  Similarity=0.245  Sum_probs=252.6

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      .+|+.|+|.+|.|+.+... .+..+| .|++|||+.|.|+.+.-.+|..-.++++|+|++|+|+.+..+.|.++.+|..|
T Consensus       125 ghl~~L~L~~N~I~sv~se-~L~~l~-alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSE-ELSALP-ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL  202 (873)
T ss_pred             cceeEEeeeccccccccHH-HHHhHh-hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence            4699999999999988776 888888 89999999999998887888888899999999999999999999999999999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCCCcCC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~  163 (499)
                      .|+.|+++...+..|.++++|+.|+|..|+|.-..--+|.++++|+.|.|..|.|..+.+ .|+.+.++++|+|..|++.
T Consensus       203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence            999999998888899999999999999999996656789999999999999999999755 6889999999999999999


Q ss_pred             CCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCccccc
Q 010856          164 SPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLE  243 (499)
Q Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  243 (499)
                      ......+-+++.|+.|++|+|.|..+.++.++..++|++|+|++|+|+...++.|..+..|+.|+|++|.+.......|.
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence            98888999999999999999999999999999999999999999999999999999999999999999999988888999


Q ss_pred             CCCCCCEEEccCCcCcccCCCC----CCCCCccccccCCCcCC
Q 010856          244 KLSYLENLNLSFNKLEGEIPRG----GSFGNFSAESFEGNELL  282 (499)
Q Consensus       244 ~l~~L~~L~l~~N~l~~~~~~~----~~~~~l~~~~l~~N~~~  282 (499)
                      .+++|++|||+.|.++..+...    ..++.++.+.+.||...
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence            9999999999999998766543    23677888888888753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=1.2e-29  Score=244.88  Aligned_cols=276  Identities=27%  Similarity=0.413  Sum_probs=219.3

Q ss_pred             CCCCCCCCEEECcCCCCCcc-CChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCC
Q 010856            1 MSNCKSLTLIYLSNNPLDGI-LPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQ   79 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   79 (499)
                      ++.+|.|+.+++..|++... +|. .+..+. .|..|+|++|+++ ..|..+...+++-.|+|++|+|..++...|.++.
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~-diF~l~-dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPT-DIFRLK-DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCc-hhcccc-cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence            35667777777777776432 232 455566 6888888888887 6677787788888888888888866666677888


Q ss_pred             CCCeEecccccccccCCccccCcccccEEeeecCCCC-------------------------CcCCccccCCccCCeeec
Q 010856           80 KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS-------------------------GSLPACFSNLTSLRIVSL  134 (499)
Q Consensus        80 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L  134 (499)
                      .|-.||||+|++. .+|..+..+..|++|.|++|.+.                         ..+|.++..+.+|..+|+
T Consensus       151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            8888888888887 55666777777888888887653                         134556667778888888


Q ss_pred             cccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCC-C
Q 010856          135 GSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-S  213 (499)
Q Consensus       135 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~  213 (499)
                      +.|.+..+|..+..+++|+.|+||+|.|+. .........+|++|++|.|+++ ..|..+..++.|+.|++.+|+++- -
T Consensus       230 S~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG  307 (1255)
T KOG0444|consen  230 SENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG  307 (1255)
T ss_pred             cccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence            999888888888889999999999998885 3445566788899999999988 678889999999999999998763 3


Q ss_pred             CCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCC
Q 010856          214 IPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC  283 (499)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c  283 (499)
                      +|..++.+.+|+.+..++|.+. ..|+.++.+..|+.|.|+.|++.+.+.....++.+..+++..||.+.
T Consensus       308 iPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  308 IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             CccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence            5788899999999999999988 88999999999999999999999665555678899999999998655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-28  Score=222.56  Aligned_cols=276  Identities=23%  Similarity=0.236  Sum_probs=221.6

Q ss_pred             EECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEeccc-
Q 010856           10 IYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLED-   88 (499)
Q Consensus        10 L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-   88 (499)
                      .+.++-.++.+ |.    ++|+.-..++|..|+|+.+.+.+|+.+++|+.|||++|+|+.+.|++|.++++|..|-+.+ 
T Consensus        51 VdCr~~GL~eV-P~----~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLTEV-PA----NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcccC-cc----cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence            34445555533 32    4677899999999999999999999999999999999999999999999999988877766 


Q ss_pred             ccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCCCcCC----
Q 010856           89 NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLT----  163 (499)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~----  163 (499)
                      |+|+.+..+.|.++.+|+.|.+.-|++.-+..+.|..+++|..|.+..|.+..++. .+..+.+++.+.+..|.+-    
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            89998878889999999999999999998888899999999999999999998887 7888888999988888732    


Q ss_pred             --------CCCcccccCCCCccEEEccCCc--------------------------ccccCcccccCCcCCceeeCcCCc
Q 010856          164 --------SPLPLEIGNLKVLIGIDFSMNN--------------------------FSGVIPTEIGGLKNLEYLFLGYNR  209 (499)
Q Consensus       164 --------~~~~~~~~~l~~L~~L~l~~n~--------------------------l~~~~~~~l~~l~~L~~L~L~~n~  209 (499)
                              ...+..++.........+.+++                          ........|..+++|+.|+|++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                    1122222222222111121111                          111223457889999999999999


Q ss_pred             CCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCCCC
Q 010856          210 LQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNL  288 (499)
Q Consensus       210 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~~~  288 (499)
                      |+++.+.+|.+...+++|.|..|+|.......|.++..|+.|+|.+|+|+...|.. .....+..+.+.+|||.|+|...
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            99999999999999999999999999888889999999999999999999887765 34567888999999999999654


Q ss_pred             CC
Q 010856          289 QV  290 (499)
Q Consensus       289 ~~  290 (499)
                      |+
T Consensus       366 wl  367 (498)
T KOG4237|consen  366 WL  367 (498)
T ss_pred             HH
Confidence            43

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=9.3e-28  Score=232.00  Aligned_cols=256  Identities=28%  Similarity=0.386  Sum_probs=142.6

Q ss_pred             cccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCc-cCCccccCCCCCCeEecccccccccCCccccCccc
Q 010856           26 VGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNG-SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAE  104 (499)
Q Consensus        26 ~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  104 (499)
                      ++.+. +|++|.+++|++..+ ...++.++.|+.+.+.+|++.. -+|..+..+..|+.||||+|++. ..|..+...++
T Consensus        51 L~~lq-kLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn  127 (1255)
T KOG0444|consen   51 LSRLQ-KLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKN  127 (1255)
T ss_pred             HHHHh-hhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcC
Confidence            34443 455555555555522 2335555555555555555543 12344455666666666666666 45556666666


Q ss_pred             ccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCC-------------------
Q 010856          105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSP-------------------  165 (499)
Q Consensus       105 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------  165 (499)
                      +-.|+|++|+|..++...|.+++.|-.|||++|++..+|+.+..+..|++|+|++|.+...                   
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence            6666666666665555556666666666666666666666666666666666666655432                   


Q ss_pred             ------CcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCc
Q 010856          166 ------LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP  239 (499)
Q Consensus       166 ------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  239 (499)
                            +|..+..+.+|..+|+|.|.+. ..|+.+-.+++|+.|+||+|+|+. .........+|+.|++|.|+++ ..|
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP  284 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLP  284 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cch
Confidence                  3344444455555555555554 445555555555555555555552 2223333445555555555555 556


Q ss_pred             ccccCCCCCCEEEccCCcCc--ccCCCCCCCCCccccccCCCcC------CCCCCC
Q 010856          240 ASLEKLSYLENLNLSFNKLE--GEIPRGGSFGNFSAESFEGNEL------LCGSPN  287 (499)
Q Consensus       240 ~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~~~l~~~~l~~N~~------~c~~~~  287 (499)
                      +++.++++|+.|++.+|+++  |.+...+.+..+..+....|..      +|.|+.
T Consensus       285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~k  340 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVK  340 (1255)
T ss_pred             HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHH
Confidence            66666677777777776664  3333334455555555555542      566654

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.7e-25  Score=213.36  Aligned_cols=150  Identities=31%  Similarity=0.395  Sum_probs=126.1

Q ss_pred             cccccCHHHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeE
Q 010856          347 TWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV  426 (499)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~  426 (499)
                      ....|+++++..+|++|...+.||+|+||.||+|...+|+.||||++........++|.+|++++.+++|||+|+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            46679999999999999999999999999999999988899999988765432145699999999999999999999999


Q ss_pred             EccccceeeeeecccCCC-ccccccc------cccccccccccccccceeecc---------CCCcccEEEeeCCCeEEE
Q 010856          427 AVITFTVCLCLFHHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV---------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       427 ~~~~~~~~~~l~~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~---------~~~p~~~l~~~~~~~~~~  490 (499)
                      .+.+. ...+++|||.++ +.+.++.      .|..+.+||.++|+||+|||+         ++||.|||++.+..+|++
T Consensus       141 ~e~~~-~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKls  219 (361)
T KOG1187|consen  141 LEGGE-HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLS  219 (361)
T ss_pred             ecCCc-eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEcc
Confidence            87543 467789999654 4344332      455677889999999999998         567788899989999999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||+++.
T Consensus       220 DFGLa~~  226 (361)
T KOG1187|consen  220 DFGLAKL  226 (361)
T ss_pred             CccCccc
Confidence            9999864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=3.5e-27  Score=217.09  Aligned_cols=264  Identities=31%  Similarity=0.446  Sum_probs=224.5

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      .|+.|.+++|.+....+  .+.++. .|..|++.+|+++ ..|.+++.+..++.|+.++|++. ..|..+..+.+|..|+
T Consensus        46 ~l~~lils~N~l~~l~~--dl~nL~-~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE--DLKNLA-CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             chhhhhhccCchhhccH--hhhccc-ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            46778899999886655  466777 7999999999998 56778888899999999999988 6778888899999999


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSP  165 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (499)
                      .++|.+. ..++.++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|+++.+|+..-.++.|++||...|.++ .
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-c
Confidence            9999988 66777888889999999999998 5667788888999999999999998887777899999999999887 4


Q ss_pred             CcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCC
Q 010856          166 LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKL  245 (499)
Q Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l  245 (499)
                      +|..++.+.+|..|++.+|+|. ..| .|.++..|.+|+++.|+|.-...+...+++++..||+.+|+++ ..|+.+..+
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL  274 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL  274 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence            7778899999999999999998 445 7899999999999999998444445568999999999999998 678888889


Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCccccccCCCcC
Q 010856          246 SYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       246 ~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~  281 (499)
                      .+|..||+|+|.+++..+..+.+ .+..+.+.|||.
T Consensus       275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            99999999999999887777766 788888999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=4.5e-26  Score=209.48  Aligned_cols=278  Identities=23%  Similarity=0.259  Sum_probs=226.2

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccC-CcCCccCCccccCCCCCCeE
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG-NKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L   84 (499)
                      .-.+++|+.|.|+.+++. .|+.++ +|+.|||++|+|+.+-|++|.++++|.+|-+-+ |+|+.+..+.|.++..|+.|
T Consensus        68 ~tveirLdqN~I~~iP~~-aF~~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPG-AFKTLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChh-hccchh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            457899999999977766 999999 999999999999999999999999998887666 99998888999999999999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC---C----------CccccCCC-
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS---V----------PLTFWNLK-  150 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~----------~~~~~~l~-  150 (499)
                      .+.-|++.-+..+.|..+++|..|.+.+|.+..+...+|..+..++.+.+..|.+-.   +          |..++... 
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            999999998888899999999999999999997666699999999999998887321   1          11111110 


Q ss_pred             ---------------------CCcEE----EcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeC
Q 010856          151 ---------------------DILNL----NFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL  205 (499)
Q Consensus       151 ---------------------~L~~L----~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  205 (499)
                                           .++.+    ....+....-....|..+++|++|+|++|+|+++-+.+|.++..+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                                 11111    11112222223356889999999999999999999999999999999999


Q ss_pred             cCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCC
Q 010856          206 GYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       206 ~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~  285 (499)
                      ..|+|..+....|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++.+...-.+...+++.-...||| -|..
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~-~Cq~  384 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP-RCQS  384 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC-CCCC
Confidence            999999888889999999999999999999999999999999999999999998755444333344444455555 4544


Q ss_pred             C
Q 010856          286 P  286 (499)
Q Consensus       286 ~  286 (499)
                      |
T Consensus       385 p  385 (498)
T KOG4237|consen  385 P  385 (498)
T ss_pred             C
Confidence            3

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=3.1e-26  Score=210.85  Aligned_cols=247  Identities=29%  Similarity=0.443  Sum_probs=223.1

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKL   81 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   81 (499)
                      .++..|++|++++|+++..+|  +++.+. .++.|+.++|+++ .+|+.+.++.+|..|++++|.+. ..++.++.+..|
T Consensus        65 ~nL~~l~vl~~~~n~l~~lp~--aig~l~-~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l  139 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLSQLPA--AIGELE-ALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL  139 (565)
T ss_pred             hcccceeEEEeccchhhhCCH--HHHHHH-HHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence            467889999999999996654  677777 8999999999998 78889999999999999999998 567778999999


Q ss_pred             CeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCc
Q 010856           82 QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNF  161 (499)
Q Consensus        82 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  161 (499)
                      +.|+..+|++. ..|..+.++.+|..|++.+|.+....|.... ++.|++||...|-++.+|..++.+.+|+-|++..|+
T Consensus       140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence            99999999998 5677888999999999999999976666655 999999999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCccc
Q 010856          162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS  241 (499)
Q Consensus       162 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  241 (499)
                      |.. .| .|.++..|+.|+++.|+|.-.......+++++..|||.+|+++ ..|+.+.-+.+|..||+|+|.|+ ..|..
T Consensus       218 i~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s  293 (565)
T KOG0472|consen  218 IRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS  293 (565)
T ss_pred             ccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence            985 45 8999999999999999998555555679999999999999999 78999999999999999999999 56778


Q ss_pred             ccCCCCCCEEEccCCcCcc
Q 010856          242 LEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       242 ~~~l~~L~~L~l~~N~l~~  260 (499)
                      ++++ .|+.|-+.||++.+
T Consensus       294 Lgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             cccc-eeeehhhcCCchHH
Confidence            9999 99999999999975

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.87  E-value=3.8e-23  Score=191.68  Aligned_cols=141  Identities=20%  Similarity=0.286  Sum_probs=111.4

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ...++|...+.||+|+||+||+|++ +++..||||.+.+..  .+..+....|++|++.++|||||++++++...++. +
T Consensus         7 ~~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i-~   85 (429)
T KOG0595|consen    7 RVVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFI-Y   85 (429)
T ss_pred             cccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeE-E
Confidence            3457888999999999999999996 468999999997763  44567789999999999999999999999886643 3


Q ss_pred             eeeecccCCCccccccccccccccc----cccccccceeecc------CCCcccEEEeeC------CCeEEEEEEEeecc
Q 010856          435 LCLFHHSSASASASLVSSLTLSRPA----KGGGFRGCVLWHV------GVDFAAFVFVLE------PGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~~~~~~~~----~~~i~~gl~yLH~------~~~p~~~l~~~~------~~~~~~~f~~~~~~  498 (499)
                      ++|++|-+|++...++..+...+..    ..|+|.||++||+      |+||+|+|+...      ...||+||||+|.|
T Consensus        86 lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L  165 (429)
T KOG0595|consen   86 LVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL  165 (429)
T ss_pred             EEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence            3344444677777776654443333    4789999988754      999999999765      45799999999987


Q ss_pred             C
Q 010856          499 N  499 (499)
Q Consensus       499 ~  499 (499)
                      +
T Consensus       166 ~  166 (429)
T KOG0595|consen  166 Q  166 (429)
T ss_pred             C
Confidence            4

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=3e-24  Score=216.75  Aligned_cols=246  Identities=29%  Similarity=0.382  Sum_probs=169.1

Q ss_pred             ccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEee
Q 010856           31 HSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDL  110 (499)
Q Consensus        31 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  110 (499)
                      .+|+++++++|+++. +|+.+..+.+|+.|+..+|+++ ..|..+...++|+.|.+..|.+. -+|....+++.|++|+|
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            355555555555552 2355555555555555555553 33444444555555555555555 23334444555555555


Q ss_pred             ecCCCCCcCCccccCCcc-CCeeeccccCCCCCCcc-ccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccc
Q 010856          111 DGNKLSGSLPACFSNLTS-LRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSG  188 (499)
Q Consensus       111 ~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (499)
                      ..|++...++..|..... |+.|+.+.|.+...|.. -..++.|+.|++.+|.+++.....+.+..+|+.|+|++|++..
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            555555333323332222 44555555555544421 1235678889999999998777788889999999999999997


Q ss_pred             cCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcc-cCCCCCC
Q 010856          189 VIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEG-EIPRGGS  267 (499)
Q Consensus       189 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~  267 (499)
                      .....+.+++.|++|+||+|+++ .+|+.+..++.|++|...+|+|. ..| .+..++.|+.+|++.|.++. .+|....
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            77788899999999999999999 66789999999999999999998 556 78899999999999999985 3455555


Q ss_pred             CCCccccccCCCcCC
Q 010856          268 FGNFSAESFEGNELL  282 (499)
Q Consensus       268 ~~~l~~~~l~~N~~~  282 (499)
                      +++++.++++||+|.
T Consensus       475 ~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNTRL  489 (1081)
T ss_pred             CcccceeeccCCccc
Confidence            689999999999974

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.87  E-value=2.6e-23  Score=185.17  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=110.3

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +.|+...++|+|+||+||+|+.+ +|+.||||++.....  .-.+-.+|||+++++++|+|+|.++++|..  -.....+
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrr--krklhLV   79 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRR--KRKLHLV   79 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHh--cceeEEE
Confidence            45777889999999999999964 699999999965542  234567899999999999999999999877  3355667


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +||+....+..+..     +....+.+..|+++|+.|+|+      |+||+||+++..|.+|+|||||+|.|
T Consensus        80 FE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L  151 (396)
T KOG0593|consen   80 FEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTL  151 (396)
T ss_pred             eeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhh
Confidence            88887665555432     122345567899999999876      89999999999999999999999976

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=5e-21  Score=199.10  Aligned_cols=176  Identities=27%  Similarity=0.248  Sum_probs=85.1

Q ss_pred             CCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCC
Q 010856           80 KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSS  159 (499)
Q Consensus        80 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~  159 (499)
                      +|+.|++++|+++. +|.   .+++|+.|++++|++++. |..   ..+|+.|++++|+++.+|..   .++|+.|+|++
T Consensus       283 ~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~  351 (788)
T PRK15387        283 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSD  351 (788)
T ss_pred             hcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccccccc---ccccceEecCC
Confidence            34445555555542 222   124566666666666532 221   12344455555555544421   13566666666


Q ss_pred             CcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCc
Q 010856          160 NFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP  239 (499)
Q Consensus       160 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  239 (499)
                      |+|+++ |..   ..+|+.|++++|+++. +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|
T Consensus       352 N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP  418 (788)
T PRK15387        352 NQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LP  418 (788)
T ss_pred             CccCCC-CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CC
Confidence            666642 221   2345555555555553 2221   2356666666666653 2221   2356666666666653 23


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCC
Q 010856          240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL  282 (499)
Q Consensus       240 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~  282 (499)
                      ..   ..+|+.|++++|+|+..+.....++.+..+++.+|++.
T Consensus       419 ~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        419 ML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence            22   23455566666666532222234555556666666643

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=6e-22  Score=188.10  Aligned_cols=138  Identities=20%  Similarity=0.179  Sum_probs=114.9

Q ss_pred             hhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +.|+..++||+|.||.||+|+ ..+|+.||+|++....  ........|||.||++++|||||+|.+.+.+......+++
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            457777899999999999999 4689999999997665  3445667899999999999999999999887655677889


Q ss_pred             ecccCCCcccccc-----ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSSASASASLV-----SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~~~~~l~-----~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +|||..++...+.     ......+.+..|++.||+|||.      |+|..|+|+++++..|++|||++++.
T Consensus       197 FeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y  268 (560)
T KOG0600|consen  197 FEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFY  268 (560)
T ss_pred             EecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeec
Confidence            9999887644433     3344455556899999998866      89999999999999999999999864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=2.6e-21  Score=202.44  Aligned_cols=247  Identities=25%  Similarity=0.365  Sum_probs=177.3

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      .+.+.|+++++.++.+ |. .   ++++|+.|+|++|+++. +|..+.  ++|++|++++|+++. +|..+.  .+|+.|
T Consensus       178 ~~~~~L~L~~~~LtsL-P~-~---Ip~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLTTI-PA-C---IPEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcCcC-Cc-c---cccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEE
Confidence            3567899999888854 33 2   34589999999999985 444443  589999999999884 454443  478999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS  164 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~  164 (499)
                      +|++|.+. .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|+++.+|..+.  ++|+.|++++|.++.
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc
Confidence            99999988 4555553  578999999999884 455443  589999999999988876543  578888999998886


Q ss_pred             CCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccC
Q 010856          165 PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEK  244 (499)
Q Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  244 (499)
                      + |..+  .++|+.|++++|.++. +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++.. |..+. 
T Consensus       319 L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L-P~~l~-  387 (754)
T PRK15370        319 L-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-PENLP-  387 (754)
T ss_pred             C-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC-CHhHH-
Confidence            3 3332  2678888899998885 454443  68899999999887 4555443  5888999999988854 44332 


Q ss_pred             CCCCCEEEccCCcCcccCCCC-----CCCCCccccccCCCcCCC
Q 010856          245 LSYLENLNLSFNKLEGEIPRG-----GSFGNFSAESFEGNELLC  283 (499)
Q Consensus       245 l~~L~~L~l~~N~l~~~~~~~-----~~~~~l~~~~l~~N~~~c  283 (499)
                       ..|+.|++++|++++ +|..     ...+.+..+++.+||+..
T Consensus       388 -~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 -AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             -HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccH
Confidence             368888889998874 3332     123556678888888643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=6.4e-21  Score=198.30  Aligned_cols=224  Identities=27%  Similarity=0.324  Sum_probs=162.4

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCcccc-----------------CCCCCCEEeccCCcCC
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEIS-----------------NLTNSTIVNLGGNKLN   68 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~-----------------~l~~L~~L~L~~n~l~   68 (499)
                      +|+.|++++|+++.+ |.     ++++|++|++++|+++.+ |....                 ..++|+.|++++|+++
T Consensus       223 ~L~~L~L~~N~Lt~L-P~-----lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt  295 (788)
T PRK15387        223 HITTLVIPDNNLTSL-PA-----LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT  295 (788)
T ss_pred             CCCEEEccCCcCCCC-CC-----CCCCCcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccc
Confidence            466666666666643 21     123666666666666633 22111                 1134555666666665


Q ss_pred             ccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccC
Q 010856           69 GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWN  148 (499)
Q Consensus        69 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  148 (499)
                      .+ |.   .+++|+.|+|++|++++. |..   ..+|+.|++++|++++ +|. +  ..+|+.|+|++|+|+.+|..   
T Consensus       296 ~L-P~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls~LP~l---  360 (788)
T PRK15387        296 SL-PV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPT-L--PSGLQELSVSDNQLASLPTL---  360 (788)
T ss_pred             cc-cc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-ccc-c--ccccceEecCCCccCCCCCC---
Confidence            32 32   247899999999999854 432   3468899999999985 343 2  25899999999999998864   


Q ss_pred             CCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEe
Q 010856          149 LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN  228 (499)
Q Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  228 (499)
                      .++|+.|++++|.++. +|..   ..+|+.|++++|++++. |..   .++|+.|++++|++++ +|..   ..+|+.|+
T Consensus       361 p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~  428 (788)
T PRK15387        361 PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLS  428 (788)
T ss_pred             Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhh
Confidence            3678899999999986 4432   35799999999999854 432   3689999999999995 4543   34688999


Q ss_pred             CCCCcCCccCcccccCCCCCCEEEccCCcCcccCCC
Q 010856          229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPR  264 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  264 (499)
                      +++|+|+ .+|..+..+++|+.|++++|+|++..+.
T Consensus       429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            9999999 5788899999999999999999986554

>PLN03210 Resistant to P

Probab=99.85  E-value=5.4e-20  Score=205.33  Aligned_cols=261  Identities=25%  Similarity=0.288  Sum_probs=117.6

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      +|+.|++.++.+...+..  +.  +.+|++|++.+|.+. .++..+..+++|+.|+|+++......| .+..+++|+.|+
T Consensus       590 ~Lr~L~~~~~~l~~lP~~--f~--~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~  663 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSN--FR--PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK  663 (1153)
T ss_pred             ccEEEEecCCCCCCCCCc--CC--ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence            355666665555533221  21  225555555555555 334445555555555555543222333 244555555555


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCcc---------------------CCeeeccccCCCCCCc
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTS---------------------LRIVSLGSNKLTSVPL  144 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---------------------L~~L~L~~n~l~~~~~  144 (499)
                      |++|.....+|..+..+++|+.|++++|.....+|..+ ++++                     |+.|++++|.+..+|.
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence            55554333445555555555555555543222333322 3344                     4444455554444443


Q ss_pred             cccCC-------------------------------CCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCccc
Q 010856          145 TFWNL-------------------------------KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTE  193 (499)
Q Consensus       145 ~~~~l-------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (499)
                      .+ .+                               ++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..
T Consensus       743 ~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        743 NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence            21 11                               23344444444333334444444444444444444322223332


Q ss_pred             ccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccC-CcCcccCCCCCCCCCcc
Q 010856          194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSF-NKLEGEIPRGGSFGNFS  272 (499)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~l~  272 (499)
                      + .+++|+.|++++|......|..   .++|+.|+|++|.++ ..|..+..+++|+.|++++ |++++..+....++.+.
T Consensus       822 ~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~  896 (1153)
T PLN03210        822 I-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE  896 (1153)
T ss_pred             C-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence            2 3444444444444322222221   234555555555555 3445555556666666655 33443333233344444


Q ss_pred             ccccCCC
Q 010856          273 AESFEGN  279 (499)
Q Consensus       273 ~~~l~~N  279 (499)
                      .+++.++
T Consensus       897 ~L~l~~C  903 (1153)
T PLN03210        897 TVDFSDC  903 (1153)
T ss_pred             eeecCCC
Confidence            4454443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.84  E-value=1.1e-19  Score=203.00  Aligned_cols=269  Identities=21%  Similarity=0.260  Sum_probs=181.4

Q ss_pred             CCCCCCCCEEECcCCCC------CccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCcc
Q 010856            1 MSNCKSLTLIYLSNNPL------DGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPIT   74 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l------~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   74 (499)
                      |.+|++|+.|.+..+..      ....|. .+..+|.+|+.|++.++.++ ..|..| ...+|++|++++|.+. ..+..
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            45789999999976643      223444 56667778999999999987 556666 5689999999999998 56777


Q ss_pred             ccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecccc-CCCCCCccccCCCCCc
Q 010856           75 LSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSN-KLTSVPLTFWNLKDIL  153 (499)
Q Consensus        75 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~  153 (499)
                      +..+++|+.|+|++|.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++| .++.+|..+ ++++|+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            8899999999999876544555 4888999999999998877788899999999999999997 566688655 678888


Q ss_pred             EEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccc------------------------------cCCcCCcee
Q 010856          154 NLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI------------------------------GGLKNLEYL  203 (499)
Q Consensus       154 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------------------------~~l~~L~~L  203 (499)
                      .|++++|......|..   ..+|+.|++++|.+... |..+                              ...++|+.|
T Consensus       708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EEeCCCCCCccccccc---cCCcCeeecCCCccccc-cccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence            8888887543333321   24555566666555422 2111                              112356666


Q ss_pred             eCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCC---------------------CCEEEccCCcCcccC
Q 010856          204 FLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSY---------------------LENLNLSFNKLEGEI  262 (499)
Q Consensus       204 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~---------------------L~~L~l~~N~l~~~~  262 (499)
                      ++++|.....+|..++.+++|+.|++++|...+.+|... .+++                     |+.|++++|.++..+
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP  862 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP  862 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccCh
Confidence            666665555566666666666666666654322333332 3444                     455555555555332


Q ss_pred             CCCCCCCCccccccCCCc
Q 010856          263 PRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       263 ~~~~~~~~l~~~~l~~N~  280 (499)
                      .....++++..+++.+++
T Consensus       863 ~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        863 WWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             HHHhcCCCCCEEECCCCC
Confidence            223345566666666543

syringae 6; Provisional

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.83  E-value=2.4e-21  Score=178.21  Aligned_cols=136  Identities=14%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +.+..+.||+|..|+||++++ ++++.+|+|.+.... ....+++.+|++|+.+.+||+||++||+|..... +..+++|
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~-~isI~mE  158 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGE-EISICME  158 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCc-eEEeehh
Confidence            344558899999999999996 579999999995543 3446889999999999999999999999987433 4667899


Q ss_pred             ccCCCccccccc-----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ||+|+.++.+..     .+.....++.++++||.|||+       |+||.|+|++..+.||+||||.+..|
T Consensus       159 YMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~l  229 (364)
T KOG0581|consen  159 YMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGIL  229 (364)
T ss_pred             hcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHh
Confidence            998887776543     334455567899999999984       89999999999999999999988643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.83  E-value=3.6e-22  Score=193.93  Aligned_cols=272  Identities=22%  Similarity=0.216  Sum_probs=201.8

Q ss_pred             EEECcCCCCCccCChhccccccccccEEEcccCCCccc----CCccccCCCCCCEEeccCCcCCc------cCCccccCC
Q 010856            9 LIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGG----IPEEISNLTNSTIVNLGGNKLNG------SIPITLSKL   78 (499)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l   78 (499)
                      .|+|..+.+++..-...+..+. +|+.|++++|.++..    ++..+...++|++|+++++.+..      ..+..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            5788888888544443666677 799999999998542    45556778889999999998862      223456778


Q ss_pred             CCCCeEecccccccccCCccccCccc---ccEEeeecCCCCC----cCCccccCC-ccCCeeeccccCCCC-----CCcc
Q 010856           79 QKLQGLGLEDNKLEGSIPDDICHLAE---LYRLDLDGNKLSG----SLPACFSNL-TSLRIVSLGSNKLTS-----VPLT  145 (499)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~-----~~~~  145 (499)
                      ++|+.|++++|.+....+..+..+.+   |++|++++|++++    .....+..+ ++|+.|++++|.++.     ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            89999999999997666666655555   9999999999873    222345566 899999999999983     4445


Q ss_pred             ccCCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCcccccC----cccccCCcCCceeeCcCCcCCCCCCcc
Q 010856          146 FWNLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLQGSIPDS  217 (499)
Q Consensus       146 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~  217 (499)
                      +..+++|++|++++|.+++.    .+..+..+++|+.|++++|.+++..    ...+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            67788999999999998852    2234556679999999999987543    344567889999999999988633333


Q ss_pred             cc-----CCCCCCEEeCCCCcCCc----cCcccccCCCCCCEEEccCCcCcccC----CC-CCCC-CCccccccCCCcC
Q 010856          218 FG-----DLISLKFLNLSNNNLSG----AIPASLEKLSYLENLNLSFNKLEGEI----PR-GGSF-GNFSAESFEGNEL  281 (499)
Q Consensus       218 l~-----~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~----~~-~~~~-~~l~~~~l~~N~~  281 (499)
                      +.     ..+.|+.|++++|.+++    .....+..+++|+.+++++|.++...    .. ...+ +.+..+++.+|||
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            22     24799999999999973    23345666789999999999998541    11 1223 5677788888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=2.1e-22  Score=203.54  Aligned_cols=246  Identities=28%  Similarity=0.314  Sum_probs=205.6

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      .+|+++++++|+++... . .+..++ +|+.++..+|+++ ..|..+....+|+.|++.+|.+. -.|.....++.|+.|
T Consensus       241 ~nl~~~dis~n~l~~lp-~-wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-E-WIGACA-NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             ccceeeecchhhhhcch-H-HHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            47899999999999664 5 788888 9999999999996 67888888999999999999998 455667889999999


Q ss_pred             ecccccccccCCccccCccc-ccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC-CCccccCCCCCcEEEcCCCcC
Q 010856           85 GLEDNKLEGSIPDDICHLAE-LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      +|..|++....+..+..+.. |..|+.+.|.+.......=..++.|+.|.+.+|.+++ .-+.+.+.+.|+.|+|++|++
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            99999998554444555544 8888889999886554344456789999999999998 333677889999999999999


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      .......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++......-
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            9877888899999999999999998 56788899999999999999998 566 88999999999999999985544444


Q ss_pred             cCCCCCCEEEccCCcC
Q 010856          243 EKLSYLENLNLSFNKL  258 (499)
Q Consensus       243 ~~l~~L~~L~l~~N~l  258 (499)
                      ...++|++||+++|.-
T Consensus       473 ~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCCcccceeeccCCcc
Confidence            4448999999999984

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2.5e-20  Score=195.04  Aligned_cols=226  Identities=23%  Similarity=0.366  Sum_probs=179.1

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|+.|+|++|+++..... .    +.+|++|++++|+++. +|..+.  ++|+.|+|++|+++ .+|..+.  .+|+.|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~-l----~~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L  267 (754)
T PRK15370        199 EQITTLILDNNELKSLPEN-L----QGNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL  267 (754)
T ss_pred             cCCcEEEecCCCCCcCChh-h----ccCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence            4689999999999965432 2    2389999999999985 465553  57999999999998 4555553  589999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS  164 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~  164 (499)
                      ++++|+++ .+|..+.  ++|+.|++++|+++.. |..+.  ++|+.|++++|+++.+|..+.  ++|+.|++++|.++.
T Consensus       268 ~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        268 DLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS  339 (754)
T ss_pred             ECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc
Confidence            99999998 4566553  5899999999999954 44443  579999999999999886553  789999999999986


Q ss_pred             CCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcc----
Q 010856          165 PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA----  240 (499)
Q Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~----  240 (499)
                       +|..+.  ++|+.|++++|+++. +|..+  .++|+.|++++|.++. +|..+.  ++|+.|++++|+++. +|.    
T Consensus       340 -LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~  409 (754)
T PRK15370        340 -LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPH  409 (754)
T ss_pred             -CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHH
Confidence             454443  789999999999984 55544  3689999999999995 455544  379999999999984 444    


Q ss_pred             cccCCCCCCEEEccCCcCc
Q 010856          241 SLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       241 ~~~~l~~L~~L~l~~N~l~  259 (499)
                      .+..++.+..|++.+|+++
T Consensus       410 ~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        410 FRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HhhcCCCccEEEeeCCCcc
Confidence            3445688999999999997

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.82  E-value=6e-21  Score=167.29  Aligned_cols=135  Identities=16%  Similarity=0.256  Sum_probs=110.1

Q ss_pred             hhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCc--cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGR--AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~--~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..|...+++|+|.||.||+|+ ..+|+.||||+++.....  -.....|||+.++.++|+||+.++++|-..+  -.-.+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~--~l~lV   79 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKS--NLSLV   79 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCC--ceEEE
Confidence            357778999999999999999 468999999999876532  2456789999999999999999999987644  33457


Q ss_pred             ecccCCCccccccccccc-----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVSSLTL-----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~-----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|+|..++...++.....     .+.++.++.+|++|||+      |+||.|.|+..++.+|++|||+++.
T Consensus        80 fEfm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~  150 (318)
T KOG0659|consen   80 FEFMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARF  150 (318)
T ss_pred             EEeccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhc
Confidence            899998876655543322     23335788999999876      8999999999999999999999986

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=8.8e-21  Score=175.90  Aligned_cols=137  Identities=16%  Similarity=0.178  Sum_probs=108.1

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-c------cHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-R------AFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~------~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      .+.|.+.+.+|+|+||.|.+|.. ++|+.||||++.++.. .      ....+.+|++||++++|||||+++++|...++
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            35578889999999999999994 6899999999987641 1      12335799999999999999999999988765


Q ss_pred             ceeeeeeccc-CCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeC---CCeEEEEEEEeec
Q 010856          432 TVCLCLFHHS-SASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLE---PGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~-~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~---~~~~~~~f~~~~~  497 (499)
                      .  ++++||+ +|++++.+......    .+.++.|++.|+.|||+      |+||+|||+.++   --+||.|||++.+
T Consensus       251 ~--YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  251 S--YMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             e--EEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            4  4456666 66666665544333    33445899999999987      899999999765   4899999999876


Q ss_pred             c
Q 010856          498 L  498 (499)
Q Consensus       498 ~  498 (499)
                      .
T Consensus       329 ~  329 (475)
T KOG0615|consen  329 S  329 (475)
T ss_pred             c
Confidence            4

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.81  E-value=5.6e-21  Score=183.41  Aligned_cols=136  Identities=15%  Similarity=0.245  Sum_probs=115.6

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|...+.||+|+||.||+|+.+ +.+.||+|.+++..  .+..+.+.+|++|+++++|||||.++++|..  ..+.+++
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt--~~~~~vV   79 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFET--SAHLWVV   79 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcc--cceEEEE
Confidence            46778889999999999999964 68999999997754  3446778999999999999999999999987  4566778


Q ss_pred             ecccCCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSSASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .||..|+++..+..++..    .+.++.+++.||.|||+      +.||.|||+...+++|+|||||+++.
T Consensus        80 te~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m  150 (808)
T KOG0597|consen   80 TEYAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAM  150 (808)
T ss_pred             ehhhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhc
Confidence            888888887777766554    44556888999999987      89999999999999999999999863

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.80  E-value=3e-20  Score=179.14  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=104.9

Q ss_pred             ccccccccCCcceEEEEEeCCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          364 SENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      ...+.+|+|+||+||+|.++....||||++.....  ...++|.+|+.+|.+++|||||+++|+|..... ...+++||+
T Consensus        44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~-~~~iVtEy~  122 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPG-SLCIVTEYM  122 (362)
T ss_pred             hhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC-ceEEEEEeC
Confidence            34456999999999999995444499999976542  225689999999999999999999999987543 456678888


Q ss_pred             CCCcccccccc---c----cccccccccccccceeecc-------CCCcccEEEeeCC-CeEEEEEEEeecc
Q 010856          442 SASASASLVSS---L----TLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEP-GVEVICFVFEILL  498 (499)
Q Consensus       442 ~~~~~~~l~~~---~----~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~-~~~~~~f~~~~~~  498 (499)
                      .++.+..+...   .    ..+.++|.+||+||.|||+       |.||.|+|++.++ .+||+|||+++..
T Consensus       123 ~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~  194 (362)
T KOG0192|consen  123 PGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREK  194 (362)
T ss_pred             CCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceee
Confidence            66655543322   1    1233457999999999988       5689999999997 9999999999864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=2.5e-21  Score=188.07  Aligned_cols=255  Identities=20%  Similarity=0.226  Sum_probs=191.9

Q ss_pred             CCCCCCEEECcCCCCCccCCh---hccccccccccEEEcccCCCcc------cCCccccCCCCCCEEeccCCcCCccCCc
Q 010856            3 NCKSLTLIYLSNNPLDGILPK---TSVGNLSHSLEDFRMYNCNISG------GIPEEISNLTNSTIVNLGGNKLNGSIPI   73 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~   73 (499)
                      .+++|++|+++++.++.....   ..+...+ ++++|+++++.+.+      ..+..+..+++|+.|++++|.+....+.
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            356799999999998653211   1344444 79999999998872      3345677899999999999999865555


Q ss_pred             cccCCCC---CCeEecccccccc----cCCccccCc-ccccEEeeecCCCCCc----CCccccCCccCCeeeccccCCCC
Q 010856           74 TLSKLQK---LQGLGLEDNKLEG----SIPDDICHL-AELYRLDLDGNKLSGS----LPACFSNLTSLRIVSLGSNKLTS  141 (499)
Q Consensus        74 ~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  141 (499)
                      .+..+.+   |++|++++|+++.    .+...+..+ ++|+.|++++|.+++.    .+..+..+++|+.|++++|.++.
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            5555554   9999999999873    223345566 8999999999999842    23456677899999999999984


Q ss_pred             -----CCccccCCCCCcEEEcCCCcCCCCC----cccccCCCCccEEEccCCcccccCccccc-----CCcCCceeeCcC
Q 010856          142 -----VPLTFWNLKDILNLNFSSNFLTSPL----PLEIGNLKVLIGIDFSMNNFSGVIPTEIG-----GLKNLEYLFLGY  207 (499)
Q Consensus       142 -----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~  207 (499)
                           ++..+..+++|++|++++|.+++..    ...+..+++|+.|++++|.+++.....+.     ..+.|++|++++
T Consensus       180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~  259 (319)
T cd00116         180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC  259 (319)
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence                 3445566789999999999987532    34466789999999999999864333332     247999999999


Q ss_pred             CcCCC----CCCccccCCCCCCEEeCCCCcCCcc----CcccccCC-CCCCEEEccCCcC
Q 010856          208 NRLQG----SIPDSFGDLISLKFLNLSNNNLSGA----IPASLEKL-SYLENLNLSFNKL  258 (499)
Q Consensus       208 n~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l  258 (499)
                      |.+++    .....+..+++|+.+++++|.++..    ....+... +.|+.+++.+|++
T Consensus       260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            99973    2234566778999999999999855    33444445 7899999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.79  E-value=2.6e-20  Score=168.32  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=112.8

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc--cHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR--AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~--~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ...++|+..+.|++|+||.||+|+. ++++.||+|+++.....  -.-...|||.++.+++|||||.+.+++...+....
T Consensus        73 rsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i  152 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI  152 (419)
T ss_pred             ccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence            4567788999999999999999995 57999999999876522  23346899999999999999999999877655567


Q ss_pred             eeeecccCCCccccccccc-----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVSSL-----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~~-----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++|+..++...+..-.     ...+.+..|+.+|++|||.      |.||.|.|+.+.|..+++|||++|-
T Consensus       153 y~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~  226 (419)
T KOG0663|consen  153 YIVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLARE  226 (419)
T ss_pred             eeeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhh
Confidence            7889999888655443221     1223334899999998765      8999999999999999999999974

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.79  E-value=1.2e-19  Score=171.24  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=114.2

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--------------ccHHHHHHHHHHHhcCCCCCccc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--------------RAFESFDVECEMMKNIRHRNLIK  421 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--------------~~~~~~~~E~~il~~l~H~niv~  421 (499)
                      ....+.|++.+.||+|.||+|.+|+. .+++.||||++.+...              ...+++.+||.||++++|||||+
T Consensus        93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~  172 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVK  172 (576)
T ss_pred             ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeE
Confidence            35567899999999999999999994 5799999999965320              01367899999999999999999


Q ss_pred             cceeEEccccceeeeeecccCCCcccccccccc-----ccccccccccccceeecc------CCCcccEEEeeCCCeEEE
Q 010856          422 ILHGVAVITFTVCLCLFHHSSASASASLVSSLT-----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       422 l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~  490 (499)
                      |+++.-+.+....++++||+.++.......+..     ..+.+.++++.||+|||.      ++||.|.|+..++.|||.
T Consensus       173 LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIs  252 (576)
T KOG0585|consen  173 LIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKIS  252 (576)
T ss_pred             EEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEee
Confidence            999988877777778888887765554443333     345556888999999976      899999999999999999


Q ss_pred             EEEEee
Q 010856          491 CFVFEI  496 (499)
Q Consensus       491 ~f~~~~  496 (499)
                      |||-+.
T Consensus       253 DFGVs~  258 (576)
T KOG0585|consen  253 DFGVSN  258 (576)
T ss_pred             ccceee
Confidence            999765

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.1e-19  Score=177.05  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=110.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..|...+.||+|+|+.||.++. .+|+.||+|++.+..   ...++++.+||+|.++++|||||+++++|.+.++.  ++
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nV--Yi   95 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNV--YI   95 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCce--EE
Confidence            4599999999999999999996 789999999998753   45678899999999999999999999999885544  33


Q ss_pred             eeccc-CCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeeccC
Q 010856          437 LFHHS-SASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILLN  499 (499)
Q Consensus       437 l~~~~-~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~~  499 (499)
                      +.|++ .+.+...+...    ++.++.+.+||+.||.|||+      |+|-.|++++++-.|||.|||++-.++
T Consensus        96 vLELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le  169 (592)
T KOG0575|consen   96 VLELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLE  169 (592)
T ss_pred             EEEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeec
Confidence            45555 44443333322    33344455899999999987      788999999999999999999997764

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.5e-20  Score=162.36  Aligned_cols=140  Identities=18%  Similarity=0.191  Sum_probs=113.2

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .+.++|++.+.+|+|.||.||.|+. +++-.||+|++.+..   .+..+++.+|++|.+.++||||+++|+++.+.. ..
T Consensus        19 ~~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~-ri   97 (281)
T KOG0580|consen   19 WTLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK-RI   97 (281)
T ss_pred             cchhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccc-ee
Confidence            5567889999999999999999996 578899999997654   344578999999999999999999999998743 33


Q ss_pred             eeeeecccCCCcccccc------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSASASASLV------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +..+++...|+++..++      ..+........|+|.|+.|+|.      ++||+|.|...++..+++|||-+++-
T Consensus        98 yLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~  174 (281)
T KOG0580|consen   98 YLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHA  174 (281)
T ss_pred             EEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeec
Confidence            44455556777776665      2233344445899999999865      89999999999999999999999874

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.78  E-value=9.1e-20  Score=175.57  Aligned_cols=138  Identities=19%  Similarity=0.152  Sum_probs=110.7

Q ss_pred             HHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ....+.+.+.+.||+|.||+||.|.+.....||+|.++... -..++|.+|+++|++++|+|||+++|+|...+  +..+
T Consensus       202 ei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~--piyI  278 (468)
T KOG0197|consen  202 EIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQE--PIYI  278 (468)
T ss_pred             eecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCC--ceEE
Confidence            33444566779999999999999999777799999998753 33578999999999999999999999998744  5566


Q ss_pred             eeccc-CCCccccccccccc------cccccccccccceee------ccCCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHS-SASASASLVSSLTL------SRPAKGGGFRGCVLW------HVGVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~-~~~~~~~l~~~~~~------~~~~~~~i~~gl~yL------H~~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++||| .|.+.+.++.....      ...++.|||+||+||      |+|.-..||||+++..|||+|||++++
T Consensus       279 VtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~  352 (468)
T KOG0197|consen  279 VTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARL  352 (468)
T ss_pred             EEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccc
Confidence            78887 55566666652221      223368999999966      778999999999999999999999985

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.78  E-value=8.1e-20  Score=162.63  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=112.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..+|+..+.+|.|+||.|.+++. .+|..||+|++++..   -++.+...+|.++++.+.||+++++++.+.+.  ...+
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~--~~ly  120 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDN--SNLY  120 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccC--CeEE
Confidence            45677889999999999999996 468999999998775   34567789999999999999999999888763  3455


Q ss_pred             eeeccc-CCCccccccccccccccc----cccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHS-SASASASLVSSLTLSRPA----KGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~-~~~~~~~l~~~~~~~~~~----~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|. +|+++..++...+..++.    |.||+.|++|||+      +.||+|+|+++.|-.+++||||+.-
T Consensus       121 mvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~  193 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKR  193 (355)
T ss_pred             EEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEE
Confidence            567766 555666666555554444    6899999999998      8999999999999999999999864

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.7e-20  Score=177.02  Aligned_cols=137  Identities=17%  Similarity=0.162  Sum_probs=112.4

Q ss_pred             HhhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHH--HHHHHHHHhcCC-CCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFES--FDVECEMMKNIR-HRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~--~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~  434 (499)
                      ...+|...+.+|.|+||.||+|+ ..+|..||||++++.-.. .++  -.||++-++++. |||||++.+++.+.+. ..
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~ee~~nLREvksL~kln~hpniikL~Evi~d~~~-~L   85 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDR-IL   85 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-HHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCc-eE
Confidence            34678999999999999999999 467899999999765432 233  368999999998 9999999999988654 56


Q ss_pred             eeeecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.++|||...+++.+...     +...+.+..||++||+|+|.      |+||+|+|+...+-+|++|||++|-
T Consensus        86 ~fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARe  159 (538)
T KOG0661|consen   86 YFVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLARE  159 (538)
T ss_pred             eeeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccc
Confidence            678999998876655433     22345556999999998865      8999999999999999999999984

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=4e-21  Score=157.52  Aligned_cols=177  Identities=28%  Similarity=0.469  Sum_probs=116.4

Q ss_pred             CcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEE
Q 010856          101 HLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID  180 (499)
Q Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  180 (499)
                      .+..++.|.|++|+++ ..|..++.+.+|+.|++++|+|+++|..+..+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            4445555556666655 3344455556666666666666666666666666666666666654 4556666666666666


Q ss_pred             ccCCcccc-cCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          181 FSMNNFSG-VIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       181 l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      |++|++.. ..|..|-.+..|+.|+|++|.+. ..|...+++++|+.|.+.+|.+- ..|..++.+..|++|.+.+|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            66666543 45667777788888888888887 77778888888888888888887 56778888888888888888888


Q ss_pred             ccCCCCCCC---CCccccccCCCcC
Q 010856          260 GEIPRGGSF---GNFSAESFEGNEL  281 (499)
Q Consensus       260 ~~~~~~~~~---~~l~~~~l~~N~~  281 (499)
                      -..|+...+   .+-....+..|||
T Consensus       187 vlppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  187 VLPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             ecChhhhhhhhhhhHHHHhhhhCCC
Confidence            655553221   1222344455654

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.77  E-value=9.8e-20  Score=167.56  Aligned_cols=137  Identities=15%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ...++|++.++||+|+||+|+.++. .+++.||+|++++..   ....+...+|..|+.+++||+||++...|.+.+  .
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~--k   99 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEE--K   99 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCC--e
Confidence            3457899999999999999999995 469999999998765   334677899999999999999999997777744  4


Q ss_pred             eeeeeccc-CCCcccccccccccccc----ccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          434 CLCLFHHS-SASASASLVSSLTLSRP----AKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       434 ~~~l~~~~-~~~~~~~l~~~~~~~~~----~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .+.+.+|+ +|+++..+.......+.    .+..|+.||.|||+      |+||+|||++..|-++++|||++.
T Consensus       100 LylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k  173 (357)
T KOG0598|consen  100 LYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCK  173 (357)
T ss_pred             EEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence            45566666 55666655544444433    35789999999998      899999999999999999999975

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.2e-19  Score=183.36  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=110.1

Q ss_pred             HhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      ...+....+.+|+|+||+||+|+.      .+.+.||||.++..... ..++|.||+++++.++|||||+|+|+|...+ 
T Consensus       484 ~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~-  562 (774)
T KOG1026|consen  484 PRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGD-  562 (774)
T ss_pred             chhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCC-
Confidence            344556678899999999999984      23578999999887654 6789999999999999999999999998844 


Q ss_pred             ceeeeeeccc-CCCccccccccccc------------------cccccccccccceee------ccCCCcccEEEeeCCC
Q 010856          432 TVCLCLFHHS-SASASASLVSSLTL------------------SRPAKGGGFRGCVLW------HVGVDFAAFVFVLEPG  486 (499)
Q Consensus       432 ~~~~~l~~~~-~~~~~~~l~~~~~~------------------~~~~~~~i~~gl~yL------H~~~~p~~~l~~~~~~  486 (499)
                       +..+++||| .|++.++++...+.                  ...+|.|||.||+||      |+|.-.-|.|+...-.
T Consensus       563 -P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~  641 (774)
T KOG1026|consen  563 -PLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLV  641 (774)
T ss_pred             -eeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceE
Confidence             666788888 67877776532211                  123368999999987      7788889999999999


Q ss_pred             eEEEEEEEee
Q 010856          487 VEVICFVFEI  496 (499)
Q Consensus       487 ~~~~~f~~~~  496 (499)
                      |||.|||++|
T Consensus       642 VKIsDfGLsR  651 (774)
T KOG1026|consen  642 VKISDFGLSR  651 (774)
T ss_pred             EEecccccch
Confidence            9999999986

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.77  E-value=3.5e-19  Score=171.77  Aligned_cols=136  Identities=16%  Similarity=0.152  Sum_probs=108.7

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ....+.++||+|.||+|..|+...+..||||.++.... ..+.+|.+|+++|.+++|||||+++|+|...|  +.-++.|
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~De--PicmI~E  615 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDD--PLCMITE  615 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCC--chHHHHH
Confidence            34556789999999999999987789999999987763 34688999999999999999999999998744  3334556


Q ss_pred             cc-CCCcccccccccc------ccccccccccccceee------ccCCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HS-SASASASLVSSLT------LSRPAKGGGFRGCVLW------HVGVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~-~~~~~~~l~~~~~------~~~~~~~~i~~gl~yL------H~~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      || .|++..++...+.      ..-+++.|||.||+||      |++.-|-|.|++.+..+||+|||.+|-|
T Consensus       616 YmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~l  687 (807)
T KOG1094|consen  616 YMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNL  687 (807)
T ss_pred             HHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCccccccc
Confidence            65 5666555543321      1223568999999987      7799999999999999999999999843

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.76  E-value=2.6e-19  Score=178.05  Aligned_cols=148  Identities=20%  Similarity=0.202  Sum_probs=115.2

Q ss_pred             cccCHHHHHHHhhh---------cccccccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcC
Q 010856          349 RTFSYLELFRATDE---------FSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNI  414 (499)
Q Consensus       349 ~~~~~~~~~~~~~~---------~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l  414 (499)
                      .++++++--.+...         ..+.++||.|.||+|++|+++    ....||||.++... .+++.+|..|+.||.++
T Consensus       608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF  687 (996)
T KOG0196|consen  608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF  687 (996)
T ss_pred             CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC
Confidence            45555554444333         345789999999999999963    24679999999876 45678899999999999


Q ss_pred             CCCCccccceeEEccccceeeeeecccCCCcccc-ccccccc--ccc---ccccccccceee------ccCCCcccEEEe
Q 010856          415 RHRNLIKILHGVAVITFTVCLCLFHHSSASASAS-LVSSLTL--SRP---AKGGGFRGCVLW------HVGVDFAAFVFV  482 (499)
Q Consensus       415 ~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~--~~~---~~~~i~~gl~yL------H~~~~p~~~l~~  482 (499)
                      +||||++|.|++..  ..+.+++-|||.++.++. ++.....  ..+   +.++||.||.||      |+|.-.-|||++
T Consensus       688 dHPNIIrLEGVVTk--s~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVN  765 (996)
T KOG0196|consen  688 DHPNIIRLEGVVTK--SKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVN  765 (996)
T ss_pred             CCCcEEEEEEEEec--CceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeec
Confidence            99999999999876  668888899997666554 4433222  111   237888887755      889999999999


Q ss_pred             eCCCeEEEEEEEeecc
Q 010856          483 LEPGVEVICFVFEILL  498 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~~  498 (499)
                      .+--+||+|||++|||
T Consensus       766 snLvCKVsDFGLSRvl  781 (996)
T KOG0196|consen  766 SNLVCKVSDFGLSRVL  781 (996)
T ss_pred             cceEEEeccccceeec
Confidence            9999999999999997

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.75  E-value=5.8e-19  Score=166.64  Aligned_cols=134  Identities=24%  Similarity=0.237  Sum_probs=100.7

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhc--CCCCCccccceeEEcc--ccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKN--IRHRNLIKILHGVAVI--TFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~--l~H~niv~l~~~~~~~--~~~~~~~  436 (499)
                      ...++..++|+|+||.||+|++ +++.||||++...   ..+.|.+|-+|.+.  ++|+||++++++-...  +.+++..
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~~---~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywL  285 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPEQ---EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWL  285 (534)
T ss_pred             CchhhHHHhhcCccceeehhhc-cCceeEEEecCHH---HHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeE
Confidence            3455668899999999999998 5589999999753   45678899998764  6999999999764332  1333444


Q ss_pred             ee-cccCCCcccccc---ccccccccccccccccceeecc------CCCc---------ccEEEeeCCCeEEEEEEEeec
Q 010856          437 LF-HHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDF---------AAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~-~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p---------~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +. ++..|.+.+.+.   ..|....+++..+++||+|||+      +.||         .|||+-.|..++|+|||++..
T Consensus       286 Vt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~  365 (534)
T KOG3653|consen  286 VTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALR  365 (534)
T ss_pred             EeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEE
Confidence            44 455666655543   3566677888999999999998      3444         566777788999999999987


Q ss_pred             c
Q 010856          498 L  498 (499)
Q Consensus       498 ~  498 (499)
                      +
T Consensus       366 ~  366 (534)
T KOG3653|consen  366 L  366 (534)
T ss_pred             e
Confidence            5

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.75  E-value=5.1e-19  Score=162.67  Aligned_cols=138  Identities=17%  Similarity=0.191  Sum_probs=110.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCC-ccccceeEEcccc----
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRN-LIKILHGVAVITF----  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~n-iv~l~~~~~~~~~----  431 (499)
                      ...|...+++|+|+||+||+|+. .+|+.||+|++.....  .-.....+|+.++++++|+| ||++++++...+.    
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            45577778899999999999994 6899999999976543  23456789999999999999 9999999877431    


Q ss_pred             ceeeeeecccCCCccccccccc--------cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSASASASLVSSL--------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~~--------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ....++++++..++...+....        ...+.+.+|+++||+|||+      |+||+|+|++..+..|++|||+++-
T Consensus        90 ~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra  169 (323)
T KOG0594|consen   90 GKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARA  169 (323)
T ss_pred             ceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHH
Confidence            2455678888877765544322        1345556999999999977      8999999999999999999999873

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=1.8e-20  Score=153.69  Aligned_cols=154  Identities=31%  Similarity=0.525  Sum_probs=79.1

Q ss_pred             CCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCee
Q 010856           53 NLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIV  132 (499)
Q Consensus        53 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  132 (499)
                      ++.+.+.|.|++|+++ ..|..++.+.+|+.|++++|+|+ ..|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3445555555666555 33334555555555555555555 44455555555555555555555 455555555555555


Q ss_pred             eccccCCCC--CCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcC
Q 010856          133 SLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL  210 (499)
Q Consensus       133 ~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  210 (499)
                      ||.+|++.+  +|..|+.++.|+.|+|++|.+. ..|.+++++++|+.|.+..|.+- ..|..++.+..|++|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            555555554  4555555555555555555544 34444444444444444444443 2344444444444444444444


Q ss_pred             C
Q 010856          211 Q  211 (499)
Q Consensus       211 ~  211 (499)
                      +
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            4

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.75  E-value=3.6e-19  Score=163.51  Aligned_cols=133  Identities=19%  Similarity=0.212  Sum_probs=102.9

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcc-cc--ceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVI-TF--TVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~-~~--~~~~~l  437 (499)
                      .|...+++|.|+||.||+|.. .+++.||||++-.+...    -.+|..+|+.++|||||++..+|... +.  ...-.+
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~----knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY----KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc----CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            477789999999999999995 56889999998654321    23899999999999999999887542 11  223347


Q ss_pred             ecccCCCcccccccccc--------ccccccccccccceeecc------CCCcccEEEeeC-CCeEEEEEEEeecc
Q 010856          438 FHHSSASASASLVSSLT--------LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-PGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~~~~~l~~~~~--------~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-~~~~~~~f~~~~~~  498 (499)
                      +|||+.++.+.++....        ..+-...|+.+||+|||+      |+||.|+|++.+ +..|+||||=+.+|
T Consensus       101 leymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L  176 (364)
T KOG0658|consen  101 LEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVL  176 (364)
T ss_pred             HHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceee
Confidence            89999988777663211        122334899999999876      899999999865 89999999988776

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.74  E-value=2.7e-19  Score=165.43  Aligned_cols=136  Identities=15%  Similarity=0.160  Sum_probs=109.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc---cHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR---AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ...|++.+.+|+|.||+|.+|.. ..|+.||||.+++...+   +.-.+.+||+||+.++||||+.+|++|...+  ..+
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkd--KIv  129 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKD--KIV  129 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCc--eEE
Confidence            34688889999999999999994 68999999999877633   3445789999999999999999999887644  334


Q ss_pred             eeeccc-CCCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHS-SASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~-~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|||. +|++++.+....    ...+++.+||+.|+.|+|.      +.|-+|||++++++++|+|||++-+
T Consensus       130 ivMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNl  202 (668)
T KOG0611|consen  130 IVMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNL  202 (668)
T ss_pred             EEEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhh
Confidence            455554 666766665433    3455566999999999976      7899999999999999999999754

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=1.1e-18  Score=159.96  Aligned_cols=141  Identities=17%  Similarity=0.193  Sum_probs=115.7

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEee--ccCCccHHHHHHHHHHHhcCCCCCccccceeEEc---ccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV---ITF  431 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~--~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~---~~~  431 (499)
                      .....|...+.+|+|+||.|+.+.. ++|+.||+|++.  -......++..||+++++.++|+|||.+++.+..   .++
T Consensus        19 ~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f   98 (359)
T KOG0660|consen   19 EIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF   98 (359)
T ss_pred             eccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence            3344566678899999999999995 579999999996  2334456888999999999999999999998865   345


Q ss_pred             ceeeeeecccCCCccccccccccccccc----cccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          432 TVCLCLFHHSSASASASLVSSLTLSRPA----KGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~----~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ...++++++|+.++...++.........    .+|+.+||.|+|+      |+||.|++++.+...|++|||++|.+
T Consensus        99 ~DvYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~  175 (359)
T KOG0660|consen   99 NDVYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYL  175 (359)
T ss_pred             ceeEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeec
Confidence            5677789999888877766554343333    4899999999988      89999999999999999999999975

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=2.5e-18  Score=167.45  Aligned_cols=139  Identities=17%  Similarity=0.199  Sum_probs=111.3

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC----C-ccHHHHHHHHHHHhcCC-CCCccccceeEEccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC----G-RAFESFDVECEMMKNIR-HRNLIKILHGVAVIT  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~----~-~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~  430 (499)
                      ...+.|...+.||+|+||+|+.|+. .+++.||+|++++..    . ...+.+.+|+.++++++ ||||+++++++....
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            4567899999999999999999985 578999999776642    1 23456779999999999 999999999988754


Q ss_pred             cceeeeeeccc-CCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeC-CCeEEEEEEEeecc
Q 010856          431 FTVCLCLFHHS-SASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-PGVEVICFVFEILL  498 (499)
Q Consensus       431 ~~~~~~l~~~~-~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-~~~~~~~f~~~~~~  498 (499)
                      .  .++++||+ +|++++.+....+.    .+.+.+|++.|++|||+      |+||+|++++.+ +.+|++|||++.+.
T Consensus        94 ~--~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen   94 K--IYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             e--EEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEecccccccc
Confidence            4  44455555 56777776654443    33445899999999987      799999999998 99999999998764

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.73  E-value=3e-18  Score=163.38  Aligned_cols=131  Identities=17%  Similarity=0.263  Sum_probs=106.5

Q ss_pred             ccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          366 NNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      .+++|+|.||+||-|+. ++|+.||||++++..  .++..++.+|++|+.+++||.||.+.--|...|  ..++++|-+.
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~e--rvFVVMEKl~  646 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPE--RVFVVMEKLH  646 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCc--eEEEEehhhc
Confidence            58899999999999995 689999999998765  455678999999999999999999875555544  4456899999


Q ss_pred             CCccccccccc--ccccc----ccccccccceeecc------CCCcccEEEeeC---CCeEEEEEEEeecc
Q 010856          443 ASASASLVSSL--TLSRP----AKGGGFRGCVLWHV------GVDFAAFVFVLE---PGVEVICFVFEILL  498 (499)
Q Consensus       443 ~~~~~~l~~~~--~~~~~----~~~~i~~gl~yLH~------~~~p~~~l~~~~---~~~~~~~f~~~~~~  498 (499)
                      |+.++.+...+  +..++    ++.||..||.|||.      +.||+|+|+.+.   ++||+|||||+|..
T Consensus       647 GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiI  717 (888)
T KOG4236|consen  647 GDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARII  717 (888)
T ss_pred             chHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeec
Confidence            99877765432  22222    35899999999988      899999999764   59999999999863

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.71  E-value=2.1e-18  Score=142.63  Aligned_cols=134  Identities=18%  Similarity=0.205  Sum_probs=105.1

Q ss_pred             hcccccccccCCcceEEEEE-eCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|.-.++||+|.||+|++|+ ..+++.||+|+++..+  ........+||.+++.++|.|||+++++...  ....-.++
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs--dkkltlvf   80 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS--DKKLTLVF   80 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc--CceeEEeH
Confidence            45666889999999999999 4579999999997654  3445678899999999999999999988755  23444578


Q ss_pred             cccCCCccccccc-cc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-SL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.+++...... .+    ...+....|+.+|+.|+|+      +.||+|.+.+.++..+++|||++|-
T Consensus        81 e~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglara  150 (292)
T KOG0662|consen   81 EFCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARA  150 (292)
T ss_pred             HHhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhh
Confidence            8888776444322 11    2233445789999998876      7999999999999999999999874

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.71  E-value=6.9e-18  Score=162.05  Aligned_cols=139  Identities=16%  Similarity=0.166  Sum_probs=110.1

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ...++|+...+||+|+||.||+|+. .+|..||+|++++..   ..+.+.+..|-.+|...++|+||+|+..|.+.++. 
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~L-  216 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYL-  216 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCee-
Confidence            4568899999999999999999995 479999999998765   45678899999999999999999999888886644 


Q ss_pred             eeeeecccCCCcccccc-ccccccccc----c------ccccccceeeccCCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSASASASLV-SSLTLSRPA----K------GGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~-~~~~~~~~~----~------~~i~~gl~yLH~~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                       +.+|||++|+-...+. ....+.+..    +      ++..+-+.|+|+|+||.|+|++..|-+++.|||++..+
T Consensus       217 -YLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl  291 (550)
T KOG0605|consen  217 -YLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGL  291 (550)
T ss_pred             -EEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchh
Confidence             5567777666444433 222222222    2      34456667999999999999999999999999998544

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.71  E-value=4.8e-18  Score=165.11  Aligned_cols=142  Identities=20%  Similarity=0.237  Sum_probs=112.3

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAV  428 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~  428 (499)
                      .+.+++....+.+.+...||+|+||+||+|++. | .||||++....  ....+.|.+|+.++++-+|.||+=+.|||..
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~  459 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN  459 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeecccc-c-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence            344666666777788899999999999999983 3 69999998765  3467889999999999999999999999987


Q ss_pred             cccceeeeeecccC-CCccccccccc-----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          429 ITFTVCLCLFHHSS-ASASASLVSSL-----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       429 ~~~~~~~~l~~~~~-~~~~~~l~~~~-----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ..+   .++-.+++ ..++..++..+     .....+|.|||+||.|||.      |.|--||.+.++..|+|-|||++-
T Consensus       460 p~~---AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  460 PPL---AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLAT  536 (678)
T ss_pred             Cce---eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEeccccee
Confidence            554   33454444 44444555332     3355668999999999987      788888888888999999999986


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      |
T Consensus       537 v  537 (678)
T KOG0193|consen  537 V  537 (678)
T ss_pred             e
Confidence            5

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.71  E-value=2.2e-18  Score=168.72  Aligned_cols=146  Identities=15%  Similarity=0.197  Sum_probs=110.0

Q ss_pred             ccCHHHHHHHhhhcccccccccCCcceEEEEEeC--CC---CEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccc
Q 010856          350 TFSYLELFRATDEFSENNLIGKGGFGSVYKARLG--DR---MEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIK  421 (499)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~--~~---~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~  421 (499)
                      ++..+.|+...++..+.++||+|+||.||+|+++  ++   ..||+|..+...   .....+|++|+++|++++|||||+
T Consensus       146 PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr  225 (474)
T KOG0194|consen  146 PIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVR  225 (474)
T ss_pred             cccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEE
Confidence            3444556666677777899999999999999963  23   238999987522   455788999999999999999999


Q ss_pred             cceeEEccccceeeeeecccCCC-cccccccccc---c--cccccccccccceeecc------CCCcccEEEeeCCCeEE
Q 010856          422 ILHGVAVITFTVCLCLFHHSSAS-ASASLVSSLT---L--SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEV  489 (499)
Q Consensus       422 l~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~---~--~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~  489 (499)
                      +||++..  ..+.++++|++.|+ +.+.+.....   .  ....+.++|+||+|||+      |+-.-|.|+..++.+|+
T Consensus       226 ~yGVa~~--~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKI  303 (474)
T KOG0194|consen  226 FYGVAVL--EEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKI  303 (474)
T ss_pred             EEEEEcC--CCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEe
Confidence            9999877  34667778877655 4444443321   2  22336899999999987      55568889988888999


Q ss_pred             EEEEEeec
Q 010856          490 ICFVFEIL  497 (499)
Q Consensus       490 ~~f~~~~~  497 (499)
                      +|||+++.
T Consensus       304 SDFGLs~~  311 (474)
T KOG0194|consen  304 SDFGLSRA  311 (474)
T ss_pred             CccccccC
Confidence            99999874

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.71  E-value=2.6e-18  Score=164.88  Aligned_cols=142  Identities=14%  Similarity=0.179  Sum_probs=115.6

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEcccc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITF  431 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~  431 (499)
                      .....+|...+.+|+|+|++|++|+. .+++.||||++.+..   ....+-+.+|..+|.++ .||.||+|+..|.+.+ 
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~-  147 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEE-  147 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeeccc-
Confidence            45567899999999999999999995 579999999998764   23345678999999999 8999999998887743 


Q ss_pred             ceeeeeecccCCCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeeccC
Q 010856          432 TVCLCLFHHSSASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILLN  499 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~~  499 (499)
                      ..++++++..+|+++..+...+    ...+..|.+|+.|++|||+      |+||+|||+++++.++|.|||-+.+|.
T Consensus       148 sLYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~  225 (604)
T KOG0592|consen  148 SLYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILS  225 (604)
T ss_pred             ceEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCC
Confidence            3445566667888877776543    3455667899999999876      899999999999999999999887763

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.70  E-value=7.3e-18  Score=157.76  Aligned_cols=138  Identities=19%  Similarity=0.233  Sum_probs=107.3

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..+|...+.+|+|+||.||++... +|...|||.+........+.+.+|++++++++|||||+.+|.....+...+.+++
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            345777899999999999999964 5999999999776433367789999999999999999999975443333344566


Q ss_pred             cccCCCcc-ccccc-----cccccccccccccccceeecc------CCCcccEEEee-CCCeEEEEEEEeec
Q 010856          439 HHSSASAS-ASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-EPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~-~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-~~~~~~~~f~~~~~  497 (499)
                      ||+.|+.. +.+..     .+...+..++||++||+|||+      ++||.|+|+.. ++.+|++|||.+..
T Consensus        96 Ey~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~  167 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKK  167 (313)
T ss_pred             eccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccc
Confidence            77655443 33332     333455567999999999986      89999999998 69999999998764

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=8.9e-19  Score=154.85  Aligned_cols=140  Identities=19%  Similarity=0.176  Sum_probs=104.7

Q ss_pred             HhhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ...+|.+.++||.|+||+||+++ ..+|..+|.|.++-..  .+.+++...|+.++++++|||||+++++-...+.....
T Consensus        17 ~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evln   96 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLN   96 (375)
T ss_pred             cHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhH
Confidence            34568888999999999999999 5799999999997443  34567899999999999999999999854332333233


Q ss_pred             eeeccc-CCCccccccc--------cccccccccccccccceeec----------cCCCcccEEEeeCCCeEEEEEEEee
Q 010856          436 CLFHHS-SASASASLVS--------SLTLSRPAKGGGFRGCVLWH----------VGVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       436 ~l~~~~-~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH----------~~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++|++ .|++...+..        .++.+.++..|+++||+.+|          +|+||+||.++..+.||+-|||+++
T Consensus        97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r  176 (375)
T KOG0591|consen   97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGR  176 (375)
T ss_pred             HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHh
Confidence            445555 5665444332        22233333478888887555          5899999999999999999999998


Q ss_pred             cc
Q 010856          497 LL  498 (499)
Q Consensus       497 ~~  498 (499)
                      .+
T Consensus       177 ~l  178 (375)
T KOG0591|consen  177 FL  178 (375)
T ss_pred             Hh
Confidence            65

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.69  E-value=2.4e-17  Score=162.33  Aligned_cols=136  Identities=17%  Similarity=0.170  Sum_probs=106.5

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|+..+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+++++.++|+||+++++++...+  ..++++
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  151 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNG--EIQVLL  151 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCC--eEEEEE
Confidence            4566678999999999999996 478999999996543 233567899999999999999999999886633  445677


Q ss_pred             cccCCCcccc-ccccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSASASAS-LVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~~-l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ||+.++.+.. ....+.....++.|++.||+|||+      +++|.||++++++.++++|||++..+
T Consensus       152 e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~  218 (353)
T PLN00034        152 EFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRIL  218 (353)
T ss_pred             ecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceec
Confidence            7776654332 222333445567899999999876      79999999999999999999998653

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.68  E-value=1.4e-17  Score=163.14  Aligned_cols=138  Identities=16%  Similarity=0.144  Sum_probs=102.3

Q ss_pred             HhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVIT  430 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~  430 (499)
                      ..++|.+.+.||+|+||.||+|..      .+++.||+|+++... ....+.+.+|++++..+ +||||++++++|...+
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            446788999999999999999973      235689999997543 23356789999999999 8999999999886543


Q ss_pred             cceeeeeecccCCC-ccccccccc--------------------------------------------------------
Q 010856          431 FTVCLCLFHHSSAS-ASASLVSSL--------------------------------------------------------  453 (499)
Q Consensus       431 ~~~~~~l~~~~~~~-~~~~l~~~~--------------------------------------------------------  453 (499)
                      .. .+++++|+.++ +.+.+....                                                        
T Consensus        85 ~~-~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (338)
T cd05102          85 GP-LMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQET  163 (338)
T ss_pred             Cc-eEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhc
Confidence            33 34456666544 332222110                                                        


Q ss_pred             ----------cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          454 ----------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       454 ----------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                                .....++.|+++||+|||+      ++||.||+++.++.++++|||+++.
T Consensus       164 ~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~  223 (338)
T cd05102         164 DDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARD  223 (338)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccc
Confidence                      0011234699999999877      7999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.68  E-value=3.4e-17  Score=153.74  Aligned_cols=139  Identities=17%  Similarity=0.216  Sum_probs=109.0

Q ss_pred             HHhhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ....+|++..+||.|..++||+|+ .+.++.||||+++..+ ..+.+.+.+|+..|+.++||||++.+..|..  ....+
T Consensus        23 ~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv--~~~LW  100 (516)
T KOG0582|consen   23 LNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVV--DSELW  100 (516)
T ss_pred             CCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEe--cceeE
Confidence            344679999999999999999999 4788999999998765 3346889999999999999999998876666  33566


Q ss_pred             eeecccCCCcccccc---cccccc----ccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASASLV---SSLTLS----RPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~---~~~~~~----~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++.+|.++....+.   ..+...    ..+.+++++||.|||+      ++|+.|||++++|.|++.|||+..-|
T Consensus       101 vVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l  176 (516)
T KOG0582|consen  101 VVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASL  176 (516)
T ss_pred             EeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeee
Confidence            788888666543332   122222    2233788899988765      89999999999999999999987543

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.68  E-value=5.1e-18  Score=152.05  Aligned_cols=140  Identities=19%  Similarity=0.189  Sum_probs=110.0

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC---C--CCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG---D--RMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~---~--~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      +....|+....||+|.||.||+|..+   +  ...+|+|.++..+  ..-.....||+.+++.++|||||.+..++...+
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            44456888999999999999999632   2  2379999997654  233566889999999999999999999988764


Q ss_pred             cceeeeeecccCCCccccccccc---------cccccccccccccceeecc------CCCcccEEEeeC----CCeEEEE
Q 010856          431 FTVCLCLFHHSSASASASLVSSL---------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE----PGVEVIC  491 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~~~---------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~----~~~~~~~  491 (499)
                      .. ..++++|..-++...++...         ...+.+..||..|++|||+      +.||+||++..+    +.|||.|
T Consensus       101 ~~-v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  101 KK-VWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             ce-EEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeec
Confidence            44 45688888877766554322         1233345899999999977      899999999877    9999999


Q ss_pred             EEEeecc
Q 010856          492 FVFEILL  498 (499)
Q Consensus       492 f~~~~~~  498 (499)
                      |||+|+.
T Consensus       180 lGlaR~~  186 (438)
T KOG0666|consen  180 LGLARLF  186 (438)
T ss_pred             ccHHHHh
Confidence            9999864

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1.4e-17  Score=163.41  Aligned_cols=138  Identities=17%  Similarity=0.178  Sum_probs=112.2

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++.|++.+.+|+|+.|.|..|+. .+|+..|||++.+..   ......+.+||.||+-+.||||+++|++|....+. +
T Consensus        10 tiGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~l-y   88 (786)
T KOG0588|consen   10 TIGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHL-Y   88 (786)
T ss_pred             cccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceE-E
Confidence            356789999999999999999995 689999999997663   23356688999999999999999999999774433 3


Q ss_pred             eeeecccCCCcccccccccccccccc----ccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVSSLTLSRPAK----GGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~~~~~~~~~----~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|..+|++++.+...+...++-|    .||+.|++|+|.      |.||+|.|++.+++.||+|||.+-+
T Consensus        89 lvlEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsL  161 (786)
T KOG0588|consen   89 LVLEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASL  161 (786)
T ss_pred             EEEEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeec
Confidence            33555557888888777666655443    788888888765      8999999999999999999999864

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.68  E-value=3.3e-17  Score=156.59  Aligned_cols=135  Identities=16%  Similarity=0.154  Sum_probs=107.3

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|...+.||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++||||+++++++...+  ..+.++
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~   82 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTER--CLTLVF   82 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCC--eEEEEE
Confidence            5688899999999999999996 478999999997543 233456889999999999999999999886633  345678


Q ss_pred             cccCCCccccccccc-----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSSL-----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~~-----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |++.+++...+....     .....++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        83 e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~  152 (288)
T cd07871          83 EYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARA  152 (288)
T ss_pred             eCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceee
Confidence            888877655443221     2234446899999999987      8999999999999999999998764

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.67  E-value=3.7e-17  Score=157.53  Aligned_cols=136  Identities=15%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|...+.||+|+||.||+|+.. +++.||+|++.... ......+.+|+++++.++||||+++++++...+  ....+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv   81 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKE--TLTLV   81 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCC--eEEEE
Confidence            357899999999999999999964 78999999997543 223456789999999999999999999887643  45567


Q ss_pred             ecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.+++...+...     ....+.++.|++.||+|||+      ++||.||++++++.++++|||++..
T Consensus        82 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  152 (303)
T cd07869          82 FEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARA  152 (303)
T ss_pred             EECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCccee
Confidence            888888765544322     12234456899999998877      8999999999999999999998753

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.66  E-value=5.9e-17  Score=158.26  Aligned_cols=142  Identities=19%  Similarity=0.231  Sum_probs=114.1

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ...++.|.+...||+|.|++|..|+. -++..||+|.+++..  ......+.+|+++|+.++|||||+++.+... +...
T Consensus        52 ~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t-~~~l  130 (596)
T KOG0586|consen   52 SNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIET-EATL  130 (596)
T ss_pred             cccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeee-ccee
Confidence            35567799999999999999999995 479999999998765  3334668999999999999999999988765 2344


Q ss_pred             eeeeecccCCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeeccC
Q 010856          434 CLCLFHHSSASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILLN  499 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~~  499 (499)
                      +.+++++.+|+.++.+......    .+....|+.+|++|||+      +.|.+|++++.+-.++|+||||+..++
T Consensus       131 ylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~  206 (596)
T KOG0586|consen  131 YLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFD  206 (596)
T ss_pred             EEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeec
Confidence            4445556677777766554433    44445899999999988      799999999999999999999998753

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.66  E-value=9e-17  Score=156.60  Aligned_cols=136  Identities=13%  Similarity=0.136  Sum_probs=106.4

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..+|...+.||+|+||.||+|+.. +++.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..+
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~   94 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDEN--RVY   94 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCC--EEE
Confidence            467889999999999999999964 68999999997643   234567899999999999999999999887643  345


Q ss_pred             eeecccC-CCcccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSS-ASASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~-~~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|+. |++.+.+.....    ....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        95 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~  167 (329)
T PTZ00263         95 FLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKK  167 (329)
T ss_pred             EEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceE
Confidence            5667664 444444433222    233345789999998876      8999999999999999999998764

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.66  E-value=9.3e-17  Score=158.74  Aligned_cols=139  Identities=11%  Similarity=0.059  Sum_probs=107.0

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      ....++|+..+.||+|+||.||+|+. .+++.||+|++.+..   ....+.+.+|+.+++.++||||+++++++...+  
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~--  116 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK--  116 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--
Confidence            34457899999999999999999996 468899999997532   223456889999999999999999998887633  


Q ss_pred             eeeeeecccCCC-ccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSAS-ASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~-~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++||+.|+ +...+..   .......++.|++.||+|||+      ++||.||++++++.++++|||++..
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~  191 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMK  191 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEeccccee
Confidence            445577777554 4333321   222344456789999998766      8999999999999999999999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.65  E-value=8.5e-17  Score=160.06  Aligned_cols=133  Identities=13%  Similarity=0.091  Sum_probs=103.8

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .|...+.||+|+||+||+|+. .+++.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..+++
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~--~~~lv   79 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKD--NLYFV   79 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCC--EEEEE
Confidence            578889999999999999995 578999999997643   233567899999999999999999999887644  44556


Q ss_pred             ecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +|++.|+ +...+...    +...+.++.|++.||+|||+      ++||.||+++.++.++++|||++.
T Consensus        80 ~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~  149 (381)
T cd05626          80 MDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCT  149 (381)
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCc
Confidence            7777554 43333222    22234445788999988866      899999999999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.65  E-value=1e-16  Score=154.48  Aligned_cols=135  Identities=14%  Similarity=0.097  Sum_probs=102.0

Q ss_pred             hhcccccccccCCcceEEEEEeC-----------------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCcccc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-----------------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKI  422 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-----------------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l  422 (499)
                      ++|...+.||+|+||.||+|...                 ++..||+|.+.... .....+|.+|++++.+++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            46888899999999999999742                 23479999987643 2235679999999999999999999


Q ss_pred             ceeEEccccceeeeeecccCCC-cccccccc-----------------------ccccccccccccccceeecc------
Q 010856          423 LHGVAVITFTVCLCLFHHSSAS-ASASLVSS-----------------------LTLSRPAKGGGFRGCVLWHV------  472 (499)
Q Consensus       423 ~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~-----------------------~~~~~~~~~~i~~gl~yLH~------  472 (499)
                      ++++...+  ...+++||+.++ +.+.+...                       +.....++.|++.||+|||+      
T Consensus        85 ~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~  162 (304)
T cd05096          85 LGVCVDED--PLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHR  162 (304)
T ss_pred             EEEEecCC--ceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence            99987643  345567776544 33222111                       11123456899999999877      


Q ss_pred             CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          473 GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       473 ~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|.||++++++.++++|||+++.
T Consensus       163 dlkp~Nill~~~~~~kl~DfG~~~~  187 (304)
T cd05096         163 DLATRNCLVGENLTIKIADFGMSRN  187 (304)
T ss_pred             CcchhheEEcCCccEEECCCcccee
Confidence            7999999999999999999998764

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=8.9e-17  Score=159.78  Aligned_cols=133  Identities=11%  Similarity=0.094  Sum_probs=104.0

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|...+.||+|+||+||+|+. .+++.||+|++.+..   ....+.+.+|++++++++||||+++++++...+  ..+++
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~--~~~lv   79 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQ--YLYLI   79 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC--eeEEE
Confidence            688889999999999999985 578999999996543   223466889999999999999999999887643  44557


Q ss_pred             ecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +||+.| ++...+....    ...+.++.|++.||+|||+      ++||.||+++.++.++++|||++.
T Consensus        80 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629          80 MEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccc
Confidence            777754 4433332222    2234456789999998877      899999999999999999999874

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=8.3e-17  Score=155.81  Aligned_cols=134  Identities=19%  Similarity=0.289  Sum_probs=112.4

Q ss_pred             hhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ..|+.-..+|+|+.|.||.+. ..+++.||||+++.......+-+.+|+.+|+..+|+|||++++.|...  .+.+++||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~--deLWVVME  350 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVG--DELWVVME  350 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhccc--ceeEEEEe
Confidence            457777889999999999998 467899999999988766677899999999999999999999988874  46778999


Q ss_pred             ccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          440 HSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       440 ~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ||.|+.+..+...    +.....+++++++||+|||.      |+|-.||++..++.||+.||||..
T Consensus       351 ym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFca  417 (550)
T KOG0578|consen  351 YMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCA  417 (550)
T ss_pred             ecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeee
Confidence            9987765554332    33444556888999999876      899999999999999999999975

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=1.2e-16  Score=158.09  Aligned_cols=134  Identities=11%  Similarity=0.081  Sum_probs=105.0

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|+..+.||+|+||+||+|+. .+|+.||||++....   ......+.+|++++..++||||+++++++...+  ..+++
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~~lv   79 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDEN--YLYLI   79 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC--eEEEE
Confidence            688899999999999999996 468999999997543   233456889999999999999999999887643  34556


Q ss_pred             ecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|++.| ++...+....    ...+.++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        80 ~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~  150 (364)
T cd05599          80 MEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTG  150 (364)
T ss_pred             ECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeeccccee
Confidence            777654 4433333222    2234456899999999876      8999999999999999999998754

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.64  E-value=1.5e-16  Score=155.75  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc---cceee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---FTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---~~~~~  435 (499)
                      .|+..+.||+|+||.||+|+. .+|+.||+|++....  .....++.+|++++++++||||+++++++...+   +...+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            377889999999999999995 478999999986432  233457889999999999999999999876432   22356


Q ss_pred             eeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++++++...+...    +.....++.|+++||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        81 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~  152 (338)
T cd07859          81 VVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARV  152 (338)
T ss_pred             EEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccc
Confidence            68888887765544322    22334456899999999977      8999999999999999999998764

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.64  E-value=1.4e-16  Score=155.54  Aligned_cols=134  Identities=15%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|+..+.||+|+||.||+|+.. +++.||+|++....   ....+.+.+|+++++.++||||+++++++...+  ..+++
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~--~~~lv   79 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDE--YLYLA   79 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCC--EEEEE
Confidence            6888999999999999999964 68999999997643   233567889999999999999999998887643  44567


Q ss_pred             ecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +||+.|+ +...+...    +...+.++.|++.||+|||+      +++|.|++++.++.++++|||+++.
T Consensus        80 ~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~  150 (333)
T cd05600          80 MEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKG  150 (333)
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCcc
Confidence            7777554 43333222    22233445799999998876      8999999999999999999998864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.64  E-value=1.6e-16  Score=157.15  Aligned_cols=138  Identities=13%  Similarity=0.092  Sum_probs=106.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ...++|+..+.||+|+||.||+|+. .+++.||+|++.+..   ....+.+.+|+++++.++||||+++++++...+  .
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~--~  117 (370)
T cd05596          40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDK--Y  117 (370)
T ss_pred             CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCC--E
Confidence            3457899999999999999999996 468999999997532   233456789999999999999999998877633  4


Q ss_pred             eeeeecccCCCccccc-cc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSASASASL-VS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l-~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++++||+.|+.+..+ ..   ...+...++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus       118 ~~lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~  191 (370)
T cd05596         118 LYMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK  191 (370)
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceee
Confidence            4557777755533332 21   223344456799999999876      7999999999999999999998764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1e-16  Score=150.50  Aligned_cols=133  Identities=19%  Similarity=0.205  Sum_probs=98.1

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhc--CCCCCccccceeEEcc--ccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKN--IRHRNLIKILHGVAVI--TFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~--l~H~niv~l~~~~~~~--~~~~~~~  436 (499)
                      ....+.+.||+|.||+||+|.+ .|+.||||++...+   .+.+.+|.+|.+.  ++|+||+.+++.-...  ...+.+.
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srd---E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwL  286 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRD---ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWL  286 (513)
T ss_pred             heeEEEEEecCccccceeeccc-cCCceEEEEecccc---hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEE
Confidence            4567789999999999999998 67799999997543   3568889999875  5999999999763221  1223333


Q ss_pred             ee-cccCCCcccccccccc---ccccccccccccceeecc--------------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LF-HHSSASASASLVSSLT---LSRPAKGGGFRGCVLWHV--------------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~-~~~~~~~~~~l~~~~~---~~~~~~~~i~~gl~yLH~--------------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +- ++..|++++.+....-   ..-++++.+|.||++||.              |+|--|||+-+++.++|+|+|+++-
T Consensus       287 vTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~  365 (513)
T KOG2052|consen  287 VTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  365 (513)
T ss_pred             eeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEE
Confidence            33 4556666666544221   123446888999999986              5666789999999999999999873

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.64  E-value=1.8e-16  Score=156.70  Aligned_cols=135  Identities=11%  Similarity=0.085  Sum_probs=104.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|+..+.||+|+||+||+|+. .+++.||+|++.+..   ......+.+|++++.+++||||+++++++...+  ..++
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~--~~~l   78 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKL--NLYL   78 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--eEEE
Confidence            3688899999999999999985 468999999997543   233456889999999999999999998887633  4455


Q ss_pred             eecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++||+.|+ +...+...    +...+.++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        79 v~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~  150 (363)
T cd05628          79 IMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTG  150 (363)
T ss_pred             EEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccc
Confidence            67777554 43333322    22334446889999998876      8999999999999999999998754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.64  E-value=1.3e-16  Score=154.58  Aligned_cols=136  Identities=18%  Similarity=0.132  Sum_probs=102.5

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCC----EEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRM----EVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|+..+.||+|+||.||+|++ .+++    .||+|.++... ....+++.+|+.+++.++||||++++|+|...  ...
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~--~~~   84 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS--TVQ   84 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC--Cce
Confidence            4688899999999999999985 3343    48999986543 23456789999999999999999999988763  233


Q ss_pred             eeeecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++.+++..|.+.+.+...     +.....++.|++.||+|||+      +++|.|+++++++.++++|||+++.+
T Consensus        85 ~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          85 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             eeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccc
Confidence            333334455554444322     12233456899999999987      79999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.64  E-value=1.7e-16  Score=151.59  Aligned_cols=134  Identities=16%  Similarity=0.168  Sum_probs=107.0

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.||+|+||.||+|+.+ +++.||+|++....  ....+.+.+|+++++.++||||+++++++...+  ..++++
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRG--KLYLVF   79 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCC--EEEEEE
Confidence            5888999999999999999964 68899999997643  234567889999999999999999999887633  455678


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ||+.++....+..     .......++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~  149 (287)
T cd07848          80 EYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARN  149 (287)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCccc
Confidence            8887775554322     112234456899999999876      7999999999999999999999764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=6e-17  Score=154.25  Aligned_cols=134  Identities=18%  Similarity=0.172  Sum_probs=103.3

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +=|.+.+.||+|.|++|.+|+. -+|..||||++++.+  .-....+.+|++.|+-++|||||++|++.-. ....+. +
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDT-QTKlyL-i   95 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDT-QTKLYL-I   95 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcc-cceEEE-E
Confidence            4588889999999999999984 589999999998775  2335678999999999999999999987543 222333 3


Q ss_pred             eccc-CCCcccccccc-----ccccccccccccccceeecc------CCCcccEEE-eeCCCeEEEEEEEee
Q 010856          438 FHHS-SASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVF-VLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~-~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~-~~~~~~~~~~f~~~~  496 (499)
                      .|.- +|++++++...     +...++...||++|+.|+|.      +.||+|++| .+-+-||+.||||+-
T Consensus        96 LELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSN  167 (864)
T KOG4717|consen   96 LELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSN  167 (864)
T ss_pred             EEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccc
Confidence            3433 45666665432     23455666899999999876      899999987 567889999999974

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.64  E-value=2.1e-16  Score=156.42  Aligned_cols=144  Identities=14%  Similarity=0.097  Sum_probs=110.3

Q ss_pred             HHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEc
Q 010856          353 YLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAV  428 (499)
Q Consensus       353 ~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~  428 (499)
                      ..++....++|+..+.||+|+||.||+|+. .+++.||+|++.+..   ....+.+.+|+.+++.++||||+++++++..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            344555668899999999999999999996 468899999996532   2234567899999999999999999988876


Q ss_pred             cccceeeeeecccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          429 ITFTVCLCLFHHSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .+  ..++++||+.|+.+..+..    .....+.++.|++.||+|||+      ++||.||+++.++.++++|||++..+
T Consensus       115 ~~--~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~  192 (371)
T cd05622         115 DR--YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (371)
T ss_pred             CC--EEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEc
Confidence            33  4556778876554333222    122234445789999998876      89999999999999999999998653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=1.5e-16  Score=152.35  Aligned_cols=134  Identities=15%  Similarity=0.101  Sum_probs=103.8

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|+..+.||+|+||.||+|.. .+++.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..+++
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv   79 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQR--FLYML   79 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCC--eEEEE
Confidence            688889999999999999996 468999999997543   233566889999999999999999998876533  44556


Q ss_pred             ecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +||+.++ +.+.+...    +.....++.|++.||+|||+      +++|.||++++++.++++|||++..
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~  150 (291)
T cd05612          80 MEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKK  150 (291)
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchh
Confidence            7776544 43333222    22234456899999998877      7999999999999999999998764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.63  E-value=2.7e-16  Score=151.73  Aligned_cols=136  Identities=12%  Similarity=0.026  Sum_probs=99.2

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeC--CCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEc
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLG--DRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAV  428 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~--~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~  428 (499)
                      +....+.|...+.||+|+||+||+|+.+  +++.||||++....     ....+.|.+|++++++++|+|+++.+..+  
T Consensus        13 ~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~--   90 (365)
T PRK09188         13 IPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT--   90 (365)
T ss_pred             cccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc--
Confidence            3345567999999999999999999853  57888999875331     12345689999999999999999633221  


Q ss_pred             cccceeeeeecccCCCccccccccccccccccccccccceeecc------CC-CcccEEEeeCCCeEEEEEEEeecc
Q 010856          429 ITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHV------GV-DFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~-~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                         ...++++||+.|+.+......  ....+..|+++||+|||+      ++ ||.||+++.++.++++|||+++.+
T Consensus        91 ---~~~~LVmE~~~G~~L~~~~~~--~~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188         91 ---GKDGLVRGWTEGVPLHLARPH--GDPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             ---CCcEEEEEccCCCCHHHhCcc--chHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceec
Confidence               123557777766644322111  113445778888888876      78 999999988889999999998854

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.63  E-value=2.7e-16  Score=156.39  Aligned_cols=129  Identities=12%  Similarity=0.058  Sum_probs=101.7

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ..|...+.||+|+||.||+|+. .+++.||+|...      .+.+.+|++++++++|||||++++++...+  ....+++
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~lv~e  163 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNK--FTCLILP  163 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECC--eeEEEEe
Confidence            5699999999999999999995 578999999653      245789999999999999999999886533  3344566


Q ss_pred             ccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+++...+...    ......++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus       164 ~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~  231 (391)
T PHA03212        164 RYKTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACF  231 (391)
T ss_pred             cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccc
Confidence            6666655444322    22234456899999999876      8999999999999999999999853

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.63  E-value=3.1e-16  Score=152.13  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=99.4

Q ss_pred             ccccccCCcceEEEEEeC---CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          366 NNLIGKGGFGSVYKARLG---DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      .+.||+|+||+||+|+..   +++.||+|.+....  ....+.+|++++++++||||+++++++........++++++++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            367999999999999853   46789999986532  2356789999999999999999999886544445566788887


Q ss_pred             CCcccccc-------------ccccccccccccccccceeecc------CCCcccEEEe----eCCCeEEEEEEEeec
Q 010856          443 ASASASLV-------------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV----LEPGVEVICFVFEIL  497 (499)
Q Consensus       443 ~~~~~~l~-------------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~----~~~~~~~~~f~~~~~  497 (499)
                      +++...+.             ......+.++.|++.||+|||+      ++||.|+++.    ..+.++++|||+++.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07868          84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceec
Confidence            76543322             1122234556899999999877      7999999994    446899999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.63  E-value=2.4e-16  Score=150.49  Aligned_cols=133  Identities=10%  Similarity=0.073  Sum_probs=101.9

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      |...+.||+|+||.||+|.. .+|+.||+|.+....   ......+.+|++++++++|+||+++++++...+  ....++
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~--~~~lv~   79 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKD--ALCLVL   79 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCC--eEEEEE
Confidence            67788999999999999995 579999999987543   222346789999999999999999998887643  345566


Q ss_pred             cccCCCccc-cccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASA-SLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~-~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++.+. .+..      .+.....++.|++.||+|||+      +++|.|+++++++.++++|||++..
T Consensus        80 e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~  151 (285)
T cd05631          80 TIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQ  151 (285)
T ss_pred             EecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEE
Confidence            776554332 2211      122233445789999998877      7999999999999999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.63  E-value=2.5e-16  Score=156.50  Aligned_cols=134  Identities=13%  Similarity=0.074  Sum_probs=104.3

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|+..+.||+|+||.||+|+. .+++.||+|++.+..   ....+.+.+|++++++++||||+++++++...+  ..++
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~~l   78 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKD--NLYF   78 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCC--EEEE
Confidence            3688999999999999999995 468999999996543   233567889999999999999999998887643  4455


Q ss_pred             eecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          437 LFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++||+.| ++.+.+....    ...+.++.|++.||+|||+      ++||.|++++.++.++++|||++.
T Consensus        79 v~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598          79 VMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            6777754 4444333222    2234446789999998876      899999999999999999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.63  E-value=3e-16  Score=155.71  Aligned_cols=136  Identities=16%  Similarity=0.131  Sum_probs=107.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc---cceee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---FTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---~~~~~  435 (499)
                      +|+..+.||+|+||.||+|.. .+|+.||+|++....  ....+++.+|+++++.++||||+++++++...+   +...+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            477889999999999999996 578999999986532  223467889999999999999999999886533   12456


Q ss_pred             eeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|+.+++...+...    ......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        81 lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          81 VVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARV  152 (372)
T ss_pred             EEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceee
Confidence            67888887765544322    22244456899999999877      8999999999999999999999864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.62  E-value=3e-16  Score=151.64  Aligned_cols=135  Identities=15%  Similarity=0.160  Sum_probs=106.8

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|...+.||+|+||.||+|+.+ +++.||+|.++... ......+.+|++++++++||||+++++++...+  ...+++
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   83 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDK--SLTLVF   83 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCC--eEEEEE
Confidence            46888999999999999999964 68899999997554 233456789999999999999999999887633  455678


Q ss_pred             cccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|+.+++...+...     ......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        84 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  153 (309)
T cd07872          84 EYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARA  153 (309)
T ss_pred             eCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcccccee
Confidence            88877665544322     12233445799999999877      7999999999999999999998753

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.62  E-value=3.6e-16  Score=152.00  Aligned_cols=128  Identities=15%  Similarity=0.134  Sum_probs=98.5

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      +.||+|+||.||+|+. .+|+.||+|+++...   ......+.+|++++++++||||+++++++...+  ..++++||+.
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~e~~~   78 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHD--RLCFVMEYAN   78 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCC--EEEEEEeCCC
Confidence            3689999999999995 578999999997643   233456789999999999999999998887643  3455677775


Q ss_pred             CC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          443 AS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       443 ~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      |+ +...+...    +.....++.|++.||+|||+      ++||.||+++.++.++++|||++.
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~  143 (323)
T cd05571          79 GGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCK  143 (323)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCc
Confidence            54 33333222    22334445799999998877      799999999999999999999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.62  E-value=2.9e-16  Score=155.00  Aligned_cols=139  Identities=16%  Similarity=0.104  Sum_probs=109.8

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----c
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----F  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~  431 (499)
                      ...+|...+.||+|+||.||+|+. .+|+.||+|++....  ....+.+.+|+.+++.++||||+++++++...+    .
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            457799999999999999999996 468999999996542  233567889999999999999999999875432    2


Q ss_pred             ceeeeeecccCCCcccccccc--ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSASASASLVSS--LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ...+++++++.+++...+...  ......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        99 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~  172 (359)
T cd07876          99 QDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  172 (359)
T ss_pred             ceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccc
Confidence            245668888888765544322  22334456899999999987      7999999999999999999998753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.62  E-value=3e-16  Score=158.61  Aligned_cols=134  Identities=18%  Similarity=0.146  Sum_probs=101.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc------cc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT------FT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~------~~  432 (499)
                      ..+|...+.||+|+||.||+|.. .+++.||||++....    ....+|+.+++.++|||||++++++....      ..
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            45799999999999999999996 468999999885432    23457999999999999999998874321      12


Q ss_pred             eeeeeecccCCCccccccc--------cccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~  497 (499)
                      ...+++||+.+++...+..        .......++.|++.||+|||+      ++||.||+++.++ .++++|||+++.
T Consensus       141 ~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~  220 (440)
T PTZ00036        141 FLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKN  220 (440)
T ss_pred             EEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchh
Confidence            3446788888775443321        122334456799999999877      8999999998665 599999999864

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.62  E-value=4.2e-16  Score=152.32  Aligned_cols=138  Identities=12%  Similarity=0.090  Sum_probs=105.6

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-C-CCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-D-RMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~-~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ..++|...+.||+|+||.||+|+.+ + +..||+|++....   ....+.+.+|+++++.++||||+++++++...+  .
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~  105 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDES--Y  105 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCC--E
Confidence            3456889999999999999999853 3 4689999997543   234567889999999999999999999987643  4


Q ss_pred             eeeeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++++||+.| .+...+....    .....++.|++.||+|||+      +++|.||++++++.++++|||++...
T Consensus       106 ~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~  181 (340)
T PTZ00426        106 LYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVV  181 (340)
T ss_pred             EEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeec
Confidence            4557777754 4444433222    2234456889999998866      89999999999999999999998643

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.62  E-value=2.8e-16  Score=154.14  Aligned_cols=141  Identities=18%  Similarity=0.153  Sum_probs=108.0

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc---
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---  430 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---  430 (499)
                      ....+.|...+.||+|+||+||+|.. .+++.||+|++....  ....+.+.+|++++++++||||+++++++....   
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07878          11 WEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE   90 (343)
T ss_pred             hhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence            34557899999999999999999995 578899999987543  223456789999999999999999998875321   


Q ss_pred             -cceeeeeecccCCCcccccc---ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 -FTVCLCLFHHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 -~~~~~~l~~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ....+.+++++++.+...+.   ........++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  167 (343)
T cd07878          91 NFNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQ  167 (343)
T ss_pred             ccCcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCcccee
Confidence             23345567777666533322   1223344556899999998876      7999999999999999999999764

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.62  E-value=3e-16  Score=152.79  Aligned_cols=138  Identities=14%  Similarity=0.199  Sum_probs=108.0

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCC-CCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG---RAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~  433 (499)
                      ....|++.+.+|.|.||.||+|+.+ +|+.+|+|.+.+...   ...+.+.+|++||+++. |||||.++++|...+  .
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~--~  110 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD--S  110 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC--e
Confidence            3456888999999999999999964 599999999987653   23468999999999998 999999999998754  3


Q ss_pred             eeeeeccc-CCCcccccccc---ccccccccccccccceeecc------CCCcccEEEeeC----CCeEEEEEEEeecc
Q 010856          434 CLCLFHHS-SASASASLVSS---LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE----PGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~-~~~~~~~l~~~---~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~----~~~~~~~f~~~~~~  498 (499)
                      ...++|++ +|++++.+...   +.....++.|++.|+.|||+      +.||+|+++...    +.++++|||+++..
T Consensus       111 ~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~  189 (382)
T KOG0032|consen  111 VYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFI  189 (382)
T ss_pred             EEEEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEc
Confidence            34455555 56666655433   23334445888999998877      899999999754    37999999998754

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.62  E-value=3.8e-16  Score=155.53  Aligned_cols=133  Identities=12%  Similarity=0.100  Sum_probs=103.4

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .|+..+.||+|+||.||+|+. .+++.||+|++.+..   ....+.+.+|++++++++|||||++++++...+  ..+++
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~--~~~lv   79 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKD--NLYFV   79 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCC--EEEEE
Confidence            478889999999999999995 578899999997543   233567889999999999999999999887643  44557


Q ss_pred             ecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +||+.|+ +...+...    +...+.++.|++.||+|||+      ++||.||+++.++.++++|||++.
T Consensus        80 ~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625          80 MDYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCc
Confidence            7777554 43333322    22233445788899988766      899999999999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.62  E-value=5.4e-16  Score=148.40  Aligned_cols=136  Identities=18%  Similarity=0.206  Sum_probs=102.4

Q ss_pred             hcccccccccCCcceEEEEEe-C-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcC---CCCCccccceeEEcc---cc
Q 010856          362 EFSENNLIGKGGFGSVYKARL-G-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNI---RHRNLIKILHGVAVI---TF  431 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l---~H~niv~l~~~~~~~---~~  431 (499)
                      +|...+.||+|+||.||+|+. . +++.||+|+++...  ......+.+|+++++.+   +||||++++++|...   +.
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            588889999999999999985 3 47889999987543  22345677788877665   799999999988532   12


Q ss_pred             ceeeeeecccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ....++++++.+++...+..      .+.....++.|++.||+|||+      +++|.|++++.++.++++|||+++.
T Consensus        82 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~  159 (290)
T cd07862          82 TKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI  159 (290)
T ss_pred             CcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEe
Confidence            23456778887765444322      122334556899999999876      8999999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.62  E-value=3e-16  Score=155.59  Aligned_cols=138  Identities=16%  Similarity=0.121  Sum_probs=101.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      ...++|...+.||+|+||.||+|+.      .++..||+|+++... ....+.+.+|+++++.+ +||||++++++|...
T Consensus        32 ~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~  111 (375)
T cd05104          32 FPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVG  111 (375)
T ss_pred             cchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC
Confidence            3345788899999999999999973      236689999997543 33456789999999999 899999999998764


Q ss_pred             ccceeeeeecccCC-Ccccccccc--------------------------------------------------------
Q 010856          430 TFTVCLCLFHHSSA-SASASLVSS--------------------------------------------------------  452 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~~--------------------------------------------------------  452 (499)
                      +  ..++++||+.| ++...++..                                                        
T Consensus       112 ~--~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (375)
T cd05104         112 G--PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSV  189 (375)
T ss_pred             C--cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccc
Confidence            3  33455666644 332222110                                                        


Q ss_pred             -----------------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          453 -----------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       453 -----------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                                             +.....++.|+++||+|||+      ++||.|+++++++.++++|||++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~  263 (375)
T cd05104         190 RSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARD  263 (375)
T ss_pred             ccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCcccee
Confidence                                   01112335789999999876      7999999999888999999999764

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=9.5e-17  Score=155.28  Aligned_cols=132  Identities=22%  Similarity=0.260  Sum_probs=102.3

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      |...+.||.|+||.||.|+. ++.+.||||++.-..   .....++..|++++.+++|||+|.+.|||.. +. ..+.++
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-e~-TaWLVM  105 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-EH-TAWLVM  105 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-cc-hHHHHH
Confidence            66678899999999999994 678999999996543   2345778999999999999999999999987 23 344567


Q ss_pred             cccCCCcccccc---cccccc--ccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSASASASLV---SSLTLS--RPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~~~~~l~---~~~~~~--~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +|+-|+..+.+.   .....+  ..++.|.+.||+|||+      ++|..|||+.+++.||+.|||-+-
T Consensus       106 EYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAs  174 (948)
T KOG0577|consen  106 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSAS  174 (948)
T ss_pred             HHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchh
Confidence            776665444322   222222  2334788999999987      899999999999999999999653

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.61  E-value=4.6e-16  Score=151.20  Aligned_cols=128  Identities=15%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      +.||+|+||.||+++. .+|+.||+|++....   ......+.+|+++++.++||||+++++++...+  ..++++||+.
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~E~~~   78 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLCFVMEYAN   78 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCC--EEEEEEeCCC
Confidence            3689999999999995 578999999997643   233456788999999999999999998887643  4455777776


Q ss_pred             CCcc-ccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          443 ASAS-ASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       443 ~~~~-~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++.+ ..+..    .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++.
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~  143 (323)
T cd05595          79 GGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCK  143 (323)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhc
Confidence            5533 22222    222344456899999998877      799999999999999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>PHA02988 hypothetical protein; Provisional

Probab=99.61  E-value=4.9e-16  Score=148.04  Aligned_cols=130  Identities=15%  Similarity=0.159  Sum_probs=100.6

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCCcc---HHHHHHHHHHHhcCCCCCccccceeEEc--cccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRA---FESFDVECEMMKNIRHRNLIKILHGVAV--ITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~---~~~~~~E~~il~~l~H~niv~l~~~~~~--~~~~~~~~l~~~~  441 (499)
                      ..+|+|++|.||+|.+ +|+.||||+++......   .+.+.+|++++++++|||||+++|++..  .+.....+++||+
T Consensus        26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            6799999999999998 78899999997654222   4678899999999999999999999866  2333455677887


Q ss_pred             CCCccc-ccccc----ccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          442 SASASA-SLVSS----LTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       442 ~~~~~~-~l~~~----~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .|+.+. .+...    +.....++.|++.|++|||+       +++|.|+++++++.++++|||++..
T Consensus       105 ~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~  172 (283)
T PHA02988        105 TRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKI  172 (283)
T ss_pred             CCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhh
Confidence            665433 33222    12233446789999999985       5889999999999999999999864

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.61  E-value=4.5e-16  Score=148.50  Aligned_cols=137  Identities=18%  Similarity=0.129  Sum_probs=106.5

Q ss_pred             hhcccccccccCCcceEEEEEe-----CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .+|...+.||+|+||.||+|..     .++..||+|.+........+.+.+|++++++++||||+++++++...+....+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            3577889999999999999974     25789999998765545567899999999999999999999987654444455


Q ss_pred             eeecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|+.++ +.+.+..     .+.....++.|++.||+|||+      +++|.|+++.+++.++++|||+++.
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~  157 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCccccc
Confidence            677777554 4333322     122233446899999999877      7999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.61  E-value=5.1e-16  Score=151.17  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      +.||+|+||.||+++. .+|+.||+|++.+..   ......+.+|+++++.++||||+++++++...+  ..++++||+.
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~Ey~~   78 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKD--RLCFVMEYVN   78 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC--EEEEEEeCCC
Confidence            3689999999999995 578999999997643   234567889999999999999999998877633  3455677775


Q ss_pred             CCcc-cccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          443 ASAS-ASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       443 ~~~~-~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++.+ ..+...    +.....++.|++.||+|||+      ++||.||+++.++.++++|||+++
T Consensus        79 ~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~  143 (328)
T cd05593          79 GGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCK  143 (328)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCc
Confidence            5433 222221    22334456899999999877      799999999999999999999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.61  E-value=4.5e-16  Score=163.52  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=104.4

Q ss_pred             hhcccccccccCCcceEEEEEeCC--C----CEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD--R----MEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~--~----~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ...+..+.||+|+||.||.|.+.+  |    ..||+|.+.+.. .+...+|.+|..+|+.++|||||+++|+|.+ .. .
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~-~~-~  769 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD-SG-P  769 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC-CC-C
Confidence            445677899999999999999632  4    349999997765 4557889999999999999999999999998 33 4


Q ss_pred             eeeeeccc-CCCccccccccccc-----------cccccccccccceee------ccCCCcccEEEeeCCCeEEEEEEEe
Q 010856          434 CLCLFHHS-SASASASLVSSLTL-----------SRPAKGGGFRGCVLW------HVGVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       434 ~~~l~~~~-~~~~~~~l~~~~~~-----------~~~~~~~i~~gl~yL------H~~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      .+++.||| +|++..+++.....           ...++.|||+|+.||      |+|+-.-|.|++-+..|||.|||++
T Consensus       770 ~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlA  849 (1025)
T KOG1095|consen  770 PLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLA  849 (1025)
T ss_pred             cEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchh
Confidence            44566666 66666666644211           112258999999987      4577778999999999999999999


Q ss_pred             e
Q 010856          496 I  496 (499)
Q Consensus       496 ~  496 (499)
                      |
T Consensus       850 r  850 (1025)
T KOG1095|consen  850 R  850 (1025)
T ss_pred             H
Confidence            7

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.61  E-value=7e-16  Score=150.54  Aligned_cols=136  Identities=13%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|+..+.||+|+||.||+|+.. ++..+|+|.+.... ....+.+.+|++++++++||||+++++++...+  ..+++
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv   81 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISIC   81 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECC--EEEEE
Confidence            357899999999999999999964 68899999987643 233467899999999999999999999987743  44567


Q ss_pred             ecccCC-Cccccccccc----cccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|+.+ .+.+.+....    .....++.|++.||+|||+       +++|.||++++++.++++|||++..
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~  153 (333)
T cd06650          82 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  153 (333)
T ss_pred             EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchh
Confidence            777755 4433333222    2233445789999998874       6899999999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.61  E-value=5.6e-16  Score=151.13  Aligned_cols=135  Identities=14%  Similarity=0.094  Sum_probs=104.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|+..+.||+|+||.||+++. .+++.||+|++.+..   ....+.+.+|+.++..++|+||+++++++...+  ..++
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~l   78 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDEN--NLYL   78 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCC--eEEE
Confidence            3688899999999999999996 468999999997532   223456889999999999999999998887643  4455


Q ss_pred             eecccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++||+.| ++...+..     .+...+.++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        79 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  151 (331)
T cd05597          79 VMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLR  151 (331)
T ss_pred             EEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceee
Confidence            6776644 44333322     112234456899999999876      7999999999999999999998753

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.60  E-value=3e-16  Score=159.72  Aligned_cols=134  Identities=14%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             hhcccccccccCCcceEEEEEeCC-CCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCcccccee-EEc---cc-cce
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHG-VAV---IT-FTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~-~~~---~~-~~~  433 (499)
                      ..+++.+.|.+|||+.||.|+... |..||+|++-..+....+.+.+||++|+.+. |+|||.+++. ...   .. ..+
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~E  116 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWE  116 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeE
Confidence            346778999999999999999754 4999999997666667888999999999997 9999999983 221   11 356


Q ss_pred             eeeeecccC-CCccccccc------cccccccccccccccceeecc--------CCCcccEEEeeCCCeEEEEEEE
Q 010856          434 CLCLFHHSS-ASASASLVS------SLTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       434 ~~~l~~~~~-~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      +++++||+. |++.+.+..      .+..+.+|..++++|+++||.        |+|.+|+|+.+++..|+||||=
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGS  192 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGS  192 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccc
Confidence            777888887 566665542      233455667899999998766        6777999999999999999994

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.60  E-value=5.9e-16  Score=151.02  Aligned_cols=135  Identities=13%  Similarity=0.081  Sum_probs=104.7

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|...+.||+|+||+||+|+. .+|+.||+|+++...   ....+.+.+|+.+++.++||||+++++++...+  ..+++
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~--~~~lv   79 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKD--NLYLV   79 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCC--eEEEE
Confidence            588889999999999999996 478999999997643   234566889999999999999999998877633  34557


Q ss_pred             ecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++|+.|+ +...+..     .+...+.++.|++.||+|||+      +++|.||+++.++.++++|||++..+
T Consensus        80 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~  152 (330)
T cd05601          80 MEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARL  152 (330)
T ss_pred             ECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeEC
Confidence            7777544 4333322     122334445789999998876      79999999999999999999988643

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.60  E-value=7.6e-16  Score=150.25  Aligned_cols=135  Identities=13%  Similarity=0.086  Sum_probs=105.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|+..+.||+|+||.||+++. .++..||+|.+..... ...+++.+|++++++++||||+++++++...+  ...+++
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   82 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISICM   82 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EEEEEe
Confidence            5788999999999999999996 4688999999976432 33567999999999999999999999887633  345577


Q ss_pred             cccCCCccc-cccc----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASA-SLVS----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|+.|+.+. .+..    .+.....++.|++.||+|||+       +++|.||+++.++.++++|||++..
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  153 (331)
T cd06649          83 EHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  153 (331)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccccc
Confidence            777655433 3322    122234456789999988874       6899999999999999999998754

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.60  E-value=6.3e-16  Score=152.42  Aligned_cols=140  Identities=16%  Similarity=0.100  Sum_probs=109.7

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----  430 (499)
                      ...++|...+.||+|+||.||+|+. .+++.||+|++....  ....+.+.+|+.+++.++||||+++++++...+    
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            3457899999999999999999985 468899999997543  233467889999999999999999999876432    


Q ss_pred             cceeeeeecccCCCcccccccc--ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FTVCLCLFHHSSASASASLVSS--LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ....+.+++++.+++...+...  ......++.|+++||+|||+      ++||.||++++++.++++|||+++.
T Consensus        94 ~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          94 FQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             cceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCccccc
Confidence            2235667888887765543321  22233456899999999887      8999999999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=6.6e-16  Score=145.03  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=108.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .|+..+.||+|+||.||+|.. ++++.||+|+++.... ...+++.+|+.++.+++|+||.+.||.|..  ....+.++|
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~--g~~LwiiMe   91 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK--GTKLWIIME   91 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee--cccHHHHHH
Confidence            466778999999999999995 6799999999987763 446889999999999999999999998876  334456788


Q ss_pred             ccCCCccccccccccc-cc----cccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVSSLTL-SR----PAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~~~~~-~~----~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |++|+....+...... .+    -+.+++..|+.|||.      ++|++|+++..++.|+++|||.+.-+
T Consensus        92 y~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql  161 (467)
T KOG0201|consen   92 YCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQL  161 (467)
T ss_pred             HhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeee
Confidence            8877765544433333 22    223788899999987      89999999998899999999988754

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=4.9e-16  Score=152.94  Aligned_cols=135  Identities=13%  Similarity=0.110  Sum_probs=105.5

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|...+.||+|+||+||+|+. .+|+.||+|+++...   ....+.+.+|++++..++||||+++++++...+  ..+++
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv   79 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEE--HLYLV   79 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCC--eEEEE
Confidence            688899999999999999996 479999999997643   234567889999999999999999998887633  44556


Q ss_pred             ecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++|+.|+ +...+...    ....+.++.|++.||+|||+      +++|.||+++.++.++++|||++..+
T Consensus        80 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~  151 (350)
T cd05573          80 MEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKM  151 (350)
T ss_pred             EcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccC
Confidence            7777554 33333222    22334456899999998876      89999999999999999999987643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=7.2e-16  Score=149.14  Aligned_cols=127  Identities=13%  Similarity=0.099  Sum_probs=97.6

Q ss_pred             cccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC
Q 010856          369 IGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       369 lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      ||+|+||.||+|+.. +++.||+|+++...   ......+.+|++++++++||||+++++++...+  ..+++++|+.|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~~g   78 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPE--KLYLVLAFINGG   78 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCC--eEEEEEcCCCCC
Confidence            699999999999964 68899999997542   234567889999999999999999998887633  344566766554


Q ss_pred             -cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          445 -ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       445 -~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       +...+...    +.....++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        79 ~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~  142 (312)
T cd05585          79 ELFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKL  142 (312)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECccccc
Confidence             43333222    22234446799999999877      7999999999999999999998764

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.60  E-value=9.7e-16  Score=148.66  Aligned_cols=130  Identities=18%  Similarity=0.191  Sum_probs=98.8

Q ss_pred             cccccCCcceEEEEEeC---CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCC
Q 010856          367 NLIGKGGFGSVYKARLG---DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSA  443 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~  443 (499)
                      +.||+|+||.||+|+..   ++..||+|.+....  ....+.+|++++++++||||+++++++...+....+++++++++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            57999999999999953   45789999886543  23467899999999999999999998865444455667888877


Q ss_pred             Cccccccc-------------cccccccccccccccceeecc------CCCcccEEEe----eCCCeEEEEEEEeecc
Q 010856          444 SASASLVS-------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV----LEPGVEVICFVFEILL  498 (499)
Q Consensus       444 ~~~~~l~~-------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~----~~~~~~~~~f~~~~~~  498 (499)
                      ++...+..             .+.....++.|++.||+|||+      ++||.||++.    .++.++++|||+++..
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~  162 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF  162 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceecc
Confidence            65443321             112233456899999998876      7999999993    4568999999998753

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-15  Score=151.26  Aligned_cols=138  Identities=17%  Similarity=0.183  Sum_probs=109.4

Q ss_pred             HHHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEcccc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITF  431 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~  431 (499)
                      .....+|...+++|+|+||+|++++.+ +++.||||+++++.   ..+.+..+.|.+|+... +||.+++++.+|.+.+ 
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~-  442 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE-  442 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCC-
Confidence            345678999999999999999999964 68899999999876   34577889999998877 5999999998887755 


Q ss_pred             ceeeeeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          432 TVCLCLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                       ..+.++||..|+....+...    +...+-+|+.|+.||+|||+      |+|-.|+|++.+|-++++|||+..
T Consensus       443 -~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcK  516 (694)
T KOG0694|consen  443 -HLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCK  516 (694)
T ss_pred             -eEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEeccccccc
Confidence             33446666655543333332    23344446899999999998      789999999999999999999853

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.60  E-value=7.4e-16  Score=152.66  Aligned_cols=138  Identities=16%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             HHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      ...++|+..+.||+|+||.||+|+.      .++..||+|+++... ....+.+.+|+++++.+ +|||||+++++|...
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~  114 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHG  114 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCC
Confidence            4455788999999999999999883      124579999997543 23356788999999999 899999999988763


Q ss_pred             ccceeeeeecccCC-Cccccccc---------------------------------------------------------
Q 010856          430 TFTVCLCLFHHSSA-SASASLVS---------------------------------------------------------  451 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~---------------------------------------------------------  451 (499)
                      .  ..+++++|+.+ ++.+.+..                                                         
T Consensus       115 ~--~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (374)
T cd05106         115 G--PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSS  192 (374)
T ss_pred             C--CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccc
Confidence            3  33456666643 33222211                                                         


Q ss_pred             -----------------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          452 -----------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       452 -----------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                                       .+.....++.|+++||+|||+      ++||.|+++++++.++++|||++..
T Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~  261 (374)
T cd05106         193 QSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARD  261 (374)
T ss_pred             ccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeee
Confidence                             001122345789999998876      8999999999889999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.60  E-value=7.9e-16  Score=150.89  Aligned_cols=137  Identities=17%  Similarity=0.155  Sum_probs=100.6

Q ss_pred             hhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~  431 (499)
                      .++|...+.||+|+||+||+|..      .+++.||||+++... ......+.+|++++.++ +||||+++++++...+.
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   85 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence            35788999999999999999973      357899999997543 22345788999999999 68999999998866443


Q ss_pred             ceeeeeecccCCC-cccccccc----------------------------------------------------------
Q 010856          432 TVCLCLFHHSSAS-ASASLVSS----------------------------------------------------------  452 (499)
Q Consensus       432 ~~~~~l~~~~~~~-~~~~l~~~----------------------------------------------------------  452 (499)
                      .. ++++||+.++ +.+.++..                                                          
T Consensus        86 ~~-~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (343)
T cd05103          86 PL-MVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEE  164 (343)
T ss_pred             ce-EEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhh
Confidence            33 3455666443 32222110                                                          


Q ss_pred             -------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          453 -------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       453 -------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                                   +.....++.|+++||+|||+      +++|.|++++.++.++++|||++..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~  228 (343)
T cd05103         165 EAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARD  228 (343)
T ss_pred             hhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccc
Confidence                         00011234689999998866      8999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.59  E-value=8.6e-16  Score=143.23  Aligned_cols=136  Identities=14%  Similarity=0.175  Sum_probs=105.8

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||.|.-|+||+++.+ ++..+|+|++++..   .+...+...|.+|++.++||.++.||+.+...++ .++
T Consensus        76 l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~-~cl  154 (459)
T KOG0610|consen   76 LRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKY-SCL  154 (459)
T ss_pred             HHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccce-eEE
Confidence            345677799999999999999975 57899999998765   2334567889999999999999999998877443 344


Q ss_pred             eeecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          436 CLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++++|.+|+++...+..      +...+-.|..++-||+|||.      |.||+|||+.++|-+.++||-++.
T Consensus       155 ~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~  227 (459)
T KOG0610|consen  155 VMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSL  227 (459)
T ss_pred             EEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccc
Confidence            45566677765443321      12233335789999999998      899999999999999999998763

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.59  E-value=1.1e-15  Score=151.02  Aligned_cols=134  Identities=11%  Similarity=0.088  Sum_probs=103.8

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|+..+.||+|+||.||+|+. .+++.||+|++....   ....+.+.+|++++.+++||||+++++++...+  ..+++
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~--~~~lv   79 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKR--NLYLI   79 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEEE
Confidence            688889999999999999996 468999999997532   233567889999999999999999998887633  44567


Q ss_pred             ecccCCC-ccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSAS-ASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +||+.|+ +...+....    ...+.++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        80 ~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~  150 (360)
T cd05627          80 MEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTG  150 (360)
T ss_pred             EeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcc
Confidence            7777554 433333222    2233445788888888766      8999999999999999999998753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.59  E-value=9.8e-16  Score=151.58  Aligned_cols=139  Identities=16%  Similarity=0.098  Sum_probs=109.3

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----c
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----F  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~  431 (499)
                      ..++|...+.||+|+||.||+|.. ..++.||||++....  ....+.+.+|+.+++.++||||+++++++...+    .
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            456799999999999999999995 468899999997543  233567889999999999999999998875422    2


Q ss_pred             ceeeeeecccCCCcccccccc--ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSASASASLVSS--LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ...+++++++.+++...+...  ......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  175 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  175 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccc
Confidence            245668888888765544322  22233456899999999876      7999999999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.59  E-value=1.3e-15  Score=147.86  Aligned_cols=129  Identities=13%  Similarity=0.107  Sum_probs=98.8

Q ss_pred             cccccCCcceEEEEEe----CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          367 NLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      +.||+|+||.||+++.    .+|+.||+|+++...  ......+.+|++++++++||||+++++++...+  ..++++||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~e~   79 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEG--KLYLILDF   79 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--EEEEEEcC
Confidence            5799999999999874    358899999997643  223456788999999999999999998887633  44557777


Q ss_pred             cCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+ ++...+..    .+.....++.|+++||+|||+      +++|.||++++++.++++|||++..
T Consensus        80 ~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  147 (318)
T cd05582          80 LRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKE  147 (318)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcc
Confidence            754 44333322    222334456899999999877      7999999999999999999998753

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.59  E-value=5.6e-16  Score=150.88  Aligned_cols=135  Identities=19%  Similarity=0.206  Sum_probs=102.6

Q ss_pred             hcccccccccCCcceEEEEEeC---CC--CEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG---DR--MEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~---~~--~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..++.+.||+|.||.||+|.+.   .|  .-||||.-+..+ ..+.+.|.+|..+|++++|||||+++|+|.+.  ..++
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~--P~Wi  467 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ--PMWI  467 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeecc--ceeE
Confidence            3455678999999999999962   23  358899888755 44578899999999999999999999999763  2333


Q ss_pred             eeecccCCCccccccccccc-----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASASLVSSLTL-----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~~~~-----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++-+-.|++...+......     ....+.||+.||+|||+      ++-.-|||+..++.||+.|||++|-+
T Consensus       468 vmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~  541 (974)
T KOG4257|consen  468 VMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYL  541 (974)
T ss_pred             EEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhc
Confidence            33344456665555443322     12235899999999865      77789999999999999999999854

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.59  E-value=1.2e-15  Score=145.59  Aligned_cols=134  Identities=10%  Similarity=0.075  Sum_probs=102.4

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .|+..+.||+|+||.||++.. .+++.||+|++....   ......+.+|++++++++||||+++++++...+  ....+
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv   78 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLV   78 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCC--eEEEE
Confidence            377789999999999999995 478999999997543   122355788999999999999999998886643  34556


Q ss_pred             ecccCCCccc-cccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASA-SLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~-~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|+.|+.+. .+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~  151 (285)
T cd05605          79 LTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVE  151 (285)
T ss_pred             EeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCcee
Confidence            7777655333 2221      122233446899999998875      8999999999999999999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.59  E-value=1.5e-15  Score=148.19  Aligned_cols=135  Identities=13%  Similarity=0.091  Sum_probs=103.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|...+.||+|+||.||+++. .+++.||+|++.+..   ......+.+|+.++..++|+||+++++++...+  ..++
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~--~~~l   78 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDEN--YLYL   78 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--EEEE
Confidence            3688899999999999999996 468899999997532   223455788999999999999999998887643  3455


Q ss_pred             eecccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++||+.| ++...+..     .+.....++.|++.||+|||+      ++||.|++++.++.++++|||++..
T Consensus        79 v~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~  151 (331)
T cd05624          79 VMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLK  151 (331)
T ss_pred             EEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceee
Confidence            6777654 44433332     112233445789999998876      8999999999999999999998764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.59  E-value=1.1e-15  Score=161.59  Aligned_cols=135  Identities=17%  Similarity=0.078  Sum_probs=104.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|...+.||+|+||.||+|+. .+|+.||+|++....   ....+++.+|++++++++||||+++++++...+  ..+.
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~--~lyL   79 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGD--PVYY   79 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCC--EEEE
Confidence            5788999999999999999996 468999999997543   223567999999999999999999999887643  3445


Q ss_pred             eecccCCCcccc-ccccc---------------cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          437 LFHHSSASASAS-LVSSL---------------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       437 l~~~~~~~~~~~-l~~~~---------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      +++++.|+.+.. +...+               .....++.|+++||+|||+      ++||.||+++.++.++++|||+
T Consensus        80 VMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGL  159 (932)
T PRK13184         80 TMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGA  159 (932)
T ss_pred             EEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCc
Confidence            677776554332 21100               0112345789999999877      8999999999999999999999


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      ++.
T Consensus       160 Ak~  162 (932)
T PRK13184        160 AIF  162 (932)
T ss_pred             cee
Confidence            864

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.59  E-value=3.6e-16  Score=154.08  Aligned_cols=135  Identities=18%  Similarity=0.173  Sum_probs=105.6

Q ss_pred             hcccccccccCCcceEEEEEeC--CCC--EEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG--DRM--EVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~--~~~--~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ...+.+.||+|.||+||+|.+.  .|+  .||||+++..... ...+|.+|+.+|.+++|||+|+|||++.+.   ..++
T Consensus       111 ~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~q---p~mM  187 (1039)
T KOG0199|consen  111 QIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQ---PAMM  187 (1039)
T ss_pred             HHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccc---hhhH
Confidence            3456688999999999999973  454  5899999876633 578999999999999999999999998862   3344


Q ss_pred             eeccc-CCCccccccccccc------cccccccccccceee------ccCCCcccEEEeeCCCeEEEEEEEeeccC
Q 010856          437 LFHHS-SASASASLVSSLTL------SRPAKGGGFRGCVLW------HVGVDFAAFVFVLEPGVEVICFVFEILLN  499 (499)
Q Consensus       437 l~~~~-~~~~~~~l~~~~~~------~~~~~~~i~~gl~yL------H~~~~p~~~l~~~~~~~~~~~f~~~~~~~  499 (499)
                      ++|.. .|.+++.++.....      ....+.|||.||+||      |+|+-.-|+++-....|||+|||+.|-|.
T Consensus       188 V~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg  263 (1039)
T KOG0199|consen  188 VFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALG  263 (1039)
T ss_pred             HhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccC
Confidence            55554 56666666552221      223368999999997      77888899999999999999999998763

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.59  E-value=1.7e-15  Score=147.39  Aligned_cols=128  Identities=15%  Similarity=0.131  Sum_probs=97.8

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      +.||+|+||.||+++. .+|+.||+|++....   ......+.+|+++++.++||||+++++++...+  ..++++||+.
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~--~~~lv~E~~~   78 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD--RLCFVMEYAN   78 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCC--EEEEEEeCCC
Confidence            3689999999999995 578999999997643   223456788999999999999999998876633  4455777776


Q ss_pred             CCcc-ccccc----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          443 ASAS-ASLVS----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       443 ~~~~-~~l~~----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      |+.+ ..+..    .+.....++.|++.||+|||+       ++||.||+++.++.++++|||+++
T Consensus        79 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~  144 (325)
T cd05594          79 GGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCK  144 (325)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCe
Confidence            5533 22222    122234446899999999985       689999999999999999999865

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.58  E-value=7.7e-16  Score=150.39  Aligned_cols=137  Identities=17%  Similarity=0.185  Sum_probs=101.3

Q ss_pred             hhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~  431 (499)
                      -+.|.+.+.||+|+||.||+|..      .+++.||+|+++... ....+.+.+|+.++.++ +||||++++++|...+.
T Consensus         6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~   85 (337)
T cd05054           6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG   85 (337)
T ss_pred             HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC
Confidence            34688999999999999999973      235789999987543 22345688999999999 89999999998876544


Q ss_pred             ceeeeeecccCCCccc-cccc-----------------------------------------------------------
Q 010856          432 TVCLCLFHHSSASASA-SLVS-----------------------------------------------------------  451 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~-~l~~-----------------------------------------------------------  451 (499)
                      .. +.+++|+.++.+. .+..                                                           
T Consensus        86 ~~-~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (337)
T cd05054          86 PL-MVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDE  164 (337)
T ss_pred             CE-EEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhH
Confidence            33 3456666554322 2211                                                           


Q ss_pred             ------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          452 ------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       452 ------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                            .+.....++.|++.||+|||+      +++|.|+++++++.++++|||+++.
T Consensus       165 ~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~  222 (337)
T cd05054         165 LYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARD  222 (337)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchh
Confidence                  111122335789999999876      8999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.58  E-value=1.9e-15  Score=143.80  Aligned_cols=134  Identities=16%  Similarity=0.090  Sum_probs=105.9

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|+..+.||+|+||.||+|+. .+++.||+|.+.... ....+++.+|++++++++||||+++++++...+  ....+++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   79 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVEN--RISICTE   79 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECC--EEEEEEe
Confidence            567788999999999999995 578999999987543 233467899999999999999999999887643  3345677


Q ss_pred             ccCCCccccc-cccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASL-VSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l-~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+.++..... ...+.....++.|++.|++|||+      +++|.|+++..++.++++|||++..
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~  144 (279)
T cd06619          80 FMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQ  144 (279)
T ss_pred             cCCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCccee
Confidence            7766644322 22333445567899999988877      8999999999999999999998864

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.58  E-value=1.3e-15  Score=145.90  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=107.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++.+|...+.||+|+||.||+|.. .+|+.||+|++.... ......+.+|+++++.++|+||+++++++...+  ....
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~--~~~l   80 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKE--TLTF   80 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCC--eEEE
Confidence            356799999999999999999985 468899999996543 223346789999999999999999999887633  3445


Q ss_pred             eecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.+++...+...     ......++.|++.||+|||+      +++|.|++++.++.++++|||+++.
T Consensus        81 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~  152 (291)
T cd07870          81 VFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARA  152 (291)
T ss_pred             EEecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccc
Confidence            7788877765443221     12234456899999998877      8999999999999999999998753

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.58  E-value=1.8e-15  Score=142.98  Aligned_cols=135  Identities=18%  Similarity=0.191  Sum_probs=106.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .+|+..+.+|+|+||.||+|+. .+++.||+|++........+.+.+|+.++++++||||+++++++...+  ..+++++
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~--~~~iv~e   86 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSRE--KLWICME   86 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCC--EEEEEEe
Confidence            5688999999999999999995 578899999997655445567889999999999999999999887633  4455777


Q ss_pred             ccCCCccc-ccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASA-SLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~-~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.+. .+...    ......++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~  155 (267)
T cd06646          87 YCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAK  155 (267)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCcccee
Confidence            77655433 33222    12234446899999998877      7899999999999999999998753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.58  E-value=1.9e-15  Score=143.86  Aligned_cols=127  Identities=14%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             cccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC
Q 010856          369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       369 lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      ||+|+||+||+|+. .+++.||+|.+....   ....+.+..|+++++.++||||+++.+++....  ..+.+++|+.|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~e~~~~g   78 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKT--DLCLVMTIMNGG   78 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCC--eEEEEEeCCCCC
Confidence            69999999999996 478999999997543   123456788999999999999999988776532  345677777655


Q ss_pred             ccc-ccc--------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          445 ASA-SLV--------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       445 ~~~-~l~--------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+. .+.        ..+.....++.|++.||+|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~  146 (280)
T cd05608          79 DLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVE  146 (280)
T ss_pred             CHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcccee
Confidence            433 211        1122233446899999999877      7999999999999999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.58  E-value=1.3e-15  Score=146.52  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=106.1

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.|...+.||+|+||.||+|..+ +++.||+|.+.... ......+.+|++++++++||||+++++++...+  ....++
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~--~~~lv~   83 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK--SLTLVF   83 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCC--eEEEEE
Confidence            56888999999999999999964 68899999997543 233456789999999999999999999987633  445678


Q ss_pred             cccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +|+.+++...+...     ......++.|+++||+|||+      +++|.||+++.++.++++|||++.
T Consensus        84 e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  152 (301)
T cd07873          84 EYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLAR  152 (301)
T ss_pred             eccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchh
Confidence            88877665443321     12234446789999998877      799999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.58  E-value=1.7e-15  Score=147.32  Aligned_cols=132  Identities=16%  Similarity=0.128  Sum_probs=99.2

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHH---hcCCCCCccccceeEEccccceee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMM---KNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il---~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      |...+.||+|+||.||+|+. .+++.||+|++++..   ....+.+.+|++++   +.++||||+++++++...+  ..+
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~--~~~   78 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTED--HVC   78 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCC--EEE
Confidence            56678999999999999996 478999999997543   22345677777665   5678999999999887633  445


Q ss_pred             eeecccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          436 CLFHHSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++||+.|+.+.....    .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 lv~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~  149 (324)
T cd05589          79 FVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCK  149 (324)
T ss_pred             EEEcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCc
Confidence            6777776554332221    222333456889999998876      899999999999999999999764

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.58  E-value=1.5e-15  Score=151.13  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=64.4

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCC-CCCccccceeEEcc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIR-HRNLIKILHGVAVI  429 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~  429 (499)
                      ...+.|.+.+.||+|+||.||+|...      .+..||+|+++... ....+.+.+|++++++++ |||||++++++...
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            34567888999999999999999841      23479999997543 233567999999999996 99999999998663


Q ss_pred             ccceeeeeecccC-CCc
Q 010856          430 TFTVCLCLFHHSS-ASA  445 (499)
Q Consensus       430 ~~~~~~~l~~~~~-~~~  445 (499)
                      +  ..++++||+. |++
T Consensus       114 ~--~~~lv~Ey~~~g~L  128 (400)
T cd05105         114 G--PIYIITEYCFYGDL  128 (400)
T ss_pred             C--ceEEEEEecCCCcH
Confidence            3  3344556654 443

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.58  E-value=1.7e-15  Score=147.25  Aligned_cols=128  Identities=13%  Similarity=0.127  Sum_probs=96.9

Q ss_pred             cccccCCcceEEEEEe----CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          367 NLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.||+|+||.||+++.    .+++.||+|+++...    ......+.+|+++++.++||||+++++++...+  ..++++
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~--~~~lv~   79 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGG--KLYLIL   79 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCC--eEEEEE
Confidence            5799999999999984    357899999997542    223456789999999999999999999887633  345567


Q ss_pred             cccCCC-cccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSAS-ASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~-~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +|+.|+ +...+.....    ....++.|++.||+|||+      +++|.||+++.++.++++|||+++
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  148 (323)
T cd05584          80 EYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCK  148 (323)
T ss_pred             eCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCe
Confidence            776554 4333322222    223345788999998866      899999999999999999999864

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.58  E-value=1.5e-15  Score=147.90  Aligned_cols=128  Identities=13%  Similarity=0.124  Sum_probs=98.2

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      ++||+|+||.||+|+. .+++.||+|++++..   ....+.+.+|+.++..+ +||||+++++++...+  ..++++||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~--~~~lv~e~~   78 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTES--RLFFVIEFV   78 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCC--EEEEEEeCC
Confidence            4689999999999996 468999999997643   23345688999999988 7999999999887633  445567777


Q ss_pred             CCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+ +...+..    .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~  144 (329)
T cd05588          79 SGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK  144 (329)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccc
Confidence            554 3333322    222334456899999998877      799999999999999999999875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.58  E-value=1.3e-15  Score=143.84  Aligned_cols=134  Identities=15%  Similarity=0.167  Sum_probs=103.5

Q ss_pred             hhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .+|+..+.||+|+||.||+|...    .+..||+|.++.... .....+.+|+.++++++||||+++++++...+  ...
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~   82 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGN--TMM   82 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCC--CcE
Confidence            46888899999999999999852    367899999976532 33467899999999999999999999887633  445


Q ss_pred             eeecccCCCcccc-ccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          436 CLFHHSSASASAS-LVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       436 ~l~~~~~~~~~~~-l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++||+.++.+.. +..     .+.....++.|++.|++|||+      +++|.|+++++++.++++|||...
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~  155 (266)
T cd05064          83 IVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQ  155 (266)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccc
Confidence            6788887664443 222     122234456889999998876      799999999999999999999753

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.58  E-value=1e-15  Score=144.11  Aligned_cols=138  Identities=20%  Similarity=0.225  Sum_probs=109.0

Q ss_pred             HHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .+..+|+..+.||+|+||.||+|...++..+|+|.+........+++.+|+.+++.++||||+++++++...+  ..+++
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv   80 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGE--PVYII   80 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCC--CeEEE
Confidence            3456799999999999999999998778999999997665545678999999999999999999999887643  34567


Q ss_pred             ecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.+ .+.+.+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~  153 (261)
T cd05148          81 TELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARL  153 (261)
T ss_pred             EeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhh
Confidence            777755 44333322      112233456788999998876      7999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.57  E-value=1.9e-15  Score=147.27  Aligned_cols=128  Identities=12%  Similarity=0.106  Sum_probs=97.3

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||.||+|+. .+++.||+|++++..   ....+.+.+|+.++.++ +||||+++++++...+  ..++++||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~--~~~lv~E~~   78 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RLFFVIEYV   78 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCC--EEEEEEeCC
Confidence            4689999999999996 468899999997643   23345678899988776 8999999999887633  445567777


Q ss_pred             CCCcc-ccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SASAS-ASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~~~-~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .++.+ ..+..    .+.....++.|++.||+|||+      +++|.||+++.++.++++|||+++
T Consensus        79 ~~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~  144 (329)
T cd05618          79 NGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK  144 (329)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccc
Confidence            65433 22222    222334456799999998876      899999999999999999999875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.57  E-value=3.6e-16  Score=136.12  Aligned_cols=136  Identities=15%  Similarity=0.046  Sum_probs=105.4

Q ss_pred             hhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc--c--cee
Q 010856          360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT--F--TVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~--~--~~~  434 (499)
                      ...|.+.+.+|+|+|+.||.++ ..++..||+|++.-...++.+..++|++.-++++||||++++++....+  .  ..+
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            4568899999999999999999 5789999999997766667788999999999999999999998765422  1  234


Q ss_pred             eeeecccCCCcccccccc--------ccccccccccccccceee--------ccCCCcccEEEeeCCCeEEEEEEEe
Q 010856          435 LCLFHHSSASASASLVSS--------LTLSRPAKGGGFRGCVLW--------HVGVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~--------~~~~~~~~~~i~~gl~yL--------H~~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      .++.+|..|.+.+.+...        +.....+..|+++||++|        |+|+||.|+++.+++..++.|||=.
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~  176 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSA  176 (302)
T ss_pred             EEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCc
Confidence            445566677776655321        112223347788887755        5589999999999999999999954

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.57  E-value=1.7e-15  Score=160.50  Aligned_cols=137  Identities=13%  Similarity=0.099  Sum_probs=106.6

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|.+.+.||+|+||.||+|+.. +++.||+|+++....   ...+.+.+|+.+++.++||||+++++++...+  ..+
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~   80 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSAN--NVY   80 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECC--EEE
Confidence            357889999999999999999964 689999999975432   22467889999999999999999998776533  445


Q ss_pred             eeecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++|+.|+ +...+..    .+.....++.||+.||+|||+      ++||.||++..++.++++|||+++..
T Consensus        81 lVmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~  154 (669)
T cd05610          81 LVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVT  154 (669)
T ss_pred             EEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCccc
Confidence            577777544 4333322    223345566899999998876      89999999999999999999998753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.57  E-value=9.5e-16  Score=153.70  Aligned_cols=134  Identities=18%  Similarity=0.147  Sum_probs=101.0

Q ss_pred             cccccccccCCcceEEEEEe-CC----CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GD----RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~----~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ....++||+|+||+||+|.+ +.    +.+||+|++.... .+..+++..|+-+|.+++|||+++++|+|....   ..+
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~---~ql  774 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST---LQL  774 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch---HHH
Confidence            34568899999999999995 44    3579999997655 445678999999999999999999999997632   223


Q ss_pred             eeccc-CCCcccccccccc-----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeeccC
Q 010856          437 LFHHS-SASASASLVSSLT-----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILLN  499 (499)
Q Consensus       437 l~~~~-~~~~~~~l~~~~~-----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~~  499 (499)
                      +.++| .|.+++.++....     ....+..|||+||.|||.      ++-.-|+||-..+-|++.|||++.+|.
T Consensus       775 vtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~  849 (1177)
T KOG1025|consen  775 VTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLA  849 (1177)
T ss_pred             HHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccC
Confidence            34455 3444444433211     122335899999999965      677789999999999999999998874

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.57  E-value=2.5e-17  Score=142.86  Aligned_cols=137  Identities=16%  Similarity=0.289  Sum_probs=106.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .+.|++.++||+|.|+.|+++.. ++|+.+|+|+++...  ..+.+++.+|++|-+.++|||||++.+.+.. +. ..++
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~-~~-~~yl   87 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-ES-FHYL   87 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcc-cc-eeEE
Confidence            46688889999999999999984 689999999986543  4567889999999999999999999987755 23 3345


Q ss_pred             eecccCC-Cccccccccccccc----cccccccccceeecc------CCCcccEEEeeC---CCeEEEEEEEeecc
Q 010856          437 LFHHSSA-SASASLVSSLTLSR----PAKGGGFRGCVLWHV------GVDFAAFVFVLE---PGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~~~~~~----~~~~~i~~gl~yLH~------~~~p~~~l~~~~---~~~~~~~f~~~~~~  498 (499)
                      +++.|.| ++...+....-+.+    ...+||.+||.|+|.      +.||.|.++...   --||++|||.++-+
T Consensus        88 vFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l  163 (355)
T KOG0033|consen   88 VFDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEV  163 (355)
T ss_pred             EEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEe
Confidence            7787754 45444443333333    224899999999976      899999999643   37899999999855

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.57  E-value=1.6e-15  Score=145.05  Aligned_cols=137  Identities=20%  Similarity=0.229  Sum_probs=102.4

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcC---CCCCccccceeEEccc---cc
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNI---RHRNLIKILHGVAVIT---FT  432 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l---~H~niv~l~~~~~~~~---~~  432 (499)
                      +|...+.||+|+||+||+|+. .+++.||+|.++...  ......+.+|+++++.+   +||||+++++++....   ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            377889999999999999996 478999999987543  22234567788877665   7999999999876421   12


Q ss_pred             eeeeeecccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          433 VCLCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ....+++++.+++...+..      .+.....++.|++.||+|||+      +++|.|+++++++.++++|||++..+
T Consensus        81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~  158 (288)
T cd07863          81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIY  158 (288)
T ss_pred             eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccc
Confidence            3455778887765444322      122334456899999999876      89999999999999999999998643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.57  E-value=2.4e-15  Score=143.50  Aligned_cols=134  Identities=18%  Similarity=0.214  Sum_probs=105.1

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.||+|+||.||+|+. .+++.||+|.+....  ....+.+.+|+.++++++||||+++++++...+  ..++++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQES--RLYLIF   78 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCC--eEEEEE
Confidence            477889999999999999996 478999999986543  233467889999999999999999999987633  445677


Q ss_pred             cccCCCccccccc-------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.+++...+..       .+.....++.|+++||+|||+      +++|.||++++++.++++|||++..
T Consensus        79 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  150 (285)
T cd07861          79 EFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARA  150 (285)
T ss_pred             ecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceee
Confidence            7877665443321       122233446899999999988      7999999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.57  E-value=2.7e-15  Score=141.18  Aligned_cols=136  Identities=17%  Similarity=0.156  Sum_probs=105.5

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|...+.+|+|+||.||+|...+++.||+|.++... ...+++.+|++++++++||||+++++++...+  ..+.+++
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   81 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEE--PIYIVTE   81 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCC--Ceeeeee
Confidence            45688889999999999999997777889999987543 33567999999999999999999999876633  3455677


Q ss_pred             cc-CCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HS-SASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~-~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +. ++.+.+.+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..+
T Consensus        82 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~  153 (261)
T cd05068          82 LMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVI  153 (261)
T ss_pred             cccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEc
Confidence            77 4544433322      122234445788999988776      79999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.57  E-value=3.6e-15  Score=142.18  Aligned_cols=135  Identities=16%  Similarity=0.167  Sum_probs=103.3

Q ss_pred             cccccccccCCcceEEEEEe-----CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      |...+.||+|+||+||++.+     .++..||+|.++.... ...+.+.+|++++++++||||+++++++...+....++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            37789999999999988653     3578999999975432 34567889999999999999999999886644334455


Q ss_pred             eecccCCCcccccc----ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLV----SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~----~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.++.+....    ..+.....++.|++.|++|||+      +++|.|++++.++.++++|||+++.
T Consensus        86 v~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~  156 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKA  156 (283)
T ss_pred             EecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccc
Confidence            67777655433322    1233344556899999999887      7999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.57  E-value=1.7e-15  Score=152.77  Aligned_cols=131  Identities=12%  Similarity=0.062  Sum_probs=101.6

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ...|...+.||+|+||.||+|... +++.||+|...      ...+.+|++++++++|+|||++++++...+  ...+++
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~--~~~lv~  239 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGG--LTCLVL  239 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECC--EEEEEE
Confidence            346888999999999999999964 58899999542      234678999999999999999999887633  233455


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++.+++...+..     .+.....++.|+++||+|||+      ++||.||+++.++.++++|||+++.+
T Consensus       240 e~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~  310 (461)
T PHA03211        240 PKYRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFA  310 (461)
T ss_pred             EccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceec
Confidence            6666666554432     223344567899999998876      89999999999999999999998643

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.57  E-value=3e-15  Score=145.41  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=97.4

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+++.||+|++....   ....+.+..|.+++..+ +||||+++++++...+  ..++++||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~--~~~lv~E~~   78 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKD--RLFFVMEYV   78 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--eEEEEEeCC
Confidence            4689999999999996 468899999997642   23345678899998865 8999999999887643  345577777


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .++ +...+...    +.....++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~  144 (321)
T cd05591          79 NGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCK  144 (321)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccce
Confidence            554 33333222    22234456889999998876      899999999999999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.57  E-value=2.3e-15  Score=153.89  Aligned_cols=134  Identities=13%  Similarity=0.031  Sum_probs=102.9

Q ss_pred             hcccccccccCCcceEEEEEe-CC-CCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~-~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .|...+.+|+|+||.||+|.. .+ ++.||+|.+..........+.+|+++++.++|||||++++++...+  ..++++|
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~--~~~lv~E  145 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDD--KLLLIME  145 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECC--EEEEEEE
Confidence            388899999999999999985 34 6789999876544444556788999999999999999999987643  4556778


Q ss_pred             ccCCCcc-ccccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASAS-ASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~-~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+.|+.+ ..+..        .+.....++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus       146 ~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~  218 (478)
T PTZ00267        146 YGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQ  218 (478)
T ss_pred             CCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCcee
Confidence            8755433 32211        111223345789999998876      8999999999999999999999864

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.56  E-value=3e-15  Score=141.37  Aligned_cols=135  Identities=19%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|+..+.||+|+||.||+|+. .+++.||+|.+....   ......+.+|++++++++||||+++++++...+  ....
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~   79 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDN--ELNI   79 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECC--eEEE
Confidence            5788999999999999999995 578999999886533   233456899999999999999999999887643  3445


Q ss_pred             eecccCCCccccccc---------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVS---------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~---------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.++....+..         .......++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~  155 (267)
T cd08228          80 VLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRF  155 (267)
T ss_pred             EEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECcccccee
Confidence            677776553332211         111223446799999999988      7999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.56  E-value=1.1e-15  Score=150.92  Aligned_cols=132  Identities=20%  Similarity=0.240  Sum_probs=103.0

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-C-----CCccccceeEEcccccee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-H-----RNLIKILHGVAVITFTVC  434 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H-----~niv~l~~~~~~~~~~~~  434 (499)
                      .|.+.++||+|+||+|.+|.. ++++.||||+++... .-..+-..|++++..++ |     -|+|++++++.--+  +.
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~--Hl  263 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN--HL  263 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh-HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc--ce
Confidence            688999999999999999995 679999999997544 23455678999999886 4     38999999876522  44


Q ss_pred             eeeecccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeC--CCeEEEEEEEee
Q 010856          435 LCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE--PGVEVICFVFEI  496 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~--~~~~~~~f~~~~  496 (499)
                      .+++|.+...+.+.+..      .....+.++.||+.||.+||+      |.||+|||+.+.  ..|||||||-+.
T Consensus       264 ciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc  339 (586)
T KOG0667|consen  264 CIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSC  339 (586)
T ss_pred             eeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEeccccc
Confidence            45677777776665542      234566777899888887766      999999999864  599999999764

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.56  E-value=2.7e-15  Score=142.98  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=101.4

Q ss_pred             hhcccccccccCCcceEEEEEe-----CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|+..+.||+|+||.||+|..     .++..||+|.+.... ......+.+|++++++++||||+++++++...+  ..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~   82 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ--PV   82 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC--ce
Confidence            4677889999999999999983     246789999997543 233467899999999999999999999877633  34


Q ss_pred             eeeecccCCC-ccccccc---------------------cccccccccccccccceeecc------CCCcccEEEeeCCC
Q 010856          435 LCLFHHSSAS-ASASLVS---------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG  486 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~---------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~  486 (499)
                      +.++|++.++ +.+.+..                     .+.....++.|++.||+|||+      +++|.|+++++++.
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~  162 (283)
T cd05090          83 CMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLH  162 (283)
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCc
Confidence            4566766544 3322211                     011122345789999999887      79999999999999


Q ss_pred             eEEEEEEEeec
Q 010856          487 VEVICFVFEIL  497 (499)
Q Consensus       487 ~~~~~f~~~~~  497 (499)
                      ++++|||++..
T Consensus       163 ~kl~dfg~~~~  173 (283)
T cd05090         163 VKISDLGLSRE  173 (283)
T ss_pred             EEecccccccc
Confidence            99999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.56  E-value=4.1e-15  Score=141.34  Aligned_cols=127  Identities=11%  Similarity=0.097  Sum_probs=95.6

Q ss_pred             cccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC
Q 010856          369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       369 lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      ||+|+||.||+++. .+|+.||+|.+....   ....+.+..|++++++++||||+++++++...  ...++++||+.|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~--~~~~lv~e~~~g~   78 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESK--THLCLVMSLMNGG   78 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecC--CeEEEEEecCCCC
Confidence            69999999999996 469999999996533   12234567799999999999999998887653  3455677777555


Q ss_pred             ccc-cccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          445 ASA-SLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       445 ~~~-~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+. .+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~  144 (277)
T cd05607          79 DLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVE  144 (277)
T ss_pred             CHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeee
Confidence            332 2211      111223345789999998886      8999999999999999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.56  E-value=3.3e-15  Score=141.01  Aligned_cols=137  Identities=18%  Similarity=0.178  Sum_probs=104.4

Q ss_pred             hhhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|+..+.||+|+||.||+|+.+    +...||+|.++... .....+|.+|+.++++++||||+++++++...+  ..
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   80 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR--PV   80 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCC--ce
Confidence            356888999999999999999863    24579999987544 334567899999999999999999999887633  34


Q ss_pred             eeeecccCCCccc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSASASA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~~~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++++++.++.+. .+..     .+.....++.|++.|++|||+      +++|.|++++.++.++++|||+++.+
T Consensus        81 ~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~  156 (266)
T cd05033          81 MIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRL  156 (266)
T ss_pred             EEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcc
Confidence            5567777654333 2221     122234446889999999877      79999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.56  E-value=3e-15  Score=145.00  Aligned_cols=129  Identities=17%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhc-CCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKN-IRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~-l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+++.||+|+++...   ....+.+..|.+++.. .+||||+++++++...+  ..++++|++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~--~~~lv~e~~   78 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKE--HLFFVMEYL   78 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCC--EEEEEEcCC
Confidence            3689999999999996 468899999997543   2334556778777765 48999999998887633  445567777


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .|+ +...+...    ......++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        79 ~gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~  145 (316)
T cd05592          79 NGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKE  145 (316)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeE
Confidence            554 33333222    22234456899999999877      7999999999999999999998753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.56  E-value=3.4e-15  Score=145.05  Aligned_cols=128  Identities=18%  Similarity=0.157  Sum_probs=95.0

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHH-HHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECE-MMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~-il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      ++||+|+||.||+|+. .+++.||+|++.+..   ......+.+|.. +++.++||||+++++++...+  ..++++||+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~--~~~lv~e~~   78 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAE--KLYFVLDYV   78 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCC--EEEEEEcCC
Confidence            3689999999999996 468999999997543   222345666664 678899999999998887643  445577777


Q ss_pred             CCCcc-cccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SASAS-ASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~~~-~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+.+ ..+...    ......++.|+++||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~  144 (321)
T cd05603          79 NGGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCK  144 (321)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCc
Confidence            65433 222221    22233446899999998876      899999999999999999999865

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.56  E-value=3.3e-15  Score=140.18  Aligned_cols=133  Identities=14%  Similarity=0.111  Sum_probs=103.7

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      ++|+..+.+|+|+||.||.|...++..+|+|.+.... ...+.+.+|+.++++++||||+++++++...+  ..+.++++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~   80 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR--PIYIVTEY   80 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCC--CcEEEEEc
Confidence            4688889999999999999987666779999987543 33467999999999999999999999886643  34556777


Q ss_pred             cCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          441 SSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       441 ~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +.++ +.+.+..     .+.....++.|++.|++|||+      +++|.||++++++.++++|||.+.
T Consensus        81 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~  148 (256)
T cd05113          81 MSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSR  148 (256)
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccce
Confidence            6544 3333322     122234456899999999876      799999999999999999999875

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.56  E-value=3.5e-15  Score=144.09  Aligned_cols=134  Identities=12%  Similarity=0.064  Sum_probs=104.4

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|...+.||+|+||.||+++. .++..+|+|.++... ....+++.+|++++++++||||+++++++...+  ...+++|
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   79 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDG--EISICME   79 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--EEEEEee
Confidence            588889999999999999995 468899999987543 223466889999999999999999999987643  4455777


Q ss_pred             ccCCC-ccccccc----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+.|+ +...+..    .......++.|+++||+|||+       +++|.|+++++++.++++|||++..
T Consensus        80 y~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (308)
T cd06615          80 HMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  149 (308)
T ss_pred             ccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccc
Confidence            77654 4333322    223344556899999999985       5899999999999999999998753

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.55  E-value=2.7e-15  Score=142.10  Aligned_cols=134  Identities=18%  Similarity=0.205  Sum_probs=98.1

Q ss_pred             ccccccccCCcceEEEEEeC-CCC--EEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----ccee
Q 010856          364 SENNLIGKGGFGSVYKARLG-DRM--EVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----FTVC  434 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~~-~~~--~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~~~~  434 (499)
                      .+.+.||+|+||.||+|+.. ++.  .+|+|.++...  ....+.+.+|+++++.++||||+++++++....    ....
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            45688999999999999964 343  58999886543  233567899999999999999999999875421    1233


Q ss_pred             eeeecccCCC-cccccc----------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSAS-ASASLV----------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~----------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++|+.++ +...+.          ..+.....++.|++.|++|||+      +++|.|++++.++.++++|||++..
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  161 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKK  161 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccc
Confidence            4556676544 322221          1112233445789999999986      7999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.55  E-value=2.4e-15  Score=159.77  Aligned_cols=141  Identities=13%  Similarity=0.161  Sum_probs=106.4

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .....+|.+.+.||+|+||+||+|+. .++..||+|.+....  ......+.+|+.++++++|||||+++++|...+...
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            34456899999999999999999996 468899999987543  234567899999999999999999999886644444


Q ss_pred             eeeeecccCCC-ccccccc--------cccccccccccccccceeecc-------------CCCcccEEEeeC-------
Q 010856          434 CLCLFHHSSAS-ASASLVS--------SLTLSRPAKGGGFRGCVLWHV-------------GVDFAAFVFVLE-------  484 (499)
Q Consensus       434 ~~~l~~~~~~~-~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~-------------~~~p~~~l~~~~-------  484 (499)
                      .+++++|+.++ +...+..        .+.....++.||+.||+|||+             ++||.||++..+       
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i  168 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKI  168 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccc
Confidence            56677777654 4333321        222344556899999999885             689999999642       


Q ss_pred             ----------CCeEEEEEEEeec
Q 010856          485 ----------PGVEVICFVFEIL  497 (499)
Q Consensus       485 ----------~~~~~~~f~~~~~  497 (499)
                                +.++++|||++..
T Consensus       169 ~~~~~n~ng~~iVKLsDFGlAr~  191 (1021)
T PTZ00266        169 TAQANNLNGRPIAKIGDFGLSKN  191 (1021)
T ss_pred             cccccccCCCCceEEccCCcccc
Confidence                      3489999998764

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.55  E-value=3.1e-15  Score=140.36  Aligned_cols=133  Identities=17%  Similarity=0.131  Sum_probs=103.1

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .+|+..+.||+|+||.||+|+.+++..+|+|.+.... ...+++.+|++++++++||||+++++++...+  ..+.++++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~iv~e~   80 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK--PLYIVTEF   80 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCC--CEEEEEEc
Confidence            4688889999999999999998777789999886443 23467899999999999999999999886633  34556777


Q ss_pred             cC-CCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          441 SS-ASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       441 ~~-~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +. |.+.+.++.     .+.....++.|++.||+|||+      +++|.|+++++++.++++|||.+.
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~  148 (256)
T cd05114          81 MENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTR  148 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCcc
Confidence            65 444433322     112234445789999998876      789999999999999999999775

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.55  E-value=2.2e-15  Score=148.53  Aligned_cols=131  Identities=14%  Similarity=0.109  Sum_probs=102.5

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ...+|...+.||+|+||.||+|+.. +++.||+|.....      ....|+.++++++||||+++++++...+  ...++
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv  135 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGA--ITCMV  135 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCC--eeEEE
Confidence            3456999999999999999999964 5789999975432      2357999999999999999999887643  33456


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.+++...+..     .+.....++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus       136 ~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  206 (357)
T PHA03209        136 LPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQF  206 (357)
T ss_pred             EEccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccc
Confidence            67777776554432     222344556899999999866      8999999999999999999998763

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.55  E-value=3.8e-15  Score=143.93  Aligned_cols=140  Identities=19%  Similarity=0.203  Sum_probs=108.1

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..++|+..+.||+|+||.||+|.. .+|+.||+|.++...  ......+.+|++++++++|+||+++++++...+....+
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF   84 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence            356799999999999999999996 469999999987543  22234567899999999999999999988764433455


Q ss_pred             eeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .+++++.+++...+..     .+.....++.|+++|++|||+      +++|.|+++++++.++++|||++...
T Consensus        85 lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~  158 (309)
T cd07845          85 LVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTY  158 (309)
T ss_pred             EEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeec
Confidence            6778877654333321     222334456889999988877      79999999999999999999998753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.55  E-value=3e-15  Score=143.36  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=105.9

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|+..+.||+|+||.||+|..+ +++.||+|.+.... ......+.+|++++++++||||+++++++...+  ....++
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   82 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKK--TLTLVF   82 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCC--eEEEEE
Confidence            56888999999999999999964 68999999987543 223355778999999999999999999887643  445678


Q ss_pred             cccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ||+.+++...+...     ......++.|+++||.|||+      +++|.|+++++++.++++|||.++.
T Consensus        83 e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  152 (291)
T cd07844          83 EYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARA  152 (291)
T ss_pred             ecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccc
Confidence            88887665433321     12234445789999999877      7999999999999999999998753

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.55  E-value=8.6e-16  Score=148.15  Aligned_cols=124  Identities=17%  Similarity=0.219  Sum_probs=96.3

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCCc
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASA  445 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~  445 (499)
                      .+-+|+|+-|.||+|++ .++.||||+++..+       ..+|+.+++++|||||.|.|+|... -+..+++++|..|.+
T Consensus       129 LeWlGSGaQGAVF~Grl-~netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkGVCtqs-PcyCIiMEfCa~GqL  199 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRL-HNETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKGVCTQS-PCYCIIMEFCAQGQL  199 (904)
T ss_pred             hhhhccCcccceeeeec-cCceehhHHHhhhh-------hhhHHHHHhccCcceeeEeeeecCC-ceeEEeeeccccccH
Confidence            35699999999999998 45689999885432       3688999999999999999999763 344454555557776


Q ss_pred             cccccccccccccc----cccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          446 SASLVSSLTLSRPA----KGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       446 ~~~l~~~~~~~~~~----~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ...++.........    ..|||.||.|||.      +.|-||||+.-++-|||+|||-+.-+
T Consensus       200 ~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~  262 (904)
T KOG4721|consen  200 YEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKEL  262 (904)
T ss_pred             HHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhh
Confidence            66655443332222    3799999999976      89999999999999999999977644

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.55  E-value=3.9e-15  Score=141.62  Aligned_cols=136  Identities=18%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCC----EEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRM----EVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ..+|+..+.||+|+||+||+|+. .++.    .||+|++.... ....+.+.+|+.+++.++||||+++++++....  .
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~   83 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTST--V   83 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCC--c
Confidence            35688889999999999999984 4454    48999986543 233567889999999999999999999886522  2


Q ss_pred             eeeeeccc-CCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHS-SASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~-~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      . .+++++ .|.+.+.+...     ......++.|+++||+|||+      +++|.||++.+++.++++|||+++.+
T Consensus        84 ~-l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          84 Q-LVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             E-EEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeec
Confidence            3 355555 45544444321     11233446899999999876      89999999999999999999988643

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.55  E-value=4.2e-15  Score=145.18  Aligned_cols=134  Identities=15%  Similarity=0.156  Sum_probs=101.3

Q ss_pred             hcccccccccCCcceEEEEEe----CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcC-CCCCccccceeEEccccc
Q 010856          362 EFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFT  432 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~  432 (499)
                      +|+..+.||+|+||.||+++.    .+++.||+|++.+..    ....+.+.+|++++..+ +||||+++++++...+  
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~--   78 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEA--   78 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCC--
Confidence            478889999999999999884    358899999997532    22345688999999999 5999999998776533  


Q ss_pred             eeeeeecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ...++++|+.|+ +...+...    +.....++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        79 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~  154 (332)
T cd05614          79 KLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKE  154 (332)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCcc
Confidence            344567777554 43333222    22233445789999999876      8999999999999999999998763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-15  Score=151.73  Aligned_cols=138  Identities=22%  Similarity=0.183  Sum_probs=102.5

Q ss_pred             hhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccc-----cce
Q 010856          361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT-----FTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~-----~~~  433 (499)
                      ..|...+.+|+|+||.||+|+ ..+|+.||||.+++.. ...++...+|+++|++++|||||++++.=.+..     ...
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~   92 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLP   92 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccc
Confidence            346677899999999999999 5689999999997644 456788999999999999999999887533321     123


Q ss_pred             eeeeecccCCCccccccccccc-------cccccccccccceeecc------CCCcccEEEee-CC---CeEEEEEEEee
Q 010856          434 CLCLFHHSSASASASLVSSLTL-------SRPAKGGGFRGCVLWHV------GVDFAAFVFVL-EP---GVEVICFVFEI  496 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~~~~-------~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-~~---~~~~~~f~~~~  496 (499)
                      ..++++|.+|++...+..+++-       ...+...++.||.|||+      |+||.||+.-. .|   -.|++|||.++
T Consensus        93 vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen   93 VLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             eEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence            4445566677776666655432       12223567888888854      99999998743 32   46899999997


Q ss_pred             cc
Q 010856          497 LL  498 (499)
Q Consensus       497 ~~  498 (499)
                      -+
T Consensus       173 el  174 (732)
T KOG4250|consen  173 EL  174 (732)
T ss_pred             cC
Confidence            54

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.55  E-value=1.6e-15  Score=155.31  Aligned_cols=141  Identities=15%  Similarity=0.087  Sum_probs=105.1

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc--
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF--  431 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~--  431 (499)
                      .....+|...+.||+|+||+||+|+. .+|+.||+|++....  ......+.+|+.++..++|+||+++++.+...+.  
T Consensus        28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~  107 (496)
T PTZ00283         28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRN  107 (496)
T ss_pred             cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccC
Confidence            34456899999999999999999985 579999999997643  2335668899999999999999998876643211  


Q ss_pred             ----ceeeeeecccCC-Ccccccccc--------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEE
Q 010856          432 ----TVCLCLFHHSSA-SASASLVSS--------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICF  492 (499)
Q Consensus       432 ----~~~~~l~~~~~~-~~~~~l~~~--------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f  492 (499)
                          ....++++|+.+ ++.+.+...        +.....++.|++.||+|||+      ++||.||+++.++.++++||
T Consensus       108 ~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DF  187 (496)
T PTZ00283        108 PENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDF  187 (496)
T ss_pred             cccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEec
Confidence                123456677654 443333211        11223345799999998875      89999999999999999999


Q ss_pred             EEeec
Q 010856          493 VFEIL  497 (499)
Q Consensus       493 ~~~~~  497 (499)
                      |+++.
T Consensus       188 Gls~~  192 (496)
T PTZ00283        188 GFSKM  192 (496)
T ss_pred             ccCee
Confidence            99764

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.55  E-value=4.4e-15  Score=145.59  Aligned_cols=141  Identities=14%  Similarity=0.146  Sum_probs=107.6

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc---
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---  430 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---  430 (499)
                      ....++|+..+.||+|+||.||+|.. .++..||+|++....  ....+.+.+|++++++++||||+++++++...+   
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            34567799999999999999999985 579999999986432  223456889999999999999999999886532   


Q ss_pred             -cceeeeeecccCCCcccccc---ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 -FTVCLCLFHHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 -~~~~~~l~~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ...+..+++++++.+.....   ..+.....++.|+++|++|||+      +++|.|+++++++.++++|||+++.
T Consensus        91 ~~~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~  167 (343)
T cd07880          91 RFHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  167 (343)
T ss_pred             ccceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccccc
Confidence             12345677787655433221   2223344556899999998877      7999999999999999999998764

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.55  E-value=4.7e-15  Score=144.20  Aligned_cols=128  Identities=18%  Similarity=0.154  Sum_probs=94.7

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHH-HHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECE-MMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~-il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+|+.||+|++....   ....+.+.+|.. +++.++||||+++++++...+  ..++++||+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~--~~~lv~e~~   78 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTAD--KLYFVLDYV   78 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCC--EEEEEEcCC
Confidence            3689999999999996 479999999997543   223345566655 567899999999998887633  345567777


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+ +...+...    +.....++.|++.||+|||+      +++|.||++++++.++++|||++.
T Consensus        79 ~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~  144 (323)
T cd05575          79 NGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCK  144 (323)
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCc
Confidence            554 33333222    22233456899999998877      899999999999999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.55  E-value=4.9e-15  Score=139.93  Aligned_cols=135  Identities=21%  Similarity=0.247  Sum_probs=105.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ++|...+.||+|+||.||+|+. .+++.||+|.++.........+.+|+.+++.++||||+++++++...+  ..+.++|
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~--~~~lv~e   86 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRD--KLWICME   86 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCC--EEEEEEe
Confidence            4688889999999999999995 568999999997655444567889999999999999999999887643  3455677


Q ss_pred             ccCCCcccc-ccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASAS-LVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~-l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.+.. +..    .......++.|++.|++|||+      +++|.|++++.++.++++|||.+..
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~  155 (267)
T cd06645          87 FCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQ  155 (267)
T ss_pred             ccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeE
Confidence            776543332 222    222334456889999998876      7999999999999999999998753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.55  E-value=3.4e-15  Score=145.72  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=101.0

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|...+.||+|+||.||+++.+ +++.||+|++.+..   ....+.+.+|+.++..++|+||+++++++...+  ..+++
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv   79 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDEN--NLYLV   79 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC--EEEEE
Confidence            6888999999999999999964 58899999996532   223445888999999999999999998887633  34556


Q ss_pred             eccc-CCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHS-SASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~-~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +||+ +|++...+..     .+...+.++.|++.|++|||+      ++||.|++++.++.++++|||++.
T Consensus        80 ~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~  150 (332)
T cd05623          80 MDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCL  150 (332)
T ss_pred             EeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchhe
Confidence            6666 4555444432     112233445788888887655      899999999999999999999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.55  E-value=7.6e-16  Score=149.83  Aligned_cols=142  Identities=18%  Similarity=0.135  Sum_probs=114.0

Q ss_pred             HHHHHHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          354 LELFRATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       354 ~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      +.|+-...+.++..++|-|.||.||.|.++ ..-.||||.++.+. ...++|..|+.+|+.++|||+|+++|+|..  ..
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLGVCT~--Ep  336 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTH--EP  336 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhhhhcc--CC
Confidence            566666677888999999999999999985 46789999997654 447899999999999999999999999976  33


Q ss_pred             eeeeeeccc-CCCcccccccccc------ccccccccccccceee------ccCCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          433 VCLCLFHHS-SASASASLVSSLT------LSRPAKGGGFRGCVLW------HVGVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       433 ~~~~l~~~~-~~~~~~~l~~~~~------~~~~~~~~i~~gl~yL------H~~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++++-||| .|.+++.++...+      ....+|-||+.||+||      |++.-.-|-|+-.+.-|||+|||++|+.
T Consensus       337 PFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlM  415 (1157)
T KOG4278|consen  337 PFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLM  415 (1157)
T ss_pred             CeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhh
Confidence            555666666 6777777654322      1233468999999875      8888888999988899999999999875

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.55  E-value=3.2e-15  Score=142.54  Aligned_cols=135  Identities=19%  Similarity=0.111  Sum_probs=98.7

Q ss_pred             hhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .+|...+.||+|+||.||+|...      +++.||+|+++.... ...+.+.+|+.+++.++||||+++++++...+.  
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~--   82 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQP--   82 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCc--
Confidence            45777889999999999999852      257899999975432 234678899999999999999999998876432  


Q ss_pred             eeeeecccCCC-ccccccc--------------------cccccccccccccccceeecc------CCCcccEEEeeCCC
Q 010856          434 CLCLFHHSSAS-ASASLVS--------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG  486 (499)
Q Consensus       434 ~~~l~~~~~~~-~~~~l~~--------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~  486 (499)
                      ...++++..++ +...+..                    .......++.|++.||+|+|+      ++||.|+++.+++.
T Consensus        83 ~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~  162 (283)
T cd05091          83 LSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLN  162 (283)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCc
Confidence            33455555433 2222210                    111122345789999999776      89999999999999


Q ss_pred             eEEEEEEEeec
Q 010856          487 VEVICFVFEIL  497 (499)
Q Consensus       487 ~~~~~f~~~~~  497 (499)
                      ++++|||+++.
T Consensus       163 ~kl~Dfg~~~~  173 (283)
T cd05091         163 VKISDLGLFRE  173 (283)
T ss_pred             eEecccccccc
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.55  E-value=4.7e-15  Score=145.53  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=111.8

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEE
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVA  427 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~  427 (499)
                      ...+++....++|...+.||+|+||.||+|.. .+++.||+|++....  ....+.+.+|++++++++||||+++++++.
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~   86 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT   86 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence            34566777889999999999999999999985 578999999997542  223466889999999999999999999875


Q ss_pred             ccc----cceeeeeecccCCCcccccc---ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          428 VIT----FTVCLCLFHHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       428 ~~~----~~~~~~l~~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      ...    ......+++++++.+...+.   ..+.....++.|+++|++|||+      +++|.|+++.+++.++++|||+
T Consensus        87 ~~~~~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~  166 (345)
T cd07877          87 PARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL  166 (345)
T ss_pred             ecccccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccc
Confidence            422    12344566777665432221   1223344456899999998877      7899999999999999999998


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      +..
T Consensus       167 ~~~  169 (345)
T cd07877         167 ARH  169 (345)
T ss_pred             ccc
Confidence            753

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.55  E-value=4.5e-15  Score=143.90  Aligned_cols=135  Identities=18%  Similarity=0.197  Sum_probs=106.6

Q ss_pred             cccccccccCCcceEEEEEeC---CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          363 FSENNLIGKGGFGSVYKARLG---DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      |...+.||+|+||.||+|...   +++.||+|.+....   ....+.+.+|+.++++++||||+++++++...+....++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            677889999999999999963   58899999997643   334567889999999999999999999998753345667


Q ss_pred             eecccCCCccccccc---------cccccccccccccccceeecc------CCCcccEEEee----CCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVS---------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL----EPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~---------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~----~~~~~~~~f~~~~~  497 (499)
                      ++|++.+++...+..         .......++.|++.|++|||+      +++|.|++++.    ++.++++|||++..
T Consensus        82 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~  161 (316)
T cd07842          82 LFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARL  161 (316)
T ss_pred             EEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccc
Confidence            888887765443321         112233456899999999866      89999999988    88999999998764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.54  E-value=4.4e-15  Score=140.65  Aligned_cols=135  Identities=19%  Similarity=0.197  Sum_probs=99.8

Q ss_pred             cccccccccCCcceEEEEEeC----CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc----c
Q 010856          363 FSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF----T  432 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~----~  432 (499)
                      |.+.+.+|+|+||.||+|...    .+..||+|+++...  ....+.+.+|+++++.++||||+++++++...+.    .
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            456789999999999999853    24789999987543  2234678999999999999999999998765332    1


Q ss_pred             eeeeeecccCCC-ccccccc----------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          433 VCLCLFHHSSAS-ASASLVS----------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       433 ~~~~l~~~~~~~-~~~~l~~----------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ..+++++|+.++ +...+..          .+.....++.|++.||+|||+      +++|.|+++++++.++++|||++
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccce
Confidence            234566666544 3222211          111223346899999998877      79999999999999999999998


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      +.
T Consensus       161 ~~  162 (273)
T cd05035         161 KK  162 (273)
T ss_pred             ee
Confidence            64

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.54  E-value=3e-15  Score=143.68  Aligned_cols=135  Identities=15%  Similarity=0.097  Sum_probs=100.6

Q ss_pred             hhcccccccccCCcceEEEEEeCC---------------CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD---------------RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILH  424 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~---------------~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~  424 (499)
                      .+|.+.+.||+|+||.||+|+.+.               ...||+|.+.... ....+.|.+|++++++++||||+++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            468888999999999999987532               2358999987543 223467999999999999999999999


Q ss_pred             eEEccccceeeeeecccCCCccc-cccc----------------cccccccccccccccceeecc------CCCcccEEE
Q 010856          425 GVAVITFTVCLCLFHHSSASASA-SLVS----------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF  481 (499)
Q Consensus       425 ~~~~~~~~~~~~l~~~~~~~~~~-~l~~----------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~  481 (499)
                      ++...+  ...+++|++.++... .+..                .+.....++.|+++|++|||+      +++|.|+++
T Consensus        85 ~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill  162 (295)
T cd05097          85 VCVSDD--PLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLV  162 (295)
T ss_pred             EEcCCC--ccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEE
Confidence            987643  345567777654332 2211                111123345789999998866      899999999


Q ss_pred             eeCCCeEEEEEEEeec
Q 010856          482 VLEPGVEVICFVFEIL  497 (499)
Q Consensus       482 ~~~~~~~~~~f~~~~~  497 (499)
                      ++++.++++|||++..
T Consensus       163 ~~~~~~kl~dfg~~~~  178 (295)
T cd05097         163 GNHYTIKIADFGMSRN  178 (295)
T ss_pred             cCCCcEEecccccccc
Confidence            9999999999998753

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.54  E-value=2.1e-15  Score=143.86  Aligned_cols=134  Identities=16%  Similarity=0.198  Sum_probs=105.6

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|+||.||+|+. .+|+.||+|+++...  ......+.+|++++++++||||+++++++....  ....++
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   78 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDK--KLTLVF   78 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCC--ceEEEE
Confidence            377788999999999999996 478999999996543  223456788999999999999999999887633  445677


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.+++...+..     .+.....++.|+++||+|||+      +++|.|++++.++.++++|||+++.
T Consensus        79 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~  148 (284)
T cd07839          79 EYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARA  148 (284)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhc
Confidence            8887776554332     222344556899999999877      7999999999999999999998764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.54  E-value=4.9e-15  Score=141.16  Aligned_cols=133  Identities=19%  Similarity=0.287  Sum_probs=104.4

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      |+..+.||+|+||.||+|+.. ++..+|+|.+........+.+.+|+++++.++||||+++++++...+  ..+.+++|.
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--~~~~v~e~~   84 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYEN--NLWILIEFC   84 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCC--EEEEEEEec
Confidence            567788999999999999964 68889999997655455677899999999999999999999887633  445567777


Q ss_pred             CCCccccc-cc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          442 SASASASL-VS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       442 ~~~~~~~l-~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++..... ..     .+.....++.|+++||+|||+      +++|.|++++.++.++++|||++..
T Consensus        85 ~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~  152 (282)
T cd06643          85 AGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAK  152 (282)
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccc
Confidence            66554332 11     122334456899999999877      7999999999999999999998753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.54  E-value=4.6e-15  Score=139.62  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=105.2

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|+..+.+|+|+||.||+|...+++.||+|.+.... ...+.+.+|+.++++++|+||+++++++...+  ..+.+++
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   81 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE--PIYIITE   81 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC--CcEEEEe
Confidence            45788999999999999999998788889999986543 23578999999999999999999998876643  3455677


Q ss_pred             ccCC-Ccccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++.+ .+.+.+...      ......++.|+++|++|||+      +++|.|+++++++.++++|||++...
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~  153 (261)
T cd05072          82 YMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVI  153 (261)
T ss_pred             cCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceec
Confidence            7654 443333221      11223345789999998877      78999999999999999999998643

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.54  E-value=5.3e-15  Score=141.17  Aligned_cols=133  Identities=10%  Similarity=0.074  Sum_probs=101.0

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      |+..+.||+|+||+||+|.. .+++.||+|.+.....   .....+.+|++++++++|+||+++.+++...+  ....++
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~   79 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKD--ALCLVL   79 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCC--EEEEEE
Confidence            56678899999999999996 5789999999975431   22345788999999999999999988876643  344566


Q ss_pred             cccCCCccc-cccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASA-SLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~-~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++... .+..      .+.....++.|++.||+|||+      +++|.|+++++++.++++|||++..
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~  151 (285)
T cd05632          80 TIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVK  151 (285)
T ss_pred             EeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCccee
Confidence            666554332 2221      122334456899999998876      8999999999999999999998854

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.54  E-value=5.2e-15  Score=144.06  Aligned_cols=128  Identities=10%  Similarity=0.110  Sum_probs=98.2

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+++.||+|++++..   ....+.+.+|+.++.++ +||||+++++++...+  ..++++||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e~~   78 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTS--RLFLVIEYV   78 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCC--EEEEEEeCC
Confidence            4689999999999996 468899999997643   23356688999999888 6999999998886633  445567777


Q ss_pred             CCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+ +...+..    .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~  144 (327)
T cd05617          79 NGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCK  144 (327)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccce
Confidence            554 3322222    223344556899999998876      899999999999999999999875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.54  E-value=6.8e-15  Score=141.29  Aligned_cols=135  Identities=19%  Similarity=0.201  Sum_probs=107.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .+|+..+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++...+  ..+.+++
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~e   96 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVME   96 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--EEEEeec
Confidence            5688899999999999999995 579999999997665555677899999999999999999999987633  4456778


Q ss_pred             ccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.......    .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        97 ~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~  164 (297)
T cd06656          97 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  164 (297)
T ss_pred             ccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceE
Confidence            876654433221    122334456788999988876      7999999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.54  E-value=3e-15  Score=143.14  Aligned_cols=138  Identities=17%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      ...++|+..+.||+|+||.||+|..+      .+..||+|.++... ......+.+|+.+++.++||||+++++++...+
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   82 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ   82 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            34567999999999999999999742      24579999886543 223456889999999999999999999887643


Q ss_pred             cceeeeeecccC-CCccccccccc--------------cccccccccccccceeecc------CCCcccEEEeeCCCeEE
Q 010856          431 FTVCLCLFHHSS-ASASASLVSSL--------------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEV  489 (499)
Q Consensus       431 ~~~~~~l~~~~~-~~~~~~l~~~~--------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~  489 (499)
                        ..++++||+. |.+.+.+....              .....++.|++.||+|||+      +++|.|+++++++.+++
T Consensus        83 --~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          83 --PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             --CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEE
Confidence              3455677765 44433332211              1123346789999998877      79999999999999999


Q ss_pred             EEEEEeec
Q 010856          490 ICFVFEIL  497 (499)
Q Consensus       490 ~~f~~~~~  497 (499)
                      +|||+++.
T Consensus       161 ~Dfg~~~~  168 (288)
T cd05061         161 GDFGMTRD  168 (288)
T ss_pred             CcCCcccc
Confidence            99998763

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.54  E-value=4.8e-15  Score=139.86  Aligned_cols=137  Identities=18%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|+..+.+|+|+||.||.|.. .++..||+|.+....     ....+.+.+|++++++++||||+++++++...+....
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4688899999999999999996 468999999986432     1224578899999999999999999998765433334


Q ss_pred             eeeecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++++.|+ +.+.+..    .......++.|++.||+|||+      +++|.|+++++++.++++|||.+..
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~  155 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKR  155 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccc
Confidence            4567777554 4333322    122234456889999998877      7999999999999999999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.54  E-value=6e-15  Score=146.81  Aligned_cols=90  Identities=19%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCC-CCCccccceeEE
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIR-HRNLIKILHGVA  427 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~-H~niv~l~~~~~  427 (499)
                      +....++|...+.||+|+||.||+|+.+      .++.||+|+++... ....+.+.+|++++.++. |||||++++++.
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~  111 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT  111 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence            3344456888899999999999999852      34689999997543 233457899999999997 999999999887


Q ss_pred             ccccceeeeeecccC-CCccc
Q 010856          428 VITFTVCLCLFHHSS-ASASA  447 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~-~~~~~  447 (499)
                      ...  ..++++||+. |++.+
T Consensus       112 ~~~--~~~iv~E~~~~g~L~~  130 (401)
T cd05107         112 KGG--PIYIITEYCRYGDLVD  130 (401)
T ss_pred             cCC--CcEEEEeccCCCcHHH
Confidence            633  3344565554 44433

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.54  E-value=4.5e-15  Score=140.36  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=95.5

Q ss_pred             ccccCCcceEEEEEeC---CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCC
Q 010856          368 LIGKGGFGSVYKARLG---DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSA  443 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~  443 (499)
                      .||+|+||+||+|...   ....+|+|.+.... ......+.+|+++++.++||||+++++++...+  ..++++|++.+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~--~~~lv~e~~~~   79 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESI--PYLLVLEFCPL   79 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCC--ceEEEEEeCCC
Confidence            5899999999999743   34578888775443 233456889999999999999999999887633  34556777765


Q ss_pred             Cccc-ccccc---------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          444 SASA-SLVSS---------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       444 ~~~~-~l~~~---------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+. .+...         +.....++.|++.|++|||+      ++||.|+++++++.++++|||+++.
T Consensus        80 g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  149 (269)
T cd05042          80 GDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALE  149 (269)
T ss_pred             CcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccc
Confidence            4333 33221         11223456899999999887      7999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.54  E-value=4.4e-15  Score=141.30  Aligned_cols=136  Identities=18%  Similarity=0.275  Sum_probs=108.4

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|++.+.+|+|+||.||+|.. .++..||+|.+........+.+.+|++++++++||||+++++++...+  ..++++
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   81 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYEN--KLWILI   81 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC--eEEEEe
Confidence            45688899999999999999996 468899999997655455678999999999999999999999887633  445677


Q ss_pred             cccCCCcccccc-c-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLV-S-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~-~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |++.++.+..+. .     .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        82 e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~  152 (280)
T cd06611          82 EFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAK  152 (280)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchh
Confidence            888765444332 1     222344556899999999876      7999999999999999999998653

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.54  E-value=4.5e-15  Score=141.72  Aligned_cols=134  Identities=19%  Similarity=0.206  Sum_probs=106.2

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.||+|+||.||+|..+ +++.||+|++....  ....+.+.+|+++++.++||||+++++++...+  ..+.++
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   79 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKK--RLYLVF   79 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCC--eEEEEE
Confidence            5788899999999999999974 68999999986543  223567889999999999999999999987633  455678


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|+.++....+..     .+.....++.|+++|++|||+      +++|.|+++++++.++++|||++..
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~  149 (286)
T cd07846          80 EFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFART  149 (286)
T ss_pred             ecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeee
Confidence            8887765544321     223344456899999999988      6899999999999999999998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.54  E-value=4.4e-15  Score=138.96  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=98.0

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      +.||+|+||.||+|+. .+++.||+|.+.... ......+.+|++++++++||||+++++++...+  ..++++|++.++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~~~~~   78 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ--PIYIVMELVQGG   78 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC--CeEEEEeeccCC
Confidence            3689999999999996 478999999886443 233567999999999999999999999887643  344566776544


Q ss_pred             -cccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          445 -ASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       445 -~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       +.+.+...     +.....++.|++.||+|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  143 (252)
T cd05084          79 DFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSRE  143 (252)
T ss_pred             cHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcc
Confidence             33333221     12233446899999999876      7899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.54  E-value=6.1e-15  Score=140.73  Aligned_cols=134  Identities=18%  Similarity=0.206  Sum_probs=106.6

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|+||.||+|+.+ +++.||+|++....  ....+.+.+|++++++++||||+++++++...+  ....++
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~v~   79 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKR--KLHLVF   79 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCC--EEEEEE
Confidence            5888899999999999999964 68999999986543  223456889999999999999999999887633  445678


Q ss_pred             cccCCCcccccc-----ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLV-----SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~-----~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++....+.     ..+.....++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (286)
T cd07847          80 EYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARI  149 (286)
T ss_pred             eccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECcccccee
Confidence            888776554432     1223345556899999999987      7999999999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.54  E-value=7e-15  Score=143.12  Aligned_cols=128  Identities=18%  Similarity=0.144  Sum_probs=95.3

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHH-HHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECE-MMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~-il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+|+.||+|++.+..   ....+.+.+|.. +++.++||||+++++++...+  ..++++||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~--~~~lv~e~~   78 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTE--KLYFVLDFV   78 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCC--EEEEEEcCC
Confidence            4689999999999995 579999999997542   223345666665 467899999999998887633  345567777


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+ +...+...    +.....++.|+++||+|||+      +++|.||++++++.++++|||++.
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~  144 (325)
T cd05604          79 NGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCK  144 (325)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcc
Confidence            554 33333222    22234456899999998887      899999999999999999999865

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.54  E-value=6.5e-15  Score=143.27  Aligned_cols=133  Identities=14%  Similarity=0.101  Sum_probs=99.9

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCC-CccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHR-NLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~-niv~l~~~~~~~~~~~~~~  436 (499)
                      +|+..+.||+|+||.||+|+.. +++.||+|++.+..   ....+.+..|++++..++|+ +|+++++++...+  ..++
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~l   78 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--RLYF   78 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCC--EEEE
Confidence            4778899999999999999964 68899999997642   23456788999999999765 5777777776533  3445


Q ss_pred             eecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          437 LFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++||+.|+ +...+..    .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++.
T Consensus        79 v~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~  149 (324)
T cd05587          79 VMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCK  149 (324)
T ss_pred             EEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcce
Confidence            67776544 4333322    222334446899999998877      799999999999999999999875

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=2.3e-14  Score=149.79  Aligned_cols=118  Identities=35%  Similarity=0.611  Sum_probs=105.6

Q ss_pred             CccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEcc
Q 010856          175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLS  254 (499)
Q Consensus       175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  254 (499)
                      .++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCCC--CCCccccccCCCcCCCCCCCCCCCCCC
Q 010856          255 FNKLEGEIPRGGS--FGNFSAESFEGNELLCGSPNLQVPPCK  294 (499)
Q Consensus       255 ~N~l~~~~~~~~~--~~~l~~~~l~~N~~~c~~~~~~~~~~~  294 (499)
                      +|++++.+|....  ...+..+++.+|+.+|+.+.  .+.|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~--l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG--LRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC--CCCCc
Confidence            9999999987532  23456788999999998764  45664

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.54  E-value=5.1e-15  Score=141.22  Aligned_cols=137  Identities=17%  Similarity=0.134  Sum_probs=103.6

Q ss_pred             hcccccccccCCcceEEEEEe-----CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      -|+..+.||+|+||.||.|++     .++..||+|.++... ....+.+.+|+++++.++||||+++++++...+....+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            367788999999999999973     357889999987543 33356799999999999999999999988764333344


Q ss_pred             eeecccCCCccc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++||+.|+.+. .+..     .+.....++.|++.||+|||+      +++|.|+++..++.++++|||+++.+
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI  159 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCcccccc
Confidence            567777555433 2221     122233445789999998876      89999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.54  E-value=4.5e-15  Score=140.59  Aligned_cols=140  Identities=19%  Similarity=0.221  Sum_probs=107.2

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEcccc----
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITF----  431 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~----  431 (499)
                      .+.+.|+..+.+|+|+||.||+|.. .+++.||+|++.... .....+.+|+.+++++ +||||+++++++...+.    
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            3556788889999999999999996 468899999997543 3446788999999998 79999999999865321    


Q ss_pred             ceeeeeecccCCCcccc-ccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          432 TVCLCLFHHSSASASAS-LVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~-l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ...+.++|++.++.... +..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||+++.+
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~  161 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  161 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceec
Confidence            23456777776643333 222      112233456899999999988      68999999999999999999998653

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.54  E-value=6e-15  Score=142.85  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=96.6

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhc-CCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKN-IRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~-l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+++.||+|+++...   ....+.+..|.+++.. .+||||+++++++...+  ..++++||+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~--~~~lv~ey~   78 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKE--NLFFVMEYL   78 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCC--EEEEEEeCC
Confidence            3689999999999996 468899999997642   2334567788888876 59999999999887644  345567776


Q ss_pred             CC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .| ++...+..    .......++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~  144 (316)
T cd05619          79 NGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCK  144 (316)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcce
Confidence            54 44333322    122234456899999998876      899999999999999999999865

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.54  E-value=6.7e-15  Score=140.98  Aligned_cols=134  Identities=16%  Similarity=0.228  Sum_probs=106.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +.|+..+.+|+|+||.||+|+. .+++.||+|.+........+.+.+|+++++.++||||+++++++....  ....+++
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   89 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDG--KLWIMIE   89 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC--eEEEEEe
Confidence            5688889999999999999996 468999999997665555678899999999999999999999876532  4455777


Q ss_pred             ccCCCcccccc------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          440 HSSASASASLV------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       440 ~~~~~~~~~l~------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++.|+....+.      ..+.....++.|++.|++|||+      +++|.|++++.++.++++|||++.
T Consensus        90 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  158 (292)
T cd06644          90 FCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSA  158 (292)
T ss_pred             cCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccce
Confidence            77666543221      1223334456889999988777      799999999989999999999864

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.54  E-value=9.2e-15  Score=140.47  Aligned_cols=134  Identities=16%  Similarity=0.174  Sum_probs=104.6

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc-----cHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR-----AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~-----~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      +|+..+.||+|+||.||+|.. .+++.||+|.+......     ....+..|++++++++|+||+++++++...+  ..+
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~   78 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKS--NIN   78 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCC--EEE
Confidence            367788999999999999996 46899999999765422     2355778999999999999999999987733  345


Q ss_pred             eeecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.+++...+...     +.....++.|+++||+|||+      +++|.|++++.++.++++|||++..
T Consensus        79 lv~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~  151 (298)
T cd07841          79 LVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARS  151 (298)
T ss_pred             EEEcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeee
Confidence            57777766554444322     12234456899999999866      8999999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.54  E-value=8e-15  Score=137.92  Aligned_cols=134  Identities=16%  Similarity=0.193  Sum_probs=103.0

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|...++||+|+||.||+|..++++.||+|.+.... ...+++.+|+.++++++||||+++++++.. +  ....+++
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~--~~~~v~e   80 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAVVTQ-E--PIYIITE   80 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEEEEEcc-C--CcEEEEE
Confidence            35688899999999999999998888999999987544 335679999999999999999999987643 2  2345666


Q ss_pred             ccC-CCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSS-ASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~-~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++. +++.+.+..      .+.....++.|++.||+|||+      +++|.|+++++++.++++|||.+..
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  151 (260)
T cd05067          81 YMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARL  151 (260)
T ss_pred             cCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceee
Confidence            664 444333322      112223345788899988876      7999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.53  E-value=5.6e-15  Score=143.27  Aligned_cols=128  Identities=17%  Similarity=0.154  Sum_probs=97.7

Q ss_pred             cccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+.. +++.||+|++++..   ....+.+.+|++++..+ +||||+++++++...+  ..+++++|+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~--~~~lv~e~~   78 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKD--RLFFVMEYV   78 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--EEEEEEcCC
Confidence            46899999999999964 68899999997643   23356678899999887 7999999999887643  445677777


Q ss_pred             CCCcc-cccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SASAS-ASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~~~-~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+.+ ..+...    +.....++.|++.||+|||+      +++|.|++++.++.++++|||+++
T Consensus        79 ~~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  144 (318)
T cd05570          79 NGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCK  144 (318)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCe
Confidence            55433 332222    22233446799999999877      899999999999999999999864

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.53  E-value=7.8e-15  Score=139.96  Aligned_cols=133  Identities=11%  Similarity=0.078  Sum_probs=101.2

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      |+..+.||+|+||.||+|.. .+++.||+|.+.....   ...+.+.+|+.++++++|++|+++++.+...+  ....++
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--~~~lv~   79 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKD--ALCLVL   79 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCC--EEEEEE
Confidence            66778899999999999996 4789999999875432   22345778999999999999999998887643  345567


Q ss_pred             cccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.|+ +...+..      .......++.|++.||+|||+      +++|.|+++++++.++++|||++..
T Consensus        80 e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~  151 (285)
T cd05630          80 TLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVH  151 (285)
T ss_pred             EecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceee
Confidence            777554 4333321      112233445789999998877      7999999999999999999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.53  E-value=5.4e-15  Score=144.64  Aligned_cols=138  Identities=15%  Similarity=0.154  Sum_probs=107.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccc---cee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF---TVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~---~~~  434 (499)
                      .++|...+.||+|+||.||+|+. .+|+.||+|++.... ......+.+|+.++++++||||+++++++....+   ...
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            46799999999999999999985 578999999986433 2345678899999999999999999998765322   234


Q ss_pred             eeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+++++.+++...+..   .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        84 ~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  155 (336)
T cd07849          84 YIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARI  155 (336)
T ss_pred             EEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceee
Confidence            56788888765443322   222334456789999988876      7999999999999999999998764

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.53  E-value=6.5e-15  Score=141.77  Aligned_cols=140  Identities=21%  Similarity=0.209  Sum_probs=109.5

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----  430 (499)
                      ...++|+..+.+|+|+||.||+|..+ +|+.||+|.++...  ......+.+|++++++++||||+++++++...+    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            35577999999999999999999964 68999999997543  233456789999999999999999999886532    


Q ss_pred             ----cceeeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          431 ----FTVCLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       431 ----~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                          ......+++++.+++...+..     .+.....++.|++.||+|||+      +++|.|+++++++.++++|||++
T Consensus        84 ~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~  163 (302)
T cd07864          84 FKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLA  163 (302)
T ss_pred             ccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccccc
Confidence                124556788888765444332     223344556899999999886      79999999999999999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       164 ~~  165 (302)
T cd07864         164 RL  165 (302)
T ss_pred             cc
Confidence            64

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.53  E-value=6.5e-15  Score=141.18  Aligned_cols=138  Identities=14%  Similarity=0.125  Sum_probs=108.4

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .++|+..+.||+|+||.||+|..+ +++.+|+|.++...  ......+.+|+.++++++||||+++++++...+....+.
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~l   83 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYM   83 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEE
Confidence            357888899999999999999964 68899999997543  222346788999999999999999999887653345566


Q ss_pred             eecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.+++...+..     .+.....++.|++.||+|||+      +++|.||++++++.++++|||.+..
T Consensus        84 v~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~  155 (293)
T cd07843          84 VMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLARE  155 (293)
T ss_pred             EehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceee
Confidence            788887755433322     222344556899999999987      7999999999999999999998764

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.53  E-value=8.6e-15  Score=140.12  Aligned_cols=134  Identities=16%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|+..+.||+|+||.||++.. .+++.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..+.+
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v   79 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDS--NLYLV   79 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCC--eEEEE
Confidence            688889999999999999996 468999999997543   234567899999999999999999999887633  44557


Q ss_pred             eccc-CCCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHS-SASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~-~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++ ++.+.+.+....    .....++.|++.||+|||+      +++|.||++++++.++++|||++..
T Consensus        80 ~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~  150 (290)
T cd05580          80 MEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKR  150 (290)
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccc
Confidence            7787 444433333222    2233345789999998876      8999999999999999999998764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.53  E-value=6.2e-15  Score=140.47  Aligned_cols=134  Identities=11%  Similarity=0.074  Sum_probs=101.6

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHH-HhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEM-MKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~i-l~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.||+|+||.||+|+. .+|+.||+|+++... .....++..|+.+ ++..+||||+++++++....  ....++
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~--~~~lv~   79 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREG--DVWICM   79 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCC--cEEEEh
Confidence            688889999999999999996 479999999997653 2233456667765 66679999999999987633  345577


Q ss_pred             cccCCCccccccc--------cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS--------SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.|.+...+..        .+.....++.|++.|++|||+       +++|.|++++.++.++++|||.+..
T Consensus        80 e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~  153 (283)
T cd06617          80 EVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGY  153 (283)
T ss_pred             hhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence            8887764333321        122333556899999988886       5899999999999999999998753

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.53  E-value=4.9e-15  Score=141.30  Aligned_cols=133  Identities=20%  Similarity=0.251  Sum_probs=103.9

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.||+|+||.||+|+. .+++.||+|.+....  ....+.+.+|++++++++||||+++++++...+  ..+.++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--KLYLVF   78 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCC--cEEEEe
Confidence            477889999999999999996 478999999986543  233467899999999999999999999887633  445577


Q ss_pred             cccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++.+++...+..      .+.....++.|+++|++|||+      +++|.|+++++++.++++|||++.
T Consensus        79 e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~  148 (284)
T cd07860          79 EFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR  148 (284)
T ss_pred             eccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchh
Confidence            7777654433322      122334456889999999866      799999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.53  E-value=4.9e-15  Score=140.05  Aligned_cols=139  Identities=19%  Similarity=0.169  Sum_probs=105.0

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      +.++.++.....+|+|+||.||+|.. .++..||+|.+........+.+.+|++++++++|+||+++++++...+  ..+
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~   81 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENG--FFK   81 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCC--EEE
Confidence            34555666667899999999999995 468899999987665555678999999999999999999999887643  345


Q ss_pred             eeecccCCC-cccccccc-------ccccccccccccccceeecc------CCCcccEEEee-CCCeEEEEEEEeec
Q 010856          436 CLFHHSSAS-ASASLVSS-------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-EPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~~-------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-~~~~~~~~f~~~~~  497 (499)
                      ++++++.++ +...+...       ......++.|+++|++|||+      +++|.|++++. ++.++++|||....
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~  158 (268)
T cd06624          82 IFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKR  158 (268)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhhee
Confidence            567777554 43333321       11122345789999998877      79999999975 56899999998753

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.3e-15  Score=134.26  Aligned_cols=137  Identities=16%  Similarity=0.196  Sum_probs=107.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--------ccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--------RAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      -..|...+.+|.|..++|.++.. ++|..+|+|++.....        ...+.-.+|+.|++++ -||+|+.+.++|...
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            35678889999999999999985 5789999999965431        1245567899999997 699999999999774


Q ss_pred             ccceeeeeeccc-CCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          430 TFTVCLCLFHHS-SASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       430 ~~~~~~~l~~~~-~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .  ..+.+++.| .|++++.+..    ++...+.+.+|+.+|++|||.      +.||+|||.+++-++++.||||+--|
T Consensus        96 s--F~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l  173 (411)
T KOG0599|consen   96 A--FVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQL  173 (411)
T ss_pred             c--hhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeecc
Confidence            3  334466666 5666666543    334455666889999999876      89999999999999999999998643

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.53  E-value=3.4e-15  Score=141.92  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=102.3

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      ...++|+..+.+|+|+||.||+|...      ++..||+|.+.... .....++.+|+.+++.++||||+++++++...+
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~   82 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   82 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            34577999999999999999998742      35679999986433 233567899999999999999999999886533


Q ss_pred             cceeeeeecccCCC-ccccccccc--------------cccccccccccccceeecc------CCCcccEEEeeCCCeEE
Q 010856          431 FTVCLCLFHHSSAS-ASASLVSSL--------------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEV  489 (499)
Q Consensus       431 ~~~~~~l~~~~~~~-~~~~l~~~~--------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~  489 (499)
                        ...+++|++.++ +.+.+....              .....++.|++.|++|||+      +++|.|+++++++.+++
T Consensus        83 --~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          83 --PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             --CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEE
Confidence              345567776554 332222111              1123345789999998877      89999999999999999


Q ss_pred             EEEEEee
Q 010856          490 ICFVFEI  496 (499)
Q Consensus       490 ~~f~~~~  496 (499)
                      +|||++.
T Consensus       161 ~dfg~~~  167 (277)
T cd05062         161 GDFGMTR  167 (277)
T ss_pred             CCCCCcc
Confidence            9999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.53  E-value=9e-15  Score=138.09  Aligned_cols=136  Identities=15%  Similarity=0.216  Sum_probs=103.5

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      +|+..+.+|+|+||.||+|.. .++..||+|++....     ....+.+.+|+.++++++||||+++++++.........
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            688889999999999999996 468999999986542     12345688999999999999999999987653333444


Q ss_pred             eeecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++++..++ +...+..    .+.....++.|++.||+|||+      +++|.||++++++.++++|||+++.
T Consensus        83 l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~  155 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (266)
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccc
Confidence            566777554 3333322    122233456889999998887      7899999999889999999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.53  E-value=1.1e-14  Score=137.57  Aligned_cols=135  Identities=19%  Similarity=0.117  Sum_probs=104.7

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|+..+.+|+|+||.||+|... +|+.||+|.++...   ....+.+.+|++++++++|+||+++++++...+  ..+.
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~--~~~l   79 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENN--ELNI   79 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCC--eEEE
Confidence            57889999999999999999964 79999999986432   233567999999999999999999999887643  3455


Q ss_pred             eecccCCCccc-cccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASA-SLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~-~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.++.+. .+..        .......++.|++.|++|||+      +++|.|++++.++.++++|||+++.
T Consensus        80 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~  155 (267)
T cd08224          80 VLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRF  155 (267)
T ss_pred             EEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeee
Confidence            77777654333 2211        112233445788999988876      7999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.53  E-value=7.8e-15  Score=139.56  Aligned_cols=134  Identities=17%  Similarity=0.150  Sum_probs=98.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCC----EEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRM----EVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~----~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|...+.||+|+||+||+|.. .+++    .+|+|.+..... ....++..|+.++++++||||+++++++..  ....
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~--~~~~   84 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG--ASLQ   84 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC--CccE
Confidence            4677889999999999999995 3454    467777754322 224567888889999999999999998754  2233


Q ss_pred             eeeeccc-CCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHS-SASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~-~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      + +++++ +|.+.+.+...     +.....++.|++.||+|||+      +++|.|++++.++.++++|||.++.
T Consensus        85 ~-i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~  158 (279)
T cd05111          85 L-VTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADL  158 (279)
T ss_pred             E-EEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCcccee
Confidence            3 44554 55554444321     22334556899999999887      7999999999999999999998864

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.53  E-value=6.8e-15  Score=141.23  Aligned_cols=136  Identities=15%  Similarity=0.112  Sum_probs=102.0

Q ss_pred             hhhcccccccccCCcceEEEEEeCC-----------------CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGD-----------------RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIK  421 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~  421 (499)
                      ..+|.+.+.||+|+||.||+|....                 +..||+|.+.... ....+.+.+|++++++++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            3568889999999999999987431                 2468999987554 234567899999999999999999


Q ss_pred             cceeEEccccceeeeeecccCCC-cccccccc---------------ccccccccccccccceeecc------CCCcccE
Q 010856          422 ILHGVAVITFTVCLCLFHHSSAS-ASASLVSS---------------LTLSRPAKGGGFRGCVLWHV------GVDFAAF  479 (499)
Q Consensus       422 l~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~---------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~  479 (499)
                      +++++...+  ..+.+++++.++ +...+...               +.....++.|++.||+|||+      +++|.|+
T Consensus        84 ~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Ni  161 (296)
T cd05051          84 LLGVCTVDP--PLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNC  161 (296)
T ss_pred             EEEEEecCC--CcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhce
Confidence            999887643  344566666544 33222211               11223345789999998877      8999999


Q ss_pred             EEeeCCCeEEEEEEEeec
Q 010856          480 VFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       480 l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.++++|||+++.
T Consensus       162 li~~~~~~~l~dfg~~~~  179 (296)
T cd05051         162 LVGKNYTIKIADFGMSRN  179 (296)
T ss_pred             eecCCCceEEccccceee
Confidence            999999999999998764

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.53  E-value=8.5e-15  Score=137.39  Aligned_cols=134  Identities=22%  Similarity=0.176  Sum_probs=104.6

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ..+|+..+.+|+|+||.||+|.. .|+.||+|.+..... ..+++.+|+.++++++|+||+++++++...  ...+.+++
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~~v~e   80 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQG--NPLYIVTE   80 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCC--CCeEEEEE
Confidence            35688889999999999999986 478899999975543 467899999999999999999999988762  23445677


Q ss_pred             ccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+ .+.+.+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~  151 (256)
T cd05039          81 YMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKE  151 (256)
T ss_pred             ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccc
Confidence            7754 44333322      222344556889999998877      7999999999999999999998753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.53  E-value=1.5e-15  Score=142.71  Aligned_cols=133  Identities=20%  Similarity=0.205  Sum_probs=102.7

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCcc--HHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRA--FESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~--~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      |+..+.||+|+||+||+++.. +++.||+|++.......  .....+|++++++++||||+++++++...+  ...++++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--~~~~v~~   78 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDN--YLYIVME   78 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESS--EEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccc--ccccccc
Confidence            667889999999999999964 57799999998765322  233466999999999999999999887733  3345677


Q ss_pred             ccCC-Ccccccc----ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSA-SASASLV----SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~-~~~~~l~----~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+ .+...+.    ........++.|+++||+|||+      +++|.||+++.++.++++|||.+..
T Consensus        79 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~  147 (260)
T PF00069_consen   79 YCPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVK  147 (260)
T ss_dssp             EETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7766 5444443    1223344556899999998876      8999999999999999999998753

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.53  E-value=9.2e-15  Score=140.30  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=106.6

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .+|+..+.+|+|+||.||+|.. .+++.||+|.+........+.+.+|+++++.++||||+++++++...+  ..+++++
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~--~~~lv~e   97 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVME   97 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC--EEEEeec
Confidence            4688889999999999999995 578899999998766555678999999999999999999999887633  4556778


Q ss_pred             ccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+.|+.+..+..    .......++.|++.|++|||+      +++|.|++++.++.++++|||+...
T Consensus        98 ~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~  165 (296)
T cd06654          98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  165 (296)
T ss_pred             ccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchh
Confidence            876554433221    122233456789999988866      8999999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.53  E-value=5.5e-15  Score=140.69  Aligned_cols=137  Identities=18%  Similarity=0.099  Sum_probs=103.3

Q ss_pred             hhhcccccccccCCcceEEEEEeCC-----CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGD-----RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .++|...+.||+|+||.||+|....     +..||+|.+.... ....+.+.+|+.++++++||||+++++++..... .
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-~   83 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGE-P   83 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC-C
Confidence            4678889999999999999999644     6789999986543 2345678899999999999999999998876332 3


Q ss_pred             eeeeecccCC-Ccccccccc------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          434 CLCLFHHSSA-SASASLVSS------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~~------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      .+.+++++.+ .+...+...            +.....++.|++.||+|||+      +++|.|+++.+++.++++|||+
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~  163 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNAL  163 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCC
Confidence            3445666643 333332211            11223446799999998876      7899999999999999999999


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      ++.
T Consensus       164 ~~~  166 (280)
T cd05043         164 SRD  166 (280)
T ss_pred             ccc
Confidence            864

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.53  E-value=7.2e-15  Score=137.92  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=102.9

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .+|+..+.+|+|+||.||+|..+++..+|+|.+.... ...+.+.+|++++++++||||+++++++...+  ..+.++++
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e~   80 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA-MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQR--PIFIVTEY   80 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC--ceEEEEec
Confidence            3577889999999999999998777789999986543 23457889999999999999999998876543  34556777


Q ss_pred             cCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          441 SSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       441 ~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +.|+ +.+.+..     .+.....++.|++.|++|||+      +++|.|+++++++.++++|||+++
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~  148 (256)
T cd05059          81 MANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLAR  148 (256)
T ss_pred             CCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccce
Confidence            7554 4333322     122234456889999998876      799999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.53  E-value=2.1e-15  Score=141.82  Aligned_cols=132  Identities=19%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             cccccccCCcceEEEEEeC-----CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          365 ENNLIGKGGFGSVYKARLG-----DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       365 ~~~~lg~G~~g~v~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..+.||+|.||.||+|.+.     .+..|+||.++.... ...+.|.+|++.+++++||||++++|++...+  ...+++
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~--~~~lv~   80 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENE--PLFLVM   80 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSS--SEEEEE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccc--cccccc
Confidence            4578999999999999964     257899999965432 34688999999999999999999999998532  345567


Q ss_pred             cccC-CCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSS-ASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~-~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |++. |.+.+.+...      ......++.|+++||+|||+      ++.|.|+++++++.+|++|||+....
T Consensus        81 e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~  153 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPI  153 (259)
T ss_dssp             E--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7775 4454444332      22344557899999999887      78899999999999999999987643

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.53  E-value=1.1e-14  Score=137.18  Aligned_cols=134  Identities=17%  Similarity=0.234  Sum_probs=104.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-----ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-----RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ++|...+.+|+|++|.||.|.. .+++.||+|.+.....     ...+.+.+|++++++++||||+++++++...+  ..
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~   79 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE--TL   79 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC--eE
Confidence            4688899999999999999985 4689999999865431     12456889999999999999999999987644  44


Q ss_pred             eeeecccCCCccc-cccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          435 LCLFHHSSASASA-SLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       435 ~~l~~~~~~~~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ..+++++.|+... .+..    .......++.|++.|++|||+      +++|.||+++.++.++++|||++.
T Consensus        80 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~  152 (263)
T cd06625          80 SIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASK  152 (263)
T ss_pred             EEEEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccce
Confidence            5577777655333 2222    122334556889999998876      799999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.53  E-value=5.9e-15  Score=141.29  Aligned_cols=146  Identities=20%  Similarity=0.225  Sum_probs=112.3

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      ++++++..++++|...+.+|+|+||.||+|.. .+++.+|+|++.... ...+.+.+|+.++.++ +|||++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            45566667788999999999999999999996 578999999986543 2346688999999998 89999999999875


Q ss_pred             ccc---ceeeeeecccCCCccccc-c--------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEE
Q 010856          429 ITF---TVCLCLFHHSSASASASL-V--------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       429 ~~~---~~~~~l~~~~~~~~~~~l-~--------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~  490 (499)
                      .+.   ...+.+++|+.|+.+..+ .        ..+.....++.|++.||+|||+      +++|.|++++++++++++
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~  170 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLV  170 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEe
Confidence            432   234567777766543322 1        1222334456899999999887      799999999999999999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||+.+.
T Consensus       171 dfg~~~~  177 (291)
T cd06639         171 DFGVSAQ  177 (291)
T ss_pred             ecccchh
Confidence            9998764

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.53  E-value=6.4e-15  Score=141.41  Aligned_cols=135  Identities=14%  Similarity=0.098  Sum_probs=100.9

Q ss_pred             hhcccccccccCCcceEEEEEeC-----------------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCcccc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-----------------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKI  422 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-----------------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l  422 (499)
                      ++|+..+.||+|+||.||+++..                 ++..||+|++.... ....+++.+|+++++.++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            46888999999999999998532                 23468999987543 2345679999999999999999999


Q ss_pred             ceeEEccccceeeeeecccCC-Cccccccccc---------------cccccccccccccceeecc------CCCcccEE
Q 010856          423 LHGVAVITFTVCLCLFHHSSA-SASASLVSSL---------------TLSRPAKGGGFRGCVLWHV------GVDFAAFV  480 (499)
Q Consensus       423 ~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~---------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l  480 (499)
                      ++++...+  ...++++++.+ ++...+....               .....++.|++.|++|||+      +++|.|++
T Consensus        85 ~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nil  162 (296)
T cd05095          85 LAVCITSD--PLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCL  162 (296)
T ss_pred             EEEEecCC--ccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEE
Confidence            99887644  33456776654 4433332211               1123345788898888776      79999999


Q ss_pred             EeeCCCeEEEEEEEeec
Q 010856          481 FVLEPGVEVICFVFEIL  497 (499)
Q Consensus       481 ~~~~~~~~~~~f~~~~~  497 (499)
                      +.+++.++++|||++..
T Consensus       163 i~~~~~~~l~dfg~~~~  179 (296)
T cd05095         163 VGKNYTIKIADFGMSRN  179 (296)
T ss_pred             EcCCCCEEeccCccccc
Confidence            99999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.53  E-value=7.1e-15  Score=143.03  Aligned_cols=128  Identities=17%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHH-HHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECE-MMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~-il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+++.||+|++....   ......+.+|.. +++.++||||+++++++...+  ..++++|++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~--~~~lv~e~~   78 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD--KLYFVLDYI   78 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCC--eEEEEEeCC
Confidence            3689999999999996 468899999997543   122334555554 567899999999998887643  345567777


Q ss_pred             CCC-ccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+ +...+....    ...+.++.|+++||+|||+      ++||.||+++.++.++++|||++.
T Consensus        79 ~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~  144 (325)
T cd05602          79 NGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCK  144 (325)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCc
Confidence            554 333332221    2233446889999998876      899999999999999999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.52  E-value=7e-15  Score=140.57  Aligned_cols=134  Identities=18%  Similarity=0.179  Sum_probs=102.3

Q ss_pred             hhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|...+.+|+|+||+||++..      .++..+|+|.+........+.+.+|++++++++||||+++++++...+  ..
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   82 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD--PL   82 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--cc
Confidence            4688889999999999999974      234568999987655445677999999999999999999999887633  34


Q ss_pred             eeeecccCCCcc-ccccc-----------------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEE
Q 010856          435 LCLFHHSSASAS-ASLVS-----------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       435 ~~l~~~~~~~~~-~~l~~-----------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~  490 (499)
                      +.+++++.++.+ +.+..                 .+.....++.|++.||+|||+      +++|.|+++++++.++++
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~  162 (288)
T cd05093          83 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIG  162 (288)
T ss_pred             EEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEec
Confidence            556777754433 22221                 112233445789999998877      799999999999999999


Q ss_pred             EEEEee
Q 010856          491 CFVFEI  496 (499)
Q Consensus       491 ~f~~~~  496 (499)
                      |||++.
T Consensus       163 dfg~~~  168 (288)
T cd05093         163 DFGMSR  168 (288)
T ss_pred             cCCccc
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.52  E-value=1.1e-14  Score=138.90  Aligned_cols=138  Identities=17%  Similarity=0.137  Sum_probs=104.6

Q ss_pred             hhcccccccccCCcceEEEEEeC-----CCCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-----DRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      +.|+..+.+|+|+||.||+|+..     ++..||+|++...... ..+.|.+|+++++.++||||+++++++........
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            35677789999999999999852     3689999999765432 46789999999999999999999988765333344


Q ss_pred             eeeecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ..+++++.++ +.+.+..     .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++...
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVL  159 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccccc
Confidence            5567777544 3333321     122234456888999998877      89999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.52  E-value=8.7e-15  Score=142.03  Aligned_cols=128  Identities=17%  Similarity=0.147  Sum_probs=97.1

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|+. .+++.||+|++.+..   ....+.+.+|++++... +||||+++++++...+  ..++++||+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~--~~~iv~Ey~   78 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPD--RLFFVMEFV   78 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCC--EEEEEEcCC
Confidence            3689999999999996 468999999997542   23456678899998876 7999999999887643  445577777


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+ +...+...    ......++.|++.||+|||+      +++|.||+++.++.++++|||++.
T Consensus        79 ~~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~  144 (320)
T cd05590          79 NGGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCK  144 (320)
T ss_pred             CCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCe
Confidence            654 33333222    22233446889999998876      899999999999999999999865

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.52  E-value=5.8e-15  Score=139.44  Aligned_cols=135  Identities=17%  Similarity=0.123  Sum_probs=103.6

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|...+.||+|+||.||+|+. .+++.+|+|.+....   ....+++.+|+++++.++||||+++++++...+  ..+.
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~   79 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN--ELNI   79 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCC--eEEE
Confidence            4688889999999999999995 578999999886533   233467899999999999999999999887633  3445


Q ss_pred             eecccCCCcccc-ccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASAS-LVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~-l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.|+.+.. +..        .+.....++.|++.|++|||+      +++|.|++++.++.++++|||++..
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~  155 (267)
T cd08229          80 VLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRF  155 (267)
T ss_pred             EEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhc
Confidence            677776543332 211        112223445789999999987      7999999999999999999998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.52  E-value=1.5e-14  Score=138.14  Aligned_cols=135  Identities=17%  Similarity=0.178  Sum_probs=106.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|+.++++++||||+++++++...+  ..+.++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~~v~   78 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGS--GFVLVM   78 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCC--eeEEEe
Confidence            477889999999999999996 478999999997654  233567999999999999999999999887633  445677


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++++++...+..     .+.....++.|+++||+|||+      +++|.|+++++++.++++|||++..+
T Consensus        79 e~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~  149 (286)
T cd07832          79 EYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLF  149 (286)
T ss_pred             cccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccc
Confidence            7776665443322     222344556889999998877      78999999999999999999987643

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.52  E-value=9.9e-15  Score=141.39  Aligned_cols=128  Identities=15%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             cccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhc-CCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKN-IRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~-l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||.||+|+.+ +|+.||+|+++...   ....+.+..|.+++.. .+||||+++++++...+  ..++++||+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~lv~E~~   78 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKE--HLFFVMEFL   78 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCC--EEEEEECCC
Confidence            46899999999999964 68999999997643   2334567788888875 59999999999887633  445567777


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+ +...+...    ......++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~  144 (316)
T cd05620          79 NGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCK  144 (316)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCe
Confidence            554 33333222    22233445799999998876      899999999999999999999865

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.52  E-value=1.1e-14  Score=137.12  Aligned_cols=134  Identities=19%  Similarity=0.179  Sum_probs=102.8

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .+.|...+.+|+|+||.||+|+..+...||+|++.... ...+.+.+|++++++++||||+++++++.. + . .+.+++
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~-~-~~lv~e   80 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E-P-IYIVTE   80 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHHHhCCCCCcceEEEEECC-C-C-cEEEEE
Confidence            35688999999999999999997666679999997543 234678999999999999999999987643 2 2 345777


Q ss_pred             ccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++ +.+.+..      .+.....++.|+++||+|+|+      +++|.|+++.+++.++++|||.++.
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~  151 (262)
T cd05071          81 YMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL  151 (262)
T ss_pred             cCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceee
Confidence            77654 3333322      112233446899999999887      7999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.52  E-value=8.2e-15  Score=143.44  Aligned_cols=139  Identities=15%  Similarity=0.116  Sum_probs=108.6

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcC-CCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..++|+..+.||+|+||.||+|... +++.+|+|++....  ......+.+|+.+++++ +||||+++++++...+....
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            3467888999999999999999964 68899999985432  23345678899999999 99999999998876544455


Q ss_pred             eeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++++.+++...+..   .+.....++.|++.||+|||+      +++|.|++++.++.++++|||.+..
T Consensus        85 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~  156 (337)
T cd07852          85 YLVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARS  156 (337)
T ss_pred             EEEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhc
Confidence            66888887765444322   222233456899999998876      7999999999999999999998764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.52  E-value=9.3e-15  Score=143.95  Aligned_cols=140  Identities=16%  Similarity=0.097  Sum_probs=108.7

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----c
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----F  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~  431 (499)
                      ....|+..+.||+|+||.||+|.. .+++.||+|.+....  ....+.+.+|++++++++||||+++++++....    +
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            446799999999999999999995 578999999986432  233466889999999999999999999875432    2


Q ss_pred             ceeeeeecccCCCccccccc--cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          432 TVCLCLFHHSSASASASLVS--SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~--~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ...+++++++.+++...+..  .......++.|++.||+|||+      +++|.|++++.++.++++|||+++..
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  168 (353)
T cd07850          94 QDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  168 (353)
T ss_pred             CcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeC
Confidence            23456788888766554332  222334456889999988877      79999999999999999999998753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.52  E-value=7.4e-15  Score=140.25  Aligned_cols=134  Identities=16%  Similarity=0.162  Sum_probs=102.9

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|+..+.||+|+||.||+|+.. +++.||+|.+.... ....+.+.+|+.++++++||||+++++++....  ..+.++|
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv~e   79 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEG--AVYMCME   79 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCC--eEEEEEe
Confidence            5788899999999999999964 78999999986542 233467899999999999999999999887633  3445677


Q ss_pred             ccCCCcccccc-c-------cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLV-S-------SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~-~-------~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+.|+....+. .       .+.....++.|++.|++|||+       +++|.|++++.++.++++|||++.-
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  152 (286)
T cd06622          80 YMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGN  152 (286)
T ss_pred             ecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCccc
Confidence            77665433321 1       122334446788888888874       6899999999999999999998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.52  E-value=1.1e-14  Score=140.73  Aligned_cols=139  Identities=16%  Similarity=0.192  Sum_probs=107.3

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc----
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF----  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~----  431 (499)
                      ..++|+..+.+|+|+||.||+|+. .+++.||+|.+....  ......+.+|++++++++||||+++++++...+.    
T Consensus        10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            345799999999999999999996 468999999986543  2223456789999999999999999998865332    


Q ss_pred             --ceeeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 --TVCLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 --~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                        ...+++++++.+++...+..     .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        90 ~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  168 (310)
T cd07865          90 YKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARA  168 (310)
T ss_pred             CCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCccc
Confidence              23456778887765443322     222334556899999999887      7999999999999999999998753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.52  E-value=1.2e-14  Score=136.72  Aligned_cols=134  Identities=19%  Similarity=0.171  Sum_probs=103.6

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      ++|+..+.+|+|+||.||+|...++..+|+|.+..... ..+++.+|+.++++++|||++++++++..  .. .+.++++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~--~~-~~lv~e~   81 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSE--EP-IYIVTEY   81 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECC--CC-cEEEEEe
Confidence            46888899999999999999987888899999976442 34679999999999999999999987643  22 3456777


Q ss_pred             cCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          441 SSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       441 ~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +.++ +.+.+..      .+.....++.|++.|++|||+      +++|.|+++.+++.++++|||++..+
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~  152 (260)
T cd05070          82 MSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLI  152 (260)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeec
Confidence            7554 3333321      122234556889999999877      78999999999889999999998643

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.52  E-value=5.7e-15  Score=140.99  Aligned_cols=146  Identities=18%  Similarity=0.209  Sum_probs=110.1

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      +.++.+..+.++|+..+.||+|+||.||+|+. .+++.+|+|++.... .....+.+|+.+++++ +||||+++++++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            44566667888999999999999999999996 468899999886432 2246688999999999 79999999998754


Q ss_pred             cc---cceeeeeecccCCCccccc-cc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEE
Q 010856          429 IT---FTVCLCLFHHSSASASASL-VS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       429 ~~---~~~~~~l~~~~~~~~~~~l-~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~  490 (499)
                      .+   ....+.++||+.|+.+..+ ..        .+.....++.|+++|+.|||+      +++|.|+++.+++.++++
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~  166 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLV  166 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEc
Confidence            22   2345567788766544322 10        111123356788999999876      789999999999999999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||++..
T Consensus       167 dfg~~~~  173 (286)
T cd06638         167 DFGVSAQ  173 (286)
T ss_pred             cCCceee
Confidence            9999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.52  E-value=1e-14  Score=137.51  Aligned_cols=134  Identities=18%  Similarity=0.156  Sum_probs=103.5

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .+|...+.+|+|+||.||+|.. ++++.||+|.+.... ...+++.+|++++++++||||+++++++...+  ..+.+++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   82 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PFYIITE   82 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCC--CcEEEEE
Confidence            4578889999999999999996 468899999987543 34567899999999999999999999886633  3445677


Q ss_pred             ccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++ +.+.+..      .+.....++.|+++||+|||+      +++|.|+++.+++.++++|||++..
T Consensus        83 ~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~  153 (263)
T cd05052          83 FMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRL  153 (263)
T ss_pred             eCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccc
Confidence            77544 3333321      112233446899999998876      8999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.52  E-value=1.1e-14  Score=138.61  Aligned_cols=135  Identities=16%  Similarity=0.146  Sum_probs=102.2

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCC----EEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRM----EVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~----~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|...+.||+|+||+||+|..+ +|.    .+|+|....... .....+.+|+.++++++||||+++++++..  . ..
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~-~~   83 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS--S-QV   83 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec--C-ce
Confidence            56788899999999999999853 333    689998865542 345678999999999999999999998876  2 23


Q ss_pred             eeeeccc-CCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHS-SASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~-~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +.+++++ +|.+.+.+...     +.....++.|++.|++|||+      +++|.|+++++++.++++|||+++.+
T Consensus        84 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~  159 (279)
T cd05057          84 QLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (279)
T ss_pred             EEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccc
Confidence            3455555 44444433321     22234446899999999987      79999999999999999999988643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.52  E-value=1.5e-14  Score=136.14  Aligned_cols=135  Identities=18%  Similarity=0.172  Sum_probs=104.9

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|.+.+.||+|+||.||+|...+++.||+|.+.... ...+++.+|++++++++||||+++++++....  ..+.+++
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~e   81 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE--PIYIVTE   81 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCC--ceEEEEe
Confidence            45788899999999999999998777889999987543 33567999999999999999999998876532  3455677


Q ss_pred             ccCCC-cccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSAS-ASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~-~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++ +.+.+...      +.....++.|++.|++|||+      +++|.|+++.+++.++++|||++..
T Consensus        82 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~  152 (261)
T cd05034          82 YMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARL  152 (261)
T ss_pred             ccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECcccccee
Confidence            77554 33333221      12233445788999988877      7999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.52  E-value=1.3e-14  Score=138.20  Aligned_cols=135  Identities=19%  Similarity=0.168  Sum_probs=100.9

Q ss_pred             hhcccccccccCCcceEEEEEeCC------CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD------RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ++|+..+.||+|+||.||+|....      ...||+|.+.... ....+.+.+|++++++++||||+++++++...+  .
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--~   82 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ--P   82 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC--c
Confidence            468888999999999999998532      2579999986543 233567899999999999999999999887633  3


Q ss_pred             eeeeecccCC-Ccccccccc--------------------ccccccccccccccceeecc------CCCcccEEEeeCCC
Q 010856          434 CLCLFHHSSA-SASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG  486 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~  486 (499)
                      ...+++++.+ ++.+.+...                    ......++.|++.||+|||+      +++|.|+++++++.
T Consensus        83 ~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~  162 (283)
T cd05048          83 TCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLT  162 (283)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCc
Confidence            3446666654 443333211                    01122346889999999876      89999999999999


Q ss_pred             eEEEEEEEeec
Q 010856          487 VEVICFVFEIL  497 (499)
Q Consensus       487 ~~~~~f~~~~~  497 (499)
                      ++++|||++..
T Consensus       163 ~~L~dfg~~~~  173 (283)
T cd05048         163 VKISDFGLSRD  173 (283)
T ss_pred             EEECCCcceee
Confidence            99999998753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.52  E-value=1.3e-14  Score=135.52  Aligned_cols=129  Identities=18%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCCc
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASA  445 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~  445 (499)
                      ++||+|+||.||+|...+++.||+|.+..... .....+.+|++++++++||||+++++++...+  ...+++|++.++.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~~~~~~   78 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQ--PIYIVMELVPGGD   78 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCC--ccEEEEECCCCCc
Confidence            36899999999999987889999999875442 22456889999999999999999999887643  3455677765443


Q ss_pred             cc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          446 SA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       446 ~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +. .+..     .+.....++.|++.|+.|+|+      +++|.|+++++++.++++|||+++.
T Consensus        79 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~  142 (250)
T cd05085          79 FLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQ  142 (250)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCcccee
Confidence            33 2221     112223445788888888876      7999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=8.9e-16  Score=135.33  Aligned_cols=136  Identities=18%  Similarity=0.170  Sum_probs=106.6

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc--cc-ceeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI--TF-TVCLC  436 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~--~~-~~~~~  436 (499)
                      .+..+.||-|+||+||.+.. ++|+.||.|++..--  -...+.+.+|++++..++|.|++..++.....  ++ .+.++
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            45678999999999999996 579999999885322  22357789999999999999999999865431  12 24555


Q ss_pred             eecccCCCccccccccccccc----cccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSSASASASLVSSLTLSR----PAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~~~~~~----~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +.|.|..++++.+........    -..+||.+||.|||+      ++||.|.|++.+=-.||||||++||-
T Consensus       135 ~TELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARve  206 (449)
T KOG0664|consen  135 LTELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTW  206 (449)
T ss_pred             HHHHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEeccccccccc
Confidence            678888887776655444322    224899999999977      89999999999999999999999974

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.52  E-value=1.9e-14  Score=137.47  Aligned_cols=135  Identities=16%  Similarity=0.111  Sum_probs=104.8

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|...+.+|.|++|.||+|.. .+++.+|+|.+..... ....++.+|++++++++||||++++++|...+....+++++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            577889999999999999996 4688999999975432 34567999999999999999999999887644444456777


Q ss_pred             ccCCCcccc-ccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          440 HSSASASAS-LVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       440 ~~~~~~~~~-l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++.|+.+.. +..        .......++.|++.||+|||+      +++|.|+++++++.++++|||++.
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~  153 (287)
T cd06621          82 YCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSG  153 (287)
T ss_pred             ecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccc
Confidence            776554332 111        112233456899999999877      789999999999999999999864

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.52  E-value=9.9e-15  Score=137.40  Aligned_cols=130  Identities=20%  Similarity=0.140  Sum_probs=96.0

Q ss_pred             cccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||.||+|...    ++..||+|.+.... ....+.+.+|+.+++.++||||+++++++...+...+. +++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~l-v~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLV-VLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEE-EEecC
Confidence            46899999999999852    24579999986433 33457889999999999999999999988765544444 55555


Q ss_pred             C-CCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          442 S-ASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       442 ~-~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      . +++...+...     ......++.|++.|++|||+      +++|.|+++++++.++++|||+++.
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~  147 (262)
T cd05058          80 KHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARD  147 (262)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCcccccc
Confidence            4 4443333221     11123345789999998877      7999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.52  E-value=1.2e-14  Score=140.12  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=99.7

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCC----EEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRM----EVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~----~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|+..+.||+|+||.||+|.. .+|.    .||+|.+..... .....+.+|+.+++.++||||+++++++....  . 
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~--~-   83 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT--I-   83 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCC--c-
Confidence            4577888999999999999985 3454    478888865432 22346889999999999999999999886532  2 


Q ss_pred             eeeecccC-CCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSS-ASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~-~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++++. |.+.+.+...     +.....++.|++.||+|||+      +++|.||++.+++.++++|||++..
T Consensus        84 ~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~  158 (303)
T cd05110          84 QLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (303)
T ss_pred             eeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEcccccccc
Confidence            23555554 4444433221     12234446899999999887      7899999999999999999999864

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.51  E-value=1.7e-14  Score=135.35  Aligned_cols=135  Identities=15%  Similarity=0.080  Sum_probs=104.4

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|+||.||.++. .+++.+++|.+....  ....+++.+|++++++++|+||+++++++...+  ..+.++
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~~~~   78 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDN--TLLIEM   78 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCC--eEEEEE
Confidence            477889999999999999985 578899999987543  344567899999999999999999999987743  445567


Q ss_pred             cccCCC-cccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSAS-ASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~-~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++.++ +.+.+...      ......++.|+++|++|||+      +++|.|+++++++.++++|||++...
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~  151 (256)
T cd08221          79 EYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKIL  151 (256)
T ss_pred             EecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEc
Confidence            777554 33333221      11223445789999999876      79999999999999999999988653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.51  E-value=1.2e-14  Score=141.39  Aligned_cols=133  Identities=14%  Similarity=0.104  Sum_probs=100.3

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      +|...+.||+|+||.||+|+.. +++.||+|++.+..   ....+.+..|.+++... +|++|+++++++...+  ..++
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~l   78 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMD--RLYF   78 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCC--EEEE
Confidence            4778899999999999999964 68899999997643   22345677888888877 6899999988876643  3455


Q ss_pred             eecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          437 LFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++||+.++ +...+...    +.....++.|++.||+|||+      +++|.|+++++++.++++|||+++
T Consensus        79 v~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~  149 (323)
T cd05616          79 VMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  149 (323)
T ss_pred             EEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCce
Confidence            67777544 43333222    22234456899999998876      799999999999999999999875

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.51  E-value=1.2e-14  Score=138.75  Aligned_cols=134  Identities=10%  Similarity=0.074  Sum_probs=105.7

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|+..+.||+|+||+||+++. .+|+.||+|++.... ....+.+.+|+++++.++||||+++++++...  ...+.++
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~~lv~   82 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNE--NNICMCM   82 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecC--CEEEEEE
Confidence            5688889999999999999995 468999999986543 33457899999999999999999999998774  3456678


Q ss_pred             cccCCCccccc-cc----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSASASASL-VS----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~~~~~l-~~----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ||+.++.+..+ ..    .+.....++.|++.|++|||+       +++|.|+++++++.++++|||++.
T Consensus        83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~  152 (284)
T cd06620          83 EFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSG  152 (284)
T ss_pred             ecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCccc
Confidence            88876654432 22    222344556888999988874       589999999999999999999865

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.51  E-value=1.3e-14  Score=139.97  Aligned_cols=135  Identities=21%  Similarity=0.225  Sum_probs=106.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..|...+.+|+|+||.||+|+. .+++.||+|.+....   ....+.+.+|+++++.++||||+++++++...+  ..++
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~--~~~l   92 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREH--TAWL   92 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCC--eEEE
Confidence            4488889999999999999996 468999999986443   223457889999999999999999999987643  3456


Q ss_pred             eecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.|++...+..     .+.....++.|++.||.|||+      +++|.|+++++++.++++|||++..
T Consensus        93 v~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~  164 (307)
T cd06607          93 VMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASL  164 (307)
T ss_pred             EHHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCccee
Confidence            788887765443321     222233456899999999987      6899999999999999999998764

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.51  E-value=1.1e-14  Score=138.68  Aligned_cols=136  Identities=20%  Similarity=0.189  Sum_probs=102.6

Q ss_pred             hhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .++|...+.+|+|+||.||+|...      +++.||+|.++..... ..+.+.+|++++++++||||+++++++...+  
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--   81 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGD--   81 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCC--
Confidence            356888899999999999999852      2578999999765433 4578999999999999999999999887643  


Q ss_pred             eeeeeecccCCC-cccccccc------------------ccccccccccccccceeecc------CCCcccEEEeeCCCe
Q 010856          433 VCLCLFHHSSAS-ASASLVSS------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGV  487 (499)
Q Consensus       433 ~~~~l~~~~~~~-~~~~l~~~------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~  487 (499)
                      ..+++++++.++ +...+...                  +.....++.|++.|++|||+      +++|.|++++.++.+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~  161 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVV  161 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeE
Confidence            345567776544 33222211                  11122335788888888876      789999999999999


Q ss_pred             EEEEEEEeec
Q 010856          488 EVICFVFEIL  497 (499)
Q Consensus       488 ~~~~f~~~~~  497 (499)
                      +++|||+++.
T Consensus       162 kl~d~g~~~~  171 (280)
T cd05049         162 KIGDFGMSRD  171 (280)
T ss_pred             EECCccccee
Confidence            9999998763

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.51  E-value=1.1e-14  Score=137.47  Aligned_cols=135  Identities=18%  Similarity=0.159  Sum_probs=101.1

Q ss_pred             hhcccccccccCCcceEEEEEeC-C---CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-D---RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~---~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|+..+.+|+|+||.||+|+.. +   +..+|+|.++... ....+.+.+|+.++++++||||+++++++...+  ..+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   81 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK--PVM   81 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC--ccE
Confidence            56888899999999999999852 2   3479999986543 233567899999999999999999999887643  345


Q ss_pred             eeecccCCC-cccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSAS-ASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++|++.++ +.+.+...     ......++.|++.|++|||+      +++|.|++++.++.++++|||.+..
T Consensus        82 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~  155 (267)
T cd05066          82 IVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRV  155 (267)
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccc
Confidence            567777554 33333221     11233445788888887765      8999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.51  E-value=1.5e-14  Score=138.63  Aligned_cols=135  Identities=19%  Similarity=0.225  Sum_probs=104.5

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|+..+.||+|++|.||+|+. .+|+.||+|.+....  ....+.+.+|++++++++||||+++++++...+  ..+.+
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   79 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK--RLYLV   79 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCC--eEEEE
Confidence            4688889999999999999996 478999999986543  233467889999999999999999999987643  45567


Q ss_pred             ecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeC-CCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-PGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-~~~~~~~f~~~~~  497 (499)
                      +||+.+++...+...      ......++.|++.||+|||+      +++|.|++++.+ +.++++|||++..
T Consensus        80 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~  152 (294)
T PLN00009         80 FEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARA  152 (294)
T ss_pred             EecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccc
Confidence            888877654443221      12233456799999999877      799999999854 5689999998753

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.51  E-value=1.1e-14  Score=137.88  Aligned_cols=135  Identities=21%  Similarity=0.201  Sum_probs=98.7

Q ss_pred             cccccccccCCcceEEEEEeC----CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccc----
Q 010856          363 FSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT----  432 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~----  432 (499)
                      |...+.||+|+||.||+|..+    +++.||+|++....  ....+++.+|++++++++||||+++++++...+..    
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            456788999999999999852    46889999996543  23456789999999999999999999987653211    


Q ss_pred             eeeeeecccC-CCcccccc----------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          433 VCLCLFHHSS-ASASASLV----------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       433 ~~~~l~~~~~-~~~~~~l~----------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ..+.+++++. |++...+.          ........++.|++.|++|||+      +++|.|+++++++.++++|||++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~  160 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLS  160 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccccc
Confidence            1233455554 44322221          1112234456899999999877      79999999999999999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      +.
T Consensus       161 ~~  162 (273)
T cd05074         161 KK  162 (273)
T ss_pred             cc
Confidence            64

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.51  E-value=1.6e-14  Score=141.55  Aligned_cols=138  Identities=14%  Similarity=0.125  Sum_probs=104.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----cc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----FT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~~  432 (499)
                      ..+|...+.||+|+||.||+|+. .+|+.||+|++....  ......+.+|+++++.++||||+++++++...+    ..
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            36799999999999999999995 478999999986532  223456889999999999999999999876432    12


Q ss_pred             eeeeeecccCCCcccccc--ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLV--SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++.+++++.+.+.....  ..+.....++.|++.||+|||+      +++|.|++++.++.++++|||+++.
T Consensus        94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~  166 (342)
T cd07879          94 DFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARH  166 (342)
T ss_pred             eEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcC
Confidence            345667777654332211  1222334456889999988776      7899999999999999999998753

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.51  E-value=1.6e-14  Score=135.42  Aligned_cols=135  Identities=18%  Similarity=0.116  Sum_probs=103.8

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|+||.||+|.. .+++.||+|.+....  ....+.+.+|++++++++||||+++++++...+  ..++++
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKG--KLNIVM   78 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCC--EEEEEE
Confidence            477788999999999999996 468999999987543  344677899999999999999999999887633  445577


Q ss_pred             cccCCC-cccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSAS-ASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~-~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++.|+ +.+.+...      +.....++.|++.|++|||+      +++|.||+++.++.++++|||++..+
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~  151 (256)
T cd08529          79 EYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLL  151 (256)
T ss_pred             EeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceec
Confidence            777544 33333221      11223345789999998877      79999999999999999999987643

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.51  E-value=1.2e-14  Score=137.49  Aligned_cols=128  Identities=18%  Similarity=0.204  Sum_probs=95.6

Q ss_pred             cccccCCcceEEEEEeC---CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          367 NLIGKGGFGSVYKARLG---DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      +.||+|+||.||+|...   ++..+|+|.++.... .....+.+|+.++++++||||+++++++...+  ..+.++||+.
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~   78 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVT--PYLLVMEFCP   78 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC--CcEEEEECCC
Confidence            35899999999999853   346799998865542 23457889999999999999999999886633  3455677776


Q ss_pred             CCcc-cccccc---------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          443 ASAS-ASLVSS---------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       443 ~~~~-~~l~~~---------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++.+ +.+...         +.....++.|++.|++|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~  148 (269)
T cd05087          79 LGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSH  148 (269)
T ss_pred             CCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccc
Confidence            5433 333211         11223446789999998865      899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.51  E-value=6.9e-15  Score=132.61  Aligned_cols=137  Identities=15%  Similarity=0.188  Sum_probs=108.9

Q ss_pred             CHHHHHHHhhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          352 SYLELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       352 ~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      +++++.+-++     +.+|+|+|+.|--|. ..+|..||||++++.....+.++.+|++++.+. .|+||++++++|.+ 
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd-  147 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED-  147 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc-
Confidence            4666666654     679999999999888 678999999999988766788899999999998 59999999999987 


Q ss_pred             ccceeeeeecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCC---CeEEEEEEEe
Q 010856          430 TFTVCLCLFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVICFVFE  495 (499)
Q Consensus       430 ~~~~~~~l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~f~~~  495 (499)
                       ...++.++|-|.|+ ++..++.    .+....+++..|+.||.|||.      +.||+|||-++.+   -||+|||-+.
T Consensus       148 -d~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLg  226 (463)
T KOG0607|consen  148 -DTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLG  226 (463)
T ss_pred             -cceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccc
Confidence             34566788888665 4444433    333344556788999999976      8999999998775   6799999653

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.51  E-value=1.1e-14  Score=139.33  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             hcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      +|.+.+.||+|+||.||+|+..      ....+|+|.+..... ...+++.+|+.+++.++||||+++++.+...+.  .
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~   78 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGP--L   78 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCC--c
Confidence            4677899999999999999842      235788988865432 335678999999999999999999998876432  3


Q ss_pred             eeeecccCCC-cccccccc----------------------------ccccccccccccccceeecc------CCCcccE
Q 010856          435 LCLFHHSSAS-ASASLVSS----------------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAF  479 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~~----------------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~  479 (499)
                      +.+++++.++ +.+.+...                            +.....++.|++.|++|||+      +++|.||
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~ni  158 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNV  158 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheE
Confidence            4456666544 32222110                            11112345789999988876      8999999


Q ss_pred             EEeeCCCeEEEEEEEeec
Q 010856          480 VFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       480 l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+++.++++|||+++.
T Consensus       159 ll~~~~~~kl~dfg~~~~  176 (290)
T cd05045         159 LVAEGRKMKISDFGLSRD  176 (290)
T ss_pred             EEcCCCcEEecccccccc
Confidence            999999999999999864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=1.6e-14  Score=136.16  Aligned_cols=137  Identities=17%  Similarity=0.203  Sum_probs=104.7

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|...+.+|+|+||.||+|+. .++..||+|.+....     ....+.+.+|++++++++||||+++++++...+....
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4688899999999999999995 468999999885432     2234578899999999999999999998876544444


Q ss_pred             eeeecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++|+..++ +...+..    .......++.|++.|++|||+      +++|.|++++.++.++++|||++..
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  155 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccc
Confidence            4566776554 3333322    122334556889999998876      7899999999999999999998864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.51  E-value=8.9e-15  Score=139.83  Aligned_cols=136  Identities=21%  Similarity=0.170  Sum_probs=102.8

Q ss_pred             hhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      ..+|+..+.+|+|+||.||+|...      ++..||+|++..... ...+.+.+|+.++++++||||+++++++...+  
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~--   81 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGK--   81 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--
Confidence            457888999999999999999852      467899999875432 33467999999999999999999999887633  


Q ss_pred             eeeeeecccCCC-cccccccc--------------------------ccccccccccccccceeecc------CCCcccE
Q 010856          433 VCLCLFHHSSAS-ASASLVSS--------------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAF  479 (499)
Q Consensus       433 ~~~~l~~~~~~~-~~~~l~~~--------------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~  479 (499)
                      ...++++++.++ +...+...                          +.....++.|++.||+|||+      +++|.|+
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~ni  161 (288)
T cd05050          82 PMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNC  161 (288)
T ss_pred             ccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhhe
Confidence            345567776554 33232210                          11123456889999998866      7999999


Q ss_pred             EEeeCCCeEEEEEEEeec
Q 010856          480 VFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       480 l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+++.++++|||++..
T Consensus       162 l~~~~~~~~l~dfg~~~~  179 (288)
T cd05050         162 LVGENMVVKIADFGLSRN  179 (288)
T ss_pred             EecCCCceEECcccccee
Confidence            999999999999998753

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.51  E-value=1.5e-14  Score=140.52  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=100.0

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~  436 (499)
                      +|...+.||+|+||.||+|+. .+|+.||+|++.+..   ....+.+..|+++++.+. |++|+++++++...+  ..++
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--~~~l   78 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVD--RLYF   78 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCC--EEEE
Confidence            366778999999999999995 478999999997542   233456888999998885 567778887776533  3455


Q ss_pred             eecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          437 LFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++||+.|+ +...+..    .+.....++.|++.||+|||+      +++|.|++++.++.++++|||+++
T Consensus        79 v~Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~  149 (323)
T cd05615          79 VMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCK  149 (323)
T ss_pred             EEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEecccccc
Confidence            77777554 3333222    223344556899999999887      799999999999999999999875

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.50  E-value=2.2e-14  Score=135.05  Aligned_cols=135  Identities=21%  Similarity=0.272  Sum_probs=106.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ++|+..+.+|+|+||.||+|.. .+++.+|+|.+........+.+.+|++++++++||||+++++++...+  ..+++++
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~l~~e   80 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRD--KLWIVME   80 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCC--EEEEEEe
Confidence            5688889999999999999996 467899999998665556678999999999999999999999886633  4456778


Q ss_pred             ccCCCcccccc-c-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLV-S-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~-~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +..++....+. .     .......++.|++.|++|||+      +++|.||++++++.++++|||++..
T Consensus        81 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  150 (262)
T cd06613          81 YCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQ  150 (262)
T ss_pred             CCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchh
Confidence            87765444322 1     112233446889999999877      7999999999999999999998753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.50  E-value=1.5e-14  Score=137.86  Aligned_cols=134  Identities=15%  Similarity=0.213  Sum_probs=105.7

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|+..+.||+|++|.||+|+.. +|+.||+|.++... ....+.+.+|++++++++||||+++++++...+  ...++++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   78 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTEN--KLMLVFE   78 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCC--cEEEEEe
Confidence            4778899999999999999964 68999999997654 233466789999999999999999999987743  3456788


Q ss_pred             ccCCCccccccc-------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS-------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~-------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+++...+..       .+.....++.|+++||+|||+      +++|.|+++++++.++++|||.+..
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~  149 (284)
T cd07836          79 YMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARA  149 (284)
T ss_pred             cCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhh
Confidence            888765444322       122233446889999999876      7899999999999999999998753

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.50  E-value=1.4e-14  Score=144.64  Aligned_cols=130  Identities=14%  Similarity=0.114  Sum_probs=101.2

Q ss_pred             hhcccccccccCCcceEEEEEeC---CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG---DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..|...+.||+|+||.||+|...   .+..||+|.+...     +...+|++++++++|||||++++++....  ...++
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~--~~~lv  164 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKS--TVCMV  164 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCC--EEEEE
Confidence            46899999999999999999742   4678999988643     23568999999999999999998876532  34456


Q ss_pred             ecccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.+++...+..    .+.....++.|++.||+|||+      ++||.|++++.++.++++|||++..
T Consensus       165 ~e~~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~  234 (392)
T PHA03207        165 MPKYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACK  234 (392)
T ss_pred             ehhcCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccc
Confidence            67777766554422    222344556899999998877      7999999999999999999998753

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.50  E-value=2.7e-14  Score=133.95  Aligned_cols=133  Identities=19%  Similarity=0.124  Sum_probs=102.1

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .+|...+.+|+|+||.||+|.. .|..||+|.++...  ..+.+.+|+.++++++|+|++++++++...+.. .+.++++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~-~~lv~e~   81 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG-LYIVTEY   81 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCc-eEEEEEC
Confidence            4688889999999999999986 47789999886432  346789999999999999999999987653333 3456777


Q ss_pred             cCC-Ccccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+ .+.+.+...      +.....++.|++.||+|||+      +++|.|+++++++.++++|||+...
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  151 (256)
T cd05082          82 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  151 (256)
T ss_pred             CCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCcccee
Confidence            755 443333221      12234456789999998877      7999999999999999999998764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.50  E-value=1.4e-14  Score=138.35  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=106.4

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.||+|+||.||+|..+ +++.||+|.++...  ....+.+.+|++++++++|+||+++++++...+  ...+++
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~iv~   79 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKG--RLYLVF   79 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECC--EEEEEE
Confidence            5888899999999999999964 68899999986543  334578999999999999999999999987633  455678


Q ss_pred             cccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++....+...     ......++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~  149 (288)
T cd07833          80 EYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARA  149 (288)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccc
Confidence            88877765433221     22233445889999998876      7899999999999999999998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.50  E-value=1.7e-14  Score=136.09  Aligned_cols=133  Identities=17%  Similarity=0.269  Sum_probs=102.8

Q ss_pred             hcccccccccCCcceEEEEEeCCCCEEEEEEeeccCC------ccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          362 EFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG------RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      +|+..+.||+|+||.||+|...+++.+|+|.+.....      ...+.+.+|++++++++|+||+++++++...  ....
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~   78 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDD--NTIS   78 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecC--CeEE
Confidence            3777899999999999999987899999999865421      1235688999999999999999999998764  3445


Q ss_pred             eeecccCCCccc-cccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          436 CLFHHSSASASA-SLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       436 ~l~~~~~~~~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++|++.|+.+. .+..    .+.....++.|++.|++|||+      +++|.|+++++++.++++|||+..
T Consensus        79 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  150 (265)
T cd06631          79 IFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCAR  150 (265)
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhH
Confidence            567777654333 3322    222233445789999998877      799999999999999999999864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.50  E-value=1.1e-14  Score=141.74  Aligned_cols=141  Identities=17%  Similarity=0.133  Sum_probs=108.4

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      +...+++|+..+.||+|+||.||+|.. .+++.||+|++.+..  ....+.+.+|++++++++||||+++++++..... 
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~-   83 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE-   83 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC-
Confidence            345677899999999999999999985 479999999986432  2345678899999999999999999998865332 


Q ss_pred             eeeeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+.+++++++++...+..   .......++.|+++||+|||+      +++|.|+++++++.++++|||.+..
T Consensus        84 ~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~  157 (328)
T cd07856          84 DIYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARI  157 (328)
T ss_pred             cEEEEeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccc
Confidence            3345778887664333321   122233456889999988877      7899999999999999999998753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.50  E-value=1.2e-14  Score=140.08  Aligned_cols=134  Identities=18%  Similarity=0.189  Sum_probs=99.5

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCC--EEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRM--EVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~--~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .+|+..+.||+|+||.||+|+.+ ++.  .+|+|.++... ....+.+.+|++++.++ +||||+++++++...+  ..+
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~--~~~   84 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLY   84 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC--Cce
Confidence            56888899999999999999963 454  45777765433 23356788999999999 8999999999886643  334


Q ss_pred             eeecccCC-Ccccccccc--------------------ccccccccccccccceeecc------CCCcccEEEeeCCCeE
Q 010856          436 CLFHHSSA-SASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVE  488 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~  488 (499)
                      .+++|+.+ .+...+...                    ......++.|++.|++|||+      +++|.|+++++++.++
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~k  164 (303)
T cd05088          85 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAK  164 (303)
T ss_pred             EEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEE
Confidence            56677654 433333211                    11233446789999998887      7999999999999999


Q ss_pred             EEEEEEee
Q 010856          489 VICFVFEI  496 (499)
Q Consensus       489 ~~~f~~~~  496 (499)
                      ++|||++.
T Consensus       165 l~dfg~~~  172 (303)
T cd05088         165 IADFGLSR  172 (303)
T ss_pred             eCccccCc
Confidence            99999874

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.50  E-value=3.6e-15  Score=143.49  Aligned_cols=138  Identities=15%  Similarity=0.137  Sum_probs=106.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|...+++|+|+||.++.++. .++..|++|.+....  ...++...+|+.++++++|||||...+.|...+ +...++
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~-~~l~Iv   82 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDG-QLLCIV   82 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCC-ceEEEE
Confidence            5688899999999999999985 467899999997655  344557889999999999999999999887643 423445


Q ss_pred             ecccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeeccC
Q 010856          438 FHHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILLN  499 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~~  499 (499)
                      ++|+.|+ +.+.+..      .+.....+..|++.|+.|||+      ++|+.||.+++++.|++-|||+|.+++
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~  157 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILN  157 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcC
Confidence            6666554 4333322      222233335799999999885      899999999999999999999998874

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.50  E-value=3e-14  Score=134.15  Aligned_cols=137  Identities=15%  Similarity=0.165  Sum_probs=104.6

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|+||.||++.. .+++.||+|.++...  ....+++.+|++++++++||||+++++++...+....++++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            477889999999999999985 578899999987543  23356788999999999999999999987654444455677


Q ss_pred             cccCCCccc-cccc--------cccccccccccccccceeec-----c------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSASASA-SLVS--------SLTLSRPAKGGGFRGCVLWH-----V------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~-~l~~--------~~~~~~~~~~~i~~gl~yLH-----~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |++.++.+. .+..        .+.....++.|++.|++|||     +      +++|.|+++++++.++++|||+...+
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            777654332 2221        11223344678999999888     3      79999999999999999999987653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.50  E-value=1.6e-14  Score=138.62  Aligned_cols=136  Identities=15%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCC-CCCccccceeEEcccc---cee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIR-HRNLIKILHGVAVITF---TVC  434 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~---~~~  434 (499)
                      +|+..+.||+|+||.||+|+. .+++.||+|.++...  ......+.+|+.+++.++ ||||+++++++...+.   ...
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            588889999999999999996 478999999986543  223467889999999995 6999999998866432   124


Q ss_pred             eeeecccCCCccccccc---------cccccccccccccccceeecc------CCCcccEEEee-CCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVS---------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-EPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~---------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-~~~~~~~~f~~~~~  497 (499)
                      +++++++.+++...+..         .+.....++.|+++||+|||+      +++|.|+++++ ++.++++|||+++.
T Consensus        82 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~  160 (295)
T cd07837          82 YLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRA  160 (295)
T ss_pred             EEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeeccccee
Confidence            56788888765444322         222334456899999998877      79999999988 78999999998763

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.50  E-value=1.4e-14  Score=137.53  Aligned_cols=136  Identities=18%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             hhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .++|...+.||+|+||.||+|...      ++..||+|.+.... ......+.+|+.+++.++||||+++++++....  
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--   82 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ--   82 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC--
Confidence            357888899999999999999853      23689999986543 233567889999999999999999999887643  


Q ss_pred             eeeeeecccCC-Ccccccccc--------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEE
Q 010856          433 VCLCLFHHSSA-SASASLVSS--------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVIC  491 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~~--------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~  491 (499)
                      ..++++|++.+ .+...+...              +.....++.|++.|++|||+      +++|.|++++.++.++++|
T Consensus        83 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~d  162 (277)
T cd05032          83 PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGD  162 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECC
Confidence            34556777754 433333211              11223346799999999987      7999999999999999999


Q ss_pred             EEEeec
Q 010856          492 FVFEIL  497 (499)
Q Consensus       492 f~~~~~  497 (499)
                      ||+++.
T Consensus       163 fg~~~~  168 (277)
T cd05032         163 FGMTRD  168 (277)
T ss_pred             cccchh
Confidence            998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.50  E-value=1.1e-14  Score=138.22  Aligned_cols=127  Identities=10%  Similarity=0.029  Sum_probs=94.3

Q ss_pred             ccccCCcceEEEEEeCC-------------------------CCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCcccc
Q 010856          368 LIGKGGFGSVYKARLGD-------------------------RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI  422 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~~~-------------------------~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l  422 (499)
                      .||+|+||.||+|....                         ...||+|+++.........+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999997411                         13588998865544445678899999999999999999


Q ss_pred             ceeEEccccceeeeeecccCCCcccccc-c-----cccccccccccccccceeecc------CCCcccEEEeeCC-----
Q 010856          423 LHGVAVITFTVCLCLFHHSSASASASLV-S-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-----  485 (499)
Q Consensus       423 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-----  485 (499)
                      ++++....  ..++++||+.++.+..+. .     .+.+...++.|+++||+|||+      +++|.|+++++.+     
T Consensus        82 ~~~~~~~~--~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~  159 (274)
T cd05076          82 HGVCVRGS--ENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGT  159 (274)
T ss_pred             EEEEEeCC--ceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCc
Confidence            99987633  445677888766544332 1     122334556899999999887      7899999997542     


Q ss_pred             --CeEEEEEEEee
Q 010856          486 --GVEVICFVFEI  496 (499)
Q Consensus       486 --~~~~~~f~~~~  496 (499)
                        .++++|||++.
T Consensus       160 ~~~~kl~d~g~~~  172 (274)
T cd05076         160 SPFIKLSDPGVSF  172 (274)
T ss_pred             cceeeecCCcccc
Confidence              37999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.50  E-value=2.1e-14  Score=135.05  Aligned_cols=133  Identities=18%  Similarity=0.172  Sum_probs=102.4

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      ++|.....||+|+||.||+|....+..+|+|.+.... ...+.+.+|++++++++|||++++++++..  .. .+.++++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--~~-~~~v~e~   81 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVSE--EP-IYIVTEF   81 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEcC--CC-cEEEEEc
Confidence            4588889999999999999997666789999886543 234678999999999999999999987643  22 3456777


Q ss_pred             cCC-Ccccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+ .+.+.+...      +.....++.|++.||+|||+      +++|.|+++++++.++++|||++..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~  151 (260)
T cd05069          82 MGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARL  151 (260)
T ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceE
Confidence            755 444433221      12233446789999999987      7999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.50  E-value=1.8e-14  Score=136.24  Aligned_cols=135  Identities=18%  Similarity=0.157  Sum_probs=101.5

Q ss_pred             hhcccccccccCCcceEEEEEeC-CC---CEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DR---MEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .+|...+.+|+|+||.||+|+.+ ++   ..||+|.++... ....++|.+|+.+++.++||||+++++++...+  ..+
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~--~~~   81 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR--PVM   81 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCC--ceE
Confidence            45788899999999999999953 33   369999987543 234568999999999999999999999876533  345


Q ss_pred             eeecccCCCccc-ccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASA-SLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~-~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++|++.++.+. .+...     ......++.|++.|++|||+      +++|.|++++.++.++++|||++..
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~  155 (269)
T cd05065          82 IITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRF  155 (269)
T ss_pred             EEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccc
Confidence            567777655433 22211     11233445788888888776      8999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=1.2e-15  Score=148.86  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=104.9

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      |.+.-.+|.|+||+||+|.-+ ++-.-|.|++........++++-||+|++.++||+||++++.|.- +. ..+++.+++
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~-en-kLwiliEFC  111 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYF-EN-KLWILIEFC  111 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhc-cC-ceEEEEeec
Confidence            445567899999999999954 466677888877766778899999999999999999999987654 22 345577888


Q ss_pred             CCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +|+..+.+..      .+...+-+++|++.||.|||+      +.|..|||++.+|.++++|||.+-
T Consensus       112 ~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSA  178 (1187)
T KOG0579|consen  112 GGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSA  178 (1187)
T ss_pred             CCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccc
Confidence            8886665431      223344557899999999987      799999999999999999999764

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.50  E-value=1.6e-14  Score=135.60  Aligned_cols=127  Identities=14%  Similarity=0.175  Sum_probs=95.4

Q ss_pred             ccccCCcceEEEEEeC---CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCC
Q 010856          368 LIGKGGFGSVYKARLG---DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSA  443 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~  443 (499)
                      .||+|+||.||+|..+   ++..||+|++..... ...+.+.+|++++++++||||+++++++.. +  ..+.++|++.+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~--~~~lv~e~~~~   78 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-E--ALMLVMEMASG   78 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-C--CeEEEEEeCCC
Confidence            3899999999999753   355799999875542 334679999999999999999999998743 2  23456677755


Q ss_pred             Cccc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          444 SASA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       444 ~~~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+. .+..     .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        79 ~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  144 (257)
T cd05115          79 GPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKA  144 (257)
T ss_pred             CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCcccc
Confidence            4333 3321     122234456899999999877      7999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.49  E-value=2.5e-14  Score=136.50  Aligned_cols=136  Identities=17%  Similarity=0.161  Sum_probs=106.4

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      |+..+.+|+|+||.||+|... +++.+|+|++....  ....+.+.+|+++++.++|||++++++++...+....+++++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            566788999999999999964 58899999997653  334567889999999999999999999987642234556788


Q ss_pred             ccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++.+++...+...     +.....++.|+++|++|||+      +++|.|+++++++.++++|||++...
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~  150 (287)
T cd07840          81 YMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPY  150 (287)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeec
Confidence            8877654433221     22234456899999999877      79999999999999999999988643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.49  E-value=1.9e-14  Score=138.20  Aligned_cols=132  Identities=20%  Similarity=0.232  Sum_probs=102.4

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      |.....||+|+||.||+|.. .+++.||+|.++.......+.+.+|+.+++.++||||+++++++...+  ..+++++++
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~iv~e~~  100 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGE--ELWVLMEFL  100 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCC--eEEEEEecC
Confidence            44456799999999999996 478999999997655445677899999999999999999999887633  345577777


Q ss_pred             CCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .++....+..    .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus       101 ~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~  165 (297)
T cd06659         101 QGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCA  165 (297)
T ss_pred             CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHh
Confidence            6654433322    122334456889999988876      899999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.49  E-value=3.3e-14  Score=133.28  Aligned_cols=134  Identities=13%  Similarity=0.106  Sum_probs=103.8

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|+..+.+|+|+||.||+++. .+++.||+|.++... ....+.+.+|+.+++.++||||+++++++...+  ..+++++
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   78 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADG--HLYIVME   78 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECC--EEEEEEe
Confidence            477889999999999999996 468899999986543 334567889999999999999999999887633  4456777


Q ss_pred             ccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++ +...+..      .......++.|++.||.|||+      +++|.|+++++++.++++|||.+..
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~  149 (255)
T cd08219          79 YCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARL  149 (255)
T ss_pred             eCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCccee
Confidence            77554 3332221      112233446899999999887      7999999999999999999998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.49  E-value=1.9e-14  Score=138.78  Aligned_cols=138  Identities=19%  Similarity=0.193  Sum_probs=102.4

Q ss_pred             HHhhhcccccccccCCcceEEEEEe--------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEE
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL--------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVA  427 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~  427 (499)
                      ....+|...+.||+|+||.||+|+.        .++..||+|.+.... ....+++.+|+.+++.+ +||||+++++++.
T Consensus        12 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   91 (304)
T cd05101          12 FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT   91 (304)
T ss_pred             ccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEe
Confidence            4456788899999999999999973        124579999986543 23456789999999999 8999999999887


Q ss_pred             ccccceeeeeecccCCC-ccccccccc--------------------cccccccccccccceeecc------CCCcccEE
Q 010856          428 VITFTVCLCLFHHSSAS-ASASLVSSL--------------------TLSRPAKGGGFRGCVLWHV------GVDFAAFV  480 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~~~-~~~~l~~~~--------------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l  480 (499)
                      ...  ..+++++++.++ +...+....                    .....++.|+++||+|||+      +++|.|++
T Consensus        92 ~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nil  169 (304)
T cd05101          92 QDG--PLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVL  169 (304)
T ss_pred             cCC--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEE
Confidence            633  344567776554 333322111                    1112335789999999877      79999999


Q ss_pred             EeeCCCeEEEEEEEeec
Q 010856          481 FVLEPGVEVICFVFEIL  497 (499)
Q Consensus       481 ~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.++++|||+++.
T Consensus       170 i~~~~~~kl~D~g~~~~  186 (304)
T cd05101         170 VTENNVMKIADFGLARD  186 (304)
T ss_pred             EcCCCcEEECCCcccee
Confidence            99999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.49  E-value=2e-14  Score=140.46  Aligned_cols=137  Identities=15%  Similarity=0.104  Sum_probs=107.7

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc--ccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI--TFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~--~~~~~~  435 (499)
                      ++|+..+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|+.++++++||||+++++++...  +....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            6788899999999999999995 469999999997543  23456788999999999999999999877542  223456


Q ss_pred             eeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|+.+++...+...    +.....++.|+++||+|||+      +++|.|+++++++.++++|||++..
T Consensus        85 lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~  156 (334)
T cd07855          85 VVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARG  156 (334)
T ss_pred             EEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEeccccccee
Confidence            67888877654444322    22344556899999999887      7899999999999999999998754

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=2.1e-14  Score=140.07  Aligned_cols=126  Identities=14%  Similarity=0.073  Sum_probs=93.2

Q ss_pred             cccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC---CCCCccccceeEEccccceeeeeeccc
Q 010856          369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI---RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       369 lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l---~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      ||+|+||+||+|+. .+++.||+|++.+..   ......+.+|..++...   +||||+++++++...+  ..++++||+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~--~~~lv~e~~   78 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDS--DLYLVTDYM   78 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCC--eEEEEEcCC
Confidence            69999999999996 468999999997543   12234456677777655   7999999998887643  345567776


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .++ +...+...    ......++.|+++||+|||+      +++|.||+++.++.++++|||++.
T Consensus        79 ~~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~  144 (330)
T cd05586          79 SGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSK  144 (330)
T ss_pred             CCChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCc
Confidence            544 43333222    22334446899999999876      899999999999999999999875

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.49  E-value=4.2e-14  Score=134.37  Aligned_cols=133  Identities=18%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      |+..+.||+|+||.||+|.. .+++.||+|...... ....+.+.+|++++++++||||+++++++...+  ..+.++++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~   83 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT--KLWIIMEY   83 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCC--eEEEEEEe
Confidence            66778899999999999985 468899999986543 233467889999999999999999999887633  45567888


Q ss_pred             cCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.++....+..    .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        84 ~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06641          84 LGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQ  150 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeeccccee
Confidence            86654333221    122233446888999998877      7999999999999999999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.49  E-value=1.8e-14  Score=139.03  Aligned_cols=136  Identities=19%  Similarity=0.188  Sum_probs=101.8

Q ss_pred             hhhcccccccccCCcceEEEEEeC--------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG--------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      .++|.+.+.||+|+||.||+|+..        +...+|+|.++... .....++.+|+++++.+ +||||+++++++...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            367999999999999999999742        23579999997543 23456788999999999 899999999988764


Q ss_pred             ccceeeeeecccCC-Ccccccccc--------------------ccccccccccccccceeecc------CCCcccEEEe
Q 010856          430 TFTVCLCLFHHSSA-SASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      +  ..+++++++.+ ++...+...                    +.....++.|++.||+|||+      +++|.||+++
T Consensus        97 ~--~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~  174 (307)
T cd05098          97 G--PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT  174 (307)
T ss_pred             C--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEc
Confidence            3  34456666654 443333221                    11122346889999998877      7999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      +++.++++|||++..
T Consensus       175 ~~~~~kL~dfg~a~~  189 (307)
T cd05098         175 EDNVMKIADFGLARD  189 (307)
T ss_pred             CCCcEEECCCccccc
Confidence            999999999998753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.49  E-value=2.8e-14  Score=133.94  Aligned_cols=134  Identities=19%  Similarity=0.197  Sum_probs=102.9

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      |...+.||+|+||+||+|... +++.||+|.+....     ....+.+.+|+.++++++||||+++++++...+  ..+.
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--~~~l   79 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREED--NLYI   79 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCC--eEEE
Confidence            667788999999999999965 78999999986543     123467899999999999999999999886633  4455


Q ss_pred             eecccCCCccc-cccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSSASASA-SLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~~~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++|++.++... .+..    .+.....++.|+++|++|||+      +++|.|++++.++.++++|||....+
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~  152 (258)
T cd06632          80 FLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQV  152 (258)
T ss_pred             EEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceec
Confidence            67777654333 2222    122233446789999999976      78999999999999999999987653

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.49  E-value=1.7e-14  Score=138.78  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=103.6

Q ss_pred             HHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      ...++|...+.||+|+||.||+|..      .++..||+|+++... ....+.+.+|+++++++ +||||+++++++...
T Consensus        32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  111 (302)
T cd05055          32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIG  111 (302)
T ss_pred             ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence            3345788999999999999999973      135579999987543 23346789999999999 899999999988764


Q ss_pred             ccceeeeeecccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          430 TFTVCLCLFHHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       430 ~~~~~~~l~~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +  ..+.+++|+.++ +...+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++.
T Consensus       112 ~--~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~  189 (302)
T cd05055         112 G--PILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             C--ceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccc
Confidence            3  345567776544 4333322      122233446789999999887      689999999988899999999886


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       190 ~  190 (302)
T cd05055         190 D  190 (302)
T ss_pred             c
Confidence            3

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.49  E-value=1.8e-14  Score=137.96  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=102.7

Q ss_pred             hhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ++|...+.+|+|+||.||+|+.      .++..+|+|.+........+.+.+|++++++++||||+++++++...+  ..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   82 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD--PL   82 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC--ce
Confidence            4688889999999999999973      235578999887655445577999999999999999999999887633  34


Q ss_pred             eeeecccCCCcc-ccccc--------------------cccccccccccccccceeecc------CCCcccEEEeeCCCe
Q 010856          435 LCLFHHSSASAS-ASLVS--------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGV  487 (499)
Q Consensus       435 ~~l~~~~~~~~~-~~l~~--------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~  487 (499)
                      ..+++++.++.+ +.+..                    .+.....++.|++.|++|||+      +++|.|+++++++.+
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~  162 (291)
T cd05094          83 IMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLV  162 (291)
T ss_pred             EEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcE
Confidence            556777754433 22221                    112233446889999999877      799999999999999


Q ss_pred             EEEEEEEee
Q 010856          488 EVICFVFEI  496 (499)
Q Consensus       488 ~~~~f~~~~  496 (499)
                      +++|||++.
T Consensus       163 ~l~dfg~a~  171 (291)
T cd05094         163 KIGDFGMSR  171 (291)
T ss_pred             EECCCCccc
Confidence            999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.49  E-value=3.3e-14  Score=136.45  Aligned_cols=135  Identities=19%  Similarity=0.232  Sum_probs=107.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ..|+..+.+|.|+||.||+|.. .+++.||+|.+........+.+.+|+++++.++||||+++++++...+  ..+.+++
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e   96 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGD--ELFVVME   96 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCc--eEEEEEE
Confidence            3588889999999999999985 578999999997665555678899999999999999999999887633  4556778


Q ss_pred             ccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.+.....    .+.....++.|++.|++|||+      +++|.|+++++++.++++|||+...
T Consensus        97 ~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~  164 (296)
T cd06655          97 YLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQ  164 (296)
T ss_pred             ecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchh
Confidence            876665443322    222334445788999998876      8999999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.49  E-value=2.5e-14  Score=135.22  Aligned_cols=136  Identities=17%  Similarity=0.199  Sum_probs=103.8

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CC---CEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DR---MEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..+|+..+.+|+|+||.||+|..+ ++   ..+|+|.++... ....+.+.+|++++++++||||+++.+++...+  ..
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   81 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK--PA   81 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCC--Cc
Confidence            356888899999999999999963 33   379999986543 233567899999999999999999999887644  44


Q ss_pred             eeeecccCCCcccccc-c-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLV-S-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~-~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.++|++.++.+.... .     .+.....++.|++.|++|||+      +++|.|+++++++.++++|||+++.
T Consensus        82 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  156 (268)
T cd05063          82 MIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRV  156 (268)
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCcccee
Confidence            5677777665443322 1     112234445788899988766      8999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.49  E-value=2.6e-14  Score=134.91  Aligned_cols=134  Identities=22%  Similarity=0.251  Sum_probs=101.1

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc---------cHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR---------AFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~---------~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      |.....||+|+||.||+|.. .+++.||+|.+......         ..+.+.+|+.++++++||||+++++++...+  
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--   79 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDAD--   79 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCC--
Confidence            66778999999999999985 46889999988654311         1256889999999999999999999887644  


Q ss_pred             eeeeeecccCCCccc-ccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          433 VCLCLFHHSSASASA-SLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~-~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ....+++++.++... .+...    ......++.|++.|++|||+      +++|.|+++++++.++++|||+++.+
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~  156 (267)
T cd06628          80 HLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKL  156 (267)
T ss_pred             ccEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccc
Confidence            333456776554332 22221    22234456889999998876      79999999999999999999987643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.49  E-value=1.7e-14  Score=139.69  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=101.1

Q ss_pred             HhhhcccccccccCCcceEEEEEeC--------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG--------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      ..++|...+.||+|+||.||+|+..        ....+|+|.++... ......+.+|+++++++ +||||+++++++..
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ   89 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence            3467888999999999999999731        24579999987543 23356788999999999 69999999998865


Q ss_pred             cccceeeeeecccCCC-ccccccccc--------------------cccccccccccccceeecc------CCCcccEEE
Q 010856          429 ITFTVCLCLFHHSSAS-ASASLVSSL--------------------TLSRPAKGGGFRGCVLWHV------GVDFAAFVF  481 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~-~~~~l~~~~--------------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~  481 (499)
                      ..  ..+++++|+.++ +...+....                    .....++.|++.||+|||+      +++|.|+++
T Consensus        90 ~~--~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill  167 (314)
T cd05099          90 EG--PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLV  167 (314)
T ss_pred             CC--ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEE
Confidence            33  344567776554 332222111                    1112335789999998877      899999999


Q ss_pred             eeCCCeEEEEEEEeec
Q 010856          482 VLEPGVEVICFVFEIL  497 (499)
Q Consensus       482 ~~~~~~~~~~f~~~~~  497 (499)
                      ++++.++++|||+++.
T Consensus       168 ~~~~~~kL~Dfg~~~~  183 (314)
T cd05099         168 TEDNVMKIADFGLARG  183 (314)
T ss_pred             cCCCcEEEcccccccc
Confidence            9999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.49  E-value=2.4e-14  Score=136.28  Aligned_cols=135  Identities=19%  Similarity=0.182  Sum_probs=101.7

Q ss_pred             hhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|...+.+|+|+||.||+++.      .++..+|+|.+........+.+.+|+++++.++|+||+++++++...+  ..
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   82 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGR--PL   82 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC--ce
Confidence            3567789999999999999973      235689999887655455678999999999999999999999887633  34


Q ss_pred             eeeecccCCC-ccccccc-------------------cccccccccccccccceeecc------CCCcccEEEeeCCCeE
Q 010856          435 LCLFHHSSAS-ASASLVS-------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVE  488 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~-------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~  488 (499)
                      ..+++++.++ +...+..                   .+.....++.|++.|++|||+      +++|.|+++.+++.++
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~k  162 (280)
T cd05092          83 LMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVK  162 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEE
Confidence            4566666544 3322221                   112233445789999998876      8999999999999999


Q ss_pred             EEEEEEeec
Q 010856          489 VICFVFEIL  497 (499)
Q Consensus       489 ~~~f~~~~~  497 (499)
                      ++|||++..
T Consensus       163 L~dfg~~~~  171 (280)
T cd05092         163 IGDFGMSRD  171 (280)
T ss_pred             ECCCCceeE
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.49  E-value=3.4e-14  Score=133.82  Aligned_cols=134  Identities=19%  Similarity=0.200  Sum_probs=105.5

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .|...+.||+|+||.||+|.. .+++.||+|.++....  ...+.+.+|+.++++++|+||+++++++...  ...+.++
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~lv~   78 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHR--EKVYIFM   78 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecC--CEEEEEE
Confidence            377889999999999999996 4788999999976553  2567899999999999999999999987653  3455677


Q ss_pred             cccCCCcccccc-c----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLV-S----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~-~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++....+. .    .+.....++.|+++|++|||+      +++|.|+++++++.++++|||++..
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~  148 (264)
T cd06626          79 EYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVK  148 (264)
T ss_pred             ecCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccc
Confidence            777655443322 1    222334456899999999887      7899999999999999999998754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.49  E-value=1.5e-14  Score=138.56  Aligned_cols=139  Identities=19%  Similarity=0.178  Sum_probs=102.9

Q ss_pred             HHHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      ....++|+..+.||+|+||.||+|...      ....+|+|.+.... ......+.+|++++.++ +||||+++++++..
T Consensus         8 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   87 (293)
T cd05053           8 ELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ   87 (293)
T ss_pred             ccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC
Confidence            344567888999999999999999853      23679999987543 23345688999999999 89999999998876


Q ss_pred             cccceeeeeecccCC-Cccccccc--------------------cccccccccccccccceeecc------CCCcccEEE
Q 010856          429 ITFTVCLCLFHHSSA-SASASLVS--------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF  481 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~-~~~~~l~~--------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~  481 (499)
                      .+  ..+++++|..+ .+...+..                    .+.....++.|++.|++|||+      +++|.|+++
T Consensus        88 ~~--~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~  165 (293)
T cd05053          88 EG--PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLV  165 (293)
T ss_pred             CC--CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEE
Confidence            33  34556666544 43322221                    111123346899999999876      799999999


Q ss_pred             eeCCCeEEEEEEEeec
Q 010856          482 VLEPGVEVICFVFEIL  497 (499)
Q Consensus       482 ~~~~~~~~~~f~~~~~  497 (499)
                      .+++.++++|||+++.
T Consensus       166 ~~~~~~kL~Dfg~~~~  181 (293)
T cd05053         166 TEDHVMKIADFGLARD  181 (293)
T ss_pred             cCCCeEEeCccccccc
Confidence            9999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.49  E-value=1.8e-14  Score=141.23  Aligned_cols=138  Identities=17%  Similarity=0.133  Sum_probs=106.5

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc---------
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---------  430 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---------  430 (499)
                      ++|...+.||+|+||.||+|+. .+|+.||+|.+........+.+.+|++++++++||||+++++++....         
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5688899999999999999995 578999999997665556678899999999999999999998765421         


Q ss_pred             ---cceeeeeecccCCCcccccc---ccccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeec
Q 010856          431 ---FTVCLCLFHHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEIL  497 (499)
Q Consensus       431 ---~~~~~~l~~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~  497 (499)
                         +...+++++++.+++...+.   ..+...+.++.|++.||+|||+      +++|.|++++.++ .++++|||.+..
T Consensus        85 ~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~  164 (342)
T cd07854          85 LTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARI  164 (342)
T ss_pred             ccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCccccee
Confidence               12345678888775543322   2233445556899999998877      7899999997554 579999998865


Q ss_pred             c
Q 010856          498 L  498 (499)
Q Consensus       498 ~  498 (499)
                      +
T Consensus       165 ~  165 (342)
T cd07854         165 V  165 (342)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.49  E-value=2.5e-14  Score=134.70  Aligned_cols=128  Identities=11%  Similarity=0.067  Sum_probs=95.2

Q ss_pred             cccccCCcceEEEEEeCC-------------CCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          367 NLIGKGGFGSVYKARLGD-------------RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~-------------~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      +.||+|+||.||+|+..+             ...+|+|.++.........+.+|+.+++.++||||+++++++....  .
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~--~   78 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDV--E   78 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--C
Confidence            358999999999998421             2358888876654444567889999999999999999999987633  3


Q ss_pred             eeeeecccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCC-------eEEEEEEE
Q 010856          434 CLCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG-------VEVICFVF  494 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~-------~~~~~f~~  494 (499)
                      .+++++++.++..+....      .+.....++.|+++||+|||+      +++|.|+++..++.       ++++|||+
T Consensus        79 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~  158 (262)
T cd05077          79 NIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGI  158 (262)
T ss_pred             CEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCC
Confidence            456778887664433221      222334557899999999887      79999999976543       89999998


Q ss_pred             ee
Q 010856          495 EI  496 (499)
Q Consensus       495 ~~  496 (499)
                      +.
T Consensus       159 ~~  160 (262)
T cd05077         159 PI  160 (262)
T ss_pred             Cc
Confidence            65

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.49  E-value=2.4e-14  Score=135.44  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             hhcccccccccCCcceEEEEEeCC----CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD----RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .+|...+.+|+|+||.||+|...+    ...||+|...... ....+.+.+|+.++++++||||+++++++...  .. +
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~~-~   82 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITEN--PV-W   82 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCC--Cc-E
Confidence            457788999999999999998532    3468999886554 33456899999999999999999999987652  22 3


Q ss_pred             eeecccC-CCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSS-ASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~-~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+++++. +++.+.+..     .+.....++.|++.|++|||+      +++|.|++++.++.++++|||++..
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~  156 (270)
T cd05056          83 IVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRY  156 (270)
T ss_pred             EEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeee
Confidence            4556664 444333322     122233345789999988877      7999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.48  E-value=1.4e-15  Score=135.78  Aligned_cols=134  Identities=15%  Similarity=0.183  Sum_probs=105.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +.|.+..++|+|+||.||++.+ .+|..+|+|.+...  .+.+++..|+.||.+.+.|.+|+.||.|+.  ....++++|
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK--~sDLWIVME  108 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFK--HSDLWIVME  108 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhcc--CCceEeehh
Confidence            3467778999999999999996 57999999998654  457889999999999999999999998876  445677888


Q ss_pred             ccCCCccccccc--ccccccc----ccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVS--SLTLSRP----AKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~--~~~~~~~----~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |++.+....+..  ..+..++    +.+..++||+|||.      ++|..|||++.++-++++|||.+--|
T Consensus       109 YCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQL  179 (502)
T KOG0574|consen  109 YCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQL  179 (502)
T ss_pred             hcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchh
Confidence            888776544322  1122221    12566789999865      89999999999999999999987543

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.48  E-value=2.8e-14  Score=135.59  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=104.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .|+..+.||+|+||.||+|.. .+++.||+|.++... ....+.+.+|++++++++||||+++++++....  ..+.++|
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   82 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGT--KLWIIME   82 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCC--ceEEEEE
Confidence            366778899999999999985 468899999987543 334567899999999999999999999887633  4556788


Q ss_pred             ccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.......    .+.....++.|+++|++|||+      +++|.|+++.+++.++++|||++..
T Consensus        83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06642          83 YLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             ccCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEcccccccc
Confidence            887654333221    222334456899999999986      7899999999999999999998754

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.48  E-value=2.3e-14  Score=134.48  Aligned_cols=129  Identities=18%  Similarity=0.195  Sum_probs=97.8

Q ss_pred             cccccCCcceEEEEEeC--CC--CEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG--DR--MEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~--~~--~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||.||+|...  .+  ..||+|.+..... ...+.+.+|++++++++||||+++++++..   ...+.+++++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~~~v~e~~   77 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT---HPLMMVTELA   77 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC---CeEEEEEEec
Confidence            46899999999999863  23  3699999977654 556789999999999999999999998876   2344566666


Q ss_pred             C-CCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          442 S-ASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       442 ~-~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      . +.+...+...      +.....++.|++.||+|||+      +++|.|+++..++.++++|||++..+
T Consensus        78 ~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~  147 (257)
T cd05040          78 PLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRAL  147 (257)
T ss_pred             CCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccc
Confidence            4 4444333222      12233345789999988776      89999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.48  E-value=1.8e-15  Score=146.21  Aligned_cols=170  Identities=31%  Similarity=0.504  Sum_probs=84.7

Q ss_pred             CEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecccc
Q 010856           58 TIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSN  137 (499)
Q Consensus        58 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  137 (499)
                      ...||+.|++. ..|..+..+..|+.+.|..|.+. .+|..+.++..|+.|||+.|+++ ..|..+..+ -|+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence            34455555554 44444555555555555555554 44455555555555555555555 333333332 2555555555


Q ss_pred             CCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcc
Q 010856          138 KLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS  217 (499)
Q Consensus       138 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  217 (499)
                      +++.+|..++..++|..||.+.|.+.. .|..+..+.+|+.|.+..|++.. .|..+.. -.|..||++.|++. .+|-.
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchh
Confidence            555555555555555555555555543 33444455555555555555542 2333332 23445555555555 44445


Q ss_pred             ccCCCCCCEEeCCCCcCC
Q 010856          218 FGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       218 l~~l~~L~~L~l~~N~l~  235 (499)
                      |..|..|++|-|.+|.+.
T Consensus       230 fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhheeeeeccCCCC
Confidence            555555555555555554

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.48  E-value=6.8e-15  Score=124.78  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHH-HhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEM-MKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~i-l~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++......||+|+||.|-+-++ .+|+..|+|++...- .+..++..+|+.+ ++..+.|.+|++||.+..  ....++-
T Consensus        46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~r--egdvwIc  123 (282)
T KOG0984|consen   46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFR--EGDVWIC  123 (282)
T ss_pred             hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhc--cccEEEe
Confidence            3344557799999999998885 589999999997654 3445678889987 455689999999998765  2233445


Q ss_pred             ecccCCCccccc--------cccccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSSASASASL--------VSSLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~~~~~l--------~~~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +|.|..++-...        ...+...-++|..+.+||.|||+       ++||.|+|.+.+++||+||||++-.|
T Consensus       124 ME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L  199 (282)
T KOG0984|consen  124 MELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYL  199 (282)
T ss_pred             HHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceee
Confidence            666654432221        12333445567788899988765       89999999999999999999998654

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.48  E-value=2.8e-14  Score=139.61  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=106.9

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc---ccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---FTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---~~~~  434 (499)
                      ..|...+.+|+|+||.||+|+. .+++.||+|.+....  ......+.+|+.+++.++||||+++++++....   +...
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            4688899999999999999995 578999999987532  233556789999999999999999999876532   1235


Q ss_pred             eeeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++++++++...+...    ......++.|++.||+|||+      +++|.|++++.++.++++|||++..
T Consensus        85 ~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  157 (337)
T cd07858          85 YIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLART  157 (337)
T ss_pred             EEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccc
Confidence            667888877665443322    22334456899999998877      7899999999999999999998764

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.48  E-value=2.8e-14  Score=134.77  Aligned_cols=134  Identities=18%  Similarity=0.193  Sum_probs=101.3

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC------ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG------RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      +|+..+.||+|+||.||+|.. .+++.||+|.+.....      ...+.+.+|++++++++|+||+++++++...+  ..
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~   78 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDS--HF   78 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCC--eE
Confidence            377788999999999999985 6789999999865331      12467899999999999999999999987643  44


Q ss_pred             eeeecccCCCccc-cccc----cccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeec
Q 010856          435 LCLFHHSSASASA-SLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~  497 (499)
                      .++++++.|+... .+..    .+.....++.|++.||+|||+      +++|.|++++.++ .++++|||+...
T Consensus        79 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~  153 (268)
T cd06630          79 NLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAAR  153 (268)
T ss_pred             EEEEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccc
Confidence            5566776655433 2222    122334446899999998877      7999999997665 589999998653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.48  E-value=1.1e-14  Score=149.37  Aligned_cols=137  Identities=13%  Similarity=0.106  Sum_probs=95.7

Q ss_pred             HhhhcccccccccCCcceEEEEEeC--CCCEEEEEEee--------------cc---CCccHHHHHHHHHHHhcCCCCCc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG--DRMEVAVKVFN--------------LQ---CGRAFESFDVECEMMKNIRHRNL  419 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~--~~~~vavK~~~--------------~~---~~~~~~~~~~E~~il~~l~H~ni  419 (499)
                      ..++|.+.+.||+|+||+||+|..+  ++...+.|.+.              +.   .......+.+|++++++++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            4568999999999999999998753  23333333111              00   01224568899999999999999


Q ss_pred             cccceeEEccccceeeeeecccCCCcccccccc---------ccccccccccccccceeecc------CCCcccEEEeeC
Q 010856          420 IKILHGVAVITFTVCLCLFHHSSASASASLVSS---------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE  484 (499)
Q Consensus       420 v~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~---------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~  484 (499)
                      |++++++...+.  .++++++..+++...+...         ....+.++.|++.||+|||+      ++||.||+++.+
T Consensus       226 v~l~~~~~~~~~--~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~  303 (501)
T PHA03210        226 LKIEEILRSEAN--TYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCD  303 (501)
T ss_pred             CcEeEEEEECCe--eEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCC
Confidence            999998876443  3344555555443332111         11123456899999998876      899999999999


Q ss_pred             CCeEEEEEEEeec
Q 010856          485 PGVEVICFVFEIL  497 (499)
Q Consensus       485 ~~~~~~~f~~~~~  497 (499)
                      +.++++|||++..
T Consensus       304 ~~vkL~DFGla~~  316 (501)
T PHA03210        304 GKIVLGDFGTAMP  316 (501)
T ss_pred             CCEEEEeCCCcee
Confidence            9999999999864

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.48  E-value=3.7e-14  Score=133.04  Aligned_cols=134  Identities=17%  Similarity=0.138  Sum_probs=102.5

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .+|+..+.+|+|+||.||+|...++..+|+|.+.... ....++.+|++++++++||||+++++++....  ..+.++++
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e~   80 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGA-MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERS--PICLVFEF   80 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCC-CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCC--ceEEEEEc
Confidence            4678889999999999999997667899999886543 23467999999999999999999998876533  34556777


Q ss_pred             cCCCccc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSASASA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~~~~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.++.+. .+..     .+.....++.|++.|++|||+      +++|.|++++.++.++++|||+++.
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  149 (256)
T cd05112          81 MEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRF  149 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceee
Confidence            7655433 2221     112233445788889888775      8999999999899999999998753

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=7.3e-15  Score=137.81  Aligned_cols=137  Identities=18%  Similarity=0.185  Sum_probs=101.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-------CccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-------GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-------~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      ...|-+...+|+|+|+.||+|.. ...+.||||+-...+       ....+...+|-+|.+.++||.||++|+++.....
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd  541 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD  541 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc
Confidence            45677889999999999999994 567789999874332       1224667899999999999999999998854222


Q ss_pred             ceeeeeecccCCCcccc-ccc----cccccccccccccccceeecc--------CCCcccEEEeeC---CCeEEEEEEEe
Q 010856          432 TVCLCLFHHSSASASAS-LVS----SLTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVLE---PGVEVICFVFE  495 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~-l~~----~~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~~---~~~~~~~f~~~  495 (499)
                       .+-.+.||+.|..+++ +..    .+...+.++.||+.||.||.+        +.||.|||+++.   +..+|.|||++
T Consensus       542 -sFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLS  620 (775)
T KOG1151|consen  542 -SFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLS  620 (775)
T ss_pred             -cceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchh
Confidence             3334555555544443 332    334466677899999999865        888999988764   68899999998


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       621 KI  622 (775)
T KOG1151|consen  621 KI  622 (775)
T ss_pred             hh
Confidence            64

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.48  E-value=2.4e-14  Score=138.44  Aligned_cols=138  Identities=16%  Similarity=0.120  Sum_probs=106.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccc------
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVIT------  430 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~------  430 (499)
                      +++|...+.||+|+||.||+|+. .+++.||+|++.....  .....+.+|++++++++||||+++++++....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            57899999999999999999996 4689999999865432  22356789999999999999999998875432      


Q ss_pred             cceeeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FTVCLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ....+.+++|+.+++...+..     .+.....++.|+++||+|||+      +++|.||++++++.++++|||+++.
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchh
Confidence            123455778877665443322     223344456899999999877      7999999999999999999998864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.48  E-value=4.2e-14  Score=132.23  Aligned_cols=129  Identities=19%  Similarity=0.168  Sum_probs=98.9

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC-
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS-  444 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~-  444 (499)
                      +.||+|+||.||+|...+++.||+|.+...... ..+.+.+|++++++++||||+++++++...+  ..+.+++++.|+ 
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~e~~~~~~   78 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQ--PIYIVMELVPGGS   78 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC--CeEEEEEcCCCCc
Confidence            468999999999999766999999998765433 4567999999999999999999999887643  344567777544 


Q ss_pred             cccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          445 ASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       445 ~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+.+...     ......++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        79 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~  142 (251)
T cd05041          79 LLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRE  142 (251)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeecccccc
Confidence            33333221     11223345788889988876      8999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.48  E-value=6.2e-15  Score=138.83  Aligned_cols=137  Identities=11%  Similarity=0.093  Sum_probs=105.1

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ....|..-+++|+|+||.||.|+. .+|+.||+|.+.+..   .+......+|..|+.+++.+.||.+-.+|.+.+..  
T Consensus       183 t~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~L--  260 (591)
T KOG0986|consen  183 TKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDAL--  260 (591)
T ss_pred             cccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCce--
Confidence            345577889999999999999996 479999999996653   23345578999999999999999988777765432  


Q ss_pred             eeeecccCCC-ccccccccc------cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSAS-ASASLVSSL------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~~~------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      -.++..|+|+ +...+....      ....-.|.+|+.||++||+      |+||+|||+++++.|.|+|.|+++-
T Consensus       261 ClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAve  336 (591)
T KOG0986|consen  261 CLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVE  336 (591)
T ss_pred             EEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEe
Confidence            2345666444 433333222      2233346899999999998      8999999999999999999999874

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.48  E-value=5.4e-14  Score=133.60  Aligned_cols=135  Identities=17%  Similarity=0.179  Sum_probs=104.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++...  ...++++
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~lv~   81 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKG--TKLWIIM   81 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC--CEEEEEE
Confidence            3477778999999999999996 468899999987543 33456789999999999999999999988763  3556678


Q ss_pred             cccCCCcccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |++.|+..........    ....++.|++.|++|||+      +++|.|+++++++.++++|||.+..
T Consensus        82 e~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~  150 (277)
T cd06640          82 EYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             ecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEccccccee
Confidence            8886654333222111    223445788899988876      7899999999999999999998854

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.48  E-value=3.4e-14  Score=136.97  Aligned_cols=133  Identities=15%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|...+.+|+|+||.||+++. .+++.||+|.+....   ....+.+.+|+++++.++||||+++++.+...+  ...++
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~lv   79 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKR--HLCMV   79 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCC--EEEEE
Confidence            588889999999999999996 468899999987654   223457889999999999999999998887633  44567


Q ss_pred             ecccCCCcccc-cccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSASASAS-LVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~~~~~~-l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +|++.|+.+.. +...    +.....++.|++.|++|||+      +++|.|++++.++.++++|||+++
T Consensus        80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~  149 (305)
T cd05609          80 MEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSK  149 (305)
T ss_pred             EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCcc
Confidence            77776654332 2221    12233445788899998877      789999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.48  E-value=5e-14  Score=134.97  Aligned_cols=135  Identities=19%  Similarity=0.215  Sum_probs=105.7

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ++|...+.+|+|+||.||+|.. .++..||+|.+........+.+.+|+.++++++||||+++++++...+  ..+.+++
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--~~~lv~e   96 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGD--ELWVVME   96 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCC--cEEEEEe
Confidence            5788889999999999999985 468899999987555455677899999999999999999999887643  3455777


Q ss_pred             ccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.+.....    .+.....++.|++.|++|||+      +++|.|+++.+++.++++|||++..
T Consensus        97 ~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~  164 (293)
T cd06647          97 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  164 (293)
T ss_pred             cCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceec
Confidence            776554333221    122234456788999988887      7999999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.48  E-value=4.4e-14  Score=133.54  Aligned_cols=127  Identities=17%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             ccccCCcceEEEEEeCC---CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCC
Q 010856          368 LIGKGGFGSVYKARLGD---RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSA  443 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~  443 (499)
                      .||+|+||.||+|+..+   ...+++|.+.... ....+.+.+|+.+++.++||||+++++++....  ..++++||+.+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~~   79 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAI--PYLLVFEYCEL   79 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCC--ccEEEEecCCC
Confidence            58999999999998533   2346677665443 234568999999999999999999999887633  34556777654


Q ss_pred             -Ccccccccc--------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          444 -SASASLVSS--------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       444 -~~~~~l~~~--------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                       ++...+...        ......++.|+++||+|||+      +++|.|++++.++.++++|||++.
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~  147 (268)
T cd05086          80 GDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGP  147 (268)
T ss_pred             CcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEeccccccc
Confidence             443333221        11123446789999998887      799999999999999999999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.48  E-value=3.6e-14  Score=134.66  Aligned_cols=134  Identities=15%  Similarity=0.166  Sum_probs=101.2

Q ss_pred             hhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .+|.....+|+|+||.||+|+.+      +.+.||+|.+...... ..+.+.+|++++++++||||+++++++...+  .
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~   82 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE--P   82 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC--c
Confidence            56888899999999999999853      2467999988655433 3567999999999999999999999876533  3


Q ss_pred             eeeeecccCC-Ccccccccc-------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEE
Q 010856          434 CLCLFHHSSA-SASASLVSS-------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~~-------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~  493 (499)
                      .+.+++++.+ .+.+.+...             +.....++.|++.||+|||+      +++|.|+++..++.+++.|||
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~  162 (275)
T cd05046          83 HYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLS  162 (275)
T ss_pred             ceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccc
Confidence            3456666654 443333221             11223345789999999877      799999999999999999999


Q ss_pred             Eee
Q 010856          494 FEI  496 (499)
Q Consensus       494 ~~~  496 (499)
                      +..
T Consensus       163 ~~~  165 (275)
T cd05046         163 LSK  165 (275)
T ss_pred             ccc
Confidence            864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.48  E-value=4.2e-14  Score=134.63  Aligned_cols=134  Identities=11%  Similarity=0.025  Sum_probs=103.2

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeeeec
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      |+..+.+|+|+||.||+|.. .+++.||+|+++... ........+|+.++.++. ||||+++++++...+....+.++|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            55678899999999999995 478999999986543 222234567999999885 999999999988753344566788


Q ss_pred             ccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+++.+.+..     .+.....++.|++.||+|||+      +++|.|+++++ +.++++|||++..
T Consensus        81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~  148 (282)
T cd07831          81 LMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRG  148 (282)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccc
Confidence            888776655432     222344556899999999877      78999999988 9999999998764

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.48  E-value=3.3e-14  Score=133.77  Aligned_cols=135  Identities=19%  Similarity=0.220  Sum_probs=104.0

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|...+.+|+|+||.||+|...++..+|+|.+.... ...+.+.+|++++++++|+||+++++++..   ...+.+++
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---~~~~~v~e   80 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK---EPIYIITE   80 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcC---CCeEEEEE
Confidence            35688899999999999999997677789999886543 235678999999999999999999888765   23455777


Q ss_pred             ccCC-Ccccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++.+ ++.+.+...      +.....++.|++.|++|||+      +++|.|++++.++.++++|||.+..+
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  152 (260)
T cd05073          81 FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVI  152 (260)
T ss_pred             eCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeec
Confidence            7754 443333221      12233345789999998876      89999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.48  E-value=3e-14  Score=135.38  Aligned_cols=137  Identities=16%  Similarity=0.221  Sum_probs=100.8

Q ss_pred             HhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      ..++|...+.||+|+||.||+|...      .+..||+|.+.... ......|.+|+.++++++|+||+++++++...+ 
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-   82 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL-   82 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-
Confidence            3467889999999999999999963      35689999886443 223456999999999999999999999887643 


Q ss_pred             ceeeeeecccCC-Ccccccccc-----------ccccccccccccccceeecc------CCCcccEEEeeCC---CeEEE
Q 010856          432 TVCLCLFHHSSA-SASASLVSS-----------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVI  490 (499)
Q Consensus       432 ~~~~~l~~~~~~-~~~~~l~~~-----------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~  490 (499)
                       ..+.+++++.| .+...+...           +.....++.||+.|++|||+      +++|.||++++++   .++++
T Consensus        83 -~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~  161 (277)
T cd05036          83 -PRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIA  161 (277)
T ss_pred             -CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEec
Confidence             23456666644 443333221           11123346789999998776      7999999997654   58999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||++..
T Consensus       162 dfg~~~~  168 (277)
T cd05036         162 DFGMARD  168 (277)
T ss_pred             cCccccc
Confidence            9998764

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.47  E-value=3.3e-14  Score=137.69  Aligned_cols=137  Identities=14%  Similarity=0.141  Sum_probs=102.3

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--------CccHHHHHHHHHHHhcCC---CCCcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--------GRAFESFDVECEMMKNIR---HRNLIKILHG  425 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~il~~l~---H~niv~l~~~  425 (499)
                      ....+|+..+.+|+|+||+|+.|.++ ....|.+|.+.+.+        .+....+-.||.||..++   |+||++++++
T Consensus       558 ~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf  637 (772)
T KOG1152|consen  558 KKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF  637 (772)
T ss_pred             cccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe
Confidence            44567888999999999999999975 46679999987653        122334678999999997   9999999999


Q ss_pred             EEccccceeeeeeccc--CCCcccccccccccc----ccccccccccceeecc------CCCcccEEEeeCCCeEEEEEE
Q 010856          426 VAVITFTVCLCLFHHS--SASASASLVSSLTLS----RPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~----~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~  493 (499)
                      |.+.+|.  +.+.+--  +=++++.+....++.    ..+..||+.|+++||+      ++|-+|++++.++-|++||||
T Consensus       638 FEddd~y--yl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfg  715 (772)
T KOG1152|consen  638 FEDDDYY--YLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFG  715 (772)
T ss_pred             eecCCee--EEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeecc
Confidence            9886543  2233322  223444444433333    3344899999999977      789999999999999999999


Q ss_pred             Eee
Q 010856          494 FEI  496 (499)
Q Consensus       494 ~~~  496 (499)
                      -+-
T Consensus       716 saa  718 (772)
T KOG1152|consen  716 SAA  718 (772)
T ss_pred             chh
Confidence            654

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.47  E-value=4.6e-14  Score=133.88  Aligned_cols=134  Identities=21%  Similarity=0.181  Sum_probs=104.7

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|...+.+|.|+||.||+|+. .+++.||+|.+.... ......+.+|+++++.++||||+++++++...  ...+++++
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~~v~e   79 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKG--SKLWIIME   79 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEEC--CeEEEEEE
Confidence            577889999999999999996 468999999997553 33456789999999999999999999988763  34455677


Q ss_pred             ccCCC-ccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSAS-ASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~-~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++ +.+.+..   .+.....++.|++.|++|||+      +++|.|+++++++.++++|||.+..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  147 (274)
T cd06609          80 YCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQ  147 (274)
T ss_pred             eeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccccccee
Confidence            77554 3333222   223344556899999998877      7999999999999999999998764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.47  E-value=2.7e-14  Score=134.11  Aligned_cols=127  Identities=15%  Similarity=0.079  Sum_probs=94.8

Q ss_pred             cccccCCcceEEEEEeCC-C----------CEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          367 NLIGKGGFGSVYKARLGD-R----------MEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~-~----------~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      +.||+|+||.||+|..++ +          ..+++|.+...... ...+.+|+.+++.++||||+++++++.. +  ..+
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~--~~~   76 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-D--ENI   76 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-C--CcE
Confidence            368999999999999643 3          24778877544332 6789999999999999999999998876 2  234


Q ss_pred             eeecccCCCccc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCC-------CeEEEEEEEee
Q 010856          436 CLFHHSSASASA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-------GVEVICFVFEI  496 (499)
Q Consensus       436 ~l~~~~~~~~~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-------~~~~~~f~~~~  496 (499)
                      ++++++.++.+. .+..     .......++.|++.||+|||+      +++|.|+++..++       .++++|||++.
T Consensus        77 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~  156 (259)
T cd05037          77 MVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI  156 (259)
T ss_pred             EEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccc
Confidence            567777655433 3222     122234446899999999887      7999999998776       69999999876


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       157 ~  157 (259)
T cd05037         157 T  157 (259)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.47  E-value=3.6e-14  Score=125.88  Aligned_cols=126  Identities=11%  Similarity=0.032  Sum_probs=85.8

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCc--c-------H-----------------HHHHHHHHHHhcCCCCCc
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR--A-------F-----------------ESFDVECEMMKNIRHRNL  419 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~--~-------~-----------------~~~~~E~~il~~l~H~ni  419 (499)
                      ...||+|+||.||+|..++|+.||+|+++.....  .       .                 ....+|++++.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3579999999999999878999999999764311  1       1                 122459999999988887


Q ss_pred             cccceeEEccccceeeeeecccCCCccccc-cccc----cccccccccccccceee-cc------CCCcccEEEeeCCCe
Q 010856          420 IKILHGVAVITFTVCLCLFHHSSASASASL-VSSL----TLSRPAKGGGFRGCVLW-HV------GVDFAAFVFVLEPGV  487 (499)
Q Consensus       420 v~l~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~----~~~~~~~~~i~~gl~yL-H~------~~~p~~~l~~~~~~~  487 (499)
                      .....+...    ..++++|+++|+..... ....    .....++.|++.+|+|+ |+      |+||.|++++ ++.+
T Consensus        82 ~~p~~~~~~----~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v  156 (190)
T cd05147          82 PCPEPILLK----SHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKL  156 (190)
T ss_pred             CCCcEEEec----CCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcE
Confidence            543322211    22467888876533221 1111    12333456777777776 34      8999999997 5889


Q ss_pred             EEEEEEEee
Q 010856          488 EVICFVFEI  496 (499)
Q Consensus       488 ~~~~f~~~~  496 (499)
                      ++||||++.
T Consensus       157 ~LiDFG~a~  165 (190)
T cd05147         157 YIIDVSQSV  165 (190)
T ss_pred             EEEEccccc
Confidence            999999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.47  E-value=2.6e-14  Score=139.72  Aligned_cols=136  Identities=19%  Similarity=0.182  Sum_probs=100.3

Q ss_pred             hhhcccccccccCCcceEEEEEeC--------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG--------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      ...|.+.+.||+|+||.||+|+..        .+..||+|.++... ....+++.+|+++++++ +||||+++++++...
T Consensus        11 ~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (334)
T cd05100          11 RTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   90 (334)
T ss_pred             HhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccC
Confidence            346888999999999999999741        12368999886543 33456799999999999 899999999988763


Q ss_pred             ccceeeeeecccCC-Cccccccccc--------------------cccccccccccccceeecc------CCCcccEEEe
Q 010856          430 TFTVCLCLFHHSSA-SASASLVSSL--------------------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~~~--------------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      +  ..+++++++.+ .+...+....                    .....++.|+++||+|||+      +++|.||++.
T Consensus        91 ~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~  168 (334)
T cd05100          91 G--PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVT  168 (334)
T ss_pred             C--ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEc
Confidence            3  34456666654 4333322110                    1112245789999998876      8999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||+++.
T Consensus       169 ~~~~~kL~Dfg~~~~  183 (334)
T cd05100         169 EDNVMKIADFGLARD  183 (334)
T ss_pred             CCCcEEECCccccee
Confidence            999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.47  E-value=3.6e-14  Score=133.29  Aligned_cols=134  Identities=14%  Similarity=0.081  Sum_probs=103.7

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|...+.||+|+||.||+|... +++.||+|.+.+..   ....+.+.+|++++++++||||+++++++...+  ..+.+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   78 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEE--NMYLV   78 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCC--eEEEE
Confidence            4778899999999999999964 68999999997643   234578999999999999999999998876533  44556


Q ss_pred             ecccCCCcc-cccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASAS-ASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~-~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.|+.+ ..+...    ......++.|+++||+|||+      +++|.|+++++++.++++|||+...
T Consensus        79 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~  149 (258)
T cd05578          79 VDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATK  149 (258)
T ss_pred             EeCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccc
Confidence            777755433 233222    12233445789999998877      7999999999999999999998754

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.47  E-value=2.4e-14  Score=137.47  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=98.5

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCC--EEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRM--EVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~--~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|+..+.||+|+||.||+|..+ ++.  .+|+|.++... ....+.+.+|+++++++ +||||+++++++....  ..+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~~~   79 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRG--YLY   79 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCC--cce
Confidence            46888899999999999999864 343  47888886432 33456789999999999 7999999999876533  234


Q ss_pred             eeecccC-CCcccccccc--------------------ccccccccccccccceeecc------CCCcccEEEeeCCCeE
Q 010856          436 CLFHHSS-ASASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVE  488 (499)
Q Consensus       436 ~l~~~~~-~~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~  488 (499)
                      .+++++. +.+.+.+...                    +.....++.|++.|++|||+      +++|.|+++++++.++
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~k  159 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASK  159 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEE
Confidence            4556654 4443333211                    11223445789999998877      8999999999999999


Q ss_pred             EEEEEEee
Q 010856          489 VICFVFEI  496 (499)
Q Consensus       489 ~~~f~~~~  496 (499)
                      ++|||++.
T Consensus       160 l~dfg~~~  167 (297)
T cd05089         160 IADFGLSR  167 (297)
T ss_pred             ECCcCCCc
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.47  E-value=5.7e-14  Score=136.16  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=102.5

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +|+..+.||+|+||.||+|... +++.||+|.+.....   ...+.+.+|+++++.++||||+++++.+...+  ..+++
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv   79 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTET--YLCLV   79 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCC--EEEEE
Confidence            5888899999999999999964 589999999976542   24567899999999999999999998886633  34556


Q ss_pred             ecccCCCcccc-ccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSASASAS-LVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~~~~~~-l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++..|+.+.. +..      .+.....++.|++.||+|||+      +++|.|+++..++.++++|||++.
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  151 (316)
T cd05574          80 MDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSK  151 (316)
T ss_pred             EEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhh
Confidence            67665543332 221      112233445789999998866      799999999999999999999865

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.47  E-value=3.9e-14  Score=137.99  Aligned_cols=129  Identities=15%  Similarity=0.097  Sum_probs=97.6

Q ss_pred             cccccccC--CcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          365 ENNLIGKG--GFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       365 ~~~~lg~G--~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +.++||+|  +|++||++.. .+|+.||+|+++....  ...+.+.+|+++++.++||||+++++++...+  ..+++++
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~--~~~lv~e   79 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--ELWVVTS   79 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECC--EEEEEEe
Confidence            35789999  6789999985 5799999999976432  23456778999999999999999999987644  3455777


Q ss_pred             ccCCCcccc-ccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          440 HSSASASAS-LVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       440 ~~~~~~~~~-l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      |+.++.... +..      .+.....++.|++.||+|||+      +++|.||++..++.++++||+..
T Consensus        80 ~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~  148 (327)
T cd08227          80 FMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSN  148 (327)
T ss_pred             ccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchh
Confidence            776543332 211      122234456899999999877      79999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.47  E-value=5.1e-14  Score=134.17  Aligned_cols=133  Identities=20%  Similarity=0.216  Sum_probs=103.7

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      |+..+.+|+|++|.||+|.. .+|+.||+|++....  ....+.+.+|++++++++|||++++++++...  ...+++++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~--~~~~iv~e   78 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSE--NKLYLVFE   78 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccC--CeEEEEEe
Confidence            55678899999999999996 479999999997543  23346788999999999999999999998763  34456777


Q ss_pred             ccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+.+...+..      .+.....++.|+++||+|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~  148 (283)
T cd07835          79 FLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARA  148 (283)
T ss_pred             ccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccc
Confidence            777655443322      122334456889999988877      7899999999999999999998753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.47  E-value=3.9e-14  Score=135.64  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=103.4

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      |.....||+|+||.||++.. .++..||+|.+........+.+.+|+.+++.++||||+++++.+...+  ..++++|++
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--~~~lv~e~~  101 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGD--ELWVVMEFL  101 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCC--eEEEEEeCC
Confidence            33346799999999999985 468899999987655455677999999999999999999999887643  445678888


Q ss_pred             CCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .++....+..    .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++.
T Consensus       102 ~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~  166 (292)
T cd06658         102 EGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCA  166 (292)
T ss_pred             CCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchh
Confidence            7665443321    222334456889999999865      899999999999999999999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.46  E-value=1e-14  Score=128.37  Aligned_cols=129  Identities=16%  Similarity=0.077  Sum_probs=95.1

Q ss_pred             ccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHHH-HhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          366 NNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEM-MKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~i-l~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      ...||.|+||+|++-.. +.|+..|||++..... +..+++..|.+. ++.-+.||||++||+++...  ..++-+|.|.
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EG--dcWiCMELMd  146 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEG--DCWICMELMD  146 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCC--ceeeeHHHHh
Confidence            36799999999999985 5799999999987653 556788899875 66668999999999876622  2333456665


Q ss_pred             CCcccc---------ccccccccccccccccccceee-------ccCCCcccEEEeeCCCeEEEEEEEee
Q 010856          443 ASASAS---------LVSSLTLSRPAKGGGFRGCVLW-------HVGVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       443 ~~~~~~---------l~~~~~~~~~~~~~i~~gl~yL-------H~~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      -++-..         -+..+.....++...+.||.||       |+++||.|||++.++.||+||||+.-
T Consensus       147 ~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcG  216 (361)
T KOG1006|consen  147 ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICG  216 (361)
T ss_pred             hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchH
Confidence            432111         1123334444455667788775       88999999999999999999999864

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.46  E-value=6.7e-14  Score=131.28  Aligned_cols=135  Identities=12%  Similarity=0.103  Sum_probs=104.1

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|+||.+|.++. .+|+.||+|.+....  ....+++.+|++++++++||||+++++++...+  ..+.++
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~   78 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENG--NLYIVM   78 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCC--eEEEEE
Confidence            477889999999999999995 578999999987542  234567899999999999999999999886633  445567


Q ss_pred             cccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++.+ .+...+..      .+.....++.|++.|++|||+      +++|.|++++.++.++++|||++..+
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~  151 (256)
T cd08218          79 DYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVL  151 (256)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeec
Confidence            77654 44333322      122234456899999999876      79999999999999999999988653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>PTZ00284 protein kinase; Provisional

Probab=99.46  E-value=2.9e-14  Score=145.67  Aligned_cols=139  Identities=15%  Similarity=0.067  Sum_probs=99.7

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCC------CCccccceeEEc
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH------RNLIKILHGVAV  428 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H------~niv~l~~~~~~  428 (499)
                      +....++|...+.||+|+||+||+|+. .+++.||||+++... ...+.+..|++++..++|      ++++++++++..
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~  202 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN  202 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence            344567899999999999999999996 468899999996432 223445667777766654      457888877765


Q ss_pred             cccceeeeeecccCCCcccccccc----ccccccccccccccceeecc-------CCCcccEEEeeCC------------
Q 010856          429 ITFTVCLCLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEP------------  485 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~------------  485 (499)
                      .. ....++++++++++...+...    +.....++.|++.||+|||+       ++||.||++..++            
T Consensus       203 ~~-~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~  281 (467)
T PTZ00284        203 ET-GHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALP  281 (467)
T ss_pred             CC-ceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccC
Confidence            32 344556777777765544332    22334556899999988884       6999999997665            


Q ss_pred             ----CeEEEEEEEee
Q 010856          486 ----GVEVICFVFEI  496 (499)
Q Consensus       486 ----~~~~~~f~~~~  496 (499)
                          .++++|||++.
T Consensus       282 ~~~~~vkl~DfG~~~  296 (467)
T PTZ00284        282 PDPCRVRICDLGGCC  296 (467)
T ss_pred             CCCceEEECCCCccc
Confidence                39999999753

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.46  E-value=6.1e-14  Score=135.98  Aligned_cols=133  Identities=20%  Similarity=0.235  Sum_probs=103.4

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      |...+.+|+|+||.||+|+. .++..||+|.+....   ....+.+.+|++++++++|||++++++++...+  ..++++
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  104 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREH--TAWLVM  104 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC--eEEEEE
Confidence            66778899999999999995 468899999987543   223457889999999999999999999887633  445678


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|+.|.+.+.+..     .+.....++.|++.|+.|||+      +++|.|+++++++.++++|||++..
T Consensus       105 e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~  174 (317)
T cd06635         105 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASI  174 (317)
T ss_pred             eCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccc
Confidence            8887765443322     112233446789999999876      7899999999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.46  E-value=5.3e-14  Score=132.68  Aligned_cols=134  Identities=11%  Similarity=0.032  Sum_probs=103.6

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|+..+.||+|+||.||+|..+ +++.+|+|.+.... ....+++.+|++++++++||||+++++++...  ...+++++
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~lv~e   79 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNN--GDISICME   79 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecC--CEEEEEEE
Confidence            5777889999999999999964 68999999997654 23456789999999999999999999988764  34455677


Q ss_pred             ccCCCccc-ccccc-----ccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASA-SLVSS-----LTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~-~l~~~-----~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+..+. .+...     ......++.|++.|++|||+       +++|.|+++++++.++++|||.+..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~  150 (265)
T cd06605          80 YMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQ  150 (265)
T ss_pred             ecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchh
Confidence            77644333 22211     12233456888999998887       5889999999999999999998754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.46  E-value=4.8e-14  Score=132.12  Aligned_cols=131  Identities=17%  Similarity=0.196  Sum_probs=100.3

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .+|+..+.+|+|+||.||+|.. +++.||+|.+....  ..+.+.+|+.++++++||||+++++++....   .+.++++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~---~~~v~e~   79 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHNG---LYIVMEL   79 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCC---cEEEEEC
Confidence            5688999999999999999975 67789999986432  3467899999999999999999999876532   2456677


Q ss_pred             cCC-Ccccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.+ .+...+...      ......++.|++.|++|||+      +++|.|++++.++.++++|||++..
T Consensus        80 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~  149 (254)
T cd05083          80 MSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARV  149 (254)
T ss_pred             CCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCcccee
Confidence            654 443333221      11223345788999988776      8999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.46  E-value=4.7e-14  Score=134.38  Aligned_cols=145  Identities=17%  Similarity=0.213  Sum_probs=109.2

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      .+..++..+.+.|+..+.+|+|+||.||+|+. .+++.+|+|.+.... ....++.+|+.+++++ +||||+++++++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            35556666778899999999999999999996 568899999986543 2345688999999998 79999999998854


Q ss_pred             cc----cceeeeeecccCCCcccc-ccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEE
Q 010856          429 IT----FTVCLCLFHHSSASASAS-LVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVIC  491 (499)
Q Consensus       429 ~~----~~~~~~l~~~~~~~~~~~-l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~  491 (499)
                      .+    ....++++|++.++.... +..      .+.....++.|+++|++|||+      +++|.|+++.+++.++++|
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~d  164 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVD  164 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEee
Confidence            21    223456777776643332 221      111223345789999999977      7999999999999999999


Q ss_pred             EEEee
Q 010856          492 FVFEI  496 (499)
Q Consensus       492 f~~~~  496 (499)
                      ||++.
T Consensus       165 fg~~~  169 (282)
T cd06636         165 FGVSA  169 (282)
T ss_pred             Ccchh
Confidence            99875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.46  E-value=1.6e-14  Score=127.64  Aligned_cols=134  Identities=12%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.+....+|.|+.|+||+++. .+|...|||.+.... .+..+++.+.+.++..- +.|.||+.+|||....  ...+-+
T Consensus        93 dl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~--dV~IcM  170 (391)
T KOG0983|consen   93 DLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNT--DVFICM  170 (391)
T ss_pred             HhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCc--hHHHHH
Confidence            334457799999999999996 468999999997654 45567788888876654 6999999999997622  222345


Q ss_pred             cccCCCcccccc-ccccccccc----cccccccceee-------ccCCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLV-SSLTLSRPA----KGGGFRGCVLW-------HVGVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~-~~~~~~~~~----~~~i~~gl~yL-------H~~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+|.......+. ...+..+++    ...++.||.||       |+++||.|||++..+++|+||||++--
T Consensus       171 elMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGr  241 (391)
T KOG0983|consen  171 ELMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGR  241 (391)
T ss_pred             HHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccce
Confidence            555443222211 122233333    46678899886       889999999999999999999999754

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.46  E-value=5.8e-14  Score=131.81  Aligned_cols=127  Identities=13%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             ccccCCcceEEEEEe---CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          368 LIGKGGFGSVYKARL---GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      .||+|+||.||+|.+   .++..+|+|+++...  ....+++.+|+.+++.++||||+++++++.. +  ....+++++.
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~--~~~lv~e~~~   78 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA-E--SWMLVMELAE   78 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-C--CcEEEEecCC
Confidence            589999999999974   357899999986543  2235678999999999999999999988753 2  2344667766


Q ss_pred             CC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          443 AS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       443 ~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++ +...+..    .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~  144 (257)
T cd05116          79 LGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKA  144 (257)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccc
Confidence            54 3333322    222344456899999998876      7999999999988999999998764

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.45  E-value=5.1e-14  Score=134.55  Aligned_cols=133  Identities=12%  Similarity=0.100  Sum_probs=99.4

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|...+.||+|+||.||++.. .+++.||+|.+.... ......+.+|+.++.++. ||||+++++++....  ..+.++
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~--~~~~~~   82 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREG--DCWICM   82 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCC--cEEEEE
Confidence            455668899999999999995 468999999987543 234567889999999996 999999999886632  334456


Q ss_pred             cccCCCccccc---------cccccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSASASASL---------VSSLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~~~~~l---------~~~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++.+.+....         ...+.....++.|++.||+|||+       +++|.|++++.++.++++|||+++
T Consensus        83 e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  156 (288)
T cd06616          83 ELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISG  156 (288)
T ss_pred             ecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhH
Confidence            77665432211         11222334456888999888874       699999999999999999999875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.3e-14  Score=151.58  Aligned_cols=70  Identities=31%  Similarity=0.526  Sum_probs=59.0

Q ss_pred             HHHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeE
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGV  426 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~  426 (499)
                      .+...+|+....+|+|+||.||+++-+ ||+.||||++.... ......+.+|++++++++|||||+++..|
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAW  546 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAW  546 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhh
Confidence            456678888999999999999999954 89999999997653 33356788999999999999999998654

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.45  E-value=1.1e-13  Score=123.18  Aligned_cols=128  Identities=16%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCc---------------------c-----HHHHHHHHHHHhcCCCCCc
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR---------------------A-----FESFDVECEMMKNIRHRNL  419 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~---------------------~-----~~~~~~E~~il~~l~H~ni  419 (499)
                      ...||+|+||+||+|...+|+.||||+++.....                     .     ...+.+|.+.+.+++|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3679999999999999778999999999764210                     0     1224578999999999998


Q ss_pred             cccceeEEccccceeeeeecccCCCcc-cc-cc---ccccccccccccccccceeec-------cCCCcccEEEeeCCCe
Q 010856          420 IKILHGVAVITFTVCLCLFHHSSASAS-AS-LV---SSLTLSRPAKGGGFRGCVLWH-------VGVDFAAFVFVLEPGV  487 (499)
Q Consensus       420 v~l~~~~~~~~~~~~~~l~~~~~~~~~-~~-l~---~~~~~~~~~~~~i~~gl~yLH-------~~~~p~~~l~~~~~~~  487 (499)
                      .....+...    ..++++|+++|+.. .. +.   ........++.|++.++.|+|       +|++|.|+++. ++.+
T Consensus        82 ~~p~~~~~~----~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~  156 (190)
T cd05145          82 PVPEPILLK----KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKP  156 (190)
T ss_pred             CCceEEEec----CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCE
Confidence            654443322    12457788876521 11 11   111123344577777776655       48999999998 8899


Q ss_pred             EEEEEEEeecc
Q 010856          488 EVICFVFEILL  498 (499)
Q Consensus       488 ~~~~f~~~~~~  498 (499)
                      +++|||++..+
T Consensus       157 ~liDFG~a~~~  167 (190)
T cd05145         157 YIIDVSQAVEL  167 (190)
T ss_pred             EEEEcccceec
Confidence            99999998764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.45  E-value=7.8e-15  Score=143.80  Aligned_cols=135  Identities=16%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             ccccccccCCcceEEEEEe-CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          364 SENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ....+||+|+|-+||+|.. .+|..||--.++..+    ....++|..|+++++.++|||||++|..|.+.......++-
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            3457899999999999996 468888755443222    34568899999999999999999999998876554455566


Q ss_pred             cccCCC-ccccccccc----cccccccccccccceeeccCCCc--------ccEEEee-CCCeEEEEEEEeecc
Q 010856          439 HHSSAS-ASASLVSSL----TLSRPAKGGGFRGCVLWHVGVDF--------AAFVFVL-EPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~-~~~~l~~~~----~~~~~~~~~i~~gl~yLH~~~~p--------~~~l~~~-~~~~~~~~f~~~~~~  498 (499)
                      |.+..| +..+.....    ...+.+++||.+||.|||++.+|        .||.++. .|.|||-|.|++.++
T Consensus       123 EL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~  196 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLL  196 (632)
T ss_pred             ecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHh
Confidence            776444 433332222    23455679999999999996555        4555554 489999999998775

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.45  E-value=8.6e-14  Score=133.15  Aligned_cols=134  Identities=14%  Similarity=0.135  Sum_probs=100.6

Q ss_pred             hcccccccccCCcceEEEEEe----CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcC-CCCCccccceeEEccccc
Q 010856          362 EFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFT  432 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~  432 (499)
                      +|+..+.||+|+||.||.|+.    .+|+.||+|++....    ....+.+.+|++++.++ +|+||+++++++...  .
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~--~   78 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTD--T   78 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecC--C
Confidence            477789999999999999985    368899999997533    23346788999999999 699999998877652  2


Q ss_pred             eeeeeecccCCC-ccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSAS-ASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~-~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++++++.++ +.+.+....    .....++.|+++||+|||+      +++|.|++++.++.++++|||++..
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  154 (290)
T cd05613          79 KLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  154 (290)
T ss_pred             eEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCcccee
Confidence            444577777654 333332221    2233334689999998876      7999999999999999999998754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=6.7e-14  Score=132.63  Aligned_cols=139  Identities=17%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccc----c
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVIT----F  431 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~----~  431 (499)
                      .++++|+..+.+|+|+||.||+|..+ +++.+|+|++..... ..+++.+|+++++++ +|+||+++++++....    .
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            45678999999999999999999964 688999999876543 346789999999998 7999999999986532    2


Q ss_pred             ceeeeeecccCCCccccc-cc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          432 TVCLCLFHHSSASASASL-VS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l-~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ...+++++++.++....+ ..        .+.....++.|+++||+|||+      +++|.|++++.++.++++|||+..
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~  161 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSA  161 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccce
Confidence            234567777766533322 11        122233456899999999877      789999999999999999999875


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       162 ~  162 (275)
T cd06608         162 Q  162 (275)
T ss_pred             e
Confidence            3

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.45  E-value=7.9e-14  Score=132.05  Aligned_cols=134  Identities=19%  Similarity=0.200  Sum_probs=100.7

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC----------ccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG----------RAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~----------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      +|...+.+|+|+||.||+|.. .+|+.||+|.++....          ...+.+.+|+.+++.++||||+++++++...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            467788999999999999985 4689999998864210          11346788999999999999999999886633


Q ss_pred             cceeeeeecccCCC-ccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FTVCLCLFHHSSAS-ASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~~~~~l~~~~~~~-~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                        ..+.++|++.++ +...+....    .....++.|++.|++|||+      +++|.|+++..++.++++|||++..
T Consensus        82 --~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~  157 (272)
T cd06629          82 --YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKK  157 (272)
T ss_pred             --ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccc
Confidence              344566776544 333332222    2233445789999998887      7899999999999999999998753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.45  E-value=8.3e-14  Score=130.65  Aligned_cols=132  Identities=21%  Similarity=0.217  Sum_probs=100.0

Q ss_pred             ccccccccCCcceEEEEEeCC-----CCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          364 SENNLIGKGGFGSVYKARLGD-----RMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~~~-----~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +..+.+|+|+||.||+|+...     +..||+|.+...... ..+.+.+|++++.+++|+||+++++++...+  ....+
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~i   79 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEE--PLMIV   79 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--eeEEE
Confidence            456889999999999999642     388999999765433 5678999999999999999999999887643  34456


Q ss_pred             ecccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.++ +.+.+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||+...
T Consensus        80 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~  152 (258)
T smart00219       80 MEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRD  152 (258)
T ss_pred             EeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCcee
Confidence            6666554 3322221      222234445788899988877      7999999999999999999998753

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=8.7e-16  Score=133.93  Aligned_cols=138  Identities=17%  Similarity=0.222  Sum_probs=100.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc------c
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT------F  431 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~------~  431 (499)
                      +.|....++|+|.||+||+|+. .+|+.||+|++-...  ..-.....+|++++..+.|+|++.+++.|...+      .
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence            4466678899999999999995 468889998764322  233456789999999999999999999885421      2


Q ss_pred             ceeeeeecccCCCcccccccc-----ccccccccccccccceeec------cCCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          432 TVCLCLFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWH------VGVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH------~~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ..++.++.++..++...+...     ....+.+..++..||.|+|      ++.||+|+|.+.++-.|++|||++|++
T Consensus        97 ~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~f  174 (376)
T KOG0669|consen   97 ATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAF  174 (376)
T ss_pred             ceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccce
Confidence            235667776665543333211     1122333356677777655      599999999999999999999999875

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.45  E-value=1e-13  Score=129.98  Aligned_cols=133  Identities=17%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ++|+..+.+|+|+||.||+|... +++.||+|.+.....  .+++.+|++++++++||||+++++++...  ...+.+++
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~l~~e   78 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKN--TDLWIVME   78 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecC--CcEEEEEe
Confidence            56888899999999999999965 488999999875432  67899999999999999999999988764  34455777


Q ss_pred             ccCCCccccc-cc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASL-VS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l-~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++....+ ..     .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~  148 (256)
T cd06612          79 YCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQ  148 (256)
T ss_pred             cCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchh
Confidence            7765543322 11     222334456889999998876      7899999999999999999998653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.44  E-value=8.6e-14  Score=130.64  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=96.7

Q ss_pred             cccccCCcceEEEEEeC--C--CCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG--D--RMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~--~--~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||.||+|.+.  +  +..+|+|.+..... ...+++.+|++++++++||||+++++++...   ....+++++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---~~~~v~e~~   77 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGE---PLMLVMELA   77 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCC---ceEEEEEeC
Confidence            46899999999999852  2  36899999876543 2456789999999999999999999877542   234566666


Q ss_pred             CC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          442 SA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       442 ~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+ .+.+.+..    .+.....++.|++.|++|||+      +++|.|+++++++.++++|||.++.
T Consensus        78 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~  144 (257)
T cd05060          78 PLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRA  144 (257)
T ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccce
Confidence            54 44433332    222334556889999988876      7999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.44  E-value=8.8e-14  Score=131.24  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=104.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|+..+.+|.|+||.||+|.. .++..+|+|++.... ....+.+.+|+++++.++|+||+++++.+...+  ..+++++
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~iv~e   79 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGD--ELWLVMP   79 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCC--EEEEEEe
Confidence            688899999999999999995 468899999997543 335677999999999999999999998876633  4456777


Q ss_pred             ccCCCccc-cccc-------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASA-SLVS-------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~-~l~~-------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.|+... .+..       .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~  151 (267)
T cd06610          80 YLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSAS  151 (267)
T ss_pred             ccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHH
Confidence            77655333 2221       122234446889999999877      7999999999999999999998754

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=1.7e-14  Score=149.66  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=106.4

Q ss_pred             HHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcc
Q 010856          354 LELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVI  429 (499)
Q Consensus       354 ~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~  429 (499)
                      .++.-..++|.+.++||+|+||.|..++. .+++.||+|++.+..   ......|..|-.||..-+.+.|+.++.+|.+.
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            44555668899999999999999999996 479999999998743   34456688899999999999999999888775


Q ss_pred             ccceeeeeeccc-CCCccccccccccccccc----------cccccccceeeccCCCcccEEEeeCCCeEEEEEEE
Q 010856          430 TFTVCLCLFHHS-SASASASLVSSLTLSRPA----------KGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       430 ~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~----------~~~i~~gl~yLH~~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      +|.  +++|+|| +|++...+.......+.+          |+.-++-|.|+|+|+||.|+|++..|-++++|||=
T Consensus       148 ~~L--YlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGs  221 (1317)
T KOG0612|consen  148 RYL--YLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGS  221 (1317)
T ss_pred             cce--EEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchh
Confidence            433  4456666 555433333322233333          24556778899999999999999999999999994

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=1.3e-13  Score=131.01  Aligned_cols=134  Identities=16%  Similarity=0.222  Sum_probs=103.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCC---CCCccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIR---HRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~---H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .|+..+.+|+|+||.||+|.. .+++.||+|.++... ....+++.+|++++++++   |||++++++++...  ...++
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~--~~~~l   79 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKG--PRLWI   79 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeC--CEEEE
Confidence            477788999999999999995 578999999987543 344567889999999986   99999999988763  34455


Q ss_pred             eecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.|+.+..+...    +.....++.|+++|+.|||+      +++|.|+++++++.++++|||++..
T Consensus        80 v~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06917          80 IMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAAL  150 (277)
T ss_pred             EEecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceee
Confidence            7777765543332221    12233445789999999877      7999999999999999999998764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.43  E-value=1.2e-13  Score=129.85  Aligned_cols=129  Identities=20%  Similarity=0.187  Sum_probs=100.2

Q ss_pred             cccccCCcceEEEEEeC-C---CCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG-D---RMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~-~---~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||.||+|... .   +..||+|.+...... ..+.+.+|+++++.++|+||+++++++..  ....+++++++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--~~~~~lv~e~~   78 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE--EEPLYLVLEYM   78 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC--CCceEEEEEec
Confidence            46899999999999964 3   789999999765432 36789999999999999999999998876  33445567777


Q ss_pred             -CCCcccccccc-------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          442 -SASASASLVSS-------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       442 -~~~~~~~l~~~-------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ++.+...+...             +.....++.|++.|++|||+      +++|.||+++.++.++++|||.++.
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~  154 (262)
T cd00192          79 EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRD  154 (262)
T ss_pred             cCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccc
Confidence             45444333321             12234446889999998877      8999999999999999999998764

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.43  E-value=1e-13  Score=132.78  Aligned_cols=129  Identities=18%  Similarity=0.185  Sum_probs=101.3

Q ss_pred             ccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC
Q 010856          366 NNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      ...||+|+||.||++.. .+++.||+|.+........+.+.+|+.+++.++|+||+++++++...+  ..+.++|++.++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~~~  102 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVVMEFLEGG  102 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCC--EEEEEEecCCCC
Confidence            46799999999999986 578999999986554445567999999999999999999999887643  455678887665


Q ss_pred             ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          445 ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       445 ~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ....+..    .+.....++.|++.|++|||+      +++|.|++++.++.++++|||++.
T Consensus       103 ~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~  164 (292)
T cd06657         103 ALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA  164 (292)
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccce
Confidence            4443321    222233446889999999866      899999999988899999999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.43  E-value=1.3e-14  Score=124.97  Aligned_cols=135  Identities=16%  Similarity=0.187  Sum_probs=106.4

Q ss_pred             HhhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..++|++.+.+|+|.|++|+.|. ..+.+.+.||++++.+   .+.+.+|++|+..++ |||||++++...+.+....-.
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk---kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK---KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH---HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            45679999999999999999999 4678899999998643   467899999999997 999999999998877766666


Q ss_pred             eecccCCCcccccccccc--ccccccccccccceeecc------CCCcccEEEeeC-CCeEEEEEEEee
Q 010856          437 LFHHSSASASASLVSSLT--LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-PGVEVICFVFEI  496 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~~~--~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-~~~~~~~f~~~~  496 (499)
                      ++|+.....+..+-....  ..+-...++..||.|+|+      ++||.|++.+.. -...+||.|++-
T Consensus       113 iFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAE  181 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAE  181 (338)
T ss_pred             HhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHh
Confidence            888887765554433221  223334677777777765      899999999864 588999999863

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.43  E-value=1.4e-13  Score=129.03  Aligned_cols=135  Identities=13%  Similarity=0.095  Sum_probs=101.0

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|++|.||++.. .+++.||+|.+....  ....+.+.+|++++++++|||++++++.+...+. ...+++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-~~~lv~   79 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDG-LLYIVM   79 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCC-EEEEEe
Confidence            478889999999999999995 467899999997543  2345678999999999999999999887654332 234566


Q ss_pred             cccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++ +.+.+..      .+.....++.|++.|++|||+      +++|.|+++++++.++++|||....
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~  151 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARV  151 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEE
Confidence            776544 3333321      112234456788888887766      8999999999999999999998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.43  E-value=1.3e-13  Score=134.67  Aligned_cols=136  Identities=14%  Similarity=0.085  Sum_probs=102.7

Q ss_pred             hcccccccccCCcceEEEEEeC-C--CCEEEEEEeeccC--CccHHHHHHHHHHHhcC-CCCCccccceeEEcc--ccce
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-D--RMEVAVKVFNLQC--GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI--TFTV  433 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~--~~~vavK~~~~~~--~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~--~~~~  433 (499)
                      +|+..+.||+|+||.||+|+.. +  +..||+|++....  ....+.+.+|+++++++ +||||+++++++...  .+..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            3777889999999999999953 4  7899999986432  22356788999999999 599999999875432  2233


Q ss_pred             eeeeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+.+++++++++...+...    +.....++.|++.||+|||+      +++|.||++++++.++++|||++..
T Consensus        81 ~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~  154 (332)
T cd07857          81 LYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARG  154 (332)
T ss_pred             EEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCcee
Confidence            4556777777655444322    22234456899999999887      7999999999999999999998764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.43  E-value=1.6e-13  Score=130.92  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=102.1

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      |...+.||+|++|.||+|.. .+++.+|+|+++.......+.+.+|+.+++.++||||+++++++...+  ..+++++++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~--~~~~v~e~~   98 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGD--ELWVVMEFL   98 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCC--eEEEEEecc
Confidence            45567899999999999995 578899999987655445567899999999999999999999887643  345567777


Q ss_pred             CCCccccc-cc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          442 SASASASL-VS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       442 ~~~~~~~l-~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .|+..... ..   .......++.|++.|++|||+      +++|.|++++.++.++++|||++.
T Consensus        99 ~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~  163 (285)
T cd06648          99 EGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCA  163 (285)
T ss_pred             CCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccch
Confidence            55443332 22   112233456889999999877      789999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.43  E-value=2e-13  Score=136.48  Aligned_cols=202  Identities=34%  Similarity=0.481  Sum_probs=159.6

Q ss_pred             EEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCC-CCCeEecccccccccCCccccCcccccEEeeecC
Q 010856           35 DFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQ-KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGN  113 (499)
Q Consensus        35 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (499)
                      .+++..|.+... ......++.++.|++.+|.++.+ +.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            578888887422 33456668899999999999844 44455664 8999999999998 44466888999999999999


Q ss_pred             CCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCccc
Q 010856          114 KLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTE  193 (499)
Q Consensus       114 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (499)
                      +++.. +......++|+.|++++|+++.+|........|++|++++|.+. ..+..+..+.++..+.+.+|++.. .+..
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~  250 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES  250 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence            99944 44444778999999999999999987666777999999999543 255677888888888899998874 3677


Q ss_pred             ccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccC
Q 010856          194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEK  244 (499)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  244 (499)
                      +..++++++|++++|.++.+..  +..+.+++.|++++|.+....+.....
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             hccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhcc
Confidence            8888999999999999996544  888999999999999998766655443

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.43  E-value=7e-14  Score=136.43  Aligned_cols=136  Identities=15%  Similarity=0.113  Sum_probs=107.1

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc---cceee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---FTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---~~~~~  435 (499)
                      +|...+.||+|+||.||+|+.. +++.||+|++....  ....+.+.+|+++++.++||||+++++++...+   ....+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4778899999999999999964 58999999997543  334567999999999999999999999887643   22445


Q ss_pred             eeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.+++...+...    +.....++.|+++||+|||+      +++|.|++++.++.++++|||+...
T Consensus        81 lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~  152 (330)
T cd07834          81 IVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARG  152 (330)
T ss_pred             EEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEe
Confidence            67888877654444332    22234456889999988876      7999999999999999999998764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.43  E-value=1.4e-13  Score=134.54  Aligned_cols=134  Identities=13%  Similarity=0.064  Sum_probs=102.5

Q ss_pred             hcc-cccccccCCcceEEEEEe-CCCCEEEEEEeeccCCcc--------------HHHHHHHHHHHhcCCCCCcccccee
Q 010856          362 EFS-ENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRA--------------FESFDVECEMMKNIRHRNLIKILHG  425 (499)
Q Consensus       362 ~~~-~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~--------------~~~~~~E~~il~~l~H~niv~l~~~  425 (499)
                      .|. ..+.||+|+||+||+|.. .+++.||+|.+.......              ...+.+|++++++++||||++++++
T Consensus         9 ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   88 (335)
T PTZ00024          9 RYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDV   88 (335)
T ss_pred             chhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEE
Confidence            343 457799999999999995 468999999986543111              1257899999999999999999999


Q ss_pred             EEccccceeeeeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          426 VAVITFTVCLCLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      +...+  ....++|++.|++...+...    ......++.|++.||+|||+      +++|.||++.+++.++++|||.+
T Consensus        89 ~~~~~--~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~  166 (335)
T PTZ00024         89 YVEGD--FINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLA  166 (335)
T ss_pred             EecCC--cEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccce
Confidence            87644  44567888887765544322    22233446889999998877      78999999999999999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       167 ~~  168 (335)
T PTZ00024        167 RR  168 (335)
T ss_pred             ee
Confidence            64

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.43  E-value=1.4e-13  Score=129.59  Aligned_cols=134  Identities=13%  Similarity=0.116  Sum_probs=105.1

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +|...+.||+|++|.||+|+.. +++.||+|++..... ...+.+.+|++++.+++|+||+++++++...  ...+.+++
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~lv~e   79 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKE--GEISIVLE   79 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccC--CeEEEEEE
Confidence            5778899999999999999965 599999999976543 3467899999999999999999999988764  34455677


Q ss_pred             ccCCCccc-cccc----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASA-SLVS----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.+. .+..    .......++.|+++|++|||+       +++|.|+++++++.++++|||+...
T Consensus        80 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~  149 (264)
T cd06623          80 YMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKV  149 (264)
T ss_pred             ecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCcccee
Confidence            77644333 3322    122233446889999999987       6899999999999999999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.43  E-value=4.4e-14  Score=138.56  Aligned_cols=140  Identities=16%  Similarity=0.133  Sum_probs=107.5

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc---
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF---  431 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~---  431 (499)
                      ...++|...+.||+|+||.||+|+. .+++.||+|++....  ....+.+.+|+.++++++||||+++++++...+.   
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            3456799999999999999999996 468899999986532  2334667889999999999999999987754332   


Q ss_pred             -ceeeeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 -TVCLCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 -~~~~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ...+++++++++++.+.+..   .+.....++.|+++|++|||+      +++|.|+++++++.++++|||++..
T Consensus        92 ~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~  167 (343)
T cd07851          92 FQDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARH  167 (343)
T ss_pred             cccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEcccccccc
Confidence             33566788887665443322   223344456889999998876      7999999999999999999998764

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.42  E-value=1.1e-13  Score=132.96  Aligned_cols=136  Identities=13%  Similarity=0.061  Sum_probs=102.6

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .++|+..+.+|+|+||.||+|... +++.||+|.++... ......+.+|++++.+. +||||+++++++....  ..++
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~~   91 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDS--DVFI   91 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCC--eEEE
Confidence            356788899999999999999975 48999999997643 22345677788777666 5999999999987633  4456


Q ss_pred             eecccCCCcccccc-----ccccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLV-----SSLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~-----~~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.+.+.....     ..+.....++.|++.|++|||+       +++|.|+++++++.++++|||++..
T Consensus        92 v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~  164 (296)
T cd06618          92 CMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGR  164 (296)
T ss_pred             EeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchh
Confidence            77887664322221     1222334567899999998885       5899999999999999999998753

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.42  E-value=1.7e-13  Score=132.65  Aligned_cols=132  Identities=20%  Similarity=0.203  Sum_probs=101.4

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      |...+.+|+|+||+||+|+. .+++.||+|.+.....   ...+.+.+|+++++.++|||++++++++...+  ..++++
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~  100 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEH--TAWLVM  100 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCC--EEEEEE
Confidence            55567799999999999995 4688999999975432   23456889999999999999999999987743  445677


Q ss_pred             cccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++.|++...+...     +.....++.|++.|++|||+      +++|.||++++++.++++|||++.
T Consensus       101 e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~  169 (313)
T cd06633         101 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSAS  169 (313)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCc
Confidence            88777654443221     11223345788899888877      789999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.42  E-value=2e-13  Score=127.94  Aligned_cols=137  Identities=20%  Similarity=0.241  Sum_probs=106.1

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|...+.||+|++|.||+|... +++.|++|++.....  ...+.+.+|++++++++||||+++++.+........++++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3677889999999999999964 789999999976542  3467899999999999999999999988764223455677


Q ss_pred             cccCCCcccc-ccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSASASAS-LVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~~-l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++.++.... +..    .+.....++.|+++|++|||+      +++|.|++++.++.++++|||++...
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~  151 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRL  151 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEec
Confidence            7775543332 221    222234456889999999887      78999999999999999999988753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.42  E-value=2.4e-13  Score=126.88  Aligned_cols=134  Identities=25%  Similarity=0.307  Sum_probs=105.1

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      +|+..+.+|+|++|.||++... +++.+++|++........+.+.+|++++++++||||+++++++...  .....++++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~l~~e~   78 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKK--DELWIVMEF   78 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecC--CeEEEEEec
Confidence            4777899999999999999964 7889999999766544567899999999999999999999988763  234556777


Q ss_pred             cCCCcccccc-c-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSASASASLV-S-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~~~~~~l~-~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.|..+..+. .     .+.....++.|+++|++|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~  147 (253)
T cd05122          79 CSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQ  147 (253)
T ss_pred             CCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccc
Confidence            7654433321 1     122233445788899988877      8999999999999999999998764

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.42  E-value=3.3e-14  Score=133.60  Aligned_cols=129  Identities=15%  Similarity=0.103  Sum_probs=95.2

Q ss_pred             cccccCCcceEEEEEeC-CC-------CEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          367 NLIGKGGFGSVYKARLG-DR-------MEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.||+|+||.||+|... .+       ..||+|.+........+.+.+|+.+++.++||||+++++++...+  ..+.++
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~--~~~lv~   78 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD--ESIMVQ   78 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCC--CcEEEE
Confidence            36899999999999853 22       348888886554445577899999999999999999999987643  334567


Q ss_pred             cccCCCccc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCCC--------eEEEEEEEeec
Q 010856          439 HHSSASASA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG--------VEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~--------~~~~~f~~~~~  497 (499)
                      ||+.++.+. .+..     .+.....++.|++.|++|||+      +++|.|+++.+++.        ++++|||++..
T Consensus        79 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~  157 (258)
T cd05078          79 EYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT  157 (258)
T ss_pred             ecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccc
Confidence            777655433 3322     222233456899999999877      79999999987765        58999998753

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.42  E-value=1.5e-13  Score=130.65  Aligned_cols=127  Identities=11%  Similarity=0.079  Sum_probs=95.7

Q ss_pred             cccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC
Q 010856          369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       369 lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      ||+|+||+||+|.. .+|+.||+|.+....   ....+.+.+|++++++++||||+++++++...+  ...++++|+.++
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv~e~~~~~   78 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKD--DLCLVMTLMNGG   78 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCC--eEEEEEecCCCC
Confidence            68999999999985 468999999997543   223456788999999999999999998886633  345577777654


Q ss_pred             ccc-cccccc------cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          445 ASA-SLVSSL------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       445 ~~~-~l~~~~------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+. .+....      .....++.|++.|+.|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~  144 (277)
T cd05577          79 DLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVE  144 (277)
T ss_pred             cHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhh
Confidence            333 322211      1223335789999998877      7999999999999999999998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.42  E-value=2.2e-13  Score=136.14  Aligned_cols=199  Identities=36%  Similarity=0.504  Sum_probs=151.1

Q ss_pred             EEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcc-cccEEeeecCCCCCcCCccccCCccCCeeecccc
Q 010856           59 IVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLA-ELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSN  137 (499)
Q Consensus        59 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  137 (499)
                      .+++..|.+.. .......++.++.|++.+|.++ .++.....++ +|+.|++++|++. ..+..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            57777777642 2333455678889999999888 4445555564 8899999999988 44456778889999999999


Q ss_pred             CCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcc
Q 010856          138 KLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS  217 (499)
Q Consensus       138 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  217 (499)
                      +++++|......+.|+.|++++|+++. +|........|++|.+++|.+. ..+..+..+.++..+.+.+|++.. .+..
T Consensus       174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~  250 (394)
T COG4886         174 DLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES  250 (394)
T ss_pred             hhhhhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence            999888776678889999999998885 4444445566888889888543 345667788888888888888873 3677


Q ss_pred             ccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC
Q 010856          218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG  265 (499)
Q Consensus       218 l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  265 (499)
                      +..+++++.|++++|.++....  +..+.+++.|++++|.+....|..
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            7888889999999999885544  778888999999999888666554

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.42  E-value=1.7e-13  Score=130.57  Aligned_cols=134  Identities=19%  Similarity=0.206  Sum_probs=105.0

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      |...+.||+|++|.||+|.. .+++.+|+|.++....  .....+.+|++++++++|+||+++++++...  .....+++
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~~v~e   78 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHK--GDLYLVFE   78 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccC--CCEEEEEe
Confidence            45667899999999999996 4789999999876542  2456788999999999999999999988763  34456778


Q ss_pred             ccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++.+++...+...     +.....++.|++.|++|||+      +++|.|+++.+++.++++|||.+..+
T Consensus        79 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~  148 (283)
T cd05118          79 FMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSF  148 (283)
T ss_pred             ccCCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEec
Confidence            8877665544332     22234456889999998877      89999999999999999999988643

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.42  E-value=2.2e-13  Score=128.25  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=98.0

Q ss_pred             cccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCC-
Q 010856          369 IGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSA-  443 (499)
Q Consensus       369 lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~-  443 (499)
                      ||+|+||.||+|+.. +++.||+|++.+..   ....+.+.+|+++++.++||||+++++++...+  ..+++++++.+ 
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e~~~~~   78 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKK--YIYMLMEYCLGG   78 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCC--ccEEEEecCCCC
Confidence            699999999999964 58999999997643   233567999999999999999999999876633  34556777654 


Q ss_pred             Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          444 SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       444 ~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .+.+.+....    .....++.|++.||+|||+      +++|.|+++++++.++++|||+...+
T Consensus        79 ~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~  143 (262)
T cd05572          79 ELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKL  143 (262)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCccccc
Confidence            4433333222    2233345789999998877      79999999999999999999987643

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.42  E-value=7.5e-14  Score=132.69  Aligned_cols=135  Identities=14%  Similarity=0.178  Sum_probs=104.5

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~  436 (499)
                      +|...+.||+|+||.||+|+. .+++.||+|++....   ....+.+.+|.+++++++ ||||+++++++...+  ....
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--~~~l   79 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEE--NLYF   79 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCc--eEEE
Confidence            688889999999999999996 479999999997532   223467889999999998 999999998876533  3445


Q ss_pred             eeccc-CCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHS-SASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~-~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++++ ++++.+.+...    +.....++.|++.||+|||+      +++|.|+++..++.++++|||....+
T Consensus        80 v~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~  152 (280)
T cd05581          80 VLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVL  152 (280)
T ss_pred             EEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCcccccc
Confidence            67777 55544443322    22344456889999998887      79999999999999999999987654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.42  E-value=1.3e-13  Score=130.43  Aligned_cols=128  Identities=19%  Similarity=0.194  Sum_probs=93.9

Q ss_pred             cccccCCcceEEEEEeC-CCC--EEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG-DRM--EVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~-~~~--~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.+|+|+||.||+|+.. ++.  .+|+|.+.... ....+.+.+|+++++++ +||||+++++++....  ..+.+++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~--~~~lv~e~~   78 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLYLAIEYA   78 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCC--CceEEEEeC
Confidence            36899999999999964 444  46888886433 33456789999999999 8999999999887643  234566666


Q ss_pred             C-CCcccccccc--------------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          442 S-ASASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       442 ~-~~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      . |++.+.+...                    +.....++.|++.|++|||+      +++|.|+++++++.++++|||+
T Consensus        79 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl  158 (270)
T cd05047          79 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGL  158 (270)
T ss_pred             CCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCC
Confidence            4 4443333211                    11223445788999988866      8999999999999999999998


Q ss_pred             ee
Q 010856          495 EI  496 (499)
Q Consensus       495 ~~  496 (499)
                      +.
T Consensus       159 ~~  160 (270)
T cd05047         159 SR  160 (270)
T ss_pred             cc
Confidence            64

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.41  E-value=3.1e-13  Score=126.44  Aligned_cols=134  Identities=20%  Similarity=0.258  Sum_probs=104.0

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|++|.||+|+.. +++.||+|.+.....  ...+.+.+|++++++++|||++++++++...+  ..++++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~v~   78 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSD--SLYIIL   78 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCC--EEEEEE
Confidence            4777899999999999999864 688999999976543  35678999999999999999999998887632  445577


Q ss_pred             cccCCCcccc-ccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASAS-LVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~-l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++.+.. +..    .+.....++.|++.|++|||+      +++|.|++++.++.++++|||++..
T Consensus        79 e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  148 (254)
T cd06627          79 EYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATK  148 (254)
T ss_pred             ecCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEecccccee
Confidence            7776543332 221    222234456788898888777      7999999999999999999998764

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.41  E-value=2.8e-13  Score=128.08  Aligned_cols=134  Identities=15%  Similarity=0.162  Sum_probs=99.3

Q ss_pred             hcccccccccCCcceEEEEEeC--CCCEEEEEEeeccC----------CccHHHHHHHHHHHhc-CCCCCccccceeEEc
Q 010856          362 EFSENNLIGKGGFGSVYKARLG--DRMEVAVKVFNLQC----------GRAFESFDVECEMMKN-IRHRNLIKILHGVAV  428 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~--~~~~vavK~~~~~~----------~~~~~~~~~E~~il~~-l~H~niv~l~~~~~~  428 (499)
                      +|+..+.||+|+||.||+|+..  .++.+|+|.+....          .....++.+|+.++.+ ++||||+++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            3777889999999999999964  37889999885321          1223557789988865 799999999998876


Q ss_pred             cccceeeeeecccCCCcccccc---------ccccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEE
Q 010856          429 ITFTVCLCLFHHSSASASASLV---------SSLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICF  492 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~~~~~l~---------~~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f  492 (499)
                      .+  ..++++||+.|+....+.         ........++.|++.|++|||+       +++|.|+++++++.++++||
T Consensus        81 ~~--~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~df  158 (269)
T cd08528          81 ND--RLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDF  158 (269)
T ss_pred             CC--eEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecc
Confidence            33  445677777654333221         1112234446789999999984       58899999999999999999


Q ss_pred             EEeec
Q 010856          493 VFEIL  497 (499)
Q Consensus       493 ~~~~~  497 (499)
                      |++..
T Consensus       159 g~~~~  163 (269)
T cd08528         159 GLAKQ  163 (269)
T ss_pred             cceee
Confidence            98864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.41  E-value=2.2e-13  Score=127.72  Aligned_cols=134  Identities=13%  Similarity=0.147  Sum_probs=101.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|...+.+|+|+||.||++.. .+++.+|+|.+....  ....+.+.+|++++++++||||+++++.+...  ...+.++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~lv~   78 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLED--KALMIVM   78 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecC--CEEEEEE
Confidence            477889999999999999985 468899999997543  23456789999999999999999999887653  2445677


Q ss_pred             cccCCCc-cccccc------cccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeec
Q 010856          439 HHSSASA-SASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~-~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~  497 (499)
                      +++.|+. .+.+..      .+.....++.|++.|++|||+      +++|.|+++++++ .++++|||++..
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~  151 (256)
T cd08220          79 EYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKI  151 (256)
T ss_pred             ecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCcee
Confidence            7776543 333221      122234445789999998876      7999999997655 468999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.41  E-value=1.7e-13  Score=129.05  Aligned_cols=127  Identities=13%  Similarity=0.087  Sum_probs=97.9

Q ss_pred             cccCCcceEEEEEeC-CCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC
Q 010856          369 IGKGGFGSVYKARLG-DRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       369 lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      +|+|+||.||+|+.. +|+.||+|.+.....   ...+.+.+|++++++++||||+++++.+..  ....+++++++.++
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~--~~~~~lv~e~~~~~   78 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG--KKNLYLVMEYLPGG   78 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec--CcEEEEEEecCCCC
Confidence            689999999999975 599999999975542   345678999999999999999999988765  33445677777654


Q ss_pred             ccc-cccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          445 ASA-SLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       445 ~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+. .+..    .+.....++.|+++||+|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~  142 (265)
T cd05579          79 DLASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKV  142 (265)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchh
Confidence            332 2222    222334456889999988876      7999999999999999999998754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.41  E-value=2.1e-13  Score=131.64  Aligned_cols=134  Identities=22%  Similarity=0.219  Sum_probs=103.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .|+..+.+|+|+||.||+|+. .+++.+|+|.+....   ....+++.+|+++++.++|+|++++++++...+  ..+.+
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   93 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWLV   93 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--eeEEE
Confidence            366778899999999999996 468899999986432   223456889999999999999999999887633  44567


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.|.+...+..     .+.....++.|++.|++|||+      +++|.|+++++++.++++|||++..
T Consensus        94 ~e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  164 (308)
T cd06634          94 MEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASI  164 (308)
T ss_pred             EEccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCccccee
Confidence            77777765443321     112233445788999999877      7999999999999999999998764

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.40  E-value=1.7e-13  Score=128.51  Aligned_cols=135  Identities=14%  Similarity=0.119  Sum_probs=101.5

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|...+.+|+|+||.||+|.. .+|..||+|.+....  ....+.+.+|+++++.++|+||+++++.+...+  ..+.++
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~--~~~lv~   78 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENG--RLFIVM   78 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCC--eEEEEE
Confidence            477889999999999999996 468899999986543  234567889999999999999999999886633  445567


Q ss_pred             cccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeecc
Q 010856          439 HHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~~  498 (499)
                      +++.+. +.+.+..      .+.....++.|+++|++|||+      +++|.|+++++++ .++++|||.+..+
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~  152 (257)
T cd08225          79 EYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQL  152 (257)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhc
Confidence            777554 3332221      222344556789999998877      7999999998775 4699999987643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.40  E-value=2.7e-13  Score=129.41  Aligned_cols=135  Identities=19%  Similarity=0.195  Sum_probs=104.9

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ....|+..+.+|+|+||.||+|... ++..||+|++..... ..+.+.+|+++++.++|+||+++++++...+  ..+.+
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~lv   93 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGD--ELWVV   93 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECC--EEEEE
Confidence            4456788889999999999999975 688999999976543 4577899999999999999999999887643  34556


Q ss_pred             ecccCCCccc-ccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSASASA-SLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~~~~~-~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++++.|+.+. .+...     +.....++.|++.||+|||+      +++|.|++++.++.++++|||+..
T Consensus        94 ~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~  164 (286)
T cd06614          94 MEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAA  164 (286)
T ss_pred             EeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhh
Confidence            7777644333 33222     11233346889999998886      789999999999999999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.40  E-value=2.3e-13  Score=129.83  Aligned_cols=135  Identities=20%  Similarity=0.214  Sum_probs=101.7

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcC---CCCCccccceeEEcccc---ce
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNI---RHRNLIKILHGVAVITF---TV  433 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l---~H~niv~l~~~~~~~~~---~~  433 (499)
                      |+..+.+|+|+||.||+|+.+ +++.||+|++....  ......+.+|+.+++++   +||||+++++++...+.   ..
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            566789999999999999975 58999999997543  22245677888877655   69999999999876543   23


Q ss_pred             eeeeecccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ...+++++.+++...+..      .+.....++.|+++||+|||+      +++|.|+++++++.++++|||+...
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             eEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCccee
Confidence            556778887665443322      222334456899999998876      7999999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.40  E-value=2.5e-13  Score=127.28  Aligned_cols=134  Identities=18%  Similarity=0.163  Sum_probs=103.1

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|+..+.+|+|+||.||+++. .+++.+|+|.+....  .....++.+|++++++++|+||+++++++...  ...+.++
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~~v~   78 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDG--NKLCIVM   78 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccC--CEEEEEe
Confidence            477788999999999999985 478899999997543  23356788999999999999999999888763  3455677


Q ss_pred             cccCCCcccc-ccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASAS-LVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~-l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.+..... +..        .+.....++.|+++|++|||+      +++|.|+++++++.++++|||....
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~  152 (256)
T cd08530          79 EYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKV  152 (256)
T ss_pred             hhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhh
Confidence            8776553332 211        112233445789999999876      7999999999999999999998764

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.39  E-value=1.2e-13  Score=130.45  Aligned_cols=128  Identities=21%  Similarity=0.258  Sum_probs=95.2

Q ss_pred             cccccCCcceEEEEEeCC-------CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          367 NLIGKGGFGSVYKARLGD-------RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~-------~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.+|+|+||.||+|+..+       ++.+|+|.+.... ......+.+|+.+++.++||||+++++++...+  ....++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~   78 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNE--PQYIIM   78 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCC--CeEEEE
Confidence            368999999999998532       2579999886543 234567899999999999999999999887644  334566


Q ss_pred             cccCC-Ccccccccc-----------ccccccccccccccceeecc------CCCcccEEEeeCC-----CeEEEEEEEe
Q 010856          439 HHSSA-SASASLVSS-----------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-----GVEVICFVFE  495 (499)
Q Consensus       439 ~~~~~-~~~~~l~~~-----------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-----~~~~~~f~~~  495 (499)
                      +++.+ .+.+.+...           +.....++.|++.|++|||+      +++|.|++++.++     .++++|||++
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~  158 (269)
T cd05044          79 ELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA  158 (269)
T ss_pred             eccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence            66654 443333211           11223346789999998887      7999999998776     8999999987


Q ss_pred             e
Q 010856          496 I  496 (499)
Q Consensus       496 ~  496 (499)
                      .
T Consensus       159 ~  159 (269)
T cd05044         159 R  159 (269)
T ss_pred             c
Confidence            5

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.39  E-value=2.5e-13  Score=129.46  Aligned_cols=133  Identities=17%  Similarity=0.118  Sum_probs=102.4

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeeeec
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      |...+.||+|+||.||+|+.. +++.||+|++..... .......+|+..+++++ ||||+++++++...  ...+.+++
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~--~~~~lv~e   78 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFREN--DELYFVFE   78 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcC--CcEEEEEe
Confidence            566788999999999999974 588999999865432 22334567999999999 99999999988763  34456777


Q ss_pred             ccCCCccccccccc------cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVSSL------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~~~------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.+.+.+....      .....++.|++.||+|||+      +++|.|+++++++.++++|||++..
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~  148 (283)
T cd07830          79 YMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLARE  148 (283)
T ss_pred             cCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeeccccee
Confidence            77776655443322      2233445789999998887      7899999999999999999998764

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=1.3e-13  Score=124.73  Aligned_cols=135  Identities=15%  Similarity=0.181  Sum_probs=99.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+++|+|.||+|.+++. .+++.||+|++++.-.   .....-..|-++++..+||.+..+...|...+ ...+
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~d-rlCF  245 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQD-RLCF  245 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCc-eEEE
Confidence            46788889999999999999995 5799999999987642   22344567999999999999998875555433 3333


Q ss_pred             eeecccCCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          436 CLFHHSSASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ++++..+|+++..+......    .+-.-..|+.||.|||+      +.|-+|.++++++-.||.|||+-
T Consensus       246 VMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLC  315 (516)
T KOG0690|consen  246 VMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLC  315 (516)
T ss_pred             EEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccc
Confidence            33344455554444332222    22223678999999999      68889999999999999999973

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=1.6e-14  Score=139.73  Aligned_cols=169  Identities=31%  Similarity=0.452  Sum_probs=80.9

Q ss_pred             EEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCC
Q 010856           35 DFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNK  114 (499)
Q Consensus        35 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  114 (499)
                      ..+|+.|++. .+|..+..+..|+.+.|.+|.+. .+|..+.++..|++|||+.|+++ ..|..++.++ |+.|-+++|+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            3444555544 34444444444555555555544 34444455555555555555554 3344444332 4455555555


Q ss_pred             CCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccc
Q 010856          115 LSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI  194 (499)
Q Consensus       115 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (499)
                      ++ .+|..++....|..|+.+.|++..+|..++.+.+|+.|++..|++.. .|..+. .-.|..||+|.|++. .+|-.|
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~iPv~f  230 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YLPVDF  230 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ecchhh
Confidence            54 33444444455555555555555555555555555555555555443 222333 223445555555554 344445


Q ss_pred             cCCcCCceeeCcCCcCC
Q 010856          195 GGLKNLEYLFLGYNRLQ  211 (499)
Q Consensus       195 ~~l~~L~~L~L~~n~l~  211 (499)
                      ..+..|++|-|.+|.++
T Consensus       231 r~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhheeeeeccCCCC
Confidence            55555555555555554

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.38  E-value=5.4e-13  Score=125.01  Aligned_cols=134  Identities=17%  Similarity=0.126  Sum_probs=103.9

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +|...+.+|+|+||.||++.. .++..||+|++.....  ...+.+.+|+++++.++|||++++++.+...  .....++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~--~~~~lv~   78 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEK--GKLCIVM   78 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecC--CEEEEEE
Confidence            477889999999999999996 4688999999976542  4566789999999999999999999988764  3444567


Q ss_pred             cccCCC-cccccccc--------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSAS-ASASLVSS--------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~-~~~~l~~~--------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++ +...+...        ......++.|++.|++|||+      +++|.|+++++++.++++|||+...
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~  152 (258)
T cd08215          79 EYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKV  152 (258)
T ss_pred             EecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceee
Confidence            777654 33333221        12233446788999998887      7999999999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.38  E-value=2.5e-13  Score=129.25  Aligned_cols=133  Identities=19%  Similarity=0.217  Sum_probs=104.6

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      |+..+.||+|+||.||+|+.. +++.||+|.+....  ....+.+.+|++++++++|+||+++++++...+  ..+++++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--~~~~v~e   78 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTER--KLYLVFE   78 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCC--ceEEEec
Confidence            456678999999999999964 68999999997653  334567889999999999999999999887643  4456778


Q ss_pred             ccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+++...+...     ......++.|+++|++|||+      +++|.|+++.+++.++++|||+...
T Consensus        79 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~  147 (282)
T cd07829          79 YCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARA  147 (282)
T ss_pred             CcCcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccc
Confidence            8877654444322     22334456889999999976      7999999999999999999998753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.38  E-value=2.7e-13  Score=136.77  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=94.3

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-----------------CCCCEEEEEEeeccCCccHH--------------HHHH
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-----------------GDRMEVAVKVFNLQCGRAFE--------------SFDV  406 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-----------------~~~~~vavK~~~~~~~~~~~--------------~~~~  406 (499)
                      ...++|...++||+|+||.||+|..                 ..++.||||++........+              ....
T Consensus       142 ~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        142 WSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             ccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHH
Confidence            3567899999999999999999963                 23568999998654322222              3445


Q ss_pred             HHHHHhcCCCCCc-----cccceeEEcc------ccceeeeeecccCCCccc-cccc-----------------------
Q 010856          407 ECEMMKNIRHRNL-----IKILHGVAVI------TFTVCLCLFHHSSASASA-SLVS-----------------------  451 (499)
Q Consensus       407 E~~il~~l~H~ni-----v~l~~~~~~~------~~~~~~~l~~~~~~~~~~-~l~~-----------------------  451 (499)
                      |+.++.+++|.++     ++++++|...      +....+++++|+.++.+. .++.                       
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~  301 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNM  301 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhc
Confidence            7777777776654     6677766431      112234567777554322 1110                       


Q ss_pred             -----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          452 -----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       452 -----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                           .+...+.++.|+++||+|||+      ++||.|++++.++.++++|||+++.
T Consensus       302 ~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~  358 (507)
T PLN03224        302 PQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVD  358 (507)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccc
Confidence                 011223345788889988866      7999999999999999999999854

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=6.6e-14  Score=131.55  Aligned_cols=205  Identities=22%  Similarity=0.269  Sum_probs=107.5

Q ss_pred             cccEEEcccCCCcccCC-ccccCCCCCCEEeccCCcCCccCC--ccccCCCCCCeEecccccccccCCcc-ccCcccccE
Q 010856           32 SLEDFRMYNCNISGGIP-EEISNLTNSTIVNLGGNKLNGSIP--ITLSKLQKLQGLGLEDNKLEGSIPDD-ICHLAELYR  107 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~  107 (499)
                      +|+...|.++.+..... .....+++++.|||+.|-+....+  .....+++|+.|+|+.|++....... -..++.|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            45555555555542111 234445666666666665543221  12345566666666666554221111 123455666


Q ss_pred             EeeecCCCCCc-CCccccCCccCCeeeccccC-CCCCCccccCCCCCcEEEcCCCcCCCCC-cccccCCCCccEEEccCC
Q 010856          108 LDLDGNKLSGS-LPACFSNLTSLRIVSLGSNK-LTSVPLTFWNLKDILNLNFSSNFLTSPL-PLEIGNLKVLIGIDFSMN  184 (499)
Q Consensus       108 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n  184 (499)
                      |.|+.|.++.. +......+|+|+.|+|..|. +..-.....-+..|++|||++|.+-+.. ......++.|..|+++.+
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            66666666521 11223445666666666663 2211222333455666666666654321 123445666666666666


Q ss_pred             cccccC-ccc-----ccCCcCCceeeCcCCcCCCC-CCccccCCCCCCEEeCCCCcCCc
Q 010856          185 NFSGVI-PTE-----IGGLKNLEYLFLGYNRLQGS-IPDSFGDLISLKFLNLSNNNLSG  236 (499)
Q Consensus       185 ~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~N~l~~  236 (499)
                      .+..+. |+.     ...+++|++|+++.|++.+. ....+..+++|+.|.+..|.++.
T Consensus       282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            665432 111     24567888888888888532 12445666778888888888764

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.37  E-value=5.1e-13  Score=127.06  Aligned_cols=127  Identities=16%  Similarity=0.064  Sum_probs=90.8

Q ss_pred             ccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHH---HhcCCCCCccccceeEEccccceeeeeecc
Q 010856          368 LIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEM---MKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~i---l~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .||+|+||.||++.. .+++.||+|.+.....   .....+.+|..+   +...+||||+.+++++...+  ..+.++||
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e~   78 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPD--KLCFILDL   78 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCC--eEEEEEec
Confidence            489999999999996 4689999999975431   122334455543   33458999999988887643  34456777


Q ss_pred             cCCCccc-cccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          441 SSASASA-SLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       441 ~~~~~~~-~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +.|+.+. .+..    .+.....++.|++.||+|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~  145 (279)
T cd05633          79 MNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLAC  145 (279)
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcce
Confidence            6555433 3322    223344456899999998876      799999999999999999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>PRK10345 hypothetical protein; Provisional

Probab=99.37  E-value=7.5e-13  Score=118.52  Aligned_cols=129  Identities=9%  Similarity=-0.044  Sum_probs=86.4

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcC-----CCCCccccceeEEcccc--cee
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNI-----RHRNLIKILHGVAVITF--TVC  434 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-----~H~niv~l~~~~~~~~~--~~~  434 (499)
                      +.....||+|+||.||.  .+ ++. .+||++........+.+.+|+++++.+     +||||++++|++.+...  ..+
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~-k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQ-RCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcC-eEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            34567899999999996  43 343 479998765544567899999999999     67999999999877431  223


Q ss_pred             eeeecccC---CCccccccccccccc--cccccccccc-eeecc------CCCcccEEEeeC----CCeEEEE-EEEe
Q 010856          435 LCLFHHSS---ASASASLVSSLTLSR--PAKGGGFRGC-VLWHV------GVDFAAFVFVLE----PGVEVIC-FVFE  495 (499)
Q Consensus       435 ~~l~~~~~---~~~~~~l~~~~~~~~--~~~~~i~~gl-~yLH~------~~~p~~~l~~~~----~~~~~~~-f~~~  495 (499)
                      ..++++.+   +++.+.+.. .....  ....|++.++ +|||+      ++||.||++...    +.++++| ||..
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~-~~~~e~~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQ-CRYEEDVAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             EEEecCCCCcchhHHHHHHc-ccccHhHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence            23566643   344444322 11111  1234555555 66655      899999999742    3799999 5543

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.36  E-value=7.1e-13  Score=127.04  Aligned_cols=137  Identities=16%  Similarity=0.129  Sum_probs=89.1

Q ss_pred             hhcccccccccCCcceEEEEEeC-C---CCEEEEEEeeccCCcc-----------HHHHHHHHHHHhcCCCCCcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-D---RMEVAVKVFNLQCGRA-----------FESFDVECEMMKNIRHRNLIKILHG  425 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~---~~~vavK~~~~~~~~~-----------~~~~~~E~~il~~l~H~niv~l~~~  425 (499)
                      ..|.+.+.||+|+||+||+|+.. +   +..+|+|+........           ......+...+..++|+||++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            56899999999999999999964 3   4566777543322111           0112334445667899999999987


Q ss_pred             EEccccc--eeeeeecccCCCcccccc----ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEE
Q 010856          426 VAVITFT--VCLCLFHHSSASASASLV----SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       426 ~~~~~~~--~~~~l~~~~~~~~~~~l~----~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~  493 (499)
                      +...+..  ..+.+++.........+.    ..+.....++.|+++||+|||+      ++||.|++++.++.++++|||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFG  171 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYG  171 (294)
T ss_pred             eeEecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcC
Confidence            6542211  112233433333222111    1222334567899999998866      899999999999999999999


Q ss_pred             Eeec
Q 010856          494 FEIL  497 (499)
Q Consensus       494 ~~~~  497 (499)
                      +++.
T Consensus       172 la~~  175 (294)
T PHA02882        172 IASH  175 (294)
T ss_pred             Ccee
Confidence            9864

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.36  E-value=6.2e-13  Score=127.09  Aligned_cols=134  Identities=15%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             hcccccccccCCcceEEEEEe----CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcC-CCCCccccceeEEccccc
Q 010856          362 EFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFT  432 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~  432 (499)
                      +|+..+.||+|+||.||+++.    .+++.||+|++++..    ....+.+.+|++++.++ +||||+++++++...+  
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~--   78 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDT--   78 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCC--
Confidence            367788999999999999884    357889999997542    22346688999999999 6999999998776532  


Q ss_pred             eeeeeecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ...++++|+.++ +...+...    ......++.|+++||+|||+      +++|.|+++..++.++++|||+++.
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~  154 (288)
T cd05583          79 KLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKE  154 (288)
T ss_pred             EEEEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccc
Confidence            344577777554 33332221    22233445789999998877      6899999999999999999998754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.36  E-value=3.2e-13  Score=133.50  Aligned_cols=128  Identities=17%  Similarity=0.223  Sum_probs=97.8

Q ss_pred             ccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCCcc
Q 010856          368 LIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASAS  446 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~  446 (499)
                      ++|+|.||+||.|+.. +...+|||-+........+-...||++.++++|.|||+.+|.|....  .+-+.+|...|+.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senG--f~kIFMEqVPGGSL  659 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENG--FFKIFMEQVPGGSL  659 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCC--eEEEEeecCCCCcH
Confidence            6999999999999964 56679999998777667778899999999999999999999876533  44445666665554


Q ss_pred             c-cccccccccc---c----ccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeec
Q 010856          447 A-SLVSSLTLSR---P----AKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEIL  497 (499)
Q Consensus       447 ~-~l~~~~~~~~---~----~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~  497 (499)
                      . .++..|...+   .    ...||.+||.|||+      ++|=.|+|++.-. -+||+|||-+.-
T Consensus       660 SsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKR  725 (1226)
T KOG4279|consen  660 SSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKR  725 (1226)
T ss_pred             HHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchh
Confidence            4 4444443221   1    13899999999987      7888999998754 567889997643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.35  E-value=1.2e-13  Score=123.64  Aligned_cols=129  Identities=25%  Similarity=0.240  Sum_probs=77.2

Q ss_pred             ccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCc
Q 010856          127 TSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLG  206 (499)
Q Consensus       127 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  206 (499)
                      ..|+.|||++|.|+.+..+..-.|.++.|++++|.|..+  ..+..+++|+.||||+|.++.. ..+-..+-+.++|.|+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehh
Confidence            456677777777777666666667777777777766543  2355666666666666666532 2333455666666666


Q ss_pred             CCcCCCCCCccccCCCCCCEEeCCCCcCCccCc-ccccCCCCCCEEEccCCcCcc
Q 010856          207 YNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP-ASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       207 ~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~  260 (499)
                      +|.|.+.  ..+..+-+|..||+++|+|..... ..++++|-|+.+.|.+|++.+
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            6666532  345555666666666666653221 345556666666666666653

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=3.2e-14  Score=135.70  Aligned_cols=138  Identities=12%  Similarity=0.149  Sum_probs=110.6

Q ss_pred             HhhhcccccccccCCcceEEEEEeCC-CCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ...++.....+|-|+||.|-+++... ...+|+|++++..   ..+.+.+..|-+||...+.|.||++|..|.+.+|. +
T Consensus       418 ~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyv-Y  496 (732)
T KOG0614|consen  418 KLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYV-Y  496 (732)
T ss_pred             chhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhh-h
Confidence            34556667889999999999998643 3358999997754   45567789999999999999999999999886655 3


Q ss_pred             eeeecccCCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.++-|++|++...++..+..    .+-++..+.+|++|||+      +.||+|.+++.++=+|+.||||+.-
T Consensus       497 mLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKk  569 (732)
T KOG0614|consen  497 MLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKK  569 (732)
T ss_pred             hhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHH
Confidence            446678899877766654443    34445788999999999      8999999999999999999999853

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.35  E-value=9.5e-13  Score=123.77  Aligned_cols=129  Identities=16%  Similarity=0.115  Sum_probs=94.6

Q ss_pred             cccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHH-hcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMM-KNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il-~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.+|+|+||.||+|.. .+|+.||+|.+.+...   .....+..|..++ ...+||||+++++++...+  ..++++||+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e~~   79 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKD--YLYLVMEYL   79 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCC--eEEEEEecc
Confidence            5689999999999996 4689999999865431   1223445565544 4569999999999887633  445577777


Q ss_pred             CCCccccc-cc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          442 SASASASL-VS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       442 ~~~~~~~l-~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .|+.+..+ ..    .......++.|++.||+|||+      +++|.|+++..++.++++|||++..
T Consensus        80 ~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  146 (260)
T cd05611          80 NGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRN  146 (260)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeeccccee
Confidence            65543332 21    223345556899999999887      7999999999999999999998764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.35  E-value=6.3e-13  Score=129.55  Aligned_cols=126  Identities=19%  Similarity=0.184  Sum_probs=94.3

Q ss_pred             cccccC--CcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKG--GFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G--~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      ..||+|  +||+||+++. .+|+.||+|++.....  ...+.+.+|+.+++.++||||+++++++...+  ....+++++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~--~~~~v~e~~   81 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGS--WLWVISPFM   81 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCC--ceEEEEecc
Confidence            346666  8999999996 5799999999875432  23467889999999999999999999987744  334566776


Q ss_pred             CCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          442 SAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       442 ~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      .++ +.+.+..      .+.....++.|++.||+|||+      ++||.|+++..++.+++.||+.
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~  147 (328)
T cd08226          82 AYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSH  147 (328)
T ss_pred             cCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHH
Confidence            554 3332221      112233456899999998876      8999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.35  E-value=7e-13  Score=126.05  Aligned_cols=127  Identities=15%  Similarity=0.066  Sum_probs=90.6

Q ss_pred             ccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHH---HHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          368 LIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVEC---EMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~---~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .||+|+||.||+|+. .+++.||+|.+.+...   .....+..|.   +.++..+||+|+++++++...+  ....++||
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~v~e~   78 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--KLSFILDL   78 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCC--EEEEEEec
Confidence            479999999999985 4689999999976431   1122344444   3455568999999998877643  33446677


Q ss_pred             cCCCcc-ccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          441 SSASAS-ASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       441 ~~~~~~-~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +.|+.+ ..+..    .+.....++.|+++|++|||+      +++|.|++++.++.++++|||++.
T Consensus        79 ~~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~  145 (278)
T cd05606          79 MNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLAC  145 (278)
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCcc
Confidence            655433 32322    222344456899999999975      799999999999999999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=3e-13  Score=130.65  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .-..|+..+.||+||.+.||++...+.+.||+|++....  .+...-|.+|++.+.++ .|.+||++++|=.. |. ..+
T Consensus       359 kg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-d~-~lY  436 (677)
T KOG0596|consen  359 KGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-DG-YLY  436 (677)
T ss_pred             CcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-Cc-eEE
Confidence            335688899999999999999998888889988875432  34467799999999999 59999999998665 32 345


Q ss_pred             eeecccCCCccccccccccc-----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSSLTL-----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~~~~-----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++||-.-++...+...+..     .+.+..|++.|+.|+|.      |.||+|||+++ |.+|+||||++-.
T Consensus       437 mvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVk-G~LKLIDFGIA~a  508 (677)
T KOG0596|consen  437 MVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVK-GRLKLIDFGIANA  508 (677)
T ss_pred             EEeecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEe-eeEEeeeechhcc
Confidence            57888776665555544332     33344777888877655      89999999975 8999999999854

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.35  E-value=1.3e-13  Score=135.75  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=106.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|.....+|+|+||.||+++. .+++..|+|+++.....+.+-..+|+-+++..+|||||.++|-|...+  ..++-+
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~d--klwicM   91 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRD--KLWICM   91 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhc--CcEEEE
Confidence            45788899999999999999995 578999999998876666677789999999999999999999887633  445567


Q ss_pred             cccCCCcccccc-cccccc----ccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          439 HHSSASASASLV-SSLTLS----RPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       439 ~~~~~~~~~~l~-~~~~~~----~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ||++|+..+.+. -.....    ...++...+|++|||+      ++|=+|+++++.+-|++.|||.+
T Consensus        92 EycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvs  159 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVS  159 (829)
T ss_pred             EecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCch
Confidence            777666555543 222222    2224777899999988      45569999999999999999975

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.5e-13  Score=129.12  Aligned_cols=161  Identities=21%  Similarity=0.193  Sum_probs=87.0

Q ss_pred             cCCCCCCEEeccCCcCCccCC-ccccCCCCCCeEecccccccccC--CccccCcccccEEeeecCCCCCcCCcc-ccCCc
Q 010856           52 SNLTNSTIVNLGGNKLNGSIP-ITLSKLQKLQGLGLEDNKLEGSI--PDDICHLAELYRLDLDGNKLSGSLPAC-FSNLT  127 (499)
Q Consensus        52 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~  127 (499)
                      +++.+|++..|.+..+..... .....+++++.|||+.|-+..-.  ......+++|+.|+|+.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345667777777776652221 24556777777777777665321  123456777777777777766322111 12356


Q ss_pred             cCCeeeccccCCCC--CCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccC-cccccCCcCCceee
Q 010856          128 SLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI-PTEIGGLKNLEYLF  204 (499)
Q Consensus       128 ~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~  204 (499)
                      .|+.|.|+.|.++.  +......+|+|+.|+|..|..-........-+..|+.|||++|++-... -.....++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            67777777776664  3334455666666766666422222233334455556666665554221 12234455555555


Q ss_pred             CcCCcCCC
Q 010856          205 LGYNRLQG  212 (499)
Q Consensus       205 L~~n~l~~  212 (499)
                      ++.+.+.+
T Consensus       278 ls~tgi~s  285 (505)
T KOG3207|consen  278 LSSTGIAS  285 (505)
T ss_pred             ccccCcch
Confidence            55555543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.33  E-value=1.2e-12  Score=117.57  Aligned_cols=132  Identities=11%  Similarity=0.009  Sum_probs=94.7

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHH---H------HHHHHHHHhcCCCCCccccceeEEccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE---S------FDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~---~------~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      .++|...+++|.|+||.||.... ++..+|+|.+.........   .      +.+|++.+.++.||+|....+++.+.+
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            46799999999999999999765 5668999999755422222   2      689999999999999999998876543


Q ss_pred             cc------eeeeeecccCCCccccccccccccccccccccccce------eeccCCCcccEEEeeCCCeEEEEEEEee
Q 010856          431 FT------VCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCV------LWHVGVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       431 ~~------~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~------yLH~~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +.      ...+++||+.|.....+.   ........+++.++.      +.|.|.+|.||+++.++ +++||||...
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~---~~~~~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~  182 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMP---EISEDVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKR  182 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhh---hccHHHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcc
Confidence            22      345688888876443331   111222234444444      55669999999997655 9999999754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=3.7e-14  Score=129.72  Aligned_cols=184  Identities=23%  Similarity=0.241  Sum_probs=121.5

Q ss_pred             cCCCCCCeEecccccccccCCcc----ccCcccccEEeeecCCCCCcCC-------------ccccCCccCCeeeccccC
Q 010856           76 SKLQKLQGLGLEDNKLEGSIPDD----ICHLAELYRLDLDGNKLSGSLP-------------ACFSNLTSLRIVSLGSNK  138 (499)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~  138 (499)
                      ..+++|++|+||+|-+....+..    +.+...|+.|+|.+|.+.....             .....-+.|+.+...+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            34455666666666554333322    2344556666666665542111             112334678888888888


Q ss_pred             CCCCC-----ccccCCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCccccc----CcccccCCcCCceeeC
Q 010856          139 LTSVP-----LTFWNLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFL  205 (499)
Q Consensus       139 l~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L  205 (499)
                      +..-+     ..+...+.|+.+.+..|.|...    ....|..+++|+.|||..|-++..    ....++.+++|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            87643     3466678888888888887642    234567788888888888887643    3345667888999999


Q ss_pred             cCCcCCCCCCccc-----cCCCCCCEEeCCCCcCCcc----CcccccCCCCCCEEEccCCcCc
Q 010856          206 GYNRLQGSIPDSF-----GDLISLKFLNLSNNNLSGA----IPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       206 ~~n~l~~~~~~~l-----~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      ++|.+.......|     ...|+|+.|.+.+|.|+..    +.......+.|..|+|++|++.
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9998876443333     3468999999999998732    3344556789999999999994

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.32  E-value=1.2e-12  Score=126.87  Aligned_cols=128  Identities=12%  Similarity=0.058  Sum_probs=93.2

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCC
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSA  443 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~  443 (499)
                      .+..|.|+++.||++.. +++.||+|++....  ....+.+.+|+++++.++||||+++++++...+  ..+++++|+.+
T Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~--~~~~~~e~~~~   83 (314)
T cd08216           7 GKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDS--ELYVVSPLMAY   83 (314)
T ss_pred             hHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCC--eEEEEEeccCC
Confidence            34444555544444443 78999999997652  344578999999999999999999999887643  34556777765


Q ss_pred             Ccccc-ccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          444 SASAS-LVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       444 ~~~~~-l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +.... +..      .+.....++.|++.||+|||+      +++|.|+++++++.++++|||.+.
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~  149 (314)
T cd08216          84 GSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSV  149 (314)
T ss_pred             CCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccce
Confidence            54332 221      122334456899999999887      799999999999999999999765

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.32  E-value=9.3e-14  Score=127.15  Aligned_cols=231  Identities=20%  Similarity=0.201  Sum_probs=141.2

Q ss_pred             ccCCCCCCEEeccCCcCCcc----CCccccCCCCCCeEeccccc---ccccCCc-------cccCcccccEEeeecCCCC
Q 010856           51 ISNLTNSTIVNLGGNKLNGS----IPITLSKLQKLQGLGLEDNK---LEGSIPD-------DICHLAELYRLDLDGNKLS  116 (499)
Q Consensus        51 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~~-------~~~~l~~L~~L~L~~n~l~  116 (499)
                      ......++.|+|++|.+...    +...+.+.++|+..++++--   ....+|+       ++...++|++|+||+|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34445666666666665431    12234455566666665421   1122222       3445567888888888876


Q ss_pred             CcCCcc----ccCCccCCeeeccccCCCCCC--------------ccccCCCCCcEEEcCCCcCCCCC----cccccCCC
Q 010856          117 GSLPAC----FSNLTSLRIVSLGSNKLTSVP--------------LTFWNLKDILNLNFSSNFLTSPL----PLEIGNLK  174 (499)
Q Consensus       117 ~~~~~~----~~~l~~L~~L~L~~n~l~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~  174 (499)
                      ...+..    +.++..|++|.|.+|.+....              .....-+.|+.+...+|++.+-.    ...|...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            444433    355678888888888775421              12334567888888888876522    23456667


Q ss_pred             CccEEEccCCccccc----CcccccCCcCCceeeCcCCcCCCC----CCccccCCCCCCEEeCCCCcCCccCcccc----
Q 010856          175 VLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNLSNNNLSGAIPASL----  242 (499)
Q Consensus       175 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~----  242 (499)
                      .|+.+.++.|.|...    ....|..+++|+.|||.+|-++..    ....+..+++|+.|++++|.+.......|    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            888888888877532    223456788888888888877642    23456677788888888888765443332    


Q ss_pred             -cCCCCCCEEEccCCcCcccC-----CCCCCCCCccccccCCCcC
Q 010856          243 -EKLSYLENLNLSFNKLEGEI-----PRGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       243 -~~l~~L~~L~l~~N~l~~~~-----~~~~~~~~l~~~~l~~N~~  281 (499)
                       ...|+|+.|.+.+|.++..-     -....-+.+..+.+.||.+
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             23578888888888886311     0012255677778888875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.32  E-value=1.4e-12  Score=112.26  Aligned_cols=84  Identities=25%  Similarity=0.309  Sum_probs=21.3

Q ss_pred             CCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCC-CccccCCCCCCEEe
Q 010856          150 KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI-PDSFGDLISLKFLN  228 (499)
Q Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  228 (499)
                      .+|+.|++++|.|+.+  ..+..++.|+.|++++|+|+...+.....+++|++|++++|+|.+.. -..+..+++|+.|+
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            3344444444444322  12333444444444444444322111123445555555555444321 13344455555555


Q ss_pred             CCCCcCC
Q 010856          229 LSNNNLS  235 (499)
Q Consensus       229 l~~N~l~  235 (499)
                      +.+|+++
T Consensus       120 L~~NPv~  126 (175)
T PF14580_consen  120 LEGNPVC  126 (175)
T ss_dssp             -TT-GGG
T ss_pred             ccCCccc
Confidence            5555554

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.31  E-value=1.3e-12  Score=132.67  Aligned_cols=146  Identities=18%  Similarity=0.222  Sum_probs=110.0

Q ss_pred             CHHHHHHHhhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          352 SYLELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       352 ~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      .++.+...++.|++..++|.|.+|.||+++ .++++..|+|+++..... .++...|.+|++.. +|||++.++|+|...
T Consensus        10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~-deEiE~eynil~~~~~hpnv~~fyg~~~k~   88 (953)
T KOG0587|consen   10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE-EEEIELEYNMLKKYSHHPNVATFYGAFIKK   88 (953)
T ss_pred             chhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc-cHHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence            344445566778899999999999999999 467999999999876543 36678888998876 799999999998652


Q ss_pred             c---cceeeeeecccCCCccccccc-------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEE
Q 010856          430 T---FTVCLCLFHHSSASASASLVS-------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       430 ~---~~~~~~l~~~~~~~~~~~l~~-------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~  493 (499)
                      +   .-+.+.++|+++|+....+..       .+.+..-+++.+++|+++||.      ++|=.|||++.+++||++|||
T Consensus        89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFG  168 (953)
T KOG0587|consen   89 DPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFG  168 (953)
T ss_pred             cCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeee
Confidence            2   235667888887775444321       222222234777888887766      788899999999999999999


Q ss_pred             Eeecc
Q 010856          494 FEILL  498 (499)
Q Consensus       494 ~~~~~  498 (499)
                      .+.-|
T Consensus       169 vSaQl  173 (953)
T KOG0587|consen  169 VSAQL  173 (953)
T ss_pred             eeeee
Confidence            98643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=1.5e-12  Score=112.09  Aligned_cols=108  Identities=22%  Similarity=0.317  Sum_probs=26.6

Q ss_pred             cCCCCCCeEecccccccccCCcccc-CcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcccc-CCCCCc
Q 010856           76 SKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFW-NLKDIL  153 (499)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~  153 (499)
                      .+..++++|+|.+|.|+.+  +.+. .+.+|+.|++++|.|+..  +.+..++.|+.|++++|+|++++..+. .+++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            3444566666666666633  2333 355666666666666643  235556666666666666666544332 356666


Q ss_pred             EEEcCCCcCCCCCc-ccccCCCCccEEEccCCccc
Q 010856          154 NLNFSSNFLTSPLP-LEIGNLKVLIGIDFSMNNFS  187 (499)
Q Consensus       154 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~  187 (499)
                      +|++++|+|.+... ..+..+++|+.|++.+|.++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666554211 22333444444444444443

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.30  E-value=2.7e-12  Score=119.85  Aligned_cols=127  Identities=15%  Similarity=0.121  Sum_probs=97.3

Q ss_pred             cccCCcceEEEEEeC-CCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc-CC
Q 010856          369 IGKGGFGSVYKARLG-DRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS-SA  443 (499)
Q Consensus       369 lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~-~~  443 (499)
                      +|+|+||.||++... +++.||+|.+.....   ...+.+.+|++++++++||||+++++.+...+  ..+++++++ ++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~v~e~~~~~   78 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEE--KLYLVLEYAPGG   78 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCC--eeEEEEecCCCC
Confidence            699999999999964 589999999976542   24567899999999999999999998876533  344566666 55


Q ss_pred             Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          444 SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       444 ~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+.+.+...    +.....++.|++.|+.|+|+      +++|.|+++++++.++++|||....
T Consensus        79 ~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~  142 (250)
T cd05123          79 ELFSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKE  142 (250)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCccee
Confidence            544443322    22233445789999998866      7999999999999999999998764

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.30  E-value=4.5e-12  Score=119.70  Aligned_cols=138  Identities=12%  Similarity=0.043  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhccccccc--ccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhc-CCCCCccccceeEEc
Q 010856          353 YLELFRATDEFSENNLI--GKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKN-IRHRNLIKILHGVAV  428 (499)
Q Consensus       353 ~~~~~~~~~~~~~~~~l--g~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~-l~H~niv~l~~~~~~  428 (499)
                      ..+.....++|+..+.+  |+|+||.||+++. .++..+|+|.+.......     .|+.+... .+||||+++++++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~-----~e~~~~~~~~~h~~iv~~~~~~~~   80 (267)
T PHA03390          6 LSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA-----IEPMVHQLMKDNPNFIKLYYSVTT   80 (267)
T ss_pred             HHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch-----hhHHHHHHhhcCCCEEEEEEEEec
Confidence            34455556677777776  9999999999995 578899999987543211     12222221 279999999999877


Q ss_pred             cccceeeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEee
Q 010856          429 ITFTVCLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEI  496 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~  496 (499)
                      .+  ..+.++|++.+ ++...+..    .+.....++.|+++|++|||+      +++|.|+++.+++ .++++|||++.
T Consensus        81 ~~--~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~  158 (267)
T PHA03390         81 LK--GHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCK  158 (267)
T ss_pred             CC--eeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccce
Confidence            44  45567777754 44333322    223334456899999998877      7999999998887 99999999876


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       159 ~  159 (267)
T PHA03390        159 I  159 (267)
T ss_pred             e
Confidence            4

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.29  E-value=2.7e-13  Score=135.84  Aligned_cols=259  Identities=27%  Similarity=0.299  Sum_probs=182.4

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      .++.++...+.+......  ...+. .++.+++..|.+.. .-..+..+.+|+.|++.+|.|..+.. .+..+++|++|+
T Consensus        50 ~~~~~~~~~~~~~~~~~~--~~~l~-~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~  124 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL--VESLT-SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLD  124 (414)
T ss_pred             hhhhhcchhccccchhhh--HHHhH-hHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchhee
Confidence            445555555544322111  12334 68888888888874 23347778899999999999984432 367889999999


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc-ccCCCCCcEEEcCCCcCCC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTS  164 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~  164 (499)
                      +++|.|+.+  ..+..++.|+.|++++|.|+..  ..+..+++|+.+++++|++..+... ...+.+++.+++.+|.+..
T Consensus       125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  125 LSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence            999999865  3567777899999999999854  4466688999999999999987654 4778899999999998874


Q ss_pred             CCcccccCCCCccEEEccCCcccccCcccccCCcC--CceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          165 PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKN--LEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      +  ..+..+..+..+++..|.++...  .+..+..  |+.+++++|++.. .+..+..+..+..|++.+|++...  ..+
T Consensus       201 i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~  273 (414)
T KOG0531|consen  201 I--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGL  273 (414)
T ss_pred             c--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccc
Confidence            3  33444555666688888887542  2333444  8999999999883 336677888899999999988743  234


Q ss_pred             cCCCCCCEEEccCCcCccc---CCC--CCCCCCccccccCCCc
Q 010856          243 EKLSYLENLNLSFNKLEGE---IPR--GGSFGNFSAESFEGNE  280 (499)
Q Consensus       243 ~~l~~L~~L~l~~N~l~~~---~~~--~~~~~~l~~~~l~~N~  280 (499)
                      ...+.+..+....|++...   ...  ....+.+....+.+||
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (414)
T KOG0531|consen  274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP  316 (414)
T ss_pred             cccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence            5567777888888887632   111  2345566666777776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=6.1e-13  Score=119.24  Aligned_cols=133  Identities=24%  Similarity=0.308  Sum_probs=110.5

Q ss_pred             CcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEE
Q 010856          101 HLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID  180 (499)
Q Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  180 (499)
                      ....|+++||++|.|+ .+.++..-.|.++.|++++|.|+.+.. +..+++|+.|||++|.++. ....-..+-++++|.
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            3467899999999998 555677778999999999999998775 8889999999999999875 334445678899999


Q ss_pred             ccCCcccccCcccccCCcCCceeeCcCCcCCCCC-CccccCCCCCCEEeCCCCcCCccC
Q 010856          181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI-PDSFGDLISLKFLNLSNNNLSGAI  238 (499)
Q Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~  238 (499)
                      |++|.|...  ..+..+-+|..||+++|+|.... ...++++|.|+.+.|.+|++.+..
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            999999744  56778889999999999998532 456899999999999999998543

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.28  E-value=1.6e-12  Score=122.28  Aligned_cols=133  Identities=14%  Similarity=0.087  Sum_probs=95.8

Q ss_pred             hcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .|.+.+.||+|+||.||++... .+..+++|.++...     .....++.+|+.+++.++||||+++++++...+  ...
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   78 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERD--AFC   78 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC--ceE
Confidence            3778899999999999999853 45556666665322     223446778999999999999999999886643  345


Q ss_pred             eeecccCCCcccc-cc--------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASAS-LV--------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~-l~--------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+++++.++.... +.        ..+.....++.|+++|++|||+      +++|.|+++.+ +.++++|||++..
T Consensus        79 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~  154 (260)
T cd08222          79 IITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRL  154 (260)
T ss_pred             EEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceee
Confidence            5777776554332 21        1122334446889999999877      78999999864 6799999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.28  E-value=4.9e-13  Score=133.94  Aligned_cols=238  Identities=27%  Similarity=0.281  Sum_probs=174.4

Q ss_pred             cccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEe
Q 010856           30 SHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLD  109 (499)
Q Consensus        30 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  109 (499)
                      +..++.++...+.+....-. ...+..++.+++..|.+.. .-..+..+.+|+.|++.+|.|..+. ..+..+++|++|+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~  124 (414)
T KOG0531|consen   48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLD  124 (414)
T ss_pred             cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchhee
Confidence            33677777777665533222 2567788888899999884 3344788899999999999998543 3378899999999


Q ss_pred             eecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCc-ccccCCCCccEEEccCCcccc
Q 010856          110 LDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLP-LEIGNLKVLIGIDFSMNNFSG  188 (499)
Q Consensus       110 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  188 (499)
                      +++|.|+.+.  .+..++.|+.|++++|.|+.+. .+..++.|+.+++++|++..+.+ . ...+.+++.+.+.+|.+..
T Consensus       125 ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  125 LSFNKITKLE--GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cccccccccc--chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            9999999663  4667788999999999999876 45558999999999999986544 2 4778899999999999874


Q ss_pred             cCcccccCCcCCceeeCcCCcCCCCCCccccCCCC--CCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCC
Q 010856          189 VIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIS--LKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG  266 (499)
Q Consensus       189 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  266 (499)
                      .  ..+..+..+..+++..|.++...  .+..++.  |+.+++++|++.. .+..+..+..+..+++..|++...-. ..
T Consensus       201 i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~-~~  274 (414)
T KOG0531|consen  201 I--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG-LE  274 (414)
T ss_pred             c--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc-cc
Confidence            4  45566667777789999888542  2333343  8999999999984 33567778889999999999874322 22


Q ss_pred             CCCCccccccCCCc
Q 010856          267 SFGNFSAESFEGNE  280 (499)
Q Consensus       267 ~~~~l~~~~l~~N~  280 (499)
                      ..+.+..+....|+
T Consensus       275 ~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  275 RLPKLSELWLNDNK  288 (414)
T ss_pred             ccchHHHhccCcch
Confidence            23334444444554

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.27  E-value=6.3e-12  Score=115.12  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=102.1

Q ss_pred             cccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          363 FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      |...+.+|+|++|.||+|... +++.+|+|.+...... ..+.+.+|++.+++++|+|++++++++...+  ....++++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~--~~~~v~e~   78 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPE--PLYLVMEY   78 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCC--ceEEEEec
Confidence            456688999999999999975 4889999999866544 5678999999999999999999999887633  34456677


Q ss_pred             cCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          441 SSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       441 ~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +.+ .+...+...     +.....++.+++++++|||+      +++|.|+++++++.++++|||+....
T Consensus        79 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~  148 (225)
T smart00221       79 CEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFI  148 (225)
T ss_pred             cCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEe
Confidence            665 433332221     12233445778888877765      79999999999999999999987653

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.27  E-value=3.2e-13  Score=121.04  Aligned_cols=133  Identities=13%  Similarity=0.072  Sum_probs=97.4

Q ss_pred             Hhhhccc-ccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhc-CCCCCccccceeEEcc-c-cce
Q 010856          359 ATDEFSE-NNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKN-IRHRNLIKILHGVAVI-T-FTV  433 (499)
Q Consensus       359 ~~~~~~~-~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~-l~H~niv~l~~~~~~~-~-~~~  433 (499)
                      .+++|.+ ..+||-|--|+|..|.. ++++.+|+|++..     ..+..+|++..-. -.|||||+++++|... . ..-
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-----s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc  133 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-----SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKC  133 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-----CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence            4566655 46799999999999985 5799999999853     3456689987544 4799999999988541 1 223


Q ss_pred             eeeeeccc-CCCcccccccccc------ccccccccccccceeecc------CCCcccEEEeeC---CCeEEEEEEEee
Q 010856          434 CLCLFHHS-SASASASLVSSLT------LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE---PGVEVICFVFEI  496 (499)
Q Consensus       434 ~~~l~~~~-~~~~~~~l~~~~~------~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~---~~~~~~~f~~~~  496 (499)
                      ..+++|+| +|+++..+...+.      ....+..||+.|+.|||+      |+||+|+|+...   --+|++||||+.
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK  212 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAK  212 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEeccccccc
Confidence            45577887 4556555544332      233344889999999987      899999999753   478999999985

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.26  E-value=2.3e-12  Score=134.65  Aligned_cols=140  Identities=14%  Similarity=0.150  Sum_probs=107.0

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEe----CC----CCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCcccccee
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARL----GD----RMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHG  425 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~----~~----~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~  425 (499)
                      ++....+....+.+|+|.||.||+|..    +.    ...||||.++... ..+.+.+..|+++|+.+ +|+||+.++|+
T Consensus       291 ~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~  370 (609)
T KOG0200|consen  291 WEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGA  370 (609)
T ss_pred             eeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheee
Confidence            444445556667999999999999983    12    4579999997654 34567899999999998 79999999999


Q ss_pred             EEccccceeeeeecccCCCccccccccc---cc-----------------cccccccccccceeec------cCCCcccE
Q 010856          426 VAVITFTVCLCLFHHSSASASASLVSSL---TL-----------------SRPAKGGGFRGCVLWH------VGVDFAAF  479 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~---~~-----------------~~~~~~~i~~gl~yLH------~~~~p~~~  479 (499)
                      |.. +....++++++..|++...++...   ..                 .-..+.|||.||+||+      +|.-.-||
T Consensus       371 ~t~-~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNV  449 (609)
T KOG0200|consen  371 CTQ-DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNV  449 (609)
T ss_pred             ecc-CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhE
Confidence            987 444555566667888777665544   00                 1122589999999974      56777899


Q ss_pred             EEeeCCCeEEEEEEEee
Q 010856          480 VFVLEPGVEVICFVFEI  496 (499)
Q Consensus       480 l~~~~~~~~~~~f~~~~  496 (499)
                      ++..+..++++|||+++
T Consensus       450 Li~~~~~~kIaDFGlar  466 (609)
T KOG0200|consen  450 LITKNKVIKIADFGLAR  466 (609)
T ss_pred             EecCCCEEEEcccccee
Confidence            99999999999999997

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.26  E-value=7.5e-13  Score=139.54  Aligned_cols=139  Identities=20%  Similarity=0.249  Sum_probs=105.3

Q ss_pred             HHhhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..+-+|.....||.|.||.||-|. ..+|...|+|-+.-..  ....+.+.+|+.++..+.|||+|+.||+=..-|  ..
T Consensus      1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe--kv 1309 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE--KV 1309 (1509)
T ss_pred             cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHH--HH
Confidence            334567778899999999999999 5679999999885443  344567889999999999999999998754423  22


Q ss_pred             eeeecccCCCccccccccccc-----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSASASASLVSSLTL-----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .+.+||+.|+.+..+...++.     .+....|++.|++|||+      ++||+||+++..+-.|..|||-++-.
T Consensus      1310 ~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki 1384 (1509)
T KOG4645|consen 1310 YIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKI 1384 (1509)
T ss_pred             HHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEe
Confidence            334566665555544433322     23334799999999987      89999999999999999999998743

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.26  E-value=2.1e-12  Score=123.01  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=98.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-----C---CCccccceeEEc--
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-----H---RNLIKILHGVAV--  428 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-----H---~niv~l~~~~~~--  428 (499)
                      .+.|...++||-|.|++||+|.. .+.+.||+|+++... ...+..+.||+++++++     |   ..||+|++.|..  
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAq-hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQ-HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhh-HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            36799999999999999999995 568899999997543 34567889999998763     3   379999998854  


Q ss_pred             cccceeeeeecccCCCcccccccc------ccccccccccccccceeecc-------CCCcccEEEeeC
Q 010856          429 ITFTVCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLE  484 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~  484 (499)
                      +...+.-+++|+++..++..+...      ...++++++||+.||.|||+       ++||+|+|+...
T Consensus       156 pNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  156 PNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             CCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence            455666778999988887766532      23467888999999999988       899999998544

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=2.3e-12  Score=126.33  Aligned_cols=133  Identities=12%  Similarity=0.105  Sum_probs=99.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      +.|...+.||-|+||+|.+++. .+...||+|.+.+.+   ..+...+..|-.||+..+.+.||+||.-|.+.+  ..+.
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkd--nLYF  706 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKD--NLYF  706 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCC--ceEE
Confidence            4467788899999999999984 567899999998765   344566889999999999999999997777644  3344


Q ss_pred             eecccCCC-ccccccccccc----ccccc------ccccccceeeccCCCcccEEEeeCCCeEEEEEEEe
Q 010856          437 LFHHSSAS-ASASLVSSLTL----SRPAK------GGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~~~~~----~~~~~------~~i~~gl~yLH~~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      +++|+.|+ +-..+..-+..    .+-.+      ..-++-|.|+|+++||.|||++.++-.|+.|||+-
T Consensus       707 VMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  707 VMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC  776 (1034)
T ss_pred             EEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeecccc
Confidence            67777555 33333222222    22222      34456677899999999999999999999999974

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.24  E-value=1.1e-11  Score=111.23  Aligned_cols=137  Identities=15%  Similarity=0.017  Sum_probs=93.3

Q ss_pred             HHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCc----------------------cHHHHHHHHHHHh
Q 010856          355 ELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR----------------------AFESFDVECEMMK  412 (499)
Q Consensus       355 ~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~----------------------~~~~~~~E~~il~  412 (499)
                      ++...-..|...+.||+|+||.||+|..++|+.||||++......                      ....+.+|..++.
T Consensus         9 ~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   88 (198)
T cd05144           9 TLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALK   88 (198)
T ss_pred             HHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHH
Confidence            444443447778999999999999999888999999987643200                      0123678899999


Q ss_pred             cCCCCC--ccccceeEEccccceeeeeecccCCCccccccccccccccccccccccce------eeccCCCcccEEEeeC
Q 010856          413 NIRHRN--LIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCV------LWHVGVDFAAFVFVLE  484 (499)
Q Consensus       413 ~l~H~n--iv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~------yLH~~~~p~~~l~~~~  484 (499)
                      .+.|++  +++.++.      ...+++++++.|.....+... .....++.+++.++.      .+|.+++|.|++++.+
T Consensus        89 ~l~~~~i~v~~~~~~------~~~~lv~e~~~g~~L~~~~~~-~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~  161 (198)
T cd05144          89 ALYEEGFPVPKPIDW------NRHAVVMEYIDGVELYRVRVL-EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDD  161 (198)
T ss_pred             HHHHcCCCCCceeec------CCceEEEEEeCCcchhhcccc-ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCC
Confidence            998875  3333321      122457788877654433221 222344456666665      4556899999999988


Q ss_pred             CCeEEEEEEEeecc
Q 010856          485 PGVEVICFVFEILL  498 (499)
Q Consensus       485 ~~~~~~~f~~~~~~  498 (499)
                      +.++++|||.++.+
T Consensus       162 ~~~~liDfg~~~~~  175 (198)
T cd05144         162 EKIYIIDWPQMVST  175 (198)
T ss_pred             CcEEEEECCccccC
Confidence            99999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.23  E-value=1.8e-11  Score=126.74  Aligned_cols=131  Identities=11%  Similarity=0.021  Sum_probs=91.6

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEe-eccC-C------ccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVF-NLQC-G------RAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~-~~~~-~------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      ...|...+.||+|+||+||+|.+... .+++|+. .+.. .      ...+++.+|+++++.++|++++....++...+ 
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~-  409 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPE-  409 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCC-
Confidence            34456678999999999999987444 3444433 2211 1      11356889999999999999988776655432 


Q ss_pred             ceeeeeecccCCCccccccccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ...+++||+.|+.+.....   ....++.|++++++|||+      |++|.||++ +++.++++|||+++.
T Consensus       410 -~~~lv~E~~~g~~L~~~l~---~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        410 -EKTIVMEYIGGKDLKDVLE---GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             -CCEEEEEecCCCcHHHHHH---HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence             2345777876654333211   234456778888887765      899999999 788999999999875

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.22  E-value=1.1e-11  Score=128.44  Aligned_cols=135  Identities=17%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CC----CCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEc----c
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GD----RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV----I  429 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~----~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~----~  429 (499)
                      ..++|...+.||+|+||.||+|+. .+    +..||+|++....  ..+.+..|  .+....+.+++.+...+..    .
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~--~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYG--AVEIWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccc--hhHHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            567899999999999999999996 35    7899999876432  11222222  1122223333333222111    1


Q ss_pred             ccceeeeeecccCCCcccc-cccc------------------------ccccccccccccccceeecc------CCCccc
Q 010856          430 TFTVCLCLFHHSSASASAS-LVSS------------------------LTLSRPAKGGGFRGCVLWHV------GVDFAA  478 (499)
Q Consensus       430 ~~~~~~~l~~~~~~~~~~~-l~~~------------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~  478 (499)
                      +....+++++|++++.+.. +...                        ......++.|++.||+|||+      ++||.|
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~N  285 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQN  285 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHH
Confidence            2234455666665443221 1110                        01122356788999988876      899999


Q ss_pred             EEEee-CCCeEEEEEEEeec
Q 010856          479 FVFVL-EPGVEVICFVFEIL  497 (499)
Q Consensus       479 ~l~~~-~~~~~~~~f~~~~~  497 (499)
                      ||++. ++.++++|||++..
T Consensus       286 ILl~~~~~~~KL~DFGlA~~  305 (566)
T PLN03225        286 IIFSEGSGSFKIIDLGAAAD  305 (566)
T ss_pred             EEEeCCCCcEEEEeCCCccc
Confidence            99986 46899999999864

>PLN03150 hypothetical protein; Provisional

Probab=99.21  E-value=4.3e-11  Score=125.41  Aligned_cols=113  Identities=38%  Similarity=0.547  Sum_probs=103.6

Q ss_pred             CCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCC
Q 010856          151 DILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLS  230 (499)
Q Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  230 (499)
                      .++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCccCcccccCC-CCCCEEEccCCcCcccCC
Q 010856          231 NNNLSGAIPASLEKL-SYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       231 ~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~  263 (499)
                      +|++++..|..+... .++..+++.+|+..+..|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999888764 567889999998765443

>smart00090 RIO RIO-like kinase

Probab=99.19  E-value=3.2e-11  Score=110.77  Aligned_cols=132  Identities=11%  Similarity=-0.014  Sum_probs=88.7

Q ss_pred             hhcccccccccCCcceEEEEE--eCCCCEEEEEEeeccCCc------------------------cHHHHHHHHHHHhcC
Q 010856          361 DEFSENNLIGKGGFGSVYKAR--LGDRMEVAVKVFNLQCGR------------------------AFESFDVECEMMKNI  414 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~--~~~~~~vavK~~~~~~~~------------------------~~~~~~~E~~il~~l  414 (499)
                      ..|.+.+.||+|+||.||+|.  ..+|+.||+|+++.....                        ....+.+|++++.++
T Consensus        28 ~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L  107 (237)
T smart00090       28 ILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRL  107 (237)
T ss_pred             chHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357788999999999999998  468999999999754210                        012356899999999


Q ss_pred             CCCCccccceeEEccccceeeeeecccCCCcccccc-cccc----ccccccccccccceeec-------cCCCcccEEEe
Q 010856          415 RHRNLIKILHGVAVITFTVCLCLFHHSSASASASLV-SSLT----LSRPAKGGGFRGCVLWH-------VGVDFAAFVFV  482 (499)
Q Consensus       415 ~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~----~~~~~~~~i~~gl~yLH-------~~~~p~~~l~~  482 (499)
                      .+.. +.+..++...   ..+.++|+++|....... ....    ....++.|++.+++|||       .+++|.||+++
T Consensus       108 ~~~~-i~~p~~~~~~---~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~  183 (237)
T smart00090      108 YEAG-VPVPKPIAWR---RNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH  183 (237)
T ss_pred             HhcC-CCCCeeeEec---CceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE
Confidence            7643 3222222211   224677888775433221 1111    12345577888776555       57899999998


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                       ++.++++|||.+..
T Consensus       184 -~~~i~LiDFg~a~~  197 (237)
T smart00090      184 -DGKVVIIDVSQSVE  197 (237)
T ss_pred             -CCCEEEEEChhhhc
Confidence             88999999998763

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.16  E-value=2.8e-11  Score=108.82  Aligned_cols=124  Identities=10%  Similarity=-0.014  Sum_probs=85.6

Q ss_pred             ccccCCcceEEEEEeCCCCEEEEEEeeccC--Cc------cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          368 LIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GR------AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~------~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .||+|+||.||+|.. +|..+++|......  ..      ..+++.+|++++..++|+++.....++...+  ...++++
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv~e   77 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPD--NKTIVME   77 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCEEEEE
Confidence            379999999999985 67789999865432  11      1356789999999999887655444444322  2345778


Q ss_pred             ccCCCccccccccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.|.....+......  .++.+++.+|+++|+      +.+|.|+++. ++.++++|||.+..
T Consensus        78 ~~~g~~l~~~~~~~~~--~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        78 YIEGKPLKDVIEEGND--ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EECCccHHHHHhhcHH--HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            8766644332211111  455666777766655      8999999998 89999999998764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.15  E-value=4.2e-11  Score=108.78  Aligned_cols=127  Identities=13%  Similarity=0.023  Sum_probs=90.1

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCCc--------cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR--------AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.||+|++|.||+|.. .|..+++|+.......        ....+.+|++++..+.|++|.....++...+  ..++++
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--~~~lv~   78 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPE--NFIIVM   78 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCC--CCEEEE
Confidence            5789999999999987 6778999986543211        1245789999999999999887766655432  345577


Q ss_pred             cccCCCcccccccc-ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSS-LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.|.....+... ......++.+++.+++++|+      +.+|.|+++. ++.++++|||.+..
T Consensus        79 e~~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         79 EYIEGEPLKDLINSNGMEELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEeCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            88766544433211 11223445677777776665      8899999998 88999999998753

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.13  E-value=6.9e-11  Score=103.96  Aligned_cols=125  Identities=13%  Similarity=-0.007  Sum_probs=83.2

Q ss_pred             ccccccccCCcceEEEEEeCCCCEEEEEEeeccCC--c--cHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeeee
Q 010856          364 SENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG--R--AFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~--~--~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .....+++|+||+||.+.. .+..++.+.+.....  .  ....+.+|+++|+++. |++|++++++.      ....++
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~------~~~lvm   77 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWD------GRHLDR   77 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEc------CEEEEE
Confidence            3457899999999997765 667777777754431  1  1235789999999995 57898888751      123456


Q ss_pred             cccCCCccccccccccccccccccccccceeec------cCC-CcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSSLTLSRPAKGGGFRGCVLWH------VGV-DFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~yLH------~~~-~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|+.|..+.......  ......|++++++|+|      +|+ ||.||+++.++.+++||||++..
T Consensus        78 eyI~G~~L~~~~~~~--~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~  141 (218)
T PRK12274         78 SYLAGAAMYQRPPRG--DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVR  141 (218)
T ss_pred             eeecCccHHhhhhhh--hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCcee
Confidence            666555433211111  1123345556666555      588 78899998888899999999863

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.13  E-value=3.7e-11  Score=111.30  Aligned_cols=118  Identities=7%  Similarity=-0.019  Sum_probs=87.2

Q ss_pred             CCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC-ccccc
Q 010856          372 GGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS-ASASL  449 (499)
Q Consensus       372 G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~-~~~~l  449 (499)
                      |.||.||+++. .+++.||+|++....     .+.+|...+....||||+++++++...+  ...+++|++.|+ +.+.+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~lv~e~~~~~~L~~~l   76 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSED--SVFLVLQHAEGGKLWSHI   76 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCC--eEEEEEecCCCCCHHHHH
Confidence            89999999995 578999999997543     2345555666667999999999887643  445577777654 33333


Q ss_pred             cc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          450 VS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       450 ~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ..    .+.....++.|+++||+|||+      +++|.|++++.++.++++|||+..
T Consensus        77 ~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~  133 (237)
T cd05576          77 SKFLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWS  133 (237)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchh
Confidence            22    222234456788999998876      899999999999999999999754

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.13  E-value=9.7e-11  Score=105.71  Aligned_cols=127  Identities=20%  Similarity=0.224  Sum_probs=96.7

Q ss_pred             cccCCcceEEEEEeC-CCCEEEEEEeeccCCc-cHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCCcc
Q 010856          369 IGKGGFGSVYKARLG-DRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASAS  446 (499)
Q Consensus       369 lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~  446 (499)
                      ||+|++|.||+++.. +++.+++|++...... ..+.+.+|++.++.++|++|+++++++...  ...++++++..|...
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~~~~e~~~~~~l   78 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDE--NHLYLVMEYCEGGSL   78 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecC--CeEEEEEecCCCCcH
Confidence            689999999999974 4899999999765432 346799999999999999999999888763  344567788874433


Q ss_pred             c-cccc-----cccccccccccccccceeecc------CCCcccEEEee-CCCeEEEEEEEeec
Q 010856          447 A-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-EPGVEVICFVFEIL  497 (499)
Q Consensus       447 ~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-~~~~~~~~f~~~~~  497 (499)
                      . .+..     .......++.+++++++|||+      +++|.|++++. ++.++++|||....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~  142 (215)
T cd00180          79 KDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKL  142 (215)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEE
Confidence            3 2221     112233445788888887766      78999999998 89999999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.12  E-value=1.3e-11  Score=115.41  Aligned_cols=134  Identities=14%  Similarity=0.156  Sum_probs=104.9

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..+|....+||+|+||+|.+|+.+ +.+.||||++++.-   ..+.+--+.|.++++-. +-|.+++++.++..++..  
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRL--  425 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRL--  425 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhhe--
Confidence            356888999999999999999964 57899999998764   23345567899999877 678999999888877643  


Q ss_pred             eeeeccc-CCCccccccccccccccc----cccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          435 LCLFHHS-SASASASLVSSLTLSRPA----KGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       435 ~~l~~~~-~~~~~~~l~~~~~~~~~~----~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      +.++||+ +|++...+++.+...+..    |..||-||-|||+      +.|-.|++++.++-+++.|||..
T Consensus       426 yFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmc  497 (683)
T KOG0696|consen  426 YFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMC  497 (683)
T ss_pred             eeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccc
Confidence            3355555 555555555555554444    4789999999998      68889999999999999999974

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.12  E-value=1.4e-11  Score=121.65  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=101.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +..|.....+|.|+|+.|..+.. .+++.+|+|++.+..    .+-.+|+.++... +||||+++.+.+.+  ....+.+
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~--~~~~~~v  394 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYED--GKEIYLV  394 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecC--Cceeeee
Confidence            56678888899999999999995 578999999997652    2344678776665 79999999999876  5566778


Q ss_pred             ecccCCC-cccccccccc---ccccccccccccceeecc------CCCcccEEEe-eCCCeEEEEEEEeecc
Q 010856          438 FHHSSAS-ASASLVSSLT---LSRPAKGGGFRGCVLWHV------GVDFAAFVFV-LEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~~~~---~~~~~~~~i~~gl~yLH~------~~~p~~~l~~-~~~~~~~~~f~~~~~~  498 (499)
                      ++.+.|+ +.+.+.....   ....++++++.|+.|||+      |.+|.|||++ +++.++++||||..-+
T Consensus       395 ~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~  466 (612)
T KOG0603|consen  395 MELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSEL  466 (612)
T ss_pred             ehhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhC
Confidence            8887655 3443332221   223367899999999987      8999999995 6777999999998754

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.10  E-value=2.4e-11  Score=107.65  Aligned_cols=135  Identities=11%  Similarity=0.112  Sum_probs=97.1

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .+.|++.+.+|+|.||.+.+++++ +.+.+++|.+..... ..++|.+|..---.+ .|.||+.-|++.++... .++.+
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d-~YvF~  100 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSD-AYVFV  100 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHHhhcCc-eEEEe
Confidence            356888899999999999999964 688999999875442 347899998765455 69999998876444222 22334


Q ss_pred             eccc-CCCccccccc---cccccccccccccccceeecc------CCCcccEEEee--CCCeEEEEEEEee
Q 010856          438 FHHS-SASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL--EPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~-~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~--~~~~~~~~f~~~~  496 (499)
                      .|+. .|++...+..   .+...+.++.|++.|++|+|+      ++|.+|||+=+  ...||+||||..+
T Consensus       101 qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~  171 (378)
T KOG1345|consen  101 QEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTR  171 (378)
T ss_pred             eccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeeccccc
Confidence            4444 4554443322   233455667899999999987      89999998843  4599999999865

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.08  E-value=1.1e-10  Score=108.09  Aligned_cols=124  Identities=18%  Similarity=0.133  Sum_probs=94.1

Q ss_pred             CcceEEEEEeC-CCCEEEEEEeeccCCcc-HHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCC-ccccc
Q 010856          373 GFGSVYKARLG-DRMEVAVKVFNLQCGRA-FESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSAS-ASASL  449 (499)
Q Consensus       373 ~~g~v~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~-~~~~l  449 (499)
                      +||.||+|... +++.+|+|++....... .+.+.+|++.+++++|+||+++++++...  ...+.++++..++ +...+
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~l~~e~~~~~~L~~~~   78 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDE--DKLYLVMEYCDGGDLFDLL   78 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeC--CEEEEEEeCCCCCCHHHHH
Confidence            58999999975 58999999997665433 67899999999999999999999988763  3445567777664 33222


Q ss_pred             cc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          450 VS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       450 ~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ..    .......++.++++|++|||+      +++|.|+++++++.++++|||+...+
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~  137 (244)
T smart00220       79 KKRGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQL  137 (244)
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeee
Confidence            21    112233445778888887766      79999999999999999999998754

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=2.1e-10  Score=81.17  Aligned_cols=60  Identities=32%  Similarity=0.456  Sum_probs=35.7

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccc
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKL   91 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   91 (499)
                      +|++|++++|+++.+.+++|.++++|++|++++|.++.+.+..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666655555566666666666666666655555566666666666665543

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.03  E-value=1.4e-10  Score=124.18  Aligned_cols=199  Identities=21%  Similarity=0.262  Sum_probs=119.0

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCC--CcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCN--ISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      ..+...+-+|.+..+...   ...+ +|++|-+..|.  +..+..+.|..++.|+.|||++|.--+.+|..++++-+|++
T Consensus       524 ~~rr~s~~~~~~~~~~~~---~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGS---SENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             heeEEEEeccchhhccCC---CCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            445666666666533221   1233 68888888875  55455555777888888888887766677888888888888


Q ss_pred             EecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCC---CccccCCCCCcEEEcCCC
Q 010856           84 LGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV---PLTFWNLKDILNLNFSSN  160 (499)
Q Consensus        84 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~l~~L~~L~l~~n  160 (499)
                      |+|++..+. .+|..+.+++.|.+|++..+.-...++.....+.+|++|.+..-....-   -..+..+.+|+.+.....
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            888888887 6777888888888888887776656666667788888888866552221   122334444444444322


Q ss_pred             cCCCCCcccccCCCCcc----EEEccCCcccccCcccccCCcCCceeeCcCCcCCC
Q 010856          161 FLTSPLPLEIGNLKVLI----GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG  212 (499)
Q Consensus       161 ~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  212 (499)
                      ..  .....+..+..|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.+
T Consensus       679 s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  679 SV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            21  0111122222222    2222222221 233445566667777776666653

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.03  E-value=3.5e-11  Score=111.66  Aligned_cols=134  Identities=18%  Similarity=0.179  Sum_probs=94.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCC------CccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR------NLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~------niv~l~~~~~~~~~~  432 (499)
                      +..|.+...+|+|.||+|..+.. +++..||+|+++.-. ...+...-|++++.++.+.      -+|.+.+|+.- .. 
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~-kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy-rg-  164 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD-KYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDY-RG-  164 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH-HHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc-cC-
Confidence            56799999999999999999995 458999999996443 3456677899999998322      24555444321 11 


Q ss_pred             eeeeeecccCCCcccccc------ccccccccccccccccceeecc------CCCcccEEEeeC----------------
Q 010856          433 VCLCLFHHSSASASASLV------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE----------------  484 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~----------------  484 (499)
                      ..-+++|.++-+.++++.      .+....+.++.|++++++|||+      |.||+||++++.                
T Consensus       165 hiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r  244 (415)
T KOG0671|consen  165 HICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIR  244 (415)
T ss_pred             ceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceec
Confidence            222356666655555443      3444567778999999999987      899999988643                


Q ss_pred             ----CCeEEEEEEEee
Q 010856          485 ----PGVEVICFVFEI  496 (499)
Q Consensus       485 ----~~~~~~~f~~~~  496 (499)
                          ..+++||||=++
T Consensus       245 ~~ks~~I~vIDFGsAt  260 (415)
T KOG0671|consen  245 PLKSTAIKVIDFGSAT  260 (415)
T ss_pred             cCCCcceEEEecCCcc
Confidence                246889998654

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.03  E-value=3.6e-10  Score=100.54  Aligned_cols=125  Identities=14%  Similarity=0.056  Sum_probs=76.9

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCc--cHHH----------------------HHHHHHHHhcCCCCC--c
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR--AFES----------------------FDVECEMMKNIRHRN--L  419 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~--~~~~----------------------~~~E~~il~~l~H~n--i  419 (499)
                      .+.||+|+||.||+|...+++.||||++......  ....                      ...|.+.+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            4679999999999999878999999998754311  1111                      124555555554332  2


Q ss_pred             cccceeEEccccceeeeeecccCCCc-----cccccccccccccccccccccceee-------ccCCCcccEEEeeCCCe
Q 010856          420 IKILHGVAVITFTVCLCLFHHSSASA-----SASLVSSLTLSRPAKGGGFRGCVLW-------HVGVDFAAFVFVLEPGV  487 (499)
Q Consensus       420 v~l~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~~~~~~~~~~i~~gl~yL-------H~~~~p~~~l~~~~~~~  487 (499)
                      .+.+++      ....++++++.|+.     ....... ...+.++.+++.++.++       |.+++|.|++++ ++.+
T Consensus        82 ~~~~~~------~~~~lv~e~~~g~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~  153 (187)
T cd05119          82 PKPIDL------NRHVLVMEFIGGDGIPAPRLKDVRLL-EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKV  153 (187)
T ss_pred             CceEec------CCCEEEEEEeCCCCccChhhhhhhhc-ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcE
Confidence            222221      12345777777632     1111111 22333445566555554       558999999998 8899


Q ss_pred             EEEEEEEeecc
Q 010856          488 EVICFVFEILL  498 (499)
Q Consensus       488 ~~~~f~~~~~~  498 (499)
                      +++|||.++..
T Consensus       154 ~liDfg~a~~~  164 (187)
T cd05119         154 YIIDVPQAVEI  164 (187)
T ss_pred             EEEECcccccc
Confidence            99999998753

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.7e-10  Score=80.67  Aligned_cols=61  Identities=36%  Similarity=0.501  Sum_probs=38.5

Q ss_pred             CCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCC
Q 010856           55 TNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKL  115 (499)
Q Consensus        55 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (499)
                      |+|++|++++|+++.+.+..|.++++|++|++++|.++.+.++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566666666666655556666666666666666666655556666666666666666653

...

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.01  E-value=1.3e-10  Score=117.97  Aligned_cols=130  Identities=18%  Similarity=0.178  Sum_probs=87.0

Q ss_pred             cccccccccCCcc-eEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeecc
Q 010856          363 FSENNLIGKGGFG-SVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       363 ~~~~~~lg~G~~g-~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      |...+++|.|+-| .||+|.+ .|+.||||++-..   ..+-..+||..++.- +|||||+++  |.+.+....++..|.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyy--c~E~d~qF~YIalEL  584 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYY--CSEQDRQFLYIALEL  584 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEE--eeccCCceEEEEehH
Confidence            3445678899887 4689998 6789999988542   234467999998877 699999975  444333333444444


Q ss_pred             cCCCcccccccc--c------cccccccccccccceeecc------CCCcccEEEeeC-----CCeEEEEEEEeecc
Q 010856          441 SSASASASLVSS--L------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-----PGVEVICFVFEILL  498 (499)
Q Consensus       441 ~~~~~~~~l~~~--~------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-----~~~~~~~f~~~~~~  498 (499)
                      +...+.+.+...  .      -.......|++.|+++||+      +.||+|||++..     -.++++|||+..-|
T Consensus       585 C~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl  661 (903)
T KOG1027|consen  585 CACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKL  661 (903)
T ss_pred             hhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEeccccccccc
Confidence            444443333221  1      1112223678888887765      899999999763     47999999998644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.97  E-value=3.5e-12  Score=126.96  Aligned_cols=128  Identities=30%  Similarity=0.373  Sum_probs=77.6

Q ss_pred             CCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCC
Q 010856          151 DILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLS  230 (499)
Q Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  230 (499)
                      .|...+.++|.+.. ....+.-++.|+.|+|++|+++..  ..+..++.|++|||++|.+..+.--...++ .|..|.++
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence            45566666666652 334555566677777777777654  356677777777777777763322222333 37777777


Q ss_pred             CCcCCccCcccccCCCCCCEEEccCCcCccc--CCCCCCCCCccccccCCCcCCCC
Q 010856          231 NNNLSGAIPASLEKLSYLENLNLSFNKLEGE--IPRGGSFGNFSAESFEGNELLCG  284 (499)
Q Consensus       231 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~~l~~~~l~~N~~~c~  284 (499)
                      +|.++..  ..+.++.+|+.||+++|-|.+-  +...+.+..+..+++.|||.-|.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            7777633  2455677777777777777642  22223445566777777776554

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.94  E-value=9.8e-10  Score=93.80  Aligned_cols=125  Identities=11%  Similarity=-0.013  Sum_probs=88.8

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCC--CCccccceeEEccccceeeeeecccCC
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH--RNLIKILHGVAVITFTVCLCLFHHSSA  443 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H--~niv~l~~~~~~~~~~~~~~l~~~~~~  443 (499)
                      .+.+|+|.++.||++...+ ..+++|.......  ...+.+|+.++..++|  ..+++++++....  ...+.+++++.|
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~--~~~~~v~e~~~g   77 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESD--GWSYLLMEWIEG   77 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CccEEEEEecCC
Confidence            4679999999999999744 6899998865433  4678999999999977  4888877665442  245567788877


Q ss_pred             Cccccccccccccccccccccccce---------eeccCCCcccEEEeeCCCeEEEEEEEeec
Q 010856          444 SASASLVSSLTLSRPAKGGGFRGCV---------LWHVGVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       444 ~~~~~l~~~~~~~~~~~~~i~~gl~---------yLH~~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .....+  ........+.+++++++         .+|.+.+|.|+++...+.++++|||.+..
T Consensus        78 ~~~~~~--~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          78 ETLDEV--SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             eecccC--CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            654432  11112222333444333         56778999999999889999999998764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.94  E-value=1e-09  Score=101.07  Aligned_cols=130  Identities=12%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             cccc-cCCcceEEEEEeCCCCEEEEEEeeccC-------------CccHHHHHHHHHHHhcCCCCCc--cccceeEEccc
Q 010856          367 NLIG-KGGFGSVYKARLGDRMEVAVKVFNLQC-------------GRAFESFDVECEMMKNIRHRNL--IKILHGVAVIT  430 (499)
Q Consensus       367 ~~lg-~G~~g~v~~~~~~~~~~vavK~~~~~~-------------~~~~~~~~~E~~il~~l~H~ni--v~l~~~~~~~~  430 (499)
                      ..+| .|+.|+||.+... +..+++|.+....             ......+.+|++++.+++|++|  ++.+++.....
T Consensus        37 ~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            5687 8999999999874 6789999885321             1123567899999999999885  56666543321


Q ss_pred             cc--eeeeeecccCC-Cccccccccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FT--VCLCLFHHSSA-SASASLVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~--~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..  ...++++++.| .....+............|+++++.+||+      |++|.||+++.++.+++||||.+..
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            11  11256677765 33322222222233335677888887766      8999999998888999999998754

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=2.6e-10  Score=103.90  Aligned_cols=134  Identities=11%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~  433 (499)
                      ...+|.+.++||+|+|++|..+++ ++.+.||+|++++.-   .++.+.+..|..+..+. +||.+|.++.+|.. |...
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqt-esrl  326 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQT-ESRL  326 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcc-cceE
Confidence            346788999999999999999995 578999999998753   34556677888887765 79999999876654 4444


Q ss_pred             eeeeeccc-CCCcccccccccccccccc----ccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          434 CLCLFHHS-SASASASLVSSLTLSRPAK----GGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       434 ~~~l~~~~-~~~~~~~l~~~~~~~~~~~----~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      ++ +.||. +|++....+......+..|    ..|+-||.|||+      +.|-.|+|++.++-.|+.|+|.
T Consensus       327 ff-vieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygm  397 (593)
T KOG0695|consen  327 FF-VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGM  397 (593)
T ss_pred             EE-EEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccch
Confidence            44 44444 4444333333333333333    678899999998      6888999999999999999986

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.91  E-value=1.1e-09  Score=106.24  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=93.5

Q ss_pred             hcccccccccCCcceEEEEEeCC--CCEEEEEEeeccCCccHHHHHHHHHHHhcCCC----CCccccceeEEccccceee
Q 010856          362 EFSENNLIGKGGFGSVYKARLGD--RMEVAVKVFNLQCGRAFESFDVECEMMKNIRH----RNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~~--~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H----~niv~l~~~~~~~~~~~~~  435 (499)
                      .|.+.+.||+|+||.||.|....  ...+|+|.-..........+..|..++..+..    +++.++++.... .....+
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~-~~~~~~   97 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRS-TEDFNF   97 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccC-CCceeE
Confidence            79999999999999999999643  35789988866543333368889999888863    577777766632 122345


Q ss_pred             eeecccCCCcccccccc------ccccccccccccccc------eeeccCCCcccEEEeeC-----CCeEEEEEEEee
Q 010856          436 CLFHHSSASASASLVSS------LTLSRPAKGGGFRGC------VLWHVGVDFAAFVFVLE-----PGVEVICFVFEI  496 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl------~yLH~~~~p~~~l~~~~-----~~~~~~~f~~~~  496 (499)
                      +++...+.++.+.....      ....-.++.|++.+|      .|+|+|+||.|+.+...     ..+.++|||+++
T Consensus        98 iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   98 IVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            56777776654432111      112233356777777      57777999999999765     359999999987

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.90  E-value=1.3e-10  Score=105.45  Aligned_cols=135  Identities=16%  Similarity=0.094  Sum_probs=101.9

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEc----ccccee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAV----ITFTVC  434 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~----~~~~~~  434 (499)
                      .|...+.+|.|.= .|..+.. -.++.||+|++...-  ....++..+|..++..+.|+||++++.++.-    .++...
T Consensus        18 Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~   96 (369)
T KOG0665|consen   18 RYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEV   96 (369)
T ss_pred             eeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhH
Confidence            4566677888876 5555553 358899999885432  2335678899999999999999999998853    244567


Q ss_pred             eeeecccCCCccccccc--cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVS--SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~--~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.++|+|...+...++.  +......+..|++.|+.|||+      +.||.|+++..+..+||.|||.++-
T Consensus        97 y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~  167 (369)
T KOG0665|consen   97 YLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLART  167 (369)
T ss_pred             HHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcc
Confidence            78899998887665542  222344456888888888876      7999999999999999999999863

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.90  E-value=8.1e-10  Score=118.47  Aligned_cols=264  Identities=22%  Similarity=0.193  Sum_probs=166.0

Q ss_pred             CCCCCCEEECcCCC--CCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCC
Q 010856            3 NCKSLTLIYLSNNP--LDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQK   80 (499)
Q Consensus         3 ~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   80 (499)
                      ++++|++|-+..|.  +..+... +|..+| .|+.|||++|.--+.+|..++++-+|++|++++..++ .+|..+.++..
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~-ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~  619 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGE-FFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK  619 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHH-HHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence            46789999999997  5544443 788888 8999999998777789999999999999999999998 78889999999


Q ss_pred             CCeEecccccccccCCccccCcccccEEeeecCCCC--CcCCccccCCccCCeeeccccCCCCCCccccCCCCCc----E
Q 010856           81 LQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS--GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDIL----N  154 (499)
Q Consensus        81 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~----~  154 (499)
                      |.+|++..+.-....+.....+.+|++|.+..-...  ...-..+..+.+|+.+....... .+-..+..++.|.    .
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQS  698 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHh
Confidence            999999998866566777788999999999776522  11222334455555555543333 1111122222222    2


Q ss_pred             EEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccC------CcCCceeeCcCCcCCCCCCccccCCCCCCEEe
Q 010856          155 LNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGG------LKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN  228 (499)
Q Consensus       155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  228 (499)
                      +.+.++... ..+..+..+.+|+.|.+.++.+......+...      ++++..+...++..- ..+.+..-.++|+.|+
T Consensus       699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~  776 (889)
T KOG4658|consen  699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLS  776 (889)
T ss_pred             hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEE
Confidence            222222222 23455667778888888877775432222211      223333333333222 2223334457788888


Q ss_pred             CCCCcCCccCcccccCCCCCCEEEccCCcCccc--CCCCCCCCCcc
Q 010856          229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEGE--IPRGGSFGNFS  272 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~~l~  272 (499)
                      +..+.....+......+..+..+-+..+.+.+.  +...+.++++.
T Consensus       777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~  822 (889)
T KOG4658|consen  777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY  822 (889)
T ss_pred             EecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE
Confidence            887776655555555666666666666666554  33333444433

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.89  E-value=9.9e-10  Score=95.95  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=90.9

Q ss_pred             hhhcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCC-CCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH-RNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H-~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|...+.||+|+||.+|.|. ..+|+.||+|+=....  ...+...|.++...++| ..|..+..+..+.+  ...++
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a--~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~--ynvlV   89 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA--KHPQLLYESKVYRILQGGVGIPHIRHYGTEKD--YNVLV   89 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccC--CCcchhHHHHHHHHhccCCCCchhhhhccccc--cceee
Confidence            4679999999999999999999 5789999999764432  22457789999888876 45555555544433  33557


Q ss_pred             ecccCCCccccccccc-----cccccccccccccce------eeccCCCcccEEEee---CCCeEEEEEEEee
Q 010856          438 FHHSSASASASLVSSL-----TLSRPAKGGGFRGCV------LWHVGVDFAAFVFVL---EPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~~~~~~l~~~~-----~~~~~~~~~i~~gl~------yLH~~~~p~~~l~~~---~~~~~~~~f~~~~  496 (499)
                      ++.++-++.+.+..-.     ....-.|-|++.-++      |+|+++||.|||+--   -..+-+||||++.
T Consensus        90 MdLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaK  162 (341)
T KOG1163|consen   90 MDLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAK  162 (341)
T ss_pred             eeccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchh
Confidence            8888766544332111     111111345555555      556799999999942   3688899999974

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.87  E-value=6.8e-10  Score=104.58  Aligned_cols=136  Identities=20%  Similarity=0.164  Sum_probs=95.4

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEe-C---CCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccc
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARL-G---DRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVIT  430 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~-~---~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~  430 (499)
                      +......|...++||+|.|+.||++.. .   ..+.||+|.+....  ....+.+|++++..+ -|.||+++.+++...+
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            344556688999999999999999984 3   46789999997654  345689999999998 5999999998776543


Q ss_pred             cceeeeeecccCCCcccccccccc--ccccccccccccce------eeccCCCcccEEEeeC-CCeEEEEEEEe
Q 010856          431 FTVCLCLFHHSSASASASLVSSLT--LSRPAKGGGFRGCV------LWHVGVDFAAFVFVLE-PGVEVICFVFE  495 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~i~~gl~------yLH~~~~p~~~l~~~~-~~~~~~~f~~~  495 (499)
                        ....+++|+...-+..+.....  ..+...+.+..||+      ++|+|+||.||+++.. +.-.++|||++
T Consensus       109 --~v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA  180 (418)
T KOG1167|consen  109 --QVAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLA  180 (418)
T ss_pred             --eeEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhH
Confidence              3344566665443333322211  12222233344444      5677999999999864 67889999986

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.83  E-value=2.2e-09  Score=98.10  Aligned_cols=131  Identities=13%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             hcccccccccCCcceEEEEE-eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeec
Q 010856          362 EFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .|...++||+|+||+.+.|+ +-+++.||||.=....  ..-++..|-+..+.+ ..+.|...|  |+..+.....++++
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vY--YFGqeG~~NiLVid  104 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVY--YFGQEGKYNILVID  104 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCcee--eeccccchhhhhhh
Confidence            58889999999999999999 5589999999654332  223455666666655 467888765  44556677777888


Q ss_pred             ccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEee-----CCCeEEEEEEEee
Q 010856          440 HSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-----EPGVEVICFVFEI  496 (499)
Q Consensus       440 ~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-----~~~~~~~~f~~~~  496 (499)
                      .++-++.+....     ....+.-+|.|+..-++|+|+      ++||.|||+-.     ..-+-+||||++.
T Consensus       105 LLGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK  177 (449)
T KOG1165|consen  105 LLGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAK  177 (449)
T ss_pred             hhCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchh
Confidence            887665443321     122234446899999999998      89999999943     2456789999874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.76  E-value=6.2e-11  Score=118.29  Aligned_cols=126  Identities=28%  Similarity=0.292  Sum_probs=60.9

Q ss_pred             ccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCC
Q 010856          105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN  184 (499)
Q Consensus       105 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  184 (499)
                      |.+.+.++|.+. ....++.-++.|+.|+|++|+++++. .+..+++|++|||++|.++.+....-..+. |+.|.+++|
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            444455555554 33344444455555555555555544 444555555555555555532222222222 555555555


Q ss_pred             cccccCcccccCCcCCceeeCcCCcCCCC-CCccccCCCCCCEEeCCCCcCC
Q 010856          185 NFSGVIPTEIGGLKNLEYLFLGYNRLQGS-IPDSFGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       185 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~N~l~  235 (499)
                      .++..  ..+.++.+|+.||+++|-|.+- ....++.+..|+.|+|.+|++-
T Consensus       243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            55433  3344555555555555555431 1122334445555555555553

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.71  E-value=3.9e-08  Score=99.92  Aligned_cols=135  Identities=15%  Similarity=0.100  Sum_probs=84.7

Q ss_pred             hhcccccccccCCcceEEEEEeCC-CCEEEEEEeeccCCc--------------------------c--------HH---
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD-RMEVAVKVFNLQCGR--------------------------A--------FE---  402 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~-~~~vavK~~~~~~~~--------------------------~--------~~---  402 (499)
                      .+|+. +.+|+|++|+||+|++++ |+.||||++++....                          +        .+   
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34665 789999999999999876 999999999754210                          0        11   


Q ss_pred             ---HHHHHHHHHhcC----CCCCccccceeEEccccceeeeeecccCCCccccc---cccccccccc--------ccccc
Q 010856          403 ---SFDVECEMMKNI----RHRNLIKILHGVAVITFTVCLCLFHHSSASASASL---VSSLTLSRPA--------KGGGF  464 (499)
Q Consensus       403 ---~~~~E~~il~~l----~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~~~~~~~~~--------~~~i~  464 (499)
                         ++.+|++.+.++    .+...+.+-.+|.+.. ...++++|++.|.....+   ...+.....+        ..|+.
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~s-t~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif  277 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYC-SETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF  277 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccC-CCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence               134455444433    2444444444554432 234567888877654332   1111111111        24444


Q ss_pred             ccceeeccCCCcccEEEeeCC----CeEEEEEEEeecc
Q 010856          465 RGCVLWHVGVDFAAFVFVLEP----GVEVICFVFEILL  498 (499)
Q Consensus       465 ~gl~yLH~~~~p~~~l~~~~~----~~~~~~f~~~~~~  498 (499)
                      + -.+.|.|.+|.|+++..++    .++++|||+...+
T Consensus       278 ~-~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        278 R-DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             h-CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEEC
Confidence            3 5689999999999998777    8999999997654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=6.4e-09  Score=93.73  Aligned_cols=221  Identities=20%  Similarity=0.176  Sum_probs=135.8

Q ss_pred             ccEEEcccCCCcccCC-ccc-cCCCCCCEEeccCCcCCc--cCCccccCCCCCCeEecccccccccCCccccCcccccEE
Q 010856           33 LEDFRMYNCNISGGIP-EEI-SNLTNSTIVNLGGNKLNG--SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL  108 (499)
Q Consensus        33 L~~L~l~~n~i~~~~~-~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  108 (499)
                      ++-|.+.++.|..+.. +.| ...+.+++|||.+|.|+.  .+...+.++|.|+.|+|+.|++...+-..-..+.+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            4466667776653321 122 235678888888888874  223345788888999999888875443222466788888


Q ss_pred             eeecCCCCCcC-CccccCCccCCeeeccccCCCCC--C-ccccCC-CCCcEEEcCCCcCCC--CCcccccCCCCccEEEc
Q 010856          109 DLDGNKLSGSL-PACFSNLTSLRIVSLGSNKLTSV--P-LTFWNL-KDILNLNFSSNFLTS--PLPLEIGNLKVLIGIDF  181 (499)
Q Consensus       109 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~~l-~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l  181 (499)
                      -|.+..+.-.. ...+..+|.++.|.++.|++..+  . ...... +.+++|+...|....  ..-..-...+++..+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            88888776322 23456778888888888865542  1 112221 245555555442210  00001122456677777


Q ss_pred             cCCcccccC-cccccCCcCCceeeCcCCcCCCC-CCccccCCCCCCEEeCCCCcCCccCc------ccccCCCCCCEEEc
Q 010856          182 SMNNFSGVI-PTEIGGLKNLEYLFLGYNRLQGS-IPDSFGDLISLKFLNLSNNNLSGAIP------ASLEKLSYLENLNL  253 (499)
Q Consensus       182 ~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l  253 (499)
                      ..|.+.... ...+..++.+.-|+|+.|+|.+. ..+.+.+++.|..|.+++|++.+...      -.++.+++++.|+=
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            778765432 24456677778899999988753 23568888999999999998864332      12456677777653

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.60  E-value=4.9e-08  Score=97.91  Aligned_cols=131  Identities=12%  Similarity=0.043  Sum_probs=81.5

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCCccH----------------------------------------HHHHH
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAF----------------------------------------ESFDV  406 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~----------------------------------------~~~~~  406 (499)
                      +.+|+|++|+||+|++++|+.||||+.++......                                        -+|.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            67999999999999999999999999865421000                                        02445


Q ss_pred             HHHHHhcC----CCCCccccceeEEccccceeeeeecccCCCccccccccc--c-cccccccc-------ccccceeecc
Q 010856          407 ECEMMKNI----RHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSL--T-LSRPAKGG-------GFRGCVLWHV  472 (499)
Q Consensus       407 E~~il~~l----~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~--~-~~~~~~~~-------i~~gl~yLH~  472 (499)
                      |++.+.++    .|.+-+.+-.+|..... ..++++||+.|..........  . ....++.+       -+..-.++|.
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~-~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~  281 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTS-ERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHA  281 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcC-CceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            55554443    23333443444433222 245678888776544332110  0 11112211       1223457899


Q ss_pred             CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          473 GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       473 ~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +.+|.|+++..++.++++|||+...+
T Consensus       282 D~hPgNilv~~~g~i~liDfG~~~~l  307 (437)
T TIGR01982       282 DLHPGNIFVLKDGKIIALDFGIVGRL  307 (437)
T ss_pred             CCCcccEEECCCCcEEEEeCCCeeEC
Confidence            99999999998999999999997654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=9.2e-09  Score=92.71  Aligned_cols=207  Identities=20%  Similarity=0.186  Sum_probs=124.1

Q ss_pred             CCCCCEEeccCCcCCccCC-ccc-cCCCCCCeEecccccccc--cCCccccCcccccEEeeecCCCCCcCCccccCCccC
Q 010856           54 LTNSTIVNLGGNKLNGSIP-ITL-SKLQKLQGLGLEDNKLEG--SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL  129 (499)
Q Consensus        54 l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  129 (499)
                      ...++.|.+.++.|..... ..| ...+.+++|||.+|.|+.  .+...+.++|.|+.|+|+.|++...+...-..+.+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            3345566666666653322 112 346788999999999873  222346788999999999999885443322456788


Q ss_pred             CeeeccccCCCC--CCccccCCCCCcEEEcCCCcCCCCC--cccccC-CCCccEEEccCCccccc--CcccccCCcCCce
Q 010856          130 RIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPL--PLEIGN-LKVLIGIDFSMNNFSGV--IPTEIGGLKNLEY  202 (499)
Q Consensus       130 ~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~-l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~  202 (499)
                      +.|-|.+..+.-  ....+..+|.+++|+++.|.+.-..  ...... -+.+.+|.+..|....-  .-..-.-+|++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            888888876653  5556677888888888888544211  111111 12445555544432200  0001123567777


Q ss_pred             eeCcCCcCCCCC-CccccCCCCCCEEeCCCCcCCccC-cccccCCCCCCEEEccCCcCcc
Q 010856          203 LFLGYNRLQGSI-PDSFGDLISLKFLNLSNNNLSGAI-PASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       203 L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~  260 (499)
                      +.+..|.+.... ...+..+|.+..|+|+.|+|.+.. -+.+.+++.|..|.+++|++..
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            777777665432 234556666777777777776322 2456667777777777777663

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.56  E-value=1.8e-08  Score=94.20  Aligned_cols=142  Identities=15%  Similarity=0.107  Sum_probs=96.9

Q ss_pred             HHHHHhhhcccccccccCCcceEEEEEeCC------CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEE
Q 010856          355 ELFRATDEFSENNLIGKGGFGSVYKARLGD------RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVA  427 (499)
Q Consensus       355 ~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~  427 (499)
                      ++......+.....+-+|.||.||+|.+++      .+.|-+|.++... .-+...+..|.-.+..+.|||+.++.+++.
T Consensus       278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~i  357 (563)
T KOG1024|consen  278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSI  357 (563)
T ss_pred             hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEe
Confidence            344444557777889999999999997643      2345567665543 345677899999999999999999999987


Q ss_pred             ccccceeeeeecccC-CCcccccccc----cccc--------ccccccccccceeecc------CCCcccEEEeeCCCeE
Q 010856          428 VITFTVCLCLFHHSS-ASASASLVSS----LTLS--------RPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVE  488 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~-~~~~~~l~~~----~~~~--------~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~  488 (499)
                      + ++..-++++.+++ |.+..++..-    ....        -.+|.|++.|++|||+      ++-.-|-+.++--+|+
T Consensus       358 e-~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVk  436 (563)
T KOG1024|consen  358 E-DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVK  436 (563)
T ss_pred             e-ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEE
Confidence            6 3444455777765 4444444311    1111        1225899999999998      3444666777777888


Q ss_pred             EEEEEEeec
Q 010856          489 VICFVFEIL  497 (499)
Q Consensus       489 ~~~f~~~~~  497 (499)
                      ++|=-++|-
T Consensus       437 ltDsaLSRD  445 (563)
T KOG1024|consen  437 LTDSALSRD  445 (563)
T ss_pred             eccchhccc
Confidence            888766653

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.54  E-value=8.5e-08  Score=93.03  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             cccccccccCCcceEEEEEeCCCCEEEEEEeeccCCc---cHHHHHHHHHHHhcCCCC-CccccceeEEccccceeeeee
Q 010856          363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR---AFESFDVECEMMKNIRHR-NLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~il~~l~H~-niv~l~~~~~~~~~~~~~~l~  438 (499)
                      |.....+|.|+||.||++...  ..+|+|.+......   ....+.+|+.+++.+.|+ +|+++.+++....  ....+.
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~   77 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEG--SLYLVM   77 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCC--EEEEEE
Confidence            566788999999999999975  78899999765422   367899999999999988 7999998884422  234455


Q ss_pred             cccCCCcccc-ccccc---c----ccccccccccccceeec------cCCCcccEEEeeCC-CeEEEEEEEeec
Q 010856          439 HHSSASASAS-LVSSL---T----LSRPAKGGGFRGCVLWH------VGVDFAAFVFVLEP-GVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~-l~~~~---~----~~~~~~~~i~~gl~yLH------~~~~p~~~l~~~~~-~~~~~~f~~~~~  497 (499)
                      +++.+..... .....   .    ....+..|++.|++|+|      +++||.|+++...+ .++++|||++..
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~  151 (384)
T COG0515          78 EYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKL  151 (384)
T ss_pred             ecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCccee
Confidence            6655443332 22111   1    12233477778777665      48999999999888 699999998764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1.2e-09  Score=98.27  Aligned_cols=173  Identities=21%  Similarity=0.199  Sum_probs=82.3

Q ss_pred             CCeEeccccccccc-CCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccC-CCC--CCccccCCCCCcEEE
Q 010856           81 LQGLGLEDNKLEGS-IPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNK-LTS--VPLTFWNLKDILNLN  156 (499)
Q Consensus        81 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~  156 (499)
                      |++|||++..|+.. .-..+..+.+|+.|.|.++++.+.+...++.-.+|+.|+++.+. +++  +.-.+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            55556655555421 11223445556666666666655555555555566666665542 332  222344556666666


Q ss_pred             cCCCcCCCCCccc-ccC-CCCccEEEccCCccc--c-cCcccccCCcCCceeeCcCCc-CCCCCCccccCCCCCCEEeCC
Q 010856          157 FSSNFLTSPLPLE-IGN-LKVLIGIDFSMNNFS--G-VIPTEIGGLKNLEYLFLGYNR-LQGSIPDSFGDLISLKFLNLS  230 (499)
Q Consensus       157 l~~n~l~~~~~~~-~~~-l~~L~~L~l~~n~l~--~-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~  230 (499)
                      ++++.+....... ..+ -++|+.|+++++.=.  . ....--..+|+|.+|||++|. ++......|.+++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            6666544321111 111 134555555554311  0 011112345666666666653 333333345555666666666


Q ss_pred             CCcCCccCcc---cccCCCCCCEEEccC
Q 010856          231 NNNLSGAIPA---SLEKLSYLENLNLSF  255 (499)
Q Consensus       231 ~N~l~~~~~~---~~~~l~~L~~L~l~~  255 (499)
                      .|..  ++|+   .+...|+|.+||+-+
T Consensus       347 RCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  347 RCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhcC--CChHHeeeeccCcceEEEEecc
Confidence            6543  2332   234456666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.48  E-value=4.3e-09  Score=83.99  Aligned_cols=111  Identities=18%  Similarity=0.284  Sum_probs=70.6

Q ss_pred             cccEEEcccCCCcccCCcccc---CCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEE
Q 010856           32 SLEDFRMYNCNISGGIPEEIS---NLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL  108 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  108 (499)
                      .+..++|++|++. .++++..   ....|+..+|++|.+....+..-..++.++.|+|++|.|+ ..|..+..++.|+.|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            4556777777765 3344433   3345556677777777433333344557777777777777 445557777777777


Q ss_pred             eeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc
Q 010856          109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT  145 (499)
Q Consensus       109 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  145 (499)
                      +++.|.+. ..|..+..+.+|-.|+..+|.+..+|..
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            77777777 4555555577777777777777666644

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.7e-09  Score=97.37  Aligned_cols=221  Identities=22%  Similarity=0.243  Sum_probs=136.2

Q ss_pred             CCEEECcCCCCCccCChhccccc-cccccEEEcccCCCccc-CCccccCC-CCCCEEeccCCcCCcc-CCccccCCCCCC
Q 010856            7 LTLIYLSNNPLDGILPKTSVGNL-SHSLEDFRMYNCNISGG-IPEEISNL-TNSTIVNLGGNKLNGS-IPITLSKLQKLQ   82 (499)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~~l-~~~L~~L~l~~n~i~~~-~~~~~~~l-~~L~~L~L~~n~l~~~-~~~~~~~l~~L~   82 (499)
                      -+.||+.+-+|.   |+ .++.+ ......+.+...-+... ..+.+.-. +.|++|||+...|+.. ....++.+.+|+
T Consensus       138 W~~lDl~~r~i~---p~-~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk  213 (419)
T KOG2120|consen  138 WQTLDLTGRNIH---PD-VLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK  213 (419)
T ss_pred             eeeeccCCCccC---hh-HHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence            356777766654   32 22222 22455555554333321 11112211 3588888888877632 223467788888


Q ss_pred             eEecccccccccCCccccCcccccEEeeecCC-CCCc-CCccccCCccCCeeeccccCCCC--CCccccC-CCCCcEEEc
Q 010856           83 GLGLEDNKLEGSIPDDICHLAELYRLDLDGNK-LSGS-LPACFSNLTSLRIVSLGSNKLTS--VPLTFWN-LKDILNLNF  157 (499)
Q Consensus        83 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~-l~~L~~L~l  157 (499)
                      .|.|.++++.+.+...++...+|+.|+|+.+. ++.. ..-.+.+++.|..|+++.|.++.  +...+.. -++|+.|++
T Consensus       214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl  293 (419)
T KOG2120|consen  214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL  293 (419)
T ss_pred             hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence            88888888887777778888888888888764 3311 11235677888888888887764  2211111 257788888


Q ss_pred             CCCcCC---CCCcccccCCCCccEEEccCCc-ccccCcccccCCcCCceeeCcCCcCCCCCCc---cccCCCCCCEEeCC
Q 010856          158 SSNFLT---SPLPLEIGNLKVLIGIDFSMNN-FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD---SFGDLISLKFLNLS  230 (499)
Q Consensus       158 ~~n~l~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~  230 (499)
                      ++.+-.   +.+..-...+++|..||||+|. ++......|-.++-|++|.++.|..  ++|.   .+...|+|.+||+-
T Consensus       294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence            876321   1122223567888899998875 3333334556788899999988864  3444   35777899999987


Q ss_pred             CCc
Q 010856          231 NNN  233 (499)
Q Consensus       231 ~N~  233 (499)
                      ++-
T Consensus       372 g~v  374 (419)
T KOG2120|consen  372 GCV  374 (419)
T ss_pred             ccc
Confidence            763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.44  E-value=8.6e-09  Score=82.26  Aligned_cols=60  Identities=27%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             cCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       198 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      +.++.|+|++|+|+ .+|..+..++.|+.|+++.|++. ..|..+..+.++..|+..+|.+.
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34444444444444 23333444444555555555444 33333333444444554444443

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.43  E-value=9.4e-08  Score=92.54  Aligned_cols=134  Identities=16%  Similarity=0.148  Sum_probs=87.6

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCC------CCccccceeEEcccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH------RNLIKILHGVAVITF  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H------~niv~l~~~~~~~~~  431 (499)
                      --..|......|+|-|++|.+|.. ..|+.||||++.... -..+.=.+|++||+++..      -++++++..|.-.  
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hk--  506 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-VMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHK--  506 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-HHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhc--
Confidence            345688888899999999999995 458899999997543 122344689999998852      3667776544321  


Q ss_pred             ceeeeeecccCCCccccccccc-------ccccccccc------ccccceeeccCCCcccEEEee-CCCeEEEEEEEe
Q 010856          432 TVCLCLFHHSSASASASLVSSL-------TLSRPAKGG------GFRGCVLWHVGVDFAAFVFVL-EPGVEVICFVFE  495 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~~-------~~~~~~~~~------i~~gl~yLH~~~~p~~~l~~~-~~~~~~~~f~~~  495 (499)
                      .+.-+++|-+.-.+.+.+...+       ..++.++.|      ++.-...||.++||.||||+. ..-.++||||-+
T Consensus       507 nHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA  584 (752)
T KOG0670|consen  507 NHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSA  584 (752)
T ss_pred             ceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccc
Confidence            1223345544444333322211       112333334      445556899999999999974 578899999965

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.43  E-value=2.7e-08  Score=88.60  Aligned_cols=186  Identities=20%  Similarity=0.175  Sum_probs=102.0

Q ss_pred             ccCCCCCCeEecccccccccCCcc----ccCcccccEEeeecCCCCCcCCc-------------cccCCccCCeeecccc
Q 010856           75 LSKLQKLQGLGLEDNKLEGSIPDD----ICHLAELYRLDLDGNKLSGSLPA-------------CFSNLTSLRIVSLGSN  137 (499)
Q Consensus        75 ~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L~~n  137 (499)
                      +.+||+|+..+||+|-+....|..    +++-+.|+.|.+++|.+......             -..+-|.|+......|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            345556666666666554443332    33445566666666655422111             1123356777777777


Q ss_pred             CCCCCCcc-----ccCCCCCcEEEcCCCcCCCCC-----cccccCCCCccEEEccCCcccccC----cccccCCcCCcee
Q 010856          138 KLTSVPLT-----FWNLKDILNLNFSSNFLTSPL-----PLEIGNLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYL  203 (499)
Q Consensus       138 ~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L  203 (499)
                      ++...+..     +..-..|+.+.+..|.|....     ...+..+.+|+.||+..|-++...    ...+...+.|++|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            76664432     222346677777777665321     112234567777777777665332    2233455667777


Q ss_pred             eCcCCcCCCCCCccc------cCCCCCCEEeCCCCcCCccCccc-------ccCCCCCCEEEccCCcCcc
Q 010856          204 FLGYNRLQGSIPDSF------GDLISLKFLNLSNNNLSGAIPAS-------LEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       204 ~L~~n~l~~~~~~~l------~~l~~L~~L~l~~N~l~~~~~~~-------~~~l~~L~~L~l~~N~l~~  260 (499)
                      .+.+|-++......+      ...|+|..|...+|.+.+..-..       -..+|-|..|.+.+|++..
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            777777664433322      22467777777777665322111       1346777888888888873

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.39  E-value=6.9e-07  Score=77.89  Aligned_cols=121  Identities=9%  Similarity=-0.057  Sum_probs=78.3

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccCCCcc
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSSASAS  446 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~  446 (499)
                      +.++.|.++.||+++.. +..|++|....... ....+.+|+++++.+.+.++++-.-++..   ...+.+++++.|...
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~~---~~~~lv~e~i~G~~l   78 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFDP---ETGVLITEFIEGSEL   78 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEeC---CCCeEEEEecCCCcc
Confidence            56899999999999874 67899998754432 12346789999998876665543322221   123568888887654


Q ss_pred             ccccccccccccccccccccce-----------eeccCCCcccEEEeeCCCeEEEEEEEee
Q 010856          447 ASLVSSLTLSRPAKGGGFRGCV-----------LWHVGVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       447 ~~l~~~~~~~~~~~~~i~~gl~-----------yLH~~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .....   .......+++++++           ++|.|.+|.|++++ ++++.++||+.+.
T Consensus        79 ~~~~~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          79 LTEDF---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             ccccc---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            42210   11111122332222           47888999999998 7789999999764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.37  E-value=7.7e-07  Score=76.19  Aligned_cols=102  Identities=23%  Similarity=0.207  Sum_probs=54.6

Q ss_pred             CCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCC-CccccCCCCCCEEeC
Q 010856          151 DILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI-PDSFGDLISLKFLNL  229 (499)
Q Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l  229 (499)
                      ....+||++|.+..  ...|..++.|.+|.+++|+|+.+.|.--.-+++|..|.|.+|.|.... .+.+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            34455555555542  234555566666666666666555544444556666666666655321 233455566666666


Q ss_pred             CCCcCCccCc---ccccCCCCCCEEEcc
Q 010856          230 SNNNLSGAIP---ASLEKLSYLENLNLS  254 (499)
Q Consensus       230 ~~N~l~~~~~---~~~~~l~~L~~L~l~  254 (499)
                      -+|+++...-   ..+..+|+|+.||.+
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehh
Confidence            6666553211   234455666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.36  E-value=6.4e-07  Score=76.68  Aligned_cols=103  Identities=21%  Similarity=0.249  Sum_probs=58.3

Q ss_pred             CEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecccc
Q 010856           58 TIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSN  137 (499)
Q Consensus        58 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  137 (499)
                      +.++|.+.++..+.. .=.-+.+...+||++|.+...  +.|..++.|.+|.|++|+|+.+.|..-.-+++|+.|.|.+|
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            455566555542211 001223456677777776533  45666777777777777777665554455566777777777


Q ss_pred             CCCCCCc--cccCCCCCcEEEcCCCcCC
Q 010856          138 KLTSVPL--TFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus       138 ~l~~~~~--~~~~l~~L~~L~l~~n~l~  163 (499)
                      +|..+.+  .+..+|+|++|.+-+|.++
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchh
Confidence            6665422  3445556666665555554

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=2.8e-07  Score=98.11  Aligned_cols=132  Identities=20%  Similarity=0.209  Sum_probs=78.8

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC---CCCccccceeE-------Ecc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR---HRNLIKILHGV-------AVI  429 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~---H~niv~l~~~~-------~~~  429 (499)
                      -..|.+.+.+|+|+||+||+|...+|+.||+|+=++.....   |.---+++.+++   -+.|+.+..++       ...
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE---fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~  773 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE---FYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVS  773 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCcee---eeehHHHHHhhchhhhcchHHHHHHHccCCcceeee
Confidence            35677888999999999999998779999999887655321   111112333333   12233333222       223


Q ss_pred             ccceeeeeecccCCCccccccccccccccccccc------cccceeeccCCCcccEEEee-------CCCeEEEEEEEee
Q 010856          430 TFTVCLCLFHHSSASASASLVSSLTLSRPAKGGG------FRGCVLWHVGVDFAAFVFVL-------EPGVEVICFVFEI  496 (499)
Q Consensus       430 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i------~~gl~yLH~~~~p~~~l~~~-------~~~~~~~~f~~~~  496 (499)
                      +|..+|.|.+++.+..    ..++.+...++.|+      +++...+|-|+||.|+|+.+       ..+.++||||-+|
T Consensus       774 ey~~~Gtlld~~N~~~----~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si  849 (974)
T KOG1166|consen  774 EYSPYGTLLDLINTNK----VMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI  849 (974)
T ss_pred             eccccccHHHhhccCC----CCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccce
Confidence            4444555555444221    11222222223343      45666677799999998843       2489999999887


Q ss_pred             cc
Q 010856          497 LL  498 (499)
Q Consensus       497 ~~  498 (499)
                      -+
T Consensus       850 Dm  851 (974)
T KOG1166|consen  850 DM  851 (974)
T ss_pred             ee
Confidence            43

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.34  E-value=1.6e-06  Score=84.09  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=16.0

Q ss_pred             CCCcEEEcCCCcCCCCCcccccCCCCccEEEccCC
Q 010856          150 KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN  184 (499)
Q Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  184 (499)
                      ++|++|++++|.... .|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence            456666666555432 222222  45666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.33  E-value=5.6e-08  Score=86.66  Aligned_cols=230  Identities=17%  Similarity=0.147  Sum_probs=151.7

Q ss_pred             cCCCCCCEEeccCCcCCccCC----ccccCCCCCCeEeccccccc---cc-------CCccccCcccccEEeeecCCCCC
Q 010856           52 SNLTNSTIVNLGGNKLNGSIP----ITLSKLQKLQGLGLEDNKLE---GS-------IPDDICHLAELYRLDLDGNKLSG  117 (499)
Q Consensus        52 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~---~~-------~~~~~~~l~~L~~L~L~~n~l~~  117 (499)
                      ..+..++.++||+|.|.....    ..+.+-.+|+..++++-...   ..       +...+.++++|+..+||+|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            345677777777777764322    23445566777766653211   11       22346678999999999999886


Q ss_pred             cCCcc----ccCCccCCeeeccccCCCCCCc--------------cccCCCCCcEEEcCCCcCCCCCc----ccccCCCC
Q 010856          118 SLPAC----FSNLTSLRIVSLGSNKLTSVPL--------------TFWNLKDILNLNFSSNFLTSPLP----LEIGNLKV  175 (499)
Q Consensus       118 ~~~~~----~~~l~~L~~L~L~~n~l~~~~~--------------~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~  175 (499)
                      ..|..    +++-+.|++|.|++|.+.-+..              ...+-|.|+......|++..-..    ..+..-..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            65543    4566889999999998765321              23456889999999999864211    22333468


Q ss_pred             ccEEEccCCcccccCc-----ccccCCcCCceeeCcCCcCCCC----CCccccCCCCCCEEeCCCCcCCccCcccc----
Q 010856          176 LIGIDFSMNNFSGVIP-----TEIGGLKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNLSNNNLSGAIPASL----  242 (499)
Q Consensus       176 L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~----  242 (499)
                      |+.+.+..|.|.....     ..+..+.+|+.|||.+|-++-.    ....+...+.|+.|.+.+|-++.....++    
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f  266 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF  266 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence            8999999998863311     2235678999999999988743    23445667889999999998875443322    


Q ss_pred             --cCCCCCCEEEccCCcCcccCCCC--------CCCCCccccccCCCcC
Q 010856          243 --EKLSYLENLNLSFNKLEGEIPRG--------GSFGNFSAESFEGNEL  281 (499)
Q Consensus       243 --~~l~~L~~L~l~~N~l~~~~~~~--------~~~~~l~~~~l~~N~~  281 (499)
                        ...|+|..|-..+|...+.+-..        ..+|.+..+...||..
T Consensus       267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence              23588899999999887643222        2344555566677764

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.25  E-value=5.2e-06  Score=80.54  Aligned_cols=32  Identities=22%  Similarity=0.169  Sum_probs=15.6

Q ss_pred             cCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCC
Q 010856          198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNN  232 (499)
Q Consensus       198 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N  232 (499)
                      ++|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            35556666555543 2232222  35666666554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.12  E-value=1.3e-07  Score=84.30  Aligned_cols=106  Identities=14%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             ccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          364 SENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      ....++.+...|+.|+|++. |..+++|++.-+.  ....++|..|.--++-+.||||+.++|+|..+.  ....+-.||
T Consensus       193 nl~tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnspp--nlv~isq~m  269 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPP--NLVIISQYM  269 (448)
T ss_pred             hhhhhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCC--CceEeeeec
Confidence            34456888899999999984 4466677775443  344578999999999999999999999996642  122233444


Q ss_pred             C-CCccccccc------cccccccccccccccceeecc
Q 010856          442 S-ASASASLVS------SLTLSRPAKGGGFRGCVLWHV  472 (499)
Q Consensus       442 ~-~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~  472 (499)
                      . |+++..++.      +....-+.|+.+|+|++|||+
T Consensus       270 p~gslynvlhe~t~vvvd~sqav~faldiargmaflhs  307 (448)
T KOG0195|consen  270 PFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHS  307 (448)
T ss_pred             cchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhh
Confidence            3 222222322      122333446899999999999

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=2.3e-06  Score=55.35  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=16.2

Q ss_pred             cCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCC
Q 010856          128 SLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus       128 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~  163 (499)
                      +|++|++++|+|+++|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444444444444444444444444444

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.04  E-value=1.2e-05  Score=66.35  Aligned_cols=85  Identities=16%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             ccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCcc
Q 010856           49 EEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTS  128 (499)
Q Consensus        49 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  128 (499)
                      .+|.++++|+.+.+.. .+..+....|.++++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3445555555555543 344344444555555555555443 3333334444544455555533 333233344444555


Q ss_pred             CCeeeccc
Q 010856          129 LRIVSLGS  136 (499)
Q Consensus       129 L~~L~L~~  136 (499)
                      |+.+.+..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            55555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=4.9e-06  Score=53.85  Aligned_cols=36  Identities=31%  Similarity=0.615  Sum_probs=16.3

Q ss_pred             CCCeEecccccccccCCccccCcccccEEeeecCCCC
Q 010856           80 KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS  116 (499)
Q Consensus        80 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  116 (499)
                      +|++|++++|+|+. +|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            44555555555552 2223445555555555555544

...

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=1.3e-06  Score=90.64  Aligned_cols=133  Identities=18%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             ccccccccCCcceEEEEEe-CCCCEEEEEEee----ccC-Cc-cHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          364 SENNLIGKGGFGSVYKARL-GDRMEVAVKVFN----LQC-GR-AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~----~~~-~~-~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ....++|.|++|.|+.... .....++.|...    ... .. ....+..|..+-..+.|||++..+..+......  ..
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~--~~  398 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGI--LQ  398 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccc--hh
Confidence            3467899999997777763 334444555432    111 11 112266788888899999998777655442211  11


Q ss_pred             eecccCCCcccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSSASASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .+||+.++++..+.....    .+.....|+.+|+.|+|+      ++||+|.+++.++.++++|||.+.|.
T Consensus       399 ~mE~~~~Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf  470 (601)
T KOG0590|consen  399 SMEYCPYDLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVF  470 (601)
T ss_pred             hhhcccHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceee
Confidence            255554444443322211    122334789999999988      78999999999999999999998874

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.96  E-value=2e-05  Score=65.09  Aligned_cols=121  Identities=21%  Similarity=0.265  Sum_probs=65.4

Q ss_pred             ccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCccc
Q 010856           25 SVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAE  104 (499)
Q Consensus        25 ~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  104 (499)
                      .+.... +|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+....|.++++|+.+.+.+ .+.......|...++
T Consensus         7 ~F~~~~-~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCS-NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-T-T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCC-CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            555555 688888774 566677777888888888888775 6666667788887788888865 444455567777888


Q ss_pred             ccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCC-ccccCCCCC
Q 010856          105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDI  152 (499)
Q Consensus       105 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L  152 (499)
                      |+.+++..+ +..+....|.++ +|+.+.+.. .+..++ ..|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            888888665 555666677776 888887775 444443 345555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=3.9e-06  Score=88.26  Aligned_cols=108  Identities=15%  Similarity=0.207  Sum_probs=48.4

Q ss_pred             CCCCCEEeccCCcCCcc-CCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCC-cCCccccCCccCCe
Q 010856           54 LTNSTIVNLGGNKLNGS-IPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SLPACFSNLTSLRI  131 (499)
Q Consensus        54 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  131 (499)
                      +|.|+.|.+++=.+... ......++++|..||+|+.+++..  .+++.+++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            45555555554333211 112233455555555555555433  344555555555554443331 00112334555555


Q ss_pred             eeccccCCCCCCc-------cccCCCCCcEEEcCCCcCC
Q 010856          132 VSLGSNKLTSVPL-------TFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus       132 L~L~~n~l~~~~~-------~~~~l~~L~~L~l~~n~l~  163 (499)
                      ||+|.......+.       .-..+|+|+.||.|++.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            5555544433221       1223566666666655554

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.74  E-value=4.4e-05  Score=69.61  Aligned_cols=79  Identities=8%  Similarity=0.047  Sum_probs=53.4

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCC--CccccceeEEcccc-ceeeeeecccC
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHR--NLIKILHGVAVITF-TVCLCLFHHSS  442 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~--niv~l~~~~~~~~~-~~~~~l~~~~~  442 (499)
                      +.++.|..+.+|+++..+|+.+++|....... ....++.+|.++++.+.+.  .+.+++.+...... ...+.+++++.
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            56899999999999986678899998765432 2345789999999998763  45666655433110 12245677776


Q ss_pred             CCc
Q 010856          443 ASA  445 (499)
Q Consensus       443 ~~~  445 (499)
                      |..
T Consensus        84 G~~   86 (223)
T cd05154          84 GRV   86 (223)
T ss_pred             CEe
Confidence            653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.71  E-value=5.6e-05  Score=66.70  Aligned_cols=125  Identities=14%  Similarity=0.053  Sum_probs=76.1

Q ss_pred             cccccCCcceEEEEEeCC-------CCEEEEEEeeccC------------C---------cc-HHHH----HHHHHHHhc
Q 010856          367 NLIGKGGFGSVYKARLGD-------RMEVAVKVFNLQC------------G---------RA-FESF----DVECEMMKN  413 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~-------~~~vavK~~~~~~------------~---------~~-~~~~----~~E~~il~~  413 (499)
                      -.||.|.-+.||.|...+       +..+|||+.+...            .         .. .+.+    .+|.+.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999998543       4799999885321            0         00 1223    389999988


Q ss_pred             CCC--CCccccceeEEccccceeeeeecccCCCccc--cccc---cccccccccccccccc-------eeeccCCCcccE
Q 010856          414 IRH--RNLIKILHGVAVITFTVCLCLFHHSSASASA--SLVS---SLTLSRPAKGGGFRGC-------VLWHVGVDFAAF  479 (499)
Q Consensus       414 l~H--~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~---~~~~~~~~~~~i~~gl-------~yLH~~~~p~~~  479 (499)
                      +.-  -++.+.+++      ....++||+++++...  .+..   .......+..+++.+|       ...|.|..|.|+
T Consensus        83 l~~~Gv~vP~pi~~------~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NI  156 (197)
T cd05146          83 MQKAGIPCPEVVVL------KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNM  156 (197)
T ss_pred             HHHcCCCCCeEEEe------cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHE
Confidence            753  355555543      2345578888764211  1111   0001111122333333       467779999999


Q ss_pred             EEeeCCCeEEEEEEEeecc
Q 010856          480 VFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       480 l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++. ++++.+||||.++..
T Consensus       157 L~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         157 LWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             EEE-CCcEEEEECCCceeC
Confidence            995 678999999988753

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.68  E-value=1.4e-05  Score=84.24  Aligned_cols=56  Identities=18%  Similarity=0.238  Sum_probs=22.9

Q ss_pred             CccCCeeeccccCCCC--CCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccC
Q 010856          126 LTSLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSM  183 (499)
Q Consensus       126 l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  183 (499)
                      +|+|+.|.+++-.+..  +..-..++|+|..||+|+.+++..  ..++++++|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence            3444444444433322  122223344444444444444432  3334444444444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=2.1e-06  Score=77.12  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=52.2

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccC-CccccCcccccEEee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSI-PDDICHLAELYRLDL  110 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  110 (499)
                      +.+.|++.+|.++++  .....++.|+.|.|+-|.|+...|  |..+++|++|+|..|.|.+.. -..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            455566666666543  223455666666666666654332  555666666666666655331 123456666666666


Q ss_pred             ecCCCCCcCCc-----cccCCccCCeee
Q 010856          111 DGNKLSGSLPA-----CFSNLTSLRIVS  133 (499)
Q Consensus       111 ~~n~l~~~~~~-----~~~~l~~L~~L~  133 (499)
                      ..|.-.+..+.     .+.-+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            66665543322     233455555554

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.61  E-value=4.7e-06  Score=83.26  Aligned_cols=128  Identities=15%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             ccccCCcceEEEEEe----CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeeeecc
Q 010856          368 LIGKGGFGSVYKARL----GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       368 ~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      ++|+|.||.|+.++.    ..|..||+|++++...  +.......|..++...+ ||.+|++..++. .+......+.+.
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafq-t~~kl~l~ld~~   79 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQ-TDGKLYLILDFL   79 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeec-cccchhHhhhhc
Confidence            479999999997762    3478899999976542  22335667888999887 999999875544 344444444455


Q ss_pred             cCCCccccccccccccccc----cccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          441 SSASASASLVSSLTLSRPA----KGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       441 ~~~~~~~~l~~~~~~~~~~----~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      -+|+++..+..........    ...++-|++++|.      +.||.||+++-+|-+++.|||.++
T Consensus        80 rgg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglsk  145 (612)
T KOG0603|consen   80 RGGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSK  145 (612)
T ss_pred             ccchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhh
Confidence            5556655544333222211    2455666666665      899999999888889999999875

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.52  E-value=0.00021  Score=72.59  Aligned_cols=129  Identities=13%  Similarity=0.041  Sum_probs=81.0

Q ss_pred             cccccCCcceEEEEEeCCCCEEEEEEeeccCCcc------------------------------HH----------HHHH
Q 010856          367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRA------------------------------FE----------SFDV  406 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~------------------------------~~----------~~~~  406 (499)
                      ..++.++-|+||+|++++|+.||||+.+++-...                              .+          ++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            6789999999999999999999999987532100                              00          1234


Q ss_pred             HHHHHhcC----CCCCccccceeEEccccceeeeeecccCCCcccccc---cccccccccc--------ccccccceeec
Q 010856          407 ECEMMKNI----RHRNLIKILHGVAVITFTVCLCLFHHSSASASASLV---SSLTLSRPAK--------GGGFRGCVLWH  471 (499)
Q Consensus       407 E~~il~~l----~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~---~~~~~~~~~~--------~~i~~gl~yLH  471 (499)
                      |.+-+.++    +..-=+++-.+|++.. ...++.+||+.|-....+.   ........++        .|+.+ -.|.|
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t-~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~-dgffH  288 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYT-TRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLR-DGFFH  288 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhcc-CCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cCccc
Confidence            44433332    2222222333444321 2345578888887555432   1111112221        44444 67899


Q ss_pred             cCCCcccEEEeeCCCeEEEEEEEeec
Q 010856          472 VGVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       472 ~~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .|.+|.|+++..++....+|||+-.-
T Consensus       289 aDpHpGNi~v~~~g~i~~lDfGi~g~  314 (517)
T COG0661         289 ADPHPGNILVRSDGRIVLLDFGIVGR  314 (517)
T ss_pred             cCCCccceEEecCCcEEEEcCcceec
Confidence            99999999999999999999998654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.50  E-value=4.4e-05  Score=68.48  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=15.1

Q ss_pred             CCccCCeeeccccCCCCCCccccCCCCCcEEEcCCC
Q 010856          125 NLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN  160 (499)
Q Consensus       125 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n  160 (499)
                      .+..|+.|++.+..++++. .+-.+++|+.|.++.|
T Consensus        41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDN   75 (260)
T ss_pred             cccchhhhhhhccceeecc-cCCCcchhhhhcccCC
Confidence            3444555555554444322 1223344444444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.45  E-value=7.8e-05  Score=66.88  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=14.0

Q ss_pred             ccccEEeeecCCCCCcCCccccCCccCCeeecccc
Q 010856          103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSN  137 (499)
Q Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  137 (499)
                      ..|+.|.+.+..++..  ..|..+++|+.|.++.|
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDN   75 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCC
Confidence            3344444444444321  22334445555555555

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.42  E-value=1.4e-05  Score=87.28  Aligned_cols=81  Identities=12%  Similarity=-0.089  Sum_probs=50.2

Q ss_pred             cCCC-CCccccceeEEcc-----ccceeeeeecccCCCcccccccc-----ccccccccccccccceeecc------CCC
Q 010856          413 NIRH-RNLIKILHGVAVI-----TFTVCLCLFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVD  475 (499)
Q Consensus       413 ~l~H-~niv~l~~~~~~~-----~~~~~~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~  475 (499)
                      .++| +||.++++++...     +...++.++|++++++.+.+...     ......++.||++||+|||+      ++|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlK  107 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVR  107 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCC
Confidence            3445 5777888776211     11234445677777776655322     12233446899999999987      799


Q ss_pred             cccEEEeeCCCeEEEEEE
Q 010856          476 FAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       476 p~~~l~~~~~~~~~~~f~  493 (499)
                      |.|||+...+.++++|||
T Consensus       108 P~NiLl~~~~~~k~~d~~  125 (793)
T PLN00181        108 PSCFVMSSFNHVSFIESA  125 (793)
T ss_pred             chhEEEcccCcEEEeecc
Confidence            999999654444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=6.6e-06  Score=73.99  Aligned_cols=100  Identities=22%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             CCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCCCCC
Q 010856            4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIP-ITLSKLQKLQ   82 (499)
Q Consensus         4 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~   82 (499)
                      +.+.+.|++.+|.++++   .....++ .|+.|.|+-|.|+..-|  |..+++|++|+|..|.|..+.. ..+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp-~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMP-LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcc-cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            44667788888888766   2334566 78888888888876533  7778888888888888774321 2357788888


Q ss_pred             eEecccccccccCCc-----cccCcccccEEe
Q 010856           83 GLGLEDNKLEGSIPD-----DICHLAELYRLD  109 (499)
Q Consensus        83 ~L~L~~n~l~~~~~~-----~~~~l~~L~~L~  109 (499)
                      .|+|..|.-.+..+.     .+.-+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888876544432     355677777763

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.27  E-value=0.0011  Score=60.37  Aligned_cols=126  Identities=14%  Similarity=-0.022  Sum_probs=84.7

Q ss_pred             hcccccccccCCcceEEEEEeCCCCEEEEEEeeccCC----------------------ccHHHHHHHHHHHhcCCCC--
Q 010856          362 EFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG----------------------RAFESFDVECEMMKNIRHR--  417 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~----------------------~~~~~~~~E~~il~~l~H~--  417 (499)
                      -..+...||.|.-+.||.|..+.|..+|||.-+.+..                      -.+....+|.++|.++.-.  
T Consensus        92 ve~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          92 VEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HHhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            3456688999999999999999999999996543210                      0123357899999988544  


Q ss_pred             CccccceeEEccccceeeeeecccCCCccccccc-cccc---ccccc--ccccccceeeccCCCcccEEEeeCCCeEEEE
Q 010856          418 NLIKILHGVAVITFTVCLCLFHHSSASASASLVS-SLTL---SRPAK--GGGFRGCVLWHVGVDFAAFVFVLEPGVEVIC  491 (499)
Q Consensus       418 niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~---~~~~~--~~i~~gl~yLH~~~~p~~~l~~~~~~~~~~~  491 (499)
                      .|.+.+++      .-..++|++..|-.+..++. .++.   ...+.  ...+--..|.|-|..+=||+++.++++.+||
T Consensus       172 ~VP~P~~~------nRHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~~~vID  245 (304)
T COG0478         172 KVPKPIAW------NRHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVID  245 (304)
T ss_pred             CCCCcccc------ccceeeeehcccceeecccCcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCCEEEEe
Confidence            66665543      22245677777655444441 1111   11111  2233466789999999999999999999999


Q ss_pred             EE
Q 010856          492 FV  493 (499)
Q Consensus       492 f~  493 (499)
                      |=
T Consensus       246 wP  247 (304)
T COG0478         246 WP  247 (304)
T ss_pred             Cc
Confidence            83

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.14  E-value=0.0005  Score=64.25  Aligned_cols=134  Identities=18%  Similarity=0.175  Sum_probs=73.3

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCC----------CCccccceeEE
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRH----------RNLIKILHGVA  427 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H----------~niv~l~~~~~  427 (499)
                      .+.....||.|+++.||.++. .+|+.+|+|+.....   ....+++.+|.-....+.+          -.++--++...
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            355678899999999999997 569999999985433   3345667777755544332          12222222221


Q ss_pred             c----------cc---c--ceeeeeecccCCCccccccc---cccc-------c-ccccccccccceeec------cCCC
Q 010856          428 V----------IT---F--TVCLCLFHHSSASASASLVS---SLTL-------S-RPAKGGGFRGCVLWH------VGVD  475 (499)
Q Consensus       428 ~----------~~---~--~~~~~l~~~~~~~~~~~l~~---~~~~-------~-~~~~~~i~~gl~yLH------~~~~  475 (499)
                      .          .+   +  .....++.-+.+++...+..   ....       . ..+..|+++.+++||      .+++
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~  172 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK  172 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccc
Confidence            1          00   1  01234556666665443221   1011       1 111155565555554      5999


Q ss_pred             cccEEEeeCCCeEEEEEEEe
Q 010856          476 FAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       476 p~~~l~~~~~~~~~~~f~~~  495 (499)
                      |.||+++.++++.+-||+.-
T Consensus       173 ~~nfll~~~G~v~Lg~F~~~  192 (288)
T PF14531_consen  173 PENFLLDQDGGVFLGDFSSL  192 (288)
T ss_dssp             GGGEEE-TTS-EEE--GGGE
T ss_pred             eeeEEEcCCCCEEEcChHHH
Confidence            99999999999999999754

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.02  E-value=0.0016  Score=57.22  Aligned_cols=115  Identities=17%  Similarity=0.001  Sum_probs=66.8

Q ss_pred             eEEEEEeCCCCEEEEEEeeccC-------------Cc-------------cHHHHHHHHHHHhcCCCC--CccccceeEE
Q 010856          376 SVYKARLGDRMEVAVKVFNLQC-------------GR-------------AFESFDVECEMMKNIRHR--NLIKILHGVA  427 (499)
Q Consensus       376 ~v~~~~~~~~~~vavK~~~~~~-------------~~-------------~~~~~~~E~~il~~l~H~--niv~l~~~~~  427 (499)
                      .||.|..++|..+|+|..+...             ..             ......+|.+.|.++...  ++.+.+++. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            3899998899999999885421             00             023467899999999766  455554321 


Q ss_pred             ccccceeeeeecccC--CCccccccccc---ccccccc-------ccccccceeeccCCCcccEEEeeCCCeEEEEEEEe
Q 010856          428 VITFTVCLCLFHHSS--ASASASLVSSL---TLSRPAK-------GGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~--~~~~~~l~~~~---~~~~~~~-------~~i~~gl~yLH~~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                           ...++|||++  |.....+....   .....+.       ..+.+.....|-|..+-||++.++ ++.+||||-+
T Consensus        80 -----~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~-~~~iIDf~qa  153 (188)
T PF01163_consen   80 -----RNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG-KVYIIDFGQA  153 (188)
T ss_dssp             -----TTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT-CEEE--GTTE
T ss_pred             -----CCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc-eEEEEecCcc
Confidence                 2346788887  55444333222   1111111       122334567899999999999665 9999999976


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      +-
T Consensus       154 v~  155 (188)
T PF01163_consen  154 VD  155 (188)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	499
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-23
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-23
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-20
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-10
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		3e-09
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		9e-09
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		5e-07
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		9e-05
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		9e-05
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		9e-05
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-04
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-04
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		1e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 145/351 (41%), Gaps = 57/351 (16%)
Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +SNC  L  ++LS N L G +P +S+G+LS  L D +++   + G IP+E+  +     +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIP-SSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 61  NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  N L G IP  LS           +N+L G IP  I  L  L  L L  N  SG++P
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSS-------------------- 159
           A   +  SL  + L +N    ++P   +     +  NF +                    
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 160 -------------NFLTSPLPLEI-------------GNLKVLIGIDFSMNNFSGVIPTE 193
                        N L++  P  I              N   ++ +D S N  SG IP E
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNL 253
           IG +  L  L LG+N + GSIPD  GDL              G IP ++  L+ L  ++L
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 254 SFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTS-----IHH 299
           S N L G IP  G F  F    F  N  LCG P   +P C  S      HH
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPSNADGYAHH 756

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 83/207 (40%), Gaps = 34/207 (16%)
Query: 93  GSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDI 152
           G +  D C   EL  L + GNK+SG +    S   +L  + + SN  ++      +   +
Sbjct: 167 GWVLSDGC--GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 222
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
            +L+ S N L+      I     L  ++ S N F G IP     LK+L+YL L  N+  G
Sbjct: 223 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTG 280
Query: 213 SIPD-------------------------SFGDLIXXXXXXXXXXXXXGAIPA-SLEKLS 246
            IPD                          FG                G +P  +L K+ 
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 247 YLENLNLSFNKLEGEIPRGGSFGNFSA 273
            L+ L+LSFN+  GE+P   S  N SA
Sbjct: 341 GLKVLDLSFNEFSGELPE--SLTNLSA 365

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 143/343 (41%), Gaps = 52/343 (15%)
Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +SNC  L  ++LS N L G +P +S+G+LS  L D +++   + G IP+E+  +     +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIP-SSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 61  NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  N L G IP  LS           +N+L G IP  I  L  L  L L  N  SG++P
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSS-------------------- 159
           A   +  SL  + L +N    ++P   +     +  NF +                    
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 160 -------------NFLTSPLPLEI-------------GNLKVLIGIDFSMNNFSGVIPTE 193
                        N L++  P  I              N   ++ +D S N  SG IP E
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNL 253
           IG +  L  L LG+N + GSIPD  GDL              G IP ++  L+ L  ++L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 254 SFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTS 296
           S N L G IP  G F  F    F  N  LCG P   +P C  S
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPS 751

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 34/208 (16%)
Query: 93  GSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDI 152
           G +  D C   EL  L + GNK+SG +    S   +L  + + SN  ++      +   +
Sbjct: 170 GWVLSDGC--GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
            +L+ S N L+      I     L  ++ S N F G IP     LK+L+YL L  N+  G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283
Query: 213 SIPD-------------------------SFGDLIXXXXXXXXXXXXXGAIPA-SLEKLS 246
            IPD                          FG                G +P  +L K+ 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 247 YLENLNLSFNKLEGEIPRGGSFGNFSAE 274
            L+ L+LSFN+  GE+P   S  N SA 
Sbjct: 344 GLKVLDLSFNEFSGELPE--SLTNLSAS 369

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 15/270 (5%)
Query: 34  EDFRMYNCNISG-------GIPEEISNLTNSTIVNLGG-NKLNGSIPITLSXXXXXXXXX 85
           + +R+ N ++SG        IP  ++NL     + +GG N L G IP  ++         
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 86  XEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT-SVPL 144
                + G+IPD +  +  L  LD   N LSG+LP   S+L +L  ++   N+++ ++P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 145 TFWNLKDIL-NLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL 203
           ++ +   +  ++  S N LT  +P    NL +   +D S N   G      G  KN + +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 204 FLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFNKLEGEIP 263
            L  N L   +    G                G +P  L +L +L +LN+SFN L GEIP
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 264 RGGSFGNFSAESFEGNELLCGSPNLQVPPC 293
           +GG+   F   ++  N+ LCGSP   +P C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKD 151
           +IP +I   A+  +LDL  NKLS SLP+  F  LT LR++ L  NKL ++P   F  LK+
Sbjct: 30  AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 152 ILNLNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 210
           +  L  + N L + LP+ +   L  L  +    N    + P     L  L YL LGYN L
Sbjct: 87  LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 211 QGSIPDSFGDLIXXXXXXXXXXXXXGAIP-ASLEKLSYLENLNLSFNKLEGEIPRGG 266
           Q S+P    D +               +P  + +KL+ L+ L L  N+L+  +P G 
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 349 RTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE-SFDVE 407
           + FS  EL  A+D FS  N++G+GGFG VYK RL D   VAVK    +  +  E  F  E
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 408 CEMMKNIRHRNLIKI 422
            EM+    HRNL+++
Sbjct: 86  VEMISMAVHRNLLRL 100

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 349 RTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE-SFDVE 407
           + FS  EL  A+D F   N++G+GGFG VYK RL D   VAVK    +  +  E  F  E
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 408 CEMMKNIRHRNLIKI 422
            EM+    HRNL+++
Sbjct: 78  VEMISMAVHRNLLRL 92

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLP 167
           DL  +K+   L + FS+ T L  ++L  N++  +    FW L  +L LN S NFL S   
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 168 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
               NL  L  +D S N+   +      GL NL+ L L  N+L+ S+PD   D
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNL-------QCGRAFESFDVECEM 410
           A +E      IGKGGFG V+K RL  D+  VA+K   L       +    F+ F  E  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 411 MKNIRHRNLIKILHGV------AVITFTVCLCLFH 439
           M N+ H N++K L+G+       V+ F  C  L+H
Sbjct: 77  MSNLNHPNIVK-LYGLMHNPPRMVMEFVPCGDLYH 110

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNL-------QCGRAFESFDVECEM 410
           A +E      IGKGGFG V+K RL  D+  VA+K   L       +    F+ F  E  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 411 MKNIRHRNLIKILHGV------AVITFTVCLCLFH 439
           M N+ H N++K L+G+       V+ F  C  L+H
Sbjct: 77  MSNLNHPNIVK-LYGLMHNPPRMVMEFVPCGDLYH 110

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNL-------QCGRAFESFDVECEM 410
           A +E      IGKGGFG V+K RL  D+  VA+K   L       +    F+ F  E  +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 411 MKNIRHRNLIKILHGV------AVITFTVCLCLFH 439
           M N+ H N++K L+G+       V+ F  C  L+H
Sbjct: 77  MSNLNHPNIVK-LYGLMHNPPRMVMEFVPCGDLYH 110

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 348 WRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVK----VFNLQC 397
           + +FS+ EL   T+ F E       N +G+GGFG VYK  + +   VAVK    + ++  
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 398 GRAFESFDVECEMMKNIRHRNLIKIL 423
               + FD E ++M   +H NL+++L
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELL 96

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 348 WRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVK----VFNLQC 397
           + +FS+ EL   T+ F E       N +G+GGFG VYK  + +   VAVK    + ++  
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 398 GRAFESFDVECEMMKNIRHRNLIKIL 423
               + FD E ++M   +H NL+++L
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELL 96

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 348 WRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVK----VFNLQC 397
           + +FS+ EL   T+ F E       N +G+GGFG VYK  + +   VAVK    + ++  
Sbjct: 6   FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 64
Query: 398 GRAFESFDVECEMMKNIRHRNLIKIL 423
               + FD E ++M   +H NL+++L
Sbjct: 65  EELKQQFDQEIKVMAKCQHENLVELL 90

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS 164
           L RL L+GN L+  LPA   NL++LR++ L  N+LTS+P    +   +    F  N +T+
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 165 PLPLEIGNL 173
            LP E GNL
Sbjct: 308 -LPWEFGNL 315

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 89  NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFW 147
           N+++    D+      L  L+L+ N +S   P  F+NL +LR + L SN+L  +PL  F 
Sbjct: 42  NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 148 NLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 205
            L ++  L+ S N +   L     +L  L  ++   N+   +      GL +LE L L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	499
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-90
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-70
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-40
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-39
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-15
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	9e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-11
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-10
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-10
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	5e-10
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	6e-10
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	7e-10
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-09
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-09
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-09
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	3e-09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-09
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-09
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-09
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	6e-09
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	6e-09
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	8e-09
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	8e-09
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	9e-09
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-08
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	3e-08
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-08
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-08
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-08
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	6e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	6e-08
4aoj_A	329	High affinity nerve growth factor receptor; transf	6e-08
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	6e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-06
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-08
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	7e-08
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	8e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-08
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	9e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-07
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-07
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-07
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-07
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-07
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-07
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-07
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-07
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-07
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-07
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-07
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	4e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	5e-07
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	7e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	7e-07
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	7e-07
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-07
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	8e-07
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-06
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-06
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	3e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-06
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-06
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	4e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-06
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	6e-06
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	6e-06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	7e-06
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	7e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-05
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-05
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-05
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-05
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-05
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	8e-05
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	8e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	9e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	9e-05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	9e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-04
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-04
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	4e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	5e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-04
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	6e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	7e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	7e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	8e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	8e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  278 bits (713), Expect = 1e-90
 Identities = 86/295 (29%), Positives = 133/295 (45%), Gaps = 30/295 (10%)

Query: 1   MSNCKSLTLIYLSNNPLDGILP-KTSVGNLSHSLEDFRMYNCN-ISGGIPEEISNLTNST 58
            +    +  + LS   L    P  +S+ NL   L    +   N + G IP  I+ LT   
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 59  IVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS 118
            + +    ++G+IP  LS+++ L  L    N L G++P  I  L  L  +  DGN++SG+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
           +P  + + + L                        ++  S N LT  +P    NL  L  
Sbjct: 165 IPDSYGSFSKL----------------------FTSMTISRNRLTGKIPPTFANLN-LAF 201

Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAI 238
           +D S N   G      G  KN + + L  N L   +    G   +L  L+L NN + G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 239 PASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPC 293
           P  L +L +L +LN+SFN L GEIP+GG+   F   ++  N+ LCGSP   +P C
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (384), Expect = 4e-42
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 27/188 (14%)

Query: 88  DNKLEGSIPDDICHLAELYRLDLDGNKLSGS--LPACFSNLTSLRIVSLGSNKLTSVPLT 145
           +    G + D       +  LDL G  L     +P+  +NL  L  + +G          
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-------- 86

Query: 146 FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 205
                         N L  P+P  I  L  L  +  +  N SG IP  +  +K L  L  
Sbjct: 87  --------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 206 GYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYL-ENLNLSFNKLEGEIPR 264
            YN L G++P S   L +L  +    N +SGAIP S    S L  ++ +S N+L G+IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 265 GGSFGNFS 272
             +F N +
Sbjct: 193 --TFANLN 198

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  109 bits (275), Expect = 6e-27
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 154 NLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGV--IPTEIGGLKNLEYLFL-GYNRL 210
             +  +      L         +  +D S  N      IP+ +  L  L +L++ G N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 211 QGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
            G IP +   L  L +L +++ N+SGAIP  L ++  L  L+ S+N L G +P   S  +
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--SISS 147

Query: 271 FS 272
             
Sbjct: 148 LP 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  284 bits (730), Expect = 7e-88
 Identities = 95/324 (29%), Positives = 138/324 (42%), Gaps = 28/324 (8%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           + +   L  + L  N L+G +P   +  +  +LE   +   +++G IP  +SN TN   +
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIP-QELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL- 119
           +L  N+L G IP  + +L+ L  L L +N   G+IP ++     L  LDL+ N  +G++ 
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 120 -------------------PACFSNLTSLRIVSLGSNKLT---SVPLTFWNLKDILNLNF 157
                                   N    +      N L            L      N 
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 158 SSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS 217
           +S            N   ++ +D S N  SG IP EIG +  L  L LG+N + GSIPD 
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFE 277
            GDL  L  L+LS+N L G IP ++  L+ L  ++LS N L G IP  G F  F    F 
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735

Query: 278 GNELLCGSPNLQVPPCKTSIHHTS 301
            N  LCG P   +P C  S     
Sbjct: 736 NNPGLCGYP---LPRCDPSNADGY 756

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  244 bits (626), Expect = 5e-73
 Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 8/276 (2%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
              KSL  + L+ N   G +P    G    +L    +   +  G +P    + +    + 
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACD-TLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 62  LGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDICHL-AELYRLDLDGNKLSGSL 119
           L  N  +G +P+ TL K++ L+ L L  N+  G +P+ + +L A L  LDL  N  SG +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 120 PA--CFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
               C +   +L+ + L +N  T  +P T  N  ++++L+ S N+L+  +P  +G+L  L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 177 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG 236
             +   +N   G IP E+  +K LE L L +N L G IP    +  +L +++LSNN L+G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 237 AIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
            IP  + +L  L  L LS N   G IP     G+  
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCR 538

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  242 bits (621), Expect = 3e-72
 Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 13/279 (4%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +S C +L  + +S+N     +P   +G+ S +L+   +    +SG     IS  T   ++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP--FLGDCS-ALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICH-LAELYRLDLDGNKLSGSL 119
           N+  N+  G IP     L+ LQ L L +NK  G IPD +      L  LDL GN   G++
Sbjct: 253 NISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 120 PACFSNLTSLRIVSLGSNKLT-SVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKV-L 176
           P  F + + L  ++L SN  +  +P+ T   ++ +  L+ S N  +  LP  + NL   L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 177 IGIDFSMNNFSGVIPTEIGG--LKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
           + +D S NNFSG I   +       L+ L+L  N   G IP +  +   L  L+LS N L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 235 SGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSA 273
           SG IP+SL  LS L +L L  N LEGEIP+         
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKT 467

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  237 bits (608), Expect = 3e-70
 Identities = 88/331 (26%), Positives = 142/331 (42%), Gaps = 11/331 (3%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEE-ISNLTNSTIV 60
             C +LT + LS N   G +P    G+ S  LE   + + N SG +P + +  +    ++
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPP-FFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 61  NLGGNKLNGSIPITLSKL-QKLQGLGLEDNKLEGSIPDDICH--LAELYRLDLDGNKLSG 117
           +L  N+ +G +P +L+ L   L  L L  N   G I  ++C      L  L L  N  +G
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 118 SLPACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
            +P   SN + L  + L  N L+ ++P +  +L  + +L    N L   +P E+  +K L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 177 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG 236
             +    N+ +G IP+ +    NL ++ L  NRL G IP   G L +L  L LSNN+ SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 237 AIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTS 296
            IPA L     L  L+L+ N   G IP   +    S +       + G   + +      
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGK--IAANFIAGKRYVYIKNDGMK 584

Query: 297 IHHTSWKNSLLLRIVLPLSTTFMIVVILLIL 327
                  N L  + +       +       +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  225 bits (575), Expect = 1e-65
 Identities = 82/278 (29%), Positives = 127/278 (45%), Gaps = 15/278 (5%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
              C  L  + +S N + G +    V     +LE   + + N S GIP  + + +    +
Sbjct: 174 SDGCGELKHLAISGNKISGDVD---VSRCV-NLEFLDVSSNNFSTGIP-FLGDCSALQHL 228

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           ++ GNKL+G     +S   +L+ L +  N+  G IP        L  L L  NK +G +P
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIP 286

Query: 121 AC-FSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLE-IGNLKVLI 177
                   +L  + L  N    +VP  F +   + +L  SSN  +  LP++ +  ++ L 
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 178 GIDFSMNNFSGVIPTEIGGLK-NLEYLFLGYNRLQGSIPDSFGD--LISLKFLNLSNNNL 234
            +D S N FSG +P  +  L  +L  L L  N   G I  +       +L+ L L NN  
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 235 SGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
           +G IP +L   S L +L+LSFN L G IP   S G+ S
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPS--SLGSLS 442

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  224 bits (573), Expect = 2e-65
 Identities = 82/280 (29%), Positives = 125/280 (44%), Gaps = 13/280 (4%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI---SNLTNST 58
            +C  L  + +S+N LD     +    L+ SLE   +   +ISG                
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLN-SLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 59  IVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS 118
            + + GNK++G + +  S+   L+ L +  N     IP  +   + L  LD+ GNKLSG 
Sbjct: 182 HLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 238

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEI-GNLKVLI 177
                S  T L+++++ SN+    P+    LK +  L+ + N  T  +P  + G    L 
Sbjct: 239 FSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP-DSFGDLISLKFLNLSNNNLSG 236
           G+D S N+F G +P   G    LE L L  N   G +P D+   +  LK L+LS N  SG
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 237 AIPASLEKLSY-LENLNLSFNKLEGEIPRGGSFGNFSAES 275
            +P SL  LS  L  L+LS N   G I    +       +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNT 395

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  217 bits (555), Expect = 7e-63
 Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 16/281 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILP-KTSVGNLSHSLEDFRMYNCNISGGIP-EEISNLTNSTI 59
               SLT + LS N L G +   TS+G+ S  L+   + +  +           L +  +
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155

Query: 60  VNLGGNKLNGSIPITL---SKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS 116
           ++L  N ++G+  +         +L+ L +  NK+ G +   +     L  LD+  N  S
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 117 GSLPACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKV 175
             +P    + ++L+ + +  NKL+           ++  LN SSN    P+P     LK 
Sbjct: 214 TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270

Query: 176 LIGIDFSMNNFSGVIPTEIGG-LKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
           L  +  + N F+G IP  + G    L  L L  N   G++P  FG    L+ L LS+NN 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 235 SGAIPA-SLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAE 274
           SG +P  +L K+  L+ L+LSFN+  GE+P   S  N SA 
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPE--SLTNLSAS 369

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  179 bits (457), Expect = 3e-49
 Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 13/227 (5%)

Query: 44  SGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDD--ICH 101
              +   + +LT    + L  + +NGS+         L  L L  N L G +     +  
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124

Query: 102 LAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLT-SVPLTFW---NLKDILNLN 156
            + L  L++  N L           L SL ++ L +N ++ +  + +       ++ +L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 157 FSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 216
            S N ++  +   +     L  +D S NNFS  IP  +G    L++L +  N+L G    
Sbjct: 185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

Query: 217 SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
           +      LK LN+S+N   G IP     L  L+ L+L+ NK  GEIP
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (421), Expect = 2e-44
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 14/216 (6%)

Query: 58  TIVNLGGNKLN---GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNK 114
           T ++L    LN    ++  +L  L  L+ L L ++ + GS+       A L  LDL  N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 115 LSGSLPA--CFSNLTSLRIVSLGSNKLT-SVPLT-FWNLKDILNLNFSSNFLTSPLPLEI 170
           LSG +       + + L+ +++ SN L     ++    L  +  L+ S+N ++    +  
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 171 ---GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFL 227
                   L  +  S N  SG +   +    NLE+L +  N     IP   GD  +L+ L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 228

Query: 228 NLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
           ++S N LSG    ++   + L+ LN+S N+  G IP
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (328), Expect = 3e-32
 Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 14/182 (7%)

Query: 100 CHLAELYRLDLDGNKLS---GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLN 156
           C   ++  +DL    L+    ++ +   +LT L  + L ++ +      F     + +L+
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 157 FSSNFLTSPLP--LEIGNLKVLIGIDFSMNNFSGVIPTEIG-GLKNLEYLFLGYNRLQGS 213
            S N L+ P+     +G+   L  ++ S N          G  L +LE L L  N + G+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 214 IPDSF---GDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
               +        LK L +S N +SG +  S  +   LE L++S N     IP     G+
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP---FLGD 221

Query: 271 FS 272
            S
Sbjct: 222 CS 223

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (501), Expect = 4e-56
 Identities = 62/315 (19%), Positives = 111/315 (35%), Gaps = 46/315 (14%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKT------------------SVGNLSHSLEDFRMYNCN 42
           +     L   Y+ N+P                             NL   L D  +YNC 
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCP 260

Query: 43  ISGGIPEEISNLTNSTIVNLGGNKL--------NGSIPITLSKLQKLQGLGLEDNKL-EG 93
               +P  +  L    ++N+  N+         +          +K+Q + +  N L   
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFW-NLKDI 152
            +   +  + +L  L+   N+L G LPA F +   L  ++L  N++T +P  F    + +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 153 LNLNFSSNFLTS-PLPLEIGNLKVLIGIDFSMNNFSGV-------IPTEIGGLKNLEYLF 204
            NL+F+ N L   P   +  ++ V+  IDFS N    V       +        N+  + 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 205 LGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG-------AIPASLEKLSYLENLNLSFNK 257
           L  N++     + F     L  +NL  N L+            + +    L +++L FNK
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 258 LEGEIPRGGSFGNFS 272
           L   +          
Sbjct: 500 LTK-LSDDFRATTLP 513

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  185 bits (472), Expect = 5e-52
 Identities = 53/286 (18%), Positives = 96/286 (33%), Gaps = 32/286 (11%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
              K L ++    N L+G LP  + G+    L    +    I+               ++
Sbjct: 327 QKMKKLGMLECLYNQLEGKLP--AFGSEI-KLASLNLAYNQITEIPANFCGFTEQVENLS 383

Query: 62  LGGNKLNGSIPITLS--KLQKLQGLGLEDNKLEG-------SIPDDICHLAELYRLDLDG 112
              NKL   IP       +  +  +    N++          +         +  ++L  
Sbjct: 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 113 NKLSGSLPACFSNLTSLRIVSLGSNKLTSVP--------LTFWNLKDILNLNFSSNFLTS 164
           N++S      FS  + L  ++L  N LT +P          F N   + +++   N LT 
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 165 -PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLG------YNRLQGSIPDS 217
                    L  L+GID S N+FS   PT+      L+   +        NR     P+ 
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
                SL  L + +N++   +   +     +  L++  N       
Sbjct: 562 ITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (451), Expect = 4e-49
 Identities = 44/282 (15%), Positives = 98/282 (34%), Gaps = 31/282 (10%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPE--EISNLTNSTI 59
            +   L  + L+ N +  I    +    +  +E+    +  +   IP   +  +++  + 
Sbjct: 350 GSEIKLASLNLAYNQITEIPA--NFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSA 406

Query: 60  VNLGGNKLNG-------SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG 112
           ++   N++          +  T  K   +  + L +N++     +     + L  ++L G
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 113 NKLSG-------SLPACFSNLTSLRIVSLGSNKLTSVP--LTFWNLKDILNLNFSSNFLT 163
           N L+             F N   L  + L  NKLT +        L  ++ ++ S N  +
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

Query: 164 SPLPLEIGNLKVLIGI------DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS 217
              P +  N   L G       D   N      P  I    +L  L +G N ++  + + 
Sbjct: 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK 584

Query: 218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
                ++  L++ +N       + +          L ++K +
Sbjct: 585 I--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  171 bits (436), Expect = 5e-47
 Identities = 47/287 (16%), Positives = 100/287 (34%), Gaps = 25/287 (8%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGG----IPEEISNLTN 56
           +++   +T + L      G +P  ++G L+  LE   + +           P+ IS   +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPD-AIGQLTE-LEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 57  STIVNLGGNKLNGSIPITLSKLQ--KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNK 114
                        +      +     L    +  +  + SI        +  ++    N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 115 LSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLK 174
           ++  +      LT LR   +G++   +  +     +   N N           L+  NLK
Sbjct: 195 IT-FVSKAVMRLTKLRQFYMGNSPFVAENI----CEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL--------QGSIPDSFGDLISLKF 226
            L  ++         +PT +  L  ++ + +  NR                      ++ 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 227 LNLSNNNL-SGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
           + +  NNL +  +  SL+K+  L  L   +N+LEG++P   +FG+  
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEI 353

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  169 bits (431), Expect = 2e-46
 Identities = 43/312 (13%), Positives = 97/312 (31%), Gaps = 36/312 (11%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +S   S                          L    + +      I +        T +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEG-------------------SIPDDICH 101
               N +   +   + +L KL+   + ++                       +      +
Sbjct: 189 GQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247

Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP---------LTFWNLKDI 152
           L +L  +++        LP     L  ++++++  N+  S                 + I
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 153 LNLNFSSNFLTS-PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 211
             +    N L + P+   +  +K L  ++   N   G +P   G    L  L L YN++ 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366

Query: 212 GSIPDSFGDLISLKFLNLSNNNLSGAIPASLE--KLSYLENLNLSFNKLEGEIPRGGSFG 269
               +  G    ++ L+ ++N L   IP   +   +S +  ++ S+N++        +F 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFD 423

Query: 270 NFSAESFEGNEL 281
                 F+G  +
Sbjct: 424 PLDPTPFKGINV 435

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  143 bits (362), Expect = 6e-37
 Identities = 37/259 (14%), Positives = 78/259 (30%), Gaps = 31/259 (11%)

Query: 40  NCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI 99
           N +  G   +  +N   +  +++ G        ++L+   ++ GL LE     G +PD I
Sbjct: 46  NWSQQGFGTQPGANWNFNKELDMWGA----QPGVSLNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 100 CHLAELYRLDLDGNKLSG----SLPACFSNLTSLRIVSLGSNKLTSVP---LTFWNLKDI 152
             L EL  L L  +          P   S   S                      +  D+
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
           +    +S+     +            I    NN +  +   +  L  L   ++G +    
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVA 220

Query: 213 -------------------SIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNL 253
                              +    + +L  L  + + N      +P  L+ L  ++ +N+
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 254 SFNKLEGEIPRGGSFGNFS 272
           + N+          +   +
Sbjct: 281 ACNRGISGEQLKDDWQALA 299

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 4e-18
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 11/149 (7%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTN---- 56
             N   LT I L  N L  +        L   L    +   + S   P +  N +     
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLP-YLVGIDLSYNSFS-KFPTQPLNSSTLKGF 541

Query: 57  --STIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNK 114
                 +  GN+     P  ++    L  L +  N +   + + I     +  LD+  N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNP 598

Query: 115 LSGSLPACFSNLTSLRIVSLGSNKLTSVP 143
                 +         +  L  +K   + 
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  181 bits (462), Expect = 2e-50
 Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 12/274 (4%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
            ++T++ L++N L  + P  +    S  L    +    IS   PE    L    ++NL  
Sbjct: 25  TNITVLNLTHNQLRRL-PAANFTRYSQ-LTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
           N+L+     T +    L  L L  N ++    +       L  LDL  N LS +      
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 125 NLTSLRIVSLGSNKLTSVP---LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
            L +L+ + L +NK+ ++    L  +    +  L  SSN +    P     +  L G+  
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 182 SMNNFSGVIPTEIG---GLKNLEYLFLGYNRLQGSIPDSFGDL--ISLKFLNLSNNNLSG 236
           +       +  ++       ++  L L  ++L  +   +F  L   +L  L+LS NNL+ 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 237 AIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
               S   L  LE   L +N ++       S   
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFS--HSLHG 294

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (457), Expect = 1e-49
 Identities = 63/306 (20%), Positives = 110/306 (35%), Gaps = 20/306 (6%)

Query: 1   MSNCKSLTLIYLSNNPL--DGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNST 58
            +   +L  + LSN+      +  +T V      L    +    IS    +  S L +  
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 59  IVNLGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG 117
           +++LG N++   +       L+ +  + L  NK      +    +  L RL L    L  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 118 --SLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTS--------PL 166
             S P+ F  L +L I+ L +N + ++       L+ +  L+   N L            
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKF 226
              +  L  L  ++   N F  +       L  L+ + LG N L       F + +SLK 
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 227 LNLSNNNLSGAIPASLEK-LSYLENLNLSFNKLEGEIPRGGSFGNFSAES-----FEGNE 280
           LNL  N ++             L  L++ FN  +        F N+  E+        + 
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

Query: 281 LLCGSP 286
            LC +P
Sbjct: 649 YLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (437), Expect = 7e-47
 Identities = 64/291 (21%), Positives = 108/291 (37%), Gaps = 19/291 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           + C +LT ++L +N +  I           +L    + +  +S         L N   + 
Sbjct: 94  AFCTNLTELHLMSNSIQKI-KNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 62  LGGNKLNGSIPITLS--KLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           L  NK+       L       L+ L L  N+++   P     +  L+ L L+  +L  SL
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 120 PA---CFSNLTSLRIVSLGSNKLTSV-PLTFWNLKD--ILNLNFSSNFLTSPLPLEIGNL 173
                     TS+R +SL +++L++    TF  LK   +  L+ S N L          L
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 174 KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN---------RLQGSIPDSFGDLISL 224
             L       NN   +    + GL N+ YL L  +          L      SF  L  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 225 KFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAES 275
           + LN+ +N++ G        L  L+ L+LS +          +F + +   
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  171 bits (436), Expect = 1e-46
 Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 15/275 (5%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
           S  +   S+  L  +       +L  ++    + +  +        +  +  T +++G N
Sbjct: 5   SHEVADCSHLKLTQVPD-----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSN 125
            ++   P    KL  L+ L L+ N+L             L  L L  N +       F  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 126 LTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTS--PLPLEIGNLKVLIGIDFS 182
             +L  + L  N L+S  L T   L+++  L  S+N + +     L+I     L  ++ S
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD---LISLKFLNLSNNNLSGAIP 239
            N      P     +  L  LFL   +L  S+ +         S++ L+LSN+ LS    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 240 ASLEKLSY--LENLNLSFNKLEGEIPRGGSFGNFS 272
            +   L +  L  L+LS+N L        SF    
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLP 272

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  165 bits (420), Expect = 2e-44
 Identities = 65/285 (22%), Positives = 104/285 (36%), Gaps = 11/285 (3%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +    LT + +  N +  + P+     L   L+   + +  +S    +  +  TN T ++
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPE-LCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L  N +         K + L  L L  N L  +       L  L  L L  NK+      
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 122 CFS--NLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLEIG---NLKV 175
                  +SL+ + L SN++    P  F  +  +  L  ++  L   L  ++        
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 176 LIGIDFSMNNFSGVIPTEIGGLK--NLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNN 233
           +  +  S +  S    T   GLK  NL  L L YN L     DSF  L  L++  L  NN
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 234 LSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEG 278
           +      SL  L  +  LNL  +  +  I    S       SF+ 
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (287), Expect = 4e-27
 Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 127 TSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF 186
            S  +      KLT VP       +I  LN + N L             L  +D   N  
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 187 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS 246
           S + P     L  L+ L L +N L      +F    +L  L+L +N++         K  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 247 YLENLNLSFNKLEGEIPRGGSFGNFS 272
            L  L+LS N L       G+     
Sbjct: 122 NLITLDLSHNGLSSTKL--GTQVQLE 145

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  168 bits (428), Expect = 3e-45
 Identities = 57/317 (17%), Positives = 103/317 (32%), Gaps = 38/317 (11%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNS-TIV 60
                L L+   +N +  +    + G     L D ++    I   IPE+    T+    +
Sbjct: 570 QKMVKLGLLDCVHNKVRHL---EAFGTNV-KLTDLKLDYNQIEE-IPEDFCAFTDQVEGL 624

Query: 61  NLGGNKLNGSIP--ITLSKLQKLQGLGLEDNKLEGSIPD-----DICHLAELYRLDLDGN 113
               NKL   IP       +  +  +    NK+     +     D         + L  N
Sbjct: 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 114 KLSGSLPACFSNLTSLRIVSLGSNKLTSVP--------LTFWNLKDILNLNFSSNFLTS- 164
           ++       F+  + +  + L +N +TS+P          + N   +  ++   N LTS 
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 165 PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL------FLGYNRLQGSIPDSF 218
                   L  L  +D S N FS   PT+      L+            NR+    P   
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 219 GDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAE---- 274
               SL  L + +N++   +   L     L  L+++ N     I          A     
Sbjct: 803 TTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVL 858

Query: 275 SFEGNELLCGSPNLQVP 291
            ++  + + G   L + 
Sbjct: 859 LYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  154 bits (391), Expect = 2e-40
 Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 38/280 (13%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           + +   L  + ++ N         +                     + ++        I 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWT-----------------RLADDEDTGPKIQIF 553

Query: 61  NLGGNKLNG-SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
            +G N L       +L K+ KL  L    NK+     +      +L  L LD N++    
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 120 PACFSNLTSLRIVSLGSNKLTSVP--LTFWNLKDILNLNFSSNFLTS-----PLPLEIGN 172
               +    +  +    NKL  +P      ++  + +++FS N + S        ++   
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 173 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ-------GSIPDSFGDLISLK 225
                 +  S N               +  + L  N +             ++ +   L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 226 FLNLSNNNLSGAIPASLE--KLSYLENLNLSFNKLEGEIP 263
            ++L  N L+  +        L YL N+++S+N      P
Sbjct: 732 TIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFP 769

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (383), Expect = 2e-39
 Identities = 48/282 (17%), Positives = 90/282 (31%), Gaps = 23/282 (8%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSH-SLEDFRMYNC-NISGGIPEEISNLTNSTI 59
              + L L  L  + ++       +   S  SL+D ++ N  N    I + I  LT   I
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           +    +           +         +  K   +      +L +L  ++L        L
Sbjct: 453 IYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 120 PACFSNLTSLRIVSLGSNKLTSV----------PLTFWNLKDILNLNFSSNFLTS-PLPL 168
           P    +L  L+ +++  N+  S                    I       N L   P   
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 169 EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN 228
            +  +  L  +D   N          G    L  L L YN+++    D       ++ L 
Sbjct: 568 SLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 229 LSNNNLSGAIP--ASLEKLSYLENLNLSFNKLEGEIPRGGSF 268
            S+N L   IP   + + +  + +++ S+NK+  E       
Sbjct: 626 FSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  149 bits (378), Expect = 1e-38
 Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 29/287 (10%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           + N   +T + L+     G +P  ++G L+  L+       + +              + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPD-AIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 61  NLGGNKLNGSI-PITLSKLQKLQGLGLEDNKLE-----GSIPDDICHLAELYRLDLDGNK 114
               +++      + L   Q+L    L  + +        I  D     +  ++    N+
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 115 LSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLK 174
           ++  +      LT L+I+   ++  T   +      D  + N           L   NLK
Sbjct: 437 IT-FISKAIQRLTKLQIIYFANSPFTYDNIAV----DWEDANSDYAKQYENEELSWSNLK 491

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG---------SIPDSFGDLISLK 225
            L  ++         +P  +  L  L+ L +  NR             + D       ++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 226 FLNLSNNNLSGAIPAS--LEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
              +  NNL    PAS  L+K+  L  L+   NK+   +    +FG 
Sbjct: 552 IFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE---AFGT 593

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  134 bits (338), Expect = 1e-33
 Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 35  DFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGS 94
           +F             ++ N    T ++L G    G +P  + +L +L+ L    +    S
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 95  IPDDICHLAELYRLDLDGNKLSGSLPACF-SNLTSLRIVSLGSNKLTSVP-------LTF 146
                         +   +++       F      L +  L  + +   P        + 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 147 WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLG 206
            +LKD   +   +N +T  +   I  L  L  I F+ + F+           + E     
Sbjct: 423 ISLKD-TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSD 475

Query: 207 YNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG 266
           Y +   +   S+ +L  L  + L N      +P  L  L  L++LN++ N+         
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 267 SFGNFSAESFEGNEL 281
            +   + +   G ++
Sbjct: 536 DWTRLADDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.5 bits (196), Expect = 9e-16
 Identities = 30/264 (11%), Positives = 72/264 (27%), Gaps = 38/264 (14%)

Query: 30  SHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDN 89
           ++ +  +  Y+ +       E  ++   +              +  +KL K   + ++  
Sbjct: 215 TYQVVAYTTYSQSGIKRSELETQSVRGESFT------------VIDNKLTKDANVPIQLK 262

Query: 90  KLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNL 149
           +    I D     A    LD    +          +  +                  WN 
Sbjct: 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLN------------------WNF 304

Query: 150 KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 209
                 N   +       +++ N   + G+  +     G +P  IG L  L+ L  G + 
Sbjct: 305 ------NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS 358

Query: 210 LQGSIPDSFGDLISLKFLNLSNNNLSGAI-PASLEKLSYLENLNLSFNKLEGEIPRGGSF 268
              S      + ++        + +        L+    L   +L  + +    P     
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPI 417

Query: 269 GNFSAESFEGNELLCGSPNLQVPP 292
              S  S +  ++   +  +    
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFIS 441

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 12/122 (9%)

Query: 1   MSNCKSLTLIYLSNNPLDGI------LPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNL 54
            +    L+ + +S N             +     + H  +        I    P  I+  
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD---AEGNRILRQWPTGITTC 805

Query: 55  TNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNK 114
            +   + +G N +   +   L    +L  L + DN         +C   E     L  +K
Sbjct: 806 PSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

Query: 115 LS 116
             
Sbjct: 863 TQ 864

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  162 bits (412), Expect = 6e-44
 Identities = 53/267 (19%), Positives = 97/267 (36%), Gaps = 15/267 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +   +++   L +  ++ +   +      H      + NC            L   ++  
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQH----LELVNCKFGQ-----FPTLKLKSLKR 329

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKL--EGSIPDDICHLAELYRLDLDGNKLSGSL 119
           L      G    +   L  L+ L L  N L  +G           L  LDL  N +   +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 120 PACFSNLTSLRIVSLGSNKLTSV--PLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
            + F  L  L  +    + L  +     F +L++++ L+ S              L  L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 178 GIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG 236
            +  + N+F      +I   L+NL +L L   +L+   P +F  L SL+ LN+S+NN   
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 237 AIPASLEKLSYLENLNLSFNKLEGEIP 263
                 + L+ L+ L+ S N +     
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  148 bits (376), Expect = 6e-39
 Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 15/259 (5%)

Query: 28  NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE 87
           NL  S ++  +    +         +     +++L   ++          L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 88  DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL--T 145
            N ++         L+ L +L      L+        +L +L+ +++  N + S  L   
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 146 FWNLKDILNLNFSSNFLTSPLPLEIGNLK----VLIGIDFSMNNFSGVIPTEIGGLKNLE 201
           F NL ++ +L+ SSN + S    ++  L     + + +D S+N  + + P     +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 202 YLFLGYNRLQGSIP-DSFGDLISLKFLNLSNN------NLSGAIPASLEKLSYLENLNLS 254
            L L  N    ++       L  L+   L         NL     ++LE L  L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 255 FNKLEGEIPRG-GSFGNFS 272
              L+  +      F   +
Sbjct: 264 LAYLDYYLDDIIDLFNCLT 282

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  148 bits (376), Expect = 7e-39
 Identities = 52/268 (19%), Positives = 99/268 (36%), Gaps = 9/268 (3%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
              KSL  +  ++N       +  + +L     D      +  G   +     T+   ++
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL--DLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLP 120
           L  N +   +      L++L+ L  + + L+      +   L  L  LD+       +  
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 121 ACFSNLTSLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
             F+ L+SL ++ +  N      +P  F  L+++  L+ S   L    P    +L  L  
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI-SLKFLNLSNNNLSGA 237
           ++ S NNF  +       L +L+ L    N +  S          SL FLNL+ N+ +  
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 238 IPAS--LEKLSYLENLNLSFNKLEGEIP 263
                 L+ +     L +   ++E   P
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (362), Expect = 4e-37
 Identities = 67/326 (20%), Positives = 108/326 (33%), Gaps = 44/326 (13%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
           S   + LS NPL  +    S  +    L+   +  C I         +L++ + + L GN
Sbjct: 29  STKNLDLSFNPLRHLGS-YSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKL-SGSLPACFS 124
            +        S L  LQ L   +  L       I HL  L  L++  N + S  LP  FS
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 125 NLTSLRIVSLGSNKLTSV-PLTFWNLK----DILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           NLT+L  + L SNK+ S+       L       L+L+ S N +    P     ++ L  +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKL 205

Query: 180 DFSMNNFSGVIPTEI----------------------------GGLKNLEYLFLGYNRLQ 211
               N  S  +                                  L+ L  L +   RL 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 212 ------GSIPDSFGDLISLKFLNLSNNNLSGAIPAS-LEKLSYLENLNLSFNKLEGEIPR 264
                   I D F  L ++   +L +  +      S      +LE +N  F +      +
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 265 GGSFGNFSAESFEGNELLCGSPNLQV 290
                 F++            P+L+ 
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEF 351

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (310), Expect = 3e-30
 Identities = 53/277 (19%), Positives = 98/277 (35%), Gaps = 26/277 (9%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           + + K+L  + +++N +          NL+ +LE   + +  I      ++  L    ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 61  ----NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICH-LAELYRLDLDGNKL 115
               +L  N +N   P    ++ +L  L L +N    ++       LA L    L   + 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 116 SGSL------PACFSNLTSLRIVSLGSNKLT----SVPLTFWNLKDILNLNFSSNFLTSP 165
                      +    L +L I       L      +   F  L ++ + +  S  +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 166 LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLK 225
                        ++     F      ++  LK L      +   +G    S  DL SL+
Sbjct: 298 KDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLE 350

Query: 226 FLNLSNNNLS--GAIPASLEKLSYLENLNLSFNKLEG 260
           FL+LS N LS  G    S    + L+ L+LSFN +  
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (280), Expect = 2e-26
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 4/151 (2%)

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
           C   + ++            +P          NL+ S N L         +   L  +D 
Sbjct: 3   CVEVVPNI-TYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S      +       L +L  L L  N +Q     +F  L SL+ L     NL+      
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 242 LEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
           +  L  L+ LN++ N ++        F N +
Sbjct: 120 IGHLKTLKELNVAHNLIQS-FKLPEYFSNLT 149

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  155 bits (395), Expect = 2e-43
 Identities = 47/268 (17%), Positives = 100/268 (37%), Gaps = 18/268 (6%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSH-SLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           N  +  +   +   L        + + +        + +  +    P++   L++   + 
Sbjct: 54  NSNNPQIETRTGRAL-KATAD-LLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMT 110

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           +    L   +P T+ +   L+ L L  N L  ++P  I  L  L  L +        LP 
Sbjct: 111 IDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 122 CFSN---------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGN 172
             ++         L +L+ + L    + S+P +  NL+++ +L   ++ L++ L   I +
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227

Query: 173 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL-GYNRLQGSIPDSFGDLISLKFLNLSN 231
           L  L  +D          P   GG   L+ L L   + L  ++P     L  L+ L+L  
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRG 286

Query: 232 NNLSGAIPASLEKLSYLENLNLSFNKLE 259
                 +P+ + +L     + +  +   
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  148 bits (375), Expect = 1e-40
 Identities = 60/283 (21%), Positives = 99/283 (34%), Gaps = 27/283 (9%)

Query: 1   MSNCKSLT--------LIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEIS 52
                +L              N   +         N ++   + R           + + 
Sbjct: 19  FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR--TGRALKATADLLE 76

Query: 53  NLT--NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDL 110
           + T      + L    L    P    +L  LQ + ++   L   +PD +   A L  L L
Sbjct: 77  DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 111 DGNKLSGSLPACFSNLTSLRIVSL-GSNKLTSVP---------LTFWNLKDILNLNFSSN 160
             N L  +LPA  ++L  LR +S+    +LT +P              L ++ +L     
Sbjct: 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 161 FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
            + S LP  I NL+ L  +    +  S  +   I  L  LE L L       + P  FG 
Sbjct: 194 GIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 221 LISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
              LK L L + +    +P  + +L+ LE L+L        +P
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (356), Expect = 4e-38
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 20/251 (7%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
                + L + PL    P      LSH L+   +    +   +P+ +        + L  
Sbjct: 81  PGRVALELRSVPLP-QFPD-QAFRLSH-LQHMTIDAAGLME-LPDTMQQFAGLETLTLAR 136

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC---------HLAELYRLDLDGNKL 115
           N L  ++P +++ L +L+ L +        +P+ +           L  L  L L+   +
Sbjct: 137 NPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 116 SGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSS-NFLTSPLPLEIGNLK 174
             SLPA  +NL +L+ + + ++ L+++     +L  +  L+      L +  P   G   
Sbjct: 196 R-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRA 253

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNN-- 232
            L  +     +    +P +I  L  LE L L        +P     L +   + +  +  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 233 -NLSGAIPASL 242
             L    P + 
Sbjct: 314 AQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  139 bits (352), Expect = 2e-37
 Identities = 49/251 (19%), Positives = 84/251 (33%), Gaps = 24/251 (9%)

Query: 32  SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKL 91
             E+             + +S        +                    Q        L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRAL 68

Query: 92  EGSIPDDI--CHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNL 149
           + +  D +          L+L    L    P     L+ L+ +++ +  L  +P T    
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQF 126

Query: 150 KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG---------GLKNL 200
             +  L  + N L + LP  I +L  L  +          +P  +          GL NL
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 201 EYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLS-FNKLE 259
           + L L +  ++ S+P S  +L +LK L + N+ LS A+  ++  L  LE L+L     L 
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 260 GEIPRGGSFGN 270
              P    FG 
Sbjct: 244 -NYPP--IFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 35/209 (16%), Positives = 60/209 (28%), Gaps = 37/209 (17%)

Query: 93  GSIPDDICHLAELYRLDLDGNKLSGSLPACFSNL--------------------TSLRIV 132
           GS      H +    L   G+          S                       + +I 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 133 SLGSNKLTSVPLTFWNLKDI--LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI 190
           +     L +      +      + L   S  L    P +   L  L  +          +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 191 PTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL-------- 242
           P  +     LE L L  N L+ ++P S   L  L+ L++        +P  L        
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 243 -EKLSYLENLNLSFNKLEGEIPRGGSFGN 270
            + L  L++L L +  +   +P   S  N
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPA--SIAN 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (400), Expect = 4e-42
 Identities = 64/279 (22%), Positives = 96/279 (34%), Gaps = 11/279 (3%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S  +SL L    +   + I P    G    S+E   +                +    ++
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL-P 120
           L    L+  +P  L  L  L+ L L  NK E        +   L  L + GN     L  
Sbjct: 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPL---TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
            C  NL +LR + L  + + +         NL  + +LN S N   S           L 
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 178 GIDFSMNNFSGVIP-TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG 236
            +D +          +    L  L+ L L ++ L  S    F  L +L+ LNL  N+   
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 237 AI---PASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
                  SL+ L  LE L LSF  L        +F +  
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSLK 500

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (393), Expect = 3e-41
 Identities = 57/278 (20%), Positives = 100/278 (35%), Gaps = 9/278 (3%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
              + L ++   NN +  +  K  + +L  +       N N   GI     +      +N
Sbjct: 150 FPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 62  LGGNKLNGSIPITLS--KLQKLQGLGLEDNKLEGSIPDDICHLAELY--RLDLDGNKLSG 117
            GG +    I   L    +Q L     ED   E   P     L E+    ++L  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 118 SLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
                F   + L+ + L +  L+ +P     L  +  L  S+N   +   +   N   L 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 178 GIDFSMNNFSGVIPTE-IGGLKNLEYLFLGYNRLQGS--IPDSFGDLISLKFLNLSNNNL 234
            +    N     + T  +  L+NL  L L ++ ++ S        +L  L+ LNLS N  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 235 SGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
                 + ++   LE L+L+F +L+        F N  
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKV-KDAQSPFQNLH 425

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (389), Expect = 1e-40
 Identities = 61/268 (22%), Positives = 107/268 (39%), Gaps = 11/268 (4%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEE-ISNLTNSTI 59
           +    +L  + LS N  + +  + S  N   SL    +        +    + NL N   
Sbjct: 297 LVGLSTLKKLVLSANKFENL-CQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 60  VNLGGNKLNGS--IPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG 117
           ++L  + +  S    + L  L  LQ L L  N+      +      +L  LDL   +L  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 118 SLP-ACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIG---N 172
               + F NL  L++++L  + L       F  L  + +LN   N        +      
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 173 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNN 232
           L  L  +  S  + S +       LK + ++ L +NRL  S  ++   L  + +LNL++N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 233 NLSGAIPASLEKLSYLENLNLSFNKLEG 260
           ++S  +P+ L  LS    +NL  N L+ 
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (388), Expect = 1e-40
 Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 11/277 (3%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S   +LT + L+   +  I  + +  +    L+   +    +       +S       + 
Sbjct: 54  SRLINLTFLDLTRCQIYWI-HEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
                ++    I L   + L+ L L  N +            +L  LD   N +      
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 122 CFSNLTSLRIVSL--GSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKV--LI 177
             S+L     +SL    N +  +    ++     +LNF        +   + N  +  L 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 178 GIDFSMNNFSGVIPTEIGGLK--NLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS 235
              F   +   + P    GL   ++E + L  +       ++F     L+ L+L+  +LS
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 236 GAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
             +P+ L  LS L+ L LS NK E       S  NF 
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQ--ISASNFP 325

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 3e-39
 Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 11/271 (4%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
            +   L  + L+ NPL  +  +T++     +L+        IS      + N      + 
Sbjct: 78  QSQHRLDTLVLTANPLIFM-AETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAEL--YRLDLDGNKLSGSL 119
           LG N ++          +KL+ L  ++N +     +D+  L +     L+L+GN ++  +
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GI 194

Query: 120 PACFSNLTSLRIVSLGSNKLTSVP---LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKV- 175
                +    + ++ G  +   V    L    ++ +    F         P     L   
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 176 -LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
            +  I+   + F  +          L+ L L    L   +P     L +LK L LS N  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 235 SGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
                 S      L +L++  N    E+  G
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 3e-39
 Identities = 61/293 (20%), Positives = 105/293 (35%), Gaps = 17/293 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
                L  + L+   L  +     +  LS +L+   +             SN  + T ++
Sbjct: 275 HCFSGLQELDLTATHLSELPS--GLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 62  LGGNKLNGSI-PITLSKLQKLQGLGLEDNKLEGS--IPDDICHLAELYRLDLDGNKLSGS 118
           + GN     +    L  L+ L+ L L  + +E S      + +L+ L  L+L  N+    
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVPL--TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
               F     L ++ L   +L        F NL  +  LN S + L          L  L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 177 IGIDFSMNNFSGVIPTEIG---GLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNN 233
             ++   N+F      +      L  LE L L +  L      +F  L  +  ++LS+N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 234 LSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAES---FEGNELLC 283
           L+ +   +L  L  +  LNL+ N +   +P        S +       N L C
Sbjct: 512 LTSSSIEALSHLKGIY-LNLASNHISIILP--SLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  136 bits (345), Expect = 9e-35
 Identities = 52/269 (19%), Positives = 90/269 (33%), Gaps = 13/269 (4%)

Query: 10  IYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNG 69
               N  L+ I P    G L +S E        +        S L N T ++L   ++  
Sbjct: 17  YNCENLGLNEI-P----GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 70  SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL 129
               T     +L  L L  N L       +     L  L      +S        N  +L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 130 RIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN-NFS 187
             + LGSN ++S+ L   +  + +  L+F +N +      ++ +L+    +  ++N N  
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 188 GVIPTEIGGLKNLEYLFLGYNRLQGSIPD--SFGDLISLKFLNLSNNNLSGAIPASLEKL 245
             I          + L  G  +    I        + SL      + +     PA  E L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 246 S--YLENLNLSFNKLEGEIPRGGSFGNFS 272
               +E++NL  +          +F  FS
Sbjct: 252 CEMSVESINLQKHYFFNISS--NTFHCFS 278

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 4e-29
 Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 6/205 (2%)

Query: 86  LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PL 144
            E+  L   IP  +        L+   N L       FS L +L  + L   ++  +   
Sbjct: 19  CENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 145 TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLF 204
           TF +   +  L  ++N L       +   K L  + F     S +    +   K LE L+
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 205 LGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLEN--LNLSFNKLEGEI 262
           LG N +             LK L+  NN +       +  L    N  LNL+ N + G  
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 263 PRGGSFGNFSAESFEGNELLCGSPN 287
           P       F + +F G + L     
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (260), Expect = 7e-24
 Identities = 50/238 (21%), Positives = 83/238 (34%), Gaps = 10/238 (4%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
            N   L  + LS N    +  +         LE   +    +     +    NL    ++
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSI---PDDICHLAELYRLDLDGNKLSG 117
           NL  + L+ S       L  LQ L L+ N          + +  L  L  L L    LS 
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 118 SLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
                F++L  +  V L  N+LTS  +   +    + LN +SN ++  LP  +  L    
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR 550

Query: 178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS 235
            I+   N               LE+      +L+ +      +   L+ + LS+  LS
Sbjct: 551 TINLRQNPLDCTC--SNIYF--LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (372), Expect = 5e-40
 Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 18/258 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
            N  +L  +YL+ + +  I P   + NL+  +    +   +        +SN+T    + 
Sbjct: 107 QNLTNLRELYLNEDNISDISP---LANLT-KMYSLNLGANHNLS-DLSPLSNMTGLNYLT 161

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           +  +K+    PI  + L  L  L L  N++E   P  +  L  L+      N+++   P 
Sbjct: 162 VTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             +N+T L  + +G+NK+T +     NL  +  L   +N ++    +   +L  L  ++ 
Sbjct: 217 -VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAV--KDLTKLKMLNV 272

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
             N  S +    +  L  L  LFL  N+L     +  G L +L  L LS N+++   P  
Sbjct: 273 GSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 242 LEKLSYLENLNLSFNKLE 259
           L  LS +++ + +   ++
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (368), Expect = 1e-39
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 18/262 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           SN   LT +Y+  N +  I   +++ NL+ +L +  +   NIS      ++NLT    +N
Sbjct: 85  SNLVKLTNLYIGTNKITDI---SALQNLT-NLRELYLNEDNISD--ISPLANLTKMYSLN 138

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           LG N    S    LS +  L  L + ++K++   P  I +L +LY L L+ N++    P 
Sbjct: 139 LGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP- 194

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             ++LTSL   +   N++T +     N+  + +L   +N +T   PL   NL  L  ++ 
Sbjct: 195 -LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEI 250

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
             N  S +    +  L  L+ L +G N++  S      +L  L  L L+NN L       
Sbjct: 251 GTNQISDINA--VKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 242 LEKLSYLENLNLSFNKLEGEIP 263
           +  L+ L  L LS N +    P
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (363), Expect = 9e-39
 Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 20/264 (7%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +    +L  + L+ N +  I P   + NL   L +  +    I+      + NLTN   +
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP---LSNLV-KLTNLYIGTNKIT--DISALQNLTNLREL 115

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  + ++   P  L+ L K+  L L  N    S    + ++  L  L +  +K+    P
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
              +NLT L  +SL  N++  +     +L  +       N +T   P+   N+  L  + 
Sbjct: 173 --IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITPV--ANMTRLNSLK 227

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
              N  + + P  +  L  L +L +G N++     ++  DL  LK LN+ +N +S    +
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--IS 281

Query: 241 SLEKLSYLENLNLSFNKLEGEIPR 264
            L  LS L +L L+ N+L  E   
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 1e-38
 Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 20/259 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           ++        L    +  ++ +     L  S+    +    ++    + I  LTN   +N
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQ---EELE-SITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L GN++    P  LS L KL  L +  NK+  +    + +L  L  L L+ + +S   P 
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP- 127

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             +NLT +  ++LG+N   S      N+  +  L  + + +    P  I NL  L  +  
Sbjct: 128 -LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           + N    + P  +  L +L Y     N++    P    ++  L  L + NN ++   P  
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238

Query: 242 LEKLSYLENLNLSFNKLEG 260
           L  LS L  L +  N++  
Sbjct: 239 LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 1e-31
 Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 14/215 (6%)

Query: 49  EEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL 108
              ++L       L    +     +T  +L+ +  L +   K+  SI   I +L  L  L
Sbjct: 16  FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYL 71

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPL 168
           +L+GN+++   P   SNL  L  + +G+NK+T +     NL ++  L  + + ++   PL
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPL 128

Query: 169 EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN 228
              NL  +  ++   N+    +   +  +  L YL +  ++++   P    +L  L  L+
Sbjct: 129 --ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
           L+ N +    P  L  L+ L       N++    P
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 6e-15
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 12/138 (8%)

Query: 126 LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNN 185
             +L  +    N++        +L + +        +T  +  E   L+ +  +  +   
Sbjct: 2   AATLATLPAPINQIFPDA----DLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEK 55

Query: 186 FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKL 245
            + +    I  L NLEYL L  N++    P    +L+ L  L +  N ++    ++L+ L
Sbjct: 56  VASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNL 109

Query: 246 SYLENLNLSFNKLEGEIP 263
           + L  L L+ + +    P
Sbjct: 110 TNLRELYLNEDNISDISP 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (362), Expect = 8e-38
 Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 22/263 (8%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +S   SL  +   N   D       + NL+ +LE   + +  +S      ++ LTN   +
Sbjct: 152 LSGLTSLQQLSFGNQVTDLK----PLANLT-TLERLDISSNKVSD--ISVLAKLTNLESL 204

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
               N+++   P  L  L  L  L L  N+L+      +  L  L  LDL  N++S   P
Sbjct: 205 IATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
              S LT L  + LG+N+++++      L  + NL  + N L    P  I NLK L  + 
Sbjct: 261 --LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
              NN S + P  +  L  L+ LF   N++  S   S  +L ++ +L+  +N +S   P 
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP- 370

Query: 241 SLEKLSYLENLNLSFNKLEGEIP 263
            L  L+ +  L L+         
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 1e-35
 Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 22/262 (8%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +         L    +   + +T +  +       +     I     + +  L N T +N
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQTDLDQV----TTLQADRLGIK--SIDGVEYLNNLTQIN 74

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              N+L    P  L  L KL  + + +N++    P  + +L  L  L L  N+++   P 
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP- 129

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
              NLT+L  + L SN ++ +      L  +  L+F +          + NL  L  +D 
Sbjct: 130 -LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDI 184

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S N  S +    +  L NLE L    N++    P   G L +L  L+L+ N L      +
Sbjct: 185 SSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGT 238

Query: 242 LEKLSYLENLNLSFNKLEGEIP 263
           L  L+ L +L+L+ N++    P
Sbjct: 239 LASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  129 bits (326), Expect = 8e-33
 Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 19/258 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +   +L  +  +NN +  I P   +G L+ +L++  +    +       +++LTN T ++
Sbjct: 196 AKLTNLESLIATNNQISDITP---LGILT-NLDELSLNGNQLKD--IGTLASLTNLTDLD 249

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L  N+++   P  LS L KL  L L  N++    P  +  L  L  L+L+ N+L    P 
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             SNL +L  ++L  N ++ +     +L  +  L F +N ++    L   NL  +  +  
Sbjct: 305 -ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSA 360

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
             N  S + P  +  L  +  L L       +  +   ++     +      L    PA+
Sbjct: 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APAT 416

Query: 242 LEKLSYLENLNLSFNKLE 259
           +         ++++N   
Sbjct: 417 ISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (296), Expect = 9e-29
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)

Query: 49  EEISNLTNSTIVNLGGNKLNGSIPIT--------------------LSKLQKLQGLGLED 88
              + L       LG   +  ++  T                    +  L  L  +   +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 77

Query: 89  NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWN 148
           N+L    P  + +L +L  + ++ N+++   P   +NLT+L  ++L +N++T +     N
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PLKN 132

Query: 149 LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 208
           L ++  L  SSN ++    L    L  L  + F  N  + + P  +  L  LE L +  N
Sbjct: 133 LTNLNRLELSSNTISDISAL--SGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 187

Query: 209 RLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEG 260
           ++  S       L +L+ L  +NN +S   P  L  L+ L+ L+L+ N+L+ 
Sbjct: 188 KV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 36/213 (16%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S    LT + L  N +  I   + +  L+ +L +  +    +       ISNL N T + 
Sbjct: 262 SGLTKLTELKLGANQISNI---SPLAGLT-ALTNLELNENQLED--ISPISNLKNLTYLT 315

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L  N ++   P  +S L KLQ L   +NK+       + +L  +  L    N++S   P 
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 370

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL----- 176
             +NLT +  + L     T+ P+ +     I N   +        P  I +         
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA-PATISDGGSYTEPDI 428

Query: 177 ------------------IGIDFSMNNFSGVIP 191
                             + I      FSG + 
Sbjct: 429 TWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 170 IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNL 229
              L   +       N +  +      L  +  L      +     D    L +L  +N 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 230 SNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
           SNN L+   P  L+ L+ L ++ ++ N++    P
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  137 bits (348), Expect = 6e-37
 Identities = 45/281 (16%), Positives = 103/281 (36%), Gaps = 18/281 (6%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
           N     +  ++++ L   L   S+   + ++++  +    +S     +++  T   ++NL
Sbjct: 8   NGNRYKIEKVTDSSLKQALA--SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC 122
             N L  ++ +    L  L+ L L +N ++     ++     +  L    N +S    + 
Sbjct: 66  SSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSR 118

Query: 123 FSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTS-PLPLEIGNLKVLIGID 180
                ++    L +NK+T +  L       +  L+   N + +        +   L  ++
Sbjct: 119 GQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
              N     +  ++     L+ L L  N+L   +   F     + +++L NN L   I  
Sbjct: 176 LQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 241 SLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 281
           +L     LE+ +L  N       R     N   ++     +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (333), Expect = 7e-35
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 17/229 (7%)

Query: 46  GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAEL 105
            I E   N     I  +  + L  ++         ++ L L  N L      D+    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSP 165
             L+L  N L         +L++LR + L +N +  +         I  L+ ++N ++  
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISR- 113

Query: 166 LPLEIG-NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLIS 223
           +    G   K +     + N  + +   + G    ++YL L  N +   +  +      +
Sbjct: 114 VSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 224 LKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
           L+ LNL  N +   +   +   + L+ L+LS NKL   +     F + +
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGP--EFQSAA 214

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (286), Expect = 2e-28
 Identities = 45/253 (17%), Positives = 93/253 (36%), Gaps = 17/253 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +    L L+ LS+N L   L    + +LS +L    + N  +      E+    +   ++
Sbjct: 55  APFTKLELLNLSSNVLYETLD---LESLS-TLRTLDLNNNYVQ-----ELLVGPSIETLH 105

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SLP 120
              N ++    ++ S+ Q  + + L +NK+      D    + +  LDL  N++   +  
Sbjct: 106 AANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
              ++  +L  ++L  N +  V         +  L+ SSN L   +  E  +   +  I 
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ-GSIPDSFGDLISLKFLNLSNNNLSGAIP 239
              N    +I   +   +NLE+  L  N    G++ D F     ++ +            
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 240 ASLEKLSYLENLN 252
                +  L +  
Sbjct: 280 EEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 33/235 (14%), Positives = 81/235 (34%), Gaps = 15/235 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
               S+  ++ +NN +  +       +     ++  + N  I+     +    +    ++
Sbjct: 96  LVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 62  LGGNKLNG-SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           L  N+++  +     +    L+ L L+ N +   +   +   A+L  LDL  NKL+  + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMG 207

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
             F +   +  +SL +NKL  +       +++ + +   N       L     K      
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQT 266

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS 235
            +       +  +      +  L          +P  F D +    + L +++  
Sbjct: 267 VAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL----IALGHHHHH 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 3e-36
 Identities = 49/279 (17%), Positives = 86/279 (30%), Gaps = 25/279 (8%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSH-----------------SLEDFRMYNCNIS 44
               +++ + L+   +  +                             L+   +     S
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 45  GGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQ--KLQGLGLEDNKLEGSIPDDICHL 102
             I  +   L + + ++L  N L+ S   + S L    L+ L L  N     +  +   L
Sbjct: 342 --ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398

Query: 103 AELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
            EL  LD   + L        F +L  L  + +            F  L  +  L  + N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 161 -FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG 219
            F  + L     N   L  +D S      +       L  L+ L + +N L       + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 220 DLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
            L SL  L+ S N +  +          L   NL+ N +
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (351), Expect = 1e-35
 Identities = 63/291 (21%), Positives = 105/291 (36%), Gaps = 19/291 (6%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
           S   I LS NPL  +    S  N S  L+   +  C I     +    L + + + L GN
Sbjct: 33  STKNIDLSFNPLKIL-KSYSFSNFSE-LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SLPACFS 124
            +    P + S L  L+ L   + KL       I  L  L +L++  N +    LPA FS
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 125 NLTSLRIVSLGSNKLTSVP-LTFWNLKD----ILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           NLT+L  V L  N + ++       L++     L+L+ S N +   +  +      L  +
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHEL 209

Query: 180 DFSMNNFSGVIP-TEIGGLKNLEYL------FLGYNRLQGSIPDSFGDLISLKF--LNLS 230
               N  S  I  T +  L  L         F     L+   P     L  +      L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 231 NNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 281
             N           L+ +  ++L+   ++  +        + + S    +L
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  131 bits (332), Expect = 4e-33
 Identities = 47/283 (16%), Positives = 93/283 (32%), Gaps = 20/283 (7%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
              ++T     +  L  +       ++  S ++  +    +        SN +    ++L
Sbjct: 10  VVPNITY-QCMDQKLSKVPD-----DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL 63

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC 122
              ++          L  L  L L  N ++   P     L  L  L     KL+      
Sbjct: 64  SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

Query: 123 FSNLTSLRIVSLGSNKLTSVPL--TFWNLKDILNLNFSSNFLTSPLPLEIGNLK----VL 176
              L +L+ +++  N + S  L   F NL ++++++ S N++ +    ++  L+    V 
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 177 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP-DSFGDLISLKFLNLS----- 230
           + +D S+N     I  +      L  L L  N    +I      +L  L    L      
Sbjct: 184 LSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 231 -NNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
              NL    P+ +E L  +                   F   +
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (311), Expect = 3e-30
 Identities = 59/284 (20%), Positives = 98/284 (34%), Gaps = 24/284 (8%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKT--SVGNLSHSLEDFRMYNCNISGGIPEEISNLTNST 58
            SN  +L  + LS N +  I       +           M    I   I ++        
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 59  IVNLGGNKLNGSIP-ITLSKLQKLQGLGLEDNKLEG---------SIPDDICHLAELYRL 108
            + L GN  + +I    L  L  L    L   + +          SI + +C +      
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE-F 266

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPL 168
            L            F  L ++  +SL    +  +           +L+     L     L
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 169 EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL--ISLKF 226
           ++  LK L     +MN  S  I  +   L +L YL L  N L  S   S+ DL   SL+ 
Sbjct: 326 DLPFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 227 LNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
           L+LS N     + A+   L  L++L+   + L+  +    +F +
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR-VTEFSAFLS 422

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (303), Expect = 3e-29
 Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 23/280 (8%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
                L+ + L+ NP+       S   L+ SLE+       ++      I  L     +N
Sbjct: 77  HGLHHLSNLILTGNPIQSF-SPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 62  LGGNKLNG-SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAEL----YRLDLDGNKLS 116
           +  N ++   +P   S L  L  + L  N ++    +D+  L E       LD+  N + 
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 117 GSLPACFSNLTSLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLK 174
                 F  +  L  ++L  N  +S  +     NL  +               LEI    
Sbjct: 195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 175 VLIG--------IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKF 226
           ++ G           +  N       +   L N+  + L    +     +        + 
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQS 311

Query: 227 LNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG 266
           L++    L    P     L +L++L L+ NK      +  
Sbjct: 312 LSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (263), Expect = 3e-24
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 6/157 (3%)

Query: 117 GSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTSPLPLEIGNLKV 175
           GSL  C   + ++        KL+ VP     + K   N++ S N L         N   
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLSKVPDDIPSSTK---NIDLSFNPLKILKSYSFSNFSE 57

Query: 176 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS 235
           L  +D S      +      GL +L  L L  N +Q   P SF  L SL+ L      L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 236 GAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
                 + +L  L+ LN++ N +         F N +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLT 153

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 3/156 (1%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
            + + L  + +S               L+ SL   +M   +        + +N TN T +
Sbjct: 421 LSLEKLLYLDISYTNTKID-FDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +L   +L          L +LQ L +  N L          L  L  LD   N++  S  
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLN 156
                  SL   +L +N +  +      L+ +    
Sbjct: 539 ILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQK 574

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (343), Expect = 5e-35
 Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 10/287 (3%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           ++   L  + L+ N +  + P         +L    + +  +   IP  + + L+N T +
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNL--FNLRTLGLRSNRLKL-IPLGVFTGLSNLTKL 109

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSL 119
           ++  NK+   +      L  L+ L + DN L   I       L  L +L L+   L+   
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIP 168

Query: 120 PACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
               S+L  L ++ L    + ++   +F  L  +  L  S       +         L  
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAI 238
           +  +  N + V    +  L  L +L L YN +         +L+ L+ + L    L+   
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 239 PASLEKLSYLENLNLSFNKLEGEIPRG--GSFGNFSAESFEGNELLC 283
           P +   L+YL  LN+S N+L   +      S GN      + N L C
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 3e-31
 Identities = 54/269 (20%), Positives = 104/269 (38%), Gaps = 10/269 (3%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
               +         + P+     +        +    I     +E ++  +   + L  N
Sbjct: 12  QDRAVLCHRKRFVAV-PE----GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLPACFS 124
            ++   P   + L  L+ LGL  N+L+  IP  +   L+ L +LD+  NK+   L   F 
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125

Query: 125 NLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSM 183
           +L +L+ + +G N L  +    F  L  +  L      LTS     + +L  LI +    
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 184 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLE 243
            N + +       L  L+ L + +     ++  +    ++L  L++++ NL+     ++ 
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

Query: 244 KLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
            L YL  LNLS+N +   I          
Sbjct: 246 HLVYLRFLNLSYNPIS-TIEG-SMLHELL 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 2e-34
 Identities = 45/281 (16%), Positives = 103/281 (36%), Gaps = 18/281 (6%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
           N     +  ++++ L   L   S+   + ++++  +    +S     +++  T   ++NL
Sbjct: 8   NGNRYKIEKVTDSSLKQALA--SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC 122
             N L  ++ +    L  L+ L L +N ++     ++     +  L    N +S    + 
Sbjct: 66  SSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSR 118

Query: 123 FSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTS-PLPLEIGNLKVLIGID 180
                ++    L +NK+T +  L       +  L+   N + +        +   L  ++
Sbjct: 119 GQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
              N     +  ++     L+ L L  N+L   +   F     + +++L NN L   I  
Sbjct: 176 LQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 241 SLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 281
           +L     LE+ +L  N       R     N   ++     +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  127 bits (320), Expect = 6e-32
 Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 14/216 (6%)

Query: 46  GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAEL 105
            I E   N     I  +  + L  ++         ++ L L  N L      D+    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSP 165
             L+L  N L         +L++LR + L +N +  +         I  L+ ++N ++  
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISR- 113

Query: 166 LPLEIG-NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLIS 223
           +    G   K +     + N  + +   + G    ++YL L  N +   +  +      +
Sbjct: 114 VSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 224 LKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           L+ LNL  N +   +   +   + L+ L+LS NKL 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (309), Expect = 2e-30
 Identities = 39/259 (15%), Positives = 92/259 (35%), Gaps = 19/259 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
            +  ++  + LS NPL  I     +   +  LE   + +  +      ++ +L+    ++
Sbjct: 31  QSAWNVKELDLSGNPLSQISAAD-LAPFT-KLELLNLSSNVLYE--TLDLESLSTLRTLD 86

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L  N +       L     ++ L   +N +   +            + L  NK++     
Sbjct: 87  LNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDL 138

Query: 122 CFSNLTSLRIVSLGSNKLTSVPL--TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
                + ++ + L  N++ +V       +   + +LN   NF+   +  ++     L  +
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTL 196

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS-GAI 238
           D S N  +  +  E      + ++ L  N+L   I  +     +L+  +L  N    G +
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 239 PASLEKLSYLENLNLSFNK 257
                K   ++ +     K
Sbjct: 255 RDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (271), Expect = 1e-25
 Identities = 39/267 (14%), Positives = 74/267 (27%), Gaps = 11/267 (4%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISG-GIPEEISNLTNSTIV 60
           S  +    IYL+NN +  +      G  S  ++   +    I      E  ++      +
Sbjct: 117 SRGQGKKNIYLANNKITML-RDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           NL  N +   +        KL+ L L  NKL   +  +    A +  + L  NKL   + 
Sbjct: 175 NLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
                  +L    L  N      L  +  K+      +   +            V     
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNLSNNNLSG 236
           +       +       L  L+         QGS    +     +    + ++        
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 237 AIPASLEKLSYLENLNLSFNKLEGEIP 263
            I     +      L      L+ ++ 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (268), Expect = 4e-25
 Identities = 35/269 (13%), Positives = 85/269 (31%), Gaps = 15/269 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
               S+  ++ +NN +  +       +     ++  + N  I+     +    +    ++
Sbjct: 96  LVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 62  LGGNKLNG-SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           L  N+++  +     +    L+ L L+ N +   +   +   A+L  LDL  NKL+  + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMG 207

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
             F +   +  +SL +NKL  +       +++ + +   N       L     K      
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQT 266

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG---- 236
            +      +                G    +         LI+LK    +  +  G    
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 237 AIPASLEKLSYLENLNLSFNKLEGEIPRG 265
            +    E  +    ++    +    +   
Sbjct: 327 RLECERENQARQREIDALKEQYR-TVIDQ 354

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (259), Expect = 5e-24
 Identities = 31/264 (11%), Positives = 71/264 (26%), Gaps = 13/264 (4%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
                 +  + L  N +D +       +   +LE   +    I   +  ++        +
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYNFIYD-VKGQV-VFAKLKTL 196

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS-GSL 119
           +L  NKL   +         +  + L +NKL   I   +     L   DL GN    G+L
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 120 PACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
              FS    ++  ++    +  +              ++ +             L  L  
Sbjct: 255 RDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 179 IDFSM----NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
            + ++     + +  +  E         +     + +  I        +   L      L
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 235 SGAIPASLEKLSYLENLNLSFNKL 258
              +       + L+         
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 170 IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNL 229
             N         + ++    + +      N++ L L  N L             L+ LNL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 230 SNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGS 267
           S+N L       LE LS L  L+L+ N ++ E+  G S
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPS 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 19/71 (26%), Positives = 29/71 (40%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLE 249
           I          +   +  + L+ ++        ++K L+LS N LS    A L   + LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 250 NLNLSFNKLEG 260
            LNLS N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 16/242 (6%), Positives = 42/242 (17%), Gaps = 26/242 (10%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLS----------HSLEDFRMYNC--------- 41
           +   ++L    L  N       +                   L       C         
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 42  -----NISGGIPEEISNLTNSTIVNLGG-NKLNGSIPITLSKLQKLQGLGLEDNKLEGSI 95
                ++     + +  L       L G       +        + + +     +    I
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 96  PDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNL 155
                       L+     L   +         L      +     +         +  L
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLL 412

Query: 156 NFSSNFLTSPL-PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI 214
                         +      +   D   +  + +        K      L       ++
Sbjct: 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472

Query: 215 PD 216
            +
Sbjct: 473 QE 474

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  134 bits (338), Expect = 8e-34
 Identities = 64/261 (24%), Positives = 102/261 (39%), Gaps = 41/261 (15%)

Query: 4   CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLG 63
                ++ +  + L   LP      L   +    + + N++  +P     L     + + 
Sbjct: 39  NNGNAVLNVGESGL-TTLPD----CLPAHITTLVIPDNNLTS-LPALPPELRT---LEVS 89

Query: 64  GNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACF 123
           GN+L  S+P+    L +L         L             L +L + GN+L+ SLP   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLP 140

Query: 124 SNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSM 183
             L  L   S+  N+L S+P     L     L   +N LTS LP+    L+ L     S 
Sbjct: 141 PGLQEL---SVSDNQLASLPALPSELC---KLWAYNNQLTS-LPMLPSGLQEL---SVSD 190

Query: 184 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLE 243
           N  +  +PT    L  L       NRL  S+P        LK L +S N L+ ++P    
Sbjct: 191 NQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPS 241

Query: 244 KLSYLENLNLSFNKLEGEIPR 264
           +   L+ L +S N+L   +P 
Sbjct: 242 E---LKELMVSGNRLT-SLPM 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (330), Expect = 8e-33
 Identities = 63/263 (23%), Positives = 101/263 (38%), Gaps = 37/263 (14%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
                 L++       L  +            L    ++   ++  +P     L     +
Sbjct: 100 PPGLLELSIFSNPLTHLPALPS---------GLCKLWIFGNQLTS-LPVLPPGLQE---L 146

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           ++  N+L  S+P   S+L KL      +N+L  S+P     L EL    +  N+L+ SLP
Sbjct: 147 SVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLP 197

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
              S L  L      +N+LTS+P     LK    L  S N LTS LP+    LK L    
Sbjct: 198 TLPSELYKL---WAYNNRLTSLPALPSGLK---ELIVSGNRLTS-LPVLPSELKEL---M 247

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
            S N  +  +P        L  L +  N+L   +P+S   L S   +NL  N LS     
Sbjct: 248 VSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302

Query: 241 SLEKLSYLENLNLSFNKLEGEIP 263
           +L +++     +    + +    
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (254), Expect = 4e-23
 Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 37/208 (17%)

Query: 73  ITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIV 132
           +          L + ++ L  ++PD +   A +  L +  N L+ SLPA    L +L   
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE-- 87

Query: 133 SLGSNKLTSVPLTFWNLK--DILN---------------LNFSSNFLTSPLPLEIGNLKV 175
            +  N+LTS+P+    L    I +               L    N LTS LP+    L+ 
Sbjct: 88  -VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPVLPPGLQE 145

Query: 176 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS 235
           L     S N  +  +P     L  L       N+L  S+P        L+ L++S+N L+
Sbjct: 146 L---SVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPS---GLQELSVSDNQLA 194

Query: 236 GAIPASLEKLSYLENLNLSFNKLEGEIP 263
            ++P    +L  L   N     L     
Sbjct: 195 -SLPTLPSELYKLWAYNNRLTSLPALPS 221

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
            L  ++  NN L      TS+  L   L++  +    ++  +P   S L     + + GN
Sbjct: 202 ELYKLWAYNNRL------TSLPALPSGLKELIVSGNRLTS-LPVLPSELKE---LMVSGN 251

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSN 125
           +L  S+P+  S L  L    +  N+L   +P+ + HL+    ++L+GN LS         
Sbjct: 252 RLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALR 305

Query: 126 LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
             +      G      +       +       ++++L      E       
Sbjct: 306 EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  127 bits (321), Expect = 4e-33
 Identities = 62/293 (21%), Positives = 115/293 (39%), Gaps = 26/293 (8%)

Query: 2   SNCK-SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             C+  L ++  S+  L+ + PK    +L        + N  I+     +  NL N   +
Sbjct: 27  FRCQCHLRVVQCSDLGLEKV-PK----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 81

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  NK++   P   + L KL+ L L  N+L+  +P+ +     L  L +  N+++    
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRK 138

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPL---TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
           + F+ L  + +V LG+N L S  +    F  +K +  +  +   +T+   +  G    L 
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLT 195

Query: 178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGA 237
            +    N  + V    + GL NL  L L +N +      S  +   L+ L+L+NN L   
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 238 IPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQV 290
           +P  L    Y++ + L  N +              +  F          +   
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS----------AIGSNDFCPPGYNTKKASYSG 297

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (310), Expect = 1e-31
 Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 21/272 (7%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
               L+ L NN +  I       NL + L    + N  IS   P   + L     + L  
Sbjct: 52  PDTALLDLQNNKITEI-KDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSL--PA 121
           N+L   +P  +   + LQ L + +N++   +   +   L ++  ++L  N L  S     
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 122 CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
            F  +  L  + +    +T++P     +L     L+   N +T      +  L  L  + 
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG---- 236
            S N+ S V    +    +L  L L  N+L   +P    D   ++ + L NNN+S     
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 237 --AIPASLEKLSYLENLNLSFNKLE-GEIPRG 265
               P    K +    ++L  N ++  EI   
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  111 bits (280), Expect = 2e-27
 Identities = 49/269 (18%), Positives = 100/269 (37%), Gaps = 48/269 (17%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           +    L  +YLS N L  +        +  +L++ R++   I+  + + + + L    +V
Sbjct: 97  APLVKLERLYLSKNQLKELPE-----KMPKTLQELRVHENEITK-VRKSVFNGLNQMIVV 150

Query: 61  NLGGNKLNGSI--PITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS 118
            LG N L  S         ++KL  + + D  +  +IP  +     L  L LDGNK++  
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKV 207

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
             A    L +L  + L  N +++V   +  N   +  L+ ++N L               
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK------------- 254

Query: 178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS-------FGDLISLKFLNLS 230
                       +P  +   K ++ ++L  N +  +I  +            S   ++L 
Sbjct: 255 ------------VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 231 NNNLSGAI--PASLEKLSYLENLNLSFNK 257
           +N +      P++   +     + L   K
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  126 bits (318), Expect = 1e-32
 Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 27/292 (9%)

Query: 2   SNCK-SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             C   L ++  S+  L  + PK     +S       + N +IS    ++   L +   +
Sbjct: 29  FGCHCHLRVVQCSDLGLKAV-PK----EISPDTTLLDLQNNDISELRKDDFKGLQHLYAL 83

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L  NK++       S L+KLQ L +  N L   IP ++   + L  L +  N++     
Sbjct: 84  VLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPK 140

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPL---TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
             FS L ++  + +G N L +       F  LK +  L  S   LT         L  L 
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNEL- 198

Query: 178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGA 237
                 N    +   ++     L  L LG+N+++     S   L +L+ L+L NN LS  
Sbjct: 199 --HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 238 IPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQ 289
           +PA L  L  L+ + L  N +                 F             
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT----------KVGVNDFCPVGFGVKRAYYN 297

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 1e-24
 Identities = 58/267 (21%), Positives = 99/267 (37%), Gaps = 45/267 (16%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           S  + L  +Y+S N L  I P     NL  SL + R+++  I   +P+ + S L N   +
Sbjct: 99  SPLRKLQKLYISKNHLVEIPP-----NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCI 152

Query: 61  NLGGNKL-NGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
            +GGN L N           KL  L + + KL   IP D+     L  L LD NK+    
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIE 209

Query: 120 PACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
                  + L  + LG N++  +   +   L  +  L+  +N L+               
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-------------- 255

Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL------ISLKFLNLSNN 232
                      +P  +  LK L+ ++L  N +     + F  +           ++L NN
Sbjct: 256 -----------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 233 NLSGAI--PASLEKLSYLENLNLSFNK 257
            +      PA+   ++    +     K
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 3e-32
 Identities = 50/262 (19%), Positives = 100/262 (38%), Gaps = 15/262 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +   +++   L +  ++ +       + +   +   + NC        ++ +L     + 
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQFPTLKLKSLKR---LT 331

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLE--GSIPDDICHLAELYRLDLDGNKLSGSL 119
              NK   +   +   L  L+ L L  N L   G           L  LDL  N +  ++
Sbjct: 332 FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 120 PACFSNLTSLRIVSLGSNKLTSVP--LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
            + F  L  L  +    + L  +     F +L++++ L+ S              L  L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 178 GIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG 236
            +  + N+F      +I   L+NL +L L   +L+   P +F  L SL+ LN+++N L  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 237 AIPASLEKLSYLENLNLSFNKL 258
                 ++L+ L+ + L  N  
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  118 bits (298), Expect = 8e-29
 Identities = 59/294 (20%), Positives = 101/294 (34%), Gaps = 40/294 (13%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSH------SLEDFRMYNCNISGGIPEEISNLTNSTI 59
            L  + L NN     + KT +  L+        L +FR    N+       +  L N TI
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-NLEKFDKSALEGLCNLTI 259

Query: 60  VNLGGNKLNGS---IPITLSKLQKLQGLGLEDNKLEGSIPDDICH--------------- 101
                  L+     I    + L  +    L    +E  + D   +               
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQ 318

Query: 102 -----LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT---FWNLKDIL 153
                L  L RL    NK   +      +L SL  + L  N L+         +    + 
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 154 NLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQG 212
            L+ S N + + +      L+ L  +DF  +N   +    +   L+NL YL + +   + 
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 213 SIPDSFGDLISLKFLNLSNNNLSGAIPA-SLEKLSYLENLNLSFNKLEGEIPRG 265
           +    F  L SL+ L ++ N+           +L  L  L+LS  +LE ++   
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (286), Expect = 4e-27
 Identities = 62/269 (23%), Positives = 95/269 (35%), Gaps = 19/269 (7%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
           S   + LS NPL  +    S  +    L+   +  C I         +L++ + + L GN
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKL-SGSLPACFS 124
            +        S L  LQ L   +  L       I HL  L  L++  N + S  LP  FS
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 125 NLTSLRIVSLGSNKLTSVPL-TFWNLK----DILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
           NLT+L  + L SNK+ S+       L       L+L+ S N +   +         L  +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 180 DFSMNNFSGVIP-TEIGGLKNLEYL------FLGYNRLQGSIPDSFGDLISLKFLNLSNN 232
               N  S  +  T I GL  LE        F     L+     +   L +L        
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 233 NLSG---AIPASLEKLSYLENLNLSFNKL 258
            L      I      L+ + + +L    +
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 7e-27
 Identities = 45/245 (18%), Positives = 86/245 (35%), Gaps = 14/245 (5%)

Query: 28  NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE 87
           NL  S ++  +    +         +     +++L   ++          L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 88  DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL--T 145
            N ++         L+ L +L      L+        +L +L+ +++  N + S  L   
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 146 FWNLKDILNLNFSSNFLTSPLPLEIGNLKVL----IGIDFSMNNFSGVIPTEIGGLKNLE 201
           F NL ++ +L+ SSN + S    ++  L  +    + +D S+N  +  I         L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH 203

Query: 202 YLFLGYNRLQGSIPD-SFGDLISLKFLNL------SNNNLSGAIPASLEKLSYLENLNLS 254
            L L  N    ++       L  L+   L      +  NL     ++LE L  L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 255 FNKLE 259
              L+
Sbjct: 264 LAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (271), Expect = 3e-25
 Identities = 57/311 (18%), Positives = 108/311 (34%), Gaps = 54/311 (17%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV- 60
            + K+L  + +++N +          NL+ +LE   + +  I      ++  L    ++ 
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 61  ---NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC----------------- 100
              +L  N +N  I     K  +L  L L +N    ++                      
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 101 --------------HLAELYRLDLDGNKLSGS---LPACFSNLTSLRIVSLGSNKLTSVP 143
                          L  L   +     L      +   F+ LT++   SL S  +  V 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 144 --LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE 201
                +  + +  +N       +   L++ +LK L    F+ N            L +LE
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRL---TFTSNKGGNAFSEV--DLPSLE 350

Query: 202 YLFLGYNRLQ--GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           +L L  N L   G    S     SLK+L+LS N +   + ++   L  LE+L+   + L+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 260 GEIPRGGSFGN 270
            ++     F +
Sbjct: 410 -QMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (267), Expect = 1e-24
 Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 18/241 (7%)

Query: 1   MSNCKSLTLIYLSNNPLDGI-LPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTI 59
               + L L+         + L        +           N  G    E+ +L +   
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS----------NKGGNAFSEV-DLPSLEF 351

Query: 60  VNLGGNKLN--GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG 117
           ++L  N L+  G    +      L+ L L  N +  ++  +   L +L  LD   + L  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 118 SLPAC-FSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEI-GNLK 174
                 F +L +L  + +            F  L  +  L  + N        +I   L+
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
            L  +D S      + PT    L +L+ L +  N+L+      F  L SL+ + L  N  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 235 S 235
            
Sbjct: 531 D 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 7e-22
 Identities = 61/304 (20%), Positives = 103/304 (33%), Gaps = 40/304 (13%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
            +   L+ + L+ NP+   L   +   LS SL+       N++      I +L     +N
Sbjct: 73  QSLSHLSTLILTGNPIQS-LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 62  LGGNKLN-GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAEL----YRLDLDGNKLS 116
           +  N +    +P   S L  L+ L L  NK++     D+  L ++      LDL  N ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 117 GSLPACFSNLTSLRIVSLGSNKLTS--VPLTFWNLKD------ILNLNFSSNFLTSPLPL 168
              P  F  +  L  ++L +N  +   +      L        +L    +   L      
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 169 EIGNLKVLIGIDFSMN---NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF------- 218
            +  L  L   +F +     +   I      L N+    L    ++     S+       
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 219 ------------GDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG 266
                         L SLK L  ++N    A   S   L  LE L+LS N L  +     
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 267 SFGN 270
           S   
Sbjct: 368 SDFG 371

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.3 bits (240), Expect = 2e-21
 Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 28/218 (12%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
            +  SL  + LS N L      +     + SL+   +    +   +      L     ++
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 62  LGGNKLNGSIP-ITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
              + L           L+ L  L +       +       L+ L  L + GN    +  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 121 A-CFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
              F+ L +L  + L   +L  +    F +L  +  LN +SN L S +P  I        
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGI-------- 513

Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 216
                             L +L+ ++L  N    S P 
Sbjct: 514 ---------------FDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
           C   + ++            +P    ++ K   NL+ S N L         +   L  +D
Sbjct: 3   CVEVVPNI-TYQCMELNFYKIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
            S      +       L +L  L L  N +Q     +F  L SL+ L     NL+     
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 241 SLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
            +  L  L+ LN++ N ++        F N +
Sbjct: 119 PIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLT 149

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (314), Expect = 1e-31
 Identities = 58/284 (20%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           +   ++  +Y+  N +   LP     N+   L    +   ++S  +P  I  N    T +
Sbjct: 90  AYAHTIQKLYMGFNAIR-YLPPHVFQNVP-LLTVLVLERNDLSS-LPRGIFHNTPKLTTL 146

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           ++  N L      T      LQ L L  N+L   +   +  +  L+  ++  N LS    
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST--- 200

Query: 121 ACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
              +   ++  +    N +  V       L     L    N LT    L   N   L+ +
Sbjct: 201 --LAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTDTAWLL--NYPGLVEV 253

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N    ++      ++ LE L++  NRL  ++      + +LK L+LS+N+L   + 
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC 283
            +  +   LENL L  N +   +    +       +   N+  C
Sbjct: 312 RNQPQFDRLENLYLDHNSIV-TLKL-STHHTLKNLTLSHNDWDC 353

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 3e-31
 Identities = 62/285 (21%), Positives = 107/285 (37%), Gaps = 36/285 (12%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIVN 61
              +  ++   N+ +  + P   + +    +E   + +  I   I     +       + 
Sbjct: 43  TLNNQKIVTFKNSTMRKL-PAALLDSFR-QVELLNLNDLQIEE-IDTYAFAYAHTIQKLY 99

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLP 120
           +G N +    P     +  L  L LE N L  S+P  I  +  +L  L +  N L     
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
             F   TSL+ + L SN+LT V L    +L    + N S N L++     +     +  +
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLLST-----LAIPIAVEEL 210

Query: 180 DFSMNNFSGVIP----------------TEIG---GLKNLEYLFLGYNRLQGSIPDSFGD 220
           D S N+ + V                  T+         L  + L YN L+  +   F  
Sbjct: 211 DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270

Query: 221 LISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
           +  L+ L +SNN L  A+    + +  L+ L+LS N L   + R 
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 3e-26
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 14/211 (6%)

Query: 50  EISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRL 108
           E   L N  IV    + +       L   ++++ L L D ++E  I      +   + +L
Sbjct: 40  EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKL 98

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLP 167
            +  N +    P  F N+  L ++ L  N L+S+P   F N   +  L+ S+N L     
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 168 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFL 227
                   L  +  S N  + V   ++  + +L +  + YN L      +    I+++ L
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 210

Query: 228 NLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
           + S+N+++  +   +     L  L L  N L
Sbjct: 211 DASHNSIN-VVRGPV--NVELTILKLQHNNL 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (257), Expect = 5e-24
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 14/222 (6%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAEL 105
           I   +        V++     +         L   + +  +++ +   +P  +     ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTS 164
             L+L+  ++       F+   +++ + +G N +  +P   F N+  +  L    N L+S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 165 PLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIS 223
            LP  I  N   L  +  S NN   +         +L+ L L  NRL   +      + S
Sbjct: 132 -LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 187

Query: 224 LKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
           L   N+S N LS     +L     +E L+ S N +   +   
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGP 223

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 6/192 (3%)

Query: 70  SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL 129
            I   L        + ++    +     +   L     +    + +     A   +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 130 RIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFS 187
            +++L   ++  +    F     I  L    N +   LP  +  N+ +L  +    N+ S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 130

Query: 188 GVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSY 247
            +          L  L +  N L+    D+F    SL+ L LS+N L+  +  SL  +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPS 187

Query: 248 LENLNLSFNKLE 259
           L + N+S+N L 
Sbjct: 188 LFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.3 bits (240), Expect = 8e-22
 Identities = 42/253 (16%), Positives = 89/253 (35%), Gaps = 47/253 (18%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
               SL  + LS+N L  +     +  +  SL    +    +S      ++       ++
Sbjct: 162 QATTSLQNLQLSSNRLTHV----DLSLIP-SLFHANVSYNLLS-----TLAIPIAVEELD 211

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              N +N  +   +    +L  L L+ N L  +    + +   L  +DL  N+L   +  
Sbjct: 212 ASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
            F  +  L  + + +N+L ++ L    +  +  L+ S N L                   
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH----------------- 309

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG----A 237
                   +         LE L+L +N +  ++        +LK L LS+N+       A
Sbjct: 310 --------VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRA 358

Query: 238 IPASLEKLSYLEN 250
           +  ++ + +  + 
Sbjct: 359 LFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 1/128 (0%)

Query: 138 KLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGL 197
           +   +           +++            E   L     + F  +    +    +   
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNK 257
           + +E L L   +++     +F    +++ L +  N +    P   + +  L  L L  N 
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 258 LEGEIPRG 265
           L   +PRG
Sbjct: 129 LS-SLPRG 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (323), Expect = 1e-31
 Identities = 67/325 (20%), Positives = 117/325 (36%), Gaps = 24/325 (7%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +     +       + +      T  G    S+    + +  +          L +  ++
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           NL  NK+N         L  LQ L L  N L      +   L ++  +DL  N ++    
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 121 ACFSNLTSLRIVSLGSNKLTSVP---------LTFWNLKDILNLNFSSNFL--------T 163
             F  L  L+ + L  N LT++          L+   L  +  +N ++N +         
Sbjct: 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415

Query: 164 SPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSI-----PDS 217
             +   +  +  L  +  + N FS     +      +LE LFLG N LQ +       D 
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFE 277
           F  L  L+ L L++N L+   P     L+ L  L+L+ N+L   +       N       
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDIS 534

Query: 278 GNELLCGSPNLQVPPCKTSIHHTSW 302
            N+LL  +P++ V      I H  +
Sbjct: 535 RNQLLAPNPDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (302), Expect = 5e-29
 Identities = 58/283 (20%), Positives = 98/283 (34%), Gaps = 26/283 (9%)

Query: 2   SNCKSLTLIYLSNNPL-DGILPKTSVGNLSHSLEDFRMYNCNISG-GIPEEISNLTNSTI 59
                L  + L    L D +L      NL  +L    +    I    +      L +   
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 60  VNLGGNKLNGSIPITLSKLQ--KLQGLGLEDNKLEGSIPDDICHLAELYR------LDLD 111
           ++   N++       L  LQ   L    L  N L   +  D       +R      LD+ 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 112 GNKLSGSLPACFSN------------LTSLRIVSLGSNKLTSVPL-TFWNLKD--ILNLN 156
           GN  +  +   FSN               +     G + +      TF  L    + +L+
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 157 FSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 216
            S  F+ S        LK L  ++ + N  + +      GL NL+ L L YN L      
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 217 SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           +F  L  + +++L  N+++     + + L  L+ L+L  N L 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  118 bits (297), Expect = 2e-28
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 29/281 (10%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIVNLGG 64
           +   + LS N +  +   +S   L   L+   + +      I +E   NL N  I++LG 
Sbjct: 25  TTERLLLSFNYIRTV-TASSFPFLEQ-LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSI--PDDICHLAELYRLDLDGNKLSG-SLPA 121
           +K+    P     L  L  L L    L  ++       +L  L RLDL  N++    L  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 122 CFSNLTSLRIVSLGSNKLTSVP-LTFWNL--KDILNLNFSSNFLTSPLPLEI-------- 170
            F  L SL+ +   SN++  V       L  K +   + ++N L S + ++         
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 171 ----------GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
                     GN   +       N  S      +    ++     G++ ++    ++F  
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 221 L--ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           L   S++ L+LS+  +        E L  L+ LNL++NK+ 
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (294), Expect = 5e-28
 Identities = 54/286 (18%), Positives = 103/286 (36%), Gaps = 34/286 (11%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGI--PEEISNLTNSTI 59
            N  +L ++ L ++ +  + P    G     L + R+Y C +S  +       NL   T 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGL--FHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 60  VNLGGNKLNG-SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLA--ELYRLDLDGNKLS 116
           ++L  N++    +  +  KL  L+ +    N++      ++  L    L    L  N L 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 117 GSLPACFSNL------TSLRIVSLGSNKLTSVP-------------LTFWNLKDILNLNF 157
             +   +           L I+ +  N  T                 +      I+   F
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 158 SSNFLTSP-----LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
             + +  P       L   +++ L   D S      +       LK+L+ L L YN++  
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHL---DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 213 SIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
              ++F  L +L+ LNLS N L     ++   L  +  ++L  N +
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (282), Expect = 2e-26
 Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 23/290 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
              K L ++ L+ N ++ I    +   L  +L+   +    +          L     ++
Sbjct: 287 ETLKDLKVLNLAYNKINKI-ADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L  N +      T   L+KLQ L L DN L       I  +  +  + L GNKL  +LP 
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPK 398

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLT--FWNLKDILNLNFSSNFLTS-PLPLEIGNLKVLIG 178
                  +    L  N+L ++ +      +  +  L  + N  +S            L  
Sbjct: 399 INLTANLIH---LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 179 IDFSMNNFSGVIPTEI-----GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNN 233
           +    N       TE+      GL +L+ L+L +N L    P  F  L +L+ L+L++N 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 234 LSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC 283
           L+      L   + LE L++S N+L    P    F + S      N+ +C
Sbjct: 516 LTVLSHNDL--PANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  108 bits (272), Expect = 3e-25
 Identities = 56/233 (24%), Positives = 85/233 (36%), Gaps = 25/233 (10%)

Query: 52  SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICH-LAELYRLDL 110
             L  +  + L  N +      +   L++LQ L L       +I  +    L  L  LDL
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 111 DGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL---TFWNLKDILNLNFSSNFLTS-PL 166
             +K+    P  F  L  L  + L    L+   L    F NLK +  L+ S N + S  L
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGL--KNLEYLFLGYNRLQGSIPDSFGDL--- 221
               G L  L  IDFS N    V   E+  L  K L +  L  N L   +   +G     
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 222 ---ISLKFLNLSNNNLSGAIPA------------SLEKLSYLENLNLSFNKLE 259
              + L+ L++S N  +  I              SL    ++      F+ ++
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 155 LNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI 214
             +    LT  +P  +   + L     S N    V  +    L+ L+ L LG      +I
Sbjct: 9   AFYRFCNLTQ-VPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 215 -PDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
             ++F +L +L+ L+L ++ +    P + + L +L  L L F  L   + + G F N
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (314), Expect = 7e-31
 Identities = 62/285 (21%), Positives = 107/285 (37%), Gaps = 36/285 (12%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIVN 61
              +  ++   N+ +  + P   + +    +E   + +  I   I     +       + 
Sbjct: 49  TLNNQKIVTFKNSTMRKL-PAALLDSFR-QVELLNLNDLQIEE-IDTYAFAYAHTIQKLY 105

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLP 120
           +G N +    P     +  L  L LE N L  S+P  I  +  +L  L +  N L     
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
             F   TSL+ + L SN+LT V L    +L    + N S N L++     +     +  +
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLLST-----LAIPIAVEEL 216

Query: 180 DFSMNNFSGVIP----------------TEIG---GLKNLEYLFLGYNRLQGSIPDSFGD 220
           D S N+ + V                  T+         L  + L YN L+  +   F  
Sbjct: 217 DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 221 LISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
           +  L+ L +SNN L  A+    + +  L+ L+LS N L   + R 
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (311), Expect = 2e-30
 Identities = 58/284 (20%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           +   ++  +Y+  N +   LP     N+   L    +   ++S  +P  I  N    T +
Sbjct: 96  AYAHTIQKLYMGFNAIR-YLPPHVFQNVP-LLTVLVLERNDLSS-LPRGIFHNTPKLTTL 152

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           ++  N L      T      LQ L L  N+L   +   +  +  L+  ++  N LS    
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST--- 206

Query: 121 ACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
              +   ++  +    N +  V       L     L    N LT    L   N   L+ +
Sbjct: 207 --LAIPIAVEELDASHNSINVVRGPVNVELTI---LKLQHNNLTDTAWLL--NYPGLVEV 259

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D S N    ++      ++ LE L++  NRL  ++      + +LK L+LS+N+L   + 
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE 317

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC 283
            +  +   LENL L  N +   +    +       +   N+  C
Sbjct: 318 RNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWDC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (266), Expect = 1e-24
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 14/211 (6%)

Query: 50  EISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRL 108
           E   L N  IV    + +       L   ++++ L L D ++E  I      +   + +L
Sbjct: 46  EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKL 104

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLP 167
            +  N +    P  F N+  L ++ L  N L+S+P   F N   +  L+ S+N L     
Sbjct: 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 168 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFL 227
                   L  +  S N  + V   ++  + +L +  + YN L      +    I+++ L
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 216

Query: 228 NLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
           + S+N+++  +   +     L  L L  N L
Sbjct: 217 DASHNSIN-VVRGPV--NVELTILKLQHNNL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.5 bits (245), Expect = 5e-22
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 4/191 (2%)

Query: 70  SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL 129
            I   L        + ++    +     +   L     +    + +     A   +   +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 130 RIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSG 188
            +++L   ++  +    F     I  L    N +    P    N+ +L  +    N+ S 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 189 VIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYL 248
           +          L  L +  N L+    D+F    SL+ L LS+N L+  +  SL  +  L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSL 194

Query: 249 ENLNLSFNKLE 259
            + N+S+N L 
Sbjct: 195 FHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 6e-21
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 47/253 (18%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
               SL  + LS+N L  +     +  +  SL    +    +S      ++       ++
Sbjct: 168 QATTSLQNLQLSSNRLTHV----DLSLIP-SLFHANVSYNLLS-----TLAIPIAVEELD 217

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              N +N    +      +L  L L+ N L  +    + +   L  +DL  N+L   +  
Sbjct: 218 ASHNSINV---VRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
            F  +  L  + + +N+L ++ L    +  +  L+ S N L                   
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH----------------- 315

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG----A 237
                   +         LE L+L +N +  ++        +LK L LS+N+       A
Sbjct: 316 --------VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRA 364

Query: 238 IPASLEKLSYLEN 250
           +  ++ + +  + 
Sbjct: 365 LFRNVARPAVDDA 377

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 1/128 (0%)

Query: 138 KLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGL 197
           +   +           +++            E   L     + F  +    +    +   
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNK 257
           + +E L L   +++     +F    +++ L +  N +    P   + +  L  L L  N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 258 LEGEIPRG 265
           L   +PRG
Sbjct: 135 LS-SLPRG 141

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 2e-29
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 32/260 (12%)

Query: 4   CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLG 63
            +    + L+N  L      +S+  L   LE       +++  +PE   +L +  + N  
Sbjct: 70  DRQAHELELNNLGL------SSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 64  GNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACF 123
              L+   P        L+ LG+ +N+LE  +P ++ + + L  +D+D N L   LP   
Sbjct: 123 LKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLP 172

Query: 124 SNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSM 183
            +L  +   + G+N+L  +P    NL  +  +   +N L   LP    +L+ +       
Sbjct: 173 PSLEFI---AAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESI---VAGN 224

Query: 184 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLE 243
           N        E+  L  L  ++   N L+ ++PD      SL+ LN+ +N L+  +P   +
Sbjct: 225 NILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQ 277

Query: 244 KLSYLENLNLSFNKLEGEIP 263
            L++L+     F+ L    P
Sbjct: 278 SLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  116 bits (292), Expect = 2e-28
 Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 38/259 (14%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             + KSL +   +   L  + P          LE   + N  +   +P E+ N +   I+
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP---------LLEYLGVSNNQLE-KLP-ELQNSSFLKII 158

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           ++  N L   +P     L+ +      +N+LE  +P ++ +L  L  +  D N L   LP
Sbjct: 159 DVDNNSLK-KLPDLPPSLEFIA---AGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLP 211

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
               +L S+     G+N L  +P    NL  +  +   +N L + LP    +L+ L   +
Sbjct: 212 DLPLSLESI---VAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEAL---N 263

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
              N  +  +P     L  L+     ++ L    P       +L +LN S+N +  ++  
Sbjct: 264 VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCD 314

Query: 241 SLEKLSYLENLNLSFNKLE 259
                  LE LN+S NKL 
Sbjct: 315 LPPS---LEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (275), Expect = 4e-26
 Identities = 61/258 (23%), Positives = 97/258 (37%), Gaps = 38/258 (14%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           + N   LT IY  NN L       ++ +L  SLE   + +  ++  +PE   +LT   + 
Sbjct: 233 LQNLPFLTTIYADNNLL------KTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVS 285

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
               + L+   P        L  L    N++  S+ D    L EL   ++  NKL   LP
Sbjct: 286 ENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELP 333

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
           A    L  L       N L  VP    NLK    L+   N L    P    +++ L    
Sbjct: 334 ALPPRLERL---IASFNHLAEVPELPQNLK---QLHVEYNPLRE-FPDIPESVEDL---- 382

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
             MN+    +P       NL+ L +  N L+   PD      S++ L +++  +      
Sbjct: 383 -RMNSHLAEVPELPQ---NLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEF 434

Query: 241 SLEKLSYLENLNLSFNKL 258
           + E    LE+     +  
Sbjct: 435 AHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 1e-25
 Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 37/241 (15%)

Query: 32  SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKL------------- 78
            L++   ++ N++  +P E  N+ + T      ++   + P    +              
Sbjct: 12  FLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 79  QKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNK 138
           ++   L L +  L  S+P+   HL     L    N L+  LP    +L SL + +     
Sbjct: 71  RQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 139 LTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLK 198
           L+ +P        +  L  S+N L   LP E+ N   L  ID   N+    +P       
Sbjct: 126 LSDLP------PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPP--- 173

Query: 199 NLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
           +LE++  G N+L+  +P+   +L  L  +   NN+L   +P        LE++    N L
Sbjct: 174 SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL 227

Query: 259 E 259
           E
Sbjct: 228 E 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (265), Expect = 9e-25
 Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 40/259 (15%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           + N   LT IY  NN L        + +L  SLE     N  +      E+ NL   T +
Sbjct: 191 LQNLPFLTAIYADNNSL------KKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTI 242

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
               N L  ++P     L+ L    + DN L   +P+    L  L   +   + LS   P
Sbjct: 243 YADNNLLK-TLPDLPPSLEALN---VRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
                  +L  ++  SN++ S+     +L++   LN S+N L   LP     L+ L    
Sbjct: 298 -------NLYYLNASSNEIRSLCDLPPSLEE---LNVSNNKLIE-LPALPPRLERL---I 343

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
            S N+ +  +P       NL+ L + YN L+   PD    +  L+      N+    +P 
Sbjct: 344 ASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPE 393

Query: 241 SLEKLSYLENLNLSFNKLE 259
             + L   + L++  N L 
Sbjct: 394 LPQNL---KQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 39/210 (18%)

Query: 78  LQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNL----------- 126
              LQ      + L   +P +  ++          ++   + P                 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 127 --TSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN 184
                  + L +  L+S+P    +L+   +L  S N LT  LP    +LK L+  + ++ 
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLE---SLVASCNSLTE-LPELPQSLKSLLVDNNNLK 124

Query: 185 NFSGVIPT---------------EIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNL 229
             S + P                E+     L+ + +  N L+  +PD      SL+F+  
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAA 180

Query: 230 SNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
            NN L   +P  L+ L +L  +    N L+
Sbjct: 181 GNNQLE-ELP-ELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 26/152 (17%)

Query: 125 NLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG------ 178
           + T L+     S+ LT +P+   N+K       + +      P   G  + +        
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 179 -------IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN 231
                  ++ +    S  +P       +LE L    N L   +P+    L SL   N + 
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 232 NNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
             LS   P        LE L +S N+LE ++P
Sbjct: 124 KALSDLPPL-------LEYLGVSNNQLE-KLP 147

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  115 bits (291), Expect = 4e-29
 Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLE--GSIPDDICHLAE 104
           +P  I   +++T + L  NKL         KL +L  L L  N L   G           
Sbjct: 22  VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP--LTFWNLKDILNLNFSSNFL 162
           L  LDL  N +  ++ + F  L  L  +    + L  +     F +L++++ L+ S    
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 163 TSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDSFGD 220
                  I   L  L  +  + N+F      +I   L+NL +L L   +L+   P +F  
Sbjct: 139 RV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 221 LISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
           L SL+ LN+S+NN         + L+ L+ L+ S N +     + 
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQ 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  118 bits (296), Expect = 2e-28
 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 32/264 (12%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
           +   L   + N    +L +  +   S      ++   N+S  +P+ +      T++ +  
Sbjct: 37  EKQALPGENRNEAVSLLKECLINQFSE----LQLNRLNLSS-LPDNL--PPQITVLEITQ 89

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
           N L  S+P   + L+ L      DN+L  ++P+    L  L   D+D N+L+  LP   +
Sbjct: 90  NAL-ISLPELPASLEYLD---ACDNRLS-TLPELPASLKHL---DVDNNQLT-MLPELPA 140

Query: 125 NLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN 184
            L  +   +  +N+LT +P    +L+    L+  +N LT  LP    +L+ L   D S N
Sbjct: 141 LLEYI---NADNNQLTMLPELPTSLEV---LSVRNNQLTF-LPELPESLEAL---DVSTN 190

Query: 185 NFSGVIPTEIGGLKNLE----YLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
                +P       + E    +     NR+   IP++   L     + L +N LS  I  
Sbjct: 191 LLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 241 SLEKLSYLENLNLSFNKLEGEIPR 264
           SL + +   + +           +
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.6 bits (227), Expect = 7e-20
 Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 39/216 (18%)

Query: 70  SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG---NKLSGSLPACFSNL 126
           SI + ++    L       N + G+  D      +  +  L G   N+    L  C   +
Sbjct: 2   SIMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 127 TSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF 186
                + L    L+S+P        I  L  + N L S LP    +L+ L   D   N  
Sbjct: 59  NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS-LPELPASLEYL---DACDNRL 112

Query: 187 SGVIPTEIGGLK-----------------NLEYLFLGYNRLQGSIPDSFGDLISLKFLNL 229
           S  +P     LK                  LEY+    N+L   +P+      SL+ L++
Sbjct: 113 S-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPELPT---SLEVLSV 167

Query: 230 SNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
            NN L+  +P   E    LE L++S N LE  +P  
Sbjct: 168 RNNQLT-FLPELPES---LEALDVSTNLLE-SLPAV 198

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.9 bits (176), Expect = 1e-13
 Identities = 44/268 (16%), Positives = 81/268 (30%), Gaps = 41/268 (15%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
            L  I   NN L      T +  L  SLE   + N  ++  +PE   +L     +++  N
Sbjct: 141 LLEYINADNNQL------TMLPELPTSLEVLSVRNNQLTF-LPELPESLE---ALDVSTN 190

Query: 66  KLNGSIPITLSKLQKLQ----GLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
            L  S+P    +    +         +N++   IP++I  L     + L+ N LS S   
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIR 247

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
              +  + +    G     S+     N       +  + +       ++  +      + 
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEE 307

Query: 182 SMNNFSGV-------------------IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI 222
             N FS                     +   +  L     L      +     +S  D +
Sbjct: 308 HANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRV 367

Query: 223 SLKFLNLSNNNL-----SGAIPASLEKL 245
           +L + NL    L      G        L
Sbjct: 368 ALTWNNLRKTLLVHQASEGLFDNDTGAL 395

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  115 bits (291), Expect = 3e-28
 Identities = 60/243 (24%), Positives = 93/243 (38%), Gaps = 13/243 (5%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAEL 105
           +P+ I   +N+  +NL  N +      T   L  L+ L L  N +   I       LA L
Sbjct: 69  VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125

Query: 106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSS-NFLT 163
             L+L  N L+      F  L+ LR + L +N + S+P   F  +  ++ L+      L 
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 164 SPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI 222
             +       L  L  ++  M N   +    +  L  LE L +  N      P SF  L 
Sbjct: 186 Y-ISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 223 SLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG--GSFGNFSAESFEGNE 280
           SLK L + N+ +S     + + L+ L  LNL+ N L   +P                 N 
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301

Query: 281 LLC 283
             C
Sbjct: 302 WNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  112 bits (282), Expect = 5e-27
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 11/254 (4%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
             + +  +   L  + P+     +  +     +   NI     +   +L +  ++ LG N
Sbjct: 55  QFSKVVCTRRGLSEV-PQ----GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLPACFS 124
            +        + L  L  L L DN L   IP     +L++L  L L  N +       F+
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 125 NLTSLRIVSLGS-NKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
            + SL  + LG   KL  +    F  L ++  LN     +   +P  +  L  L  ++ S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMS 226

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL 242
            N+F  + P    GL +L+ L++  +++     ++F  L SL  LNL++NNLS       
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 243 EKLSYLENLNLSFN 256
             L YL  L+L  N
Sbjct: 287 TPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 10/189 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           +   SL  + L +N L  I            L +  + N  I   IP    + + +   +
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYL--SKLRELWLRNNPIE-SIPSYAFNRVPSLMRL 176

Query: 61  NLGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           +LG  K    I       L  L+ L L    ++  +P ++  L  L  L++ GN      
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIR 234

Query: 120 PACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEI-GNLKVLI 177
           P  F  L+SL+ + + +++++ +    F  L  ++ LN + N L+S LP ++   L+ L+
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLV 293

Query: 178 GIDFSMNNF 186
            +    N +
Sbjct: 294 ELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 30/144 (20%)

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
           C +  +    V      L+ VP                      +P    N + L   + 
Sbjct: 52  CSNQFSK---VVCTRRGLSEVP--------------------QGIP---SNTRYL---NL 82

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
             NN   +       L +LE L LG N ++     +F  L SL  L L +N L+     +
Sbjct: 83  MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142

Query: 242 LEKLSYLENLNLSFNKLEGEIPRG 265
            E LS L  L L  N +E  IP  
Sbjct: 143 FEYLSKLRELWLRNNPIE-SIPSY 165

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (288), Expect = 6e-28
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 15/244 (6%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAEL 105
           +P+ IS  TN+ ++NL  N++      +   L+ L+ L L  N +  +I       LA L
Sbjct: 58  VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114

Query: 106 YRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSS-NFL 162
             L+L  N+L+ ++P   F  L+ L+ + L +N + S+P   F  +  +  L+      L
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 163 TSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
           +  +       L  L  ++ +M N    IP  +  L  L+ L L  N L    P SF  L
Sbjct: 174 SY-ISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 222 ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG--GSFGNFSAESFEGN 279
           + L+ L +  + +      + + L  L  +NL+ N L   +P        +        N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

Query: 280 ELLC 283
              C
Sbjct: 290 PWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  111 bits (280), Expect = 7e-27
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 11/254 (4%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
             + +      L  + P      +S +     ++   I         +L +  I+ L  N
Sbjct: 44  QFSKVICVRKNLREV-PD----GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLPACFS 124
            +        + L  L  L L DN+L  +IP+    +L++L  L L  N +       F+
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 125 NLTSLRIVSLGS-NKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
            + SLR + LG   +L+ +    F  L ++  LN +   L   +P  +  L  L  +D S
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLS 215

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL 242
            N+ S + P    GL +L+ L++  +++Q    ++F +L SL  +NL++NNL+       
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 243 EKLSYLENLNLSFN 256
             L +LE ++L  N
Sbjct: 276 TPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 10/189 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           +   +L  + L +N L  I     V      L++  + N  I   IP    + + +   +
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYL--SKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165

Query: 61  NLGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           +LG  K    I       L  L+ L L    L   IP ++  L +L  LDL GN LS   
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIR 223

Query: 120 PACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEI-GNLKVLI 177
           P  F  L  L+ + +  +++  +    F NL+ ++ +N + N LT  LP ++   L  L 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLE 282

Query: 178 GIDFSMNNF 186
            I    N +
Sbjct: 283 RIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 7/145 (4%)

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
           C +  +    V      L  VP       +   LN   N +         +L+ L  +  
Sbjct: 41  CSNQFSK---VICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S N+   +      GL NL  L L  NRL      +F  L  LK L L NN +      +
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155

Query: 242 LEKLSYLENLNLS-FNKLEGEIPRG 265
             ++  L  L+L    +L   I  G
Sbjct: 156 FNRIPSLRRLDLGELKRLS-YISEG 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  107 bits (269), Expect = 2e-26
 Identities = 64/223 (28%), Positives = 92/223 (41%), Gaps = 35/223 (15%)

Query: 52  SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD 111
           S + +   VN     L  ++P  L K      L L +N L       +     L +L+LD
Sbjct: 7   SKVASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIG 171
             +L+  L      L  L  + L  N+L S+PL    L  +  L+ S N LTS LPL   
Sbjct: 64  RAELT-KLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGA- 119

Query: 172 NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS-FGDLISLKFLNLS 230
                           G        L  L+ L+L  N L+ ++P         L+ L+L+
Sbjct: 120 --------------LRG--------LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA 156

Query: 231 NNNLSGAIPASL-EKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
           NNNL+  +PA L   L  L+ L L  N L   IP+ G FG+  
Sbjct: 157 NNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK-GFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 98.6 bits (246), Expect = 3e-23
 Identities = 54/217 (24%), Positives = 78/217 (35%), Gaps = 39/217 (17%)

Query: 43  ISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHL 102
           +   +P       ++TI++L  N L      TL    +L  L L+  +L     D    L
Sbjct: 25  LPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TL 76

Query: 103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNF 161
             L  LDL  N+L  SLP     L +L ++ +  N+LTS+PL     L ++  L    N 
Sbjct: 77  PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDS-FG 219
           L +                         +P  +      LE L L  N L   +P     
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169

Query: 220 DLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
            L +L  L L  N+L   IP        L    L  N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 91.7 bits (228), Expect = 7e-21
 Identities = 52/236 (22%), Positives = 83/236 (35%), Gaps = 41/236 (17%)

Query: 2   SNCK-SLTLIYLSNNPLDGILPKTSV-GNLSHSLEDFRMYNCNISGGIPEEISNLTNSTI 59
            +   S   +      L      T++  +L        +    +       +   T  T 
Sbjct: 6   VSKVASHLEVNCDKRNL------TALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           +NL   +L   +      L  L  L L  N+L+ S+P     L  L  LD+  N+L+ SL
Sbjct: 60  LNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115

Query: 120 PA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI 177
           P      L  L+ + L  N+L ++P         +  L+ ++N LT              
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE------------- 162

Query: 178 GIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNN 232
                       +P  +  GL+NL+ L L  N L  +IP  F     L F  L  N
Sbjct: 163 ------------LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (275), Expect = 7e-26
 Identities = 45/294 (15%), Positives = 92/294 (31%), Gaps = 24/294 (8%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEE-ISNLTNSTIV 60
               SL  + L  NP   +   +   NL+ +L+  R+ N      I     + LT+   +
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            +    L      +L  ++ +  L L  ++    +      L+ +  L+L    L+    
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 121 ACFSNLTSLRIVSLGSNK-----------LTSVPLTFWNLKDILNLNFSSNFLTSPLPLE 169
           +          +   + +           L  +      L ++   + + N L    P E
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 170 IGNLK--------VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
              +          +  +          + T    L+ ++ + +  +++          L
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 222 ISLKFLNLSNNNLSGAI---PASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
            SL+FL+LS N +        A       L+ L LS N L      G       
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (273), Expect = 1e-25
 Identities = 48/264 (18%), Positives = 92/264 (34%), Gaps = 18/264 (6%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             +C    L   + +  D +     V  ++  +    +    +   +    S L     +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVT--IRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDD---ICHLAELYRLDLDGNKLS- 116
            +  +K+          L+ L+ L L +N +      +         L  L L  N L  
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 117 -GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEI-GNLK 174
                     L +L  + +  N    +P +    + +  LN SS  +   +   I   L+
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLE 434

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
           VL   D S NN           L  L+ L++  N+L+ ++PD+      L  + +S N L
Sbjct: 435 VL---DVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQL 485

Query: 235 SGAIPASLEKLSYLENLNLSFNKL 258
                   ++L+ L+ + L  N  
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (268), Expect = 6e-25
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 8/278 (2%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
           +C +  +    +     I        L+ +++   +    I+     ++    N  ++ L
Sbjct: 3   SCDASGVCDGRSRSFTSIPS-----GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SLPA 121
             +++N         L  L+ L L DN L          L+ L  L+L GN      + +
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 122 CFSNLTSLRIVSLGS-NKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
            F NLT+L+ + +G+    + +  + F  L  +  L   +  L +     + +++ +  +
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
              ++  + ++      L ++ YL L    L                +       S    
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFE 277
            S  +L  L    L  +++E +       G+F+    +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (260), Expect = 6e-24
 Identities = 51/283 (18%), Positives = 105/283 (37%), Gaps = 32/283 (11%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
            + + +  + L  +    +L      ++  S+    + + N++      +     S+ + 
Sbjct: 169 KSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 62  LGGNKLN-------GSIPITLSKLQKLQGLGLEDNKLEG------SIPDDICHLAE---- 104
               + +         +   L  + +L  +  +D  L G      S  D +  L +    
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 105 -LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFL 162
            + RL +    L   L   +S L  ++ +++ ++K+  VP     +LK +  L+ S N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 163 TS---PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG---GLKNLEYLFLGYNRLQGSIPD 216
                      G    L  +  S N+    +         LKNL  L +  N     +PD
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 217 SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           S      ++FLNLS+  +   +   +     LE L++S N L+
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (251), Expect = 1e-22
 Identities = 49/299 (16%), Positives = 97/299 (32%), Gaps = 46/299 (15%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKT-SVGNLSHSLEDFRMYNCNISGG-------IPEEISN 53
               S+  + L +  L         V  +S  ++        ++         +   I  
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 54  LTNSTIVNLGGNKLNGSIPITLSKLQK--------LQGLGLEDNKLEGSIPDDICHLAEL 105
           L+     +   N L    P     + +        ++ L +    L   +      L ++
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT----FWNLKDILNLNFSSNF 161
            R+ ++ +K+     +   +L SL  + L  N +    L           +  L  S N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 162 LTS--PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG 219
           L S       +  LK L  +D S N F   +P      + + +L L    ++  +     
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--C 428

Query: 220 DLISLKFLNLSNNNLSGAIPASLEKLSY-------------------LENLNLSFNKLE 259
              +L+ L++SNNNL  +    L +L                     L  + +S N+L+
Sbjct: 429 IPQTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 53/310 (17%), Positives = 106/310 (34%), Gaps = 43/310 (13%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVG-------NLSH---------------SLEDFRMY 39
             C +L ++ L ++ ++ I              +LS                SL+   + 
Sbjct: 47  RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106

Query: 40  NCNISG-GIPEEISNLTNSTIVNLGGNKLNGSIP-ITLSKLQKLQGLGLEDNKLEGSIPD 97
                  G+     NLTN   + +G  +    I  I  + L  L  L ++   L      
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 98  DICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILN--- 154
            +  + +++ L L  ++ +  L      L+S+R + L    L     +   + ++ +   
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 155 -LNFSSNFLTSP-------LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNL------ 200
            L F  + LT         L   I  L  +   D ++N      P+E   +  L      
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 201 --EYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
               L +    L   +   +  L  +K + + N+ +     +  + L  LE L+LS N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 259 EGEIPRGGSF 268
             E  +  + 
Sbjct: 347 VEEYLKNSAC 356

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 16/215 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEE---ISNLTNST 58
           S  + +  I + N+ +  + P +   +L  SLE   +    +     +         +  
Sbjct: 307 SLLEKVKRITVENSKVFLV-PCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 59  IVNLGGNKLN--GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS 116
            + L  N L         L  L+ L  L +  N     +PD      ++  L+L    + 
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

Query: 117 GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
             +  C     +L ++ + +N L S  L    L+    L  S N L + LP +     VL
Sbjct: 424 -VVKTC--IPQTLEVLDVSNNNLDSFSLFLPRLQ---ELYISRNKLKT-LP-DASLFPVL 475

Query: 177 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 211
           + +  S N    V       L +L+ ++L  N   
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (263), Expect = 2e-25
 Identities = 63/217 (29%), Positives = 84/217 (38%), Gaps = 14/217 (6%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAEL 105
           +P  I     S  + L GN+++     +    + L  L L  N L   I       LA L
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 106 YRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLT 163
            +LDL  N    S+    F  L  L  + L    L  +    F  L  +  L    N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 164 SPLPLEI----GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG 219
           + LP +     GNL  L       N  S V      GL +L+ L L  NR+    P +F 
Sbjct: 143 A-LPDDTFRDLGNLTHL---FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 220 DLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
           DL  L  L L  NNLS     +L  L  L+ L L+ N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  102 bits (257), Expect = 9e-25
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 6/211 (2%)

Query: 28  NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE 87
            +  + +   ++   IS           N TI+ L  N L        + L  L+ L L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 88  DNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVP-L 144
           DN    S+       L  L+ L LD   L   L    F  L +L+ + L  N L ++P  
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 145 TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLF 204
           TF +L ++ +L    N ++S        L  L  +    N  + V P     L  L  L+
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 205 LGYNRLQGSIP-DSFGDLISLKFLNLSNNNL 234
           L  N L  ++P ++   L +L++L L++N  
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 33/163 (20%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
                L  ++L    L                             +   +   L     +
Sbjct: 102 HGLGRLHTLHLDRCGL------QE---------------------LGPGLFRGLAALQYL 134

Query: 61  NLGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGS 118
            L  N L  ++P  T   L  L  L L  N++  S+P+     L  L RL L  N+++  
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
            P  F +L  L  + L +N L+++P      L+ +  L  + N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  103 bits (258), Expect = 6e-25
 Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 21/222 (9%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAEL 105
           IP+ +    ++  ++L  N L      +     +LQ L L   +++ +I D     L+ L
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 106 YRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLT 163
             L L GN +  SL    FS L+SL+ +      L S+      +LK +  LN + N + 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 164 SPLPLE-----IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEY----LFLGYNRLQGSI 214
           S   L      + NL+ L   D S N    +  T++  L  +      L L  N +   I
Sbjct: 138 S-FKLPEYFSNLTNLEHL---DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 215 PDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
                  I LK L L  N L        ++L+ L+ + L  N
Sbjct: 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 94.3 bits (235), Expect = 7e-22
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 18/221 (8%)

Query: 24  TSV-GNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPI-TLSKLQKL 81
             +  NL  S ++  +    +         +     +++L   ++  +I       L  L
Sbjct: 20  YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 82  QGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKL 139
             L L  N ++ S+       L+ L +L      L+ SL      +L +L+ +++  N +
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

Query: 140 TSVPL--TFWNLKDILNLNFSSNFLTSPLPLEI----GNLKVLIG-IDFSMNNFSGVIPT 192
            S  L   F NL ++ +L+ SSN + S +          + +L   +D S+N  +  I  
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 193 EIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISLKFLNLSNN 232
                  L+ L L  N+L+ S+PD  F  L SL+ + L  N
Sbjct: 195 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           S   SL  +      L   L    +G+L  +L++  + +  I      E  SNLTN   +
Sbjct: 97  SGLSSLQKLVAVETNLA-SLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 61  NLGGNKLNGSIPI-TLSKLQKLQG----LGLEDNKLEGSIPDDICHLAELYRLDLDGNKL 115
           +L  NK+  SI    L  L ++      L L  N +   I         L  L LD N+L
Sbjct: 155 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL 212

Query: 116 SGSLPACFSNLTSLRIVSLGSN 137
                  F  LTSL+ + L +N
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTN 234

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (264), Expect = 1e-24
 Identities = 58/258 (22%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
            N  S           D I    S   L+ +L     +N +I+      I  LT  T + 
Sbjct: 18  DNFASEVAAAFEMQATDTI----SEEQLA-TLTSLDCHNSSITD--MTGIEKLTGLTKLI 70

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              N +     + LS+   L  L  + NKL  ++   +  L +L  L+ D NKL+  L  
Sbjct: 71  CTSNNITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD- 122

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             S    L  ++   N LT + ++  +   +  L+   N   + L   +     L  +D 
Sbjct: 123 -VSQNPLLTYLNCARNTLTEIDVS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S N  + +   ++   K L  L    N +   +       I L FL+ S+N L+  I   
Sbjct: 178 SFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID-- 228

Query: 242 LEKLSYLENLNLSFNKLE 259
           +  L+ L   + S N L 
Sbjct: 229 VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (261), Expect = 3e-24
 Identities = 54/277 (19%), Positives = 93/277 (33%), Gaps = 48/277 (17%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S   +LT +   +N L  +     V  L+  L         ++     ++S     T +N
Sbjct: 82  SQNTNLTYLACDSNKLTNL----DVTPLT-KLTYLNCDTNKLT---KLDVSQNPLLTYLN 133

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              N L     I +S   +L  L    NK    +  D+    +L  LD   NK++  L  
Sbjct: 134 CARNTLT---EIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD- 186

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             S    L  ++  +N +T + L       +  L+ SSN LT    +++  L  L   D 
Sbjct: 187 -VSQNKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDC 240

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS--------------------FGDL 221
           S+N  + +   ++  L  L  L      L   I  +                        
Sbjct: 241 SVNPLTEL---DVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVTHN 296

Query: 222 ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
             L  L+     ++      L +   L  L L+  +L
Sbjct: 297 TQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (255), Expect = 1e-23
 Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 48/278 (17%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
                LT +  ++N +  +     +   + +L      +  ++  +   ++ LT  T +N
Sbjct: 61  EKLTGLTKLICTSNNITTL----DLSQNT-NLTYLACDSNKLTN-LD--VTPLTKLTYLN 112

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              NKL     + +S+   L  L    N L   I  D+ H  +L  LD   NK    L  
Sbjct: 113 CDTNKLT---KLDVSQNPLLTYLNCARNTLT-EI--DVSHNTQLTELDCHLNKKITKLD- 165

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             +  T L  +    NK+T + ++    K +  LN  +N +T    L++     L  +D 
Sbjct: 166 -VTPQTQLTTLDCSFNKITELDVS--QNKLLNRLNCDTNNITK---LDLNQNIQLTFLDC 219

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S N  + +   ++  L  L Y     N L   +  S   L  L  L+    +L   I  +
Sbjct: 220 SSNKLTEI---DVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDLT 272

Query: 242 --------------------LEKLSYLENLNLSFNKLE 259
                               +   + L  L+     + 
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 37/259 (14%), Positives = 80/259 (30%), Gaps = 26/259 (10%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +    LT +  S N +  +     V      L        NI+  +   ++     T ++
Sbjct: 167 TPQTQLTTLDCSFNKITEL----DVSQNK-LLNRLNCDTNNITK-LD--LNQNIQLTFLD 218

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              NKL     I ++ L +L       N L   +   +  L++L  L      L   +  
Sbjct: 219 CSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID- 270

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             ++ T L        +     L   +   +  L+  +  +T    L++     L+ +  
Sbjct: 271 -LTHNTQLIYFQAEGCRKIK-ELDVTHNTQLYLLDCQAAGITE---LDLSQNPKLVYLYL 325

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           +    + +   ++     L+ L      +Q     S G + +L     +          +
Sbjct: 326 NNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKET 380

Query: 242 LEKLSYLENLNLSFNKLEG 260
           L   S    ++       G
Sbjct: 381 LTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 18/187 (9%)

Query: 73  ITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIV 132
                         E    +         LA L  LD   + ++  +      LT L  +
Sbjct: 15  FPDDNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKL 69

Query: 133 SLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPT 192
              SN +T++ L+     ++  L   SN LT+   L++  L  L  ++   N  + +   
Sbjct: 70  ICTSNNITTLDLS--QNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKL--- 121

Query: 193 EIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLN 252
           ++     L YL    N L   I         L  L+   N     +   +   + L  L+
Sbjct: 122 DVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLD 176

Query: 253 LSFNKLE 259
            SFNK+ 
Sbjct: 177 CSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 23/243 (9%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           ++    LT +  S+N L  I     V  L+  L  F      ++  +   +S L+  T +
Sbjct: 208 LNQNIQLTFLDCSSNKLTEI----DVTPLT-QLTYFDCSVNPLTE-LD--VSTLSKLTTL 259

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           +     L     I L+   +L     E  +    +  D+ H  +LY LD     ++  L 
Sbjct: 260 HCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD 313

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
              S    L  + L + +LT + ++  +   + +L+  +  +       +G +  L    
Sbjct: 314 --LSQNPKLVYLYLNNTELTELDVS--HNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNF 367

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG---SIPDSFGDLISLKFLNLSNNNLSGA 237
            +      +    +        +        G   +I    G +       ++  NLS  
Sbjct: 368 EAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTD 427

Query: 238 IPA 240
            PA
Sbjct: 428 NPA 430

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (256), Expect = 3e-24
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 19/226 (8%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAEL 105
           IP  ++       ++L  N++       L +   LQ L L  N +  +I +D    L  L
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 106 YRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVP--LTFWNLKDILNLNFSSNFL 162
             LDL  N LS +L +  F  L+SL  ++L  N   ++     F +L  +  L   +   
Sbjct: 103 EHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 163 TSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD-SFGD 220
            + +  +    L  L  ++   ++     P  +  ++N+ +L L   +    + +     
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDV 220

Query: 221 LISLKFLNLSNNNLSG----AIPA----SLEKLSYLENLNLSFNKL 258
             S++ L L + +L       +      SL K     N+ ++   L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (254), Expect = 6e-24
 Identities = 56/277 (20%), Positives = 113/277 (40%), Gaps = 26/277 (9%)

Query: 4   CKSLTLIYLSNNPLDGILPKTSV-GNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
           C    +   S+  L       S+   L+ +++   + N  I+     ++    N   + L
Sbjct: 30  CDRNGICKGSSGSL------NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVL 83

Query: 63  GGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLP 120
             N +N +I   + S L  L+ L L  N L  ++       L+ L  L+L GN    +L 
Sbjct: 84  TSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLG 140

Query: 121 --ACFSNLTSLRIVSLGSN-KLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
             + FS+LT L+I+ +G+    T +    F  L  +  L   ++ L S  P  + +++ +
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 177 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG----SIP----DSFGDLISLKFLN 228
             +   M     ++   +    ++E L L    L       +     +S     + + + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
           +++ +L   +   L ++S L  L  S N+L+  +P G
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (253), Expect = 1e-23
 Identities = 42/268 (15%), Positives = 98/268 (36%), Gaps = 22/268 (8%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIVNLGG 64
           ++  + LSNN +   +  + +    + L+   + +  I+  I E+  S+L +   ++L  
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVN-LQALVLTSNGINT-IEEDSFSSLGSLEHLDLSY 109

Query: 65  NKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDIC--HLAELYRLDLDGNKLSGSLPA 121
           N L  ++       L  L  L L  N  + ++ +     HL +L  L +        +  
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 122 -CFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
             F+ LT L  + + ++ L S    +  +++++ +L          L + +     +  +
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 180 DFSMNNFSGVIPTEI--------GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN 231
           +    +      +E+                + +    L   +      +  L  L  S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 232 NNLSGAIPAS-LEKLSYLENLNLSFNKL 258
           N L   +P    ++L+ L+ + L  N  
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
             C +L  + L++N ++  + + S  +L  SLE   +    +S  +       L++ T +
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLG-SLEHLDLSYNYLSN-LSSSWFKPLSSLTFL 129

Query: 61  NLGGNKLNGSIP--ITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSG 117
           NL GN    ++      S L KLQ L + +      I       L  L  L++D + L  
Sbjct: 130 NLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 118 SLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEI------ 170
             P    ++ ++  + L   +   +  +       +  L      L +    E+      
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 171 --GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS-FGDLISLKFL 227
                     +  +  +    +   +  +  L  L    N+L+ S+PD  F  L SL+ +
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKI 306

Query: 228 NLSNNNL 234
            L  N  
Sbjct: 307 WLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 29/157 (18%)

Query: 115 LSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLK 174
              S      +     I    S  L S+P                    S L      +K
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLNSIP--------------------SGLT---EAVK 55

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
            L   D S N  + +  +++    NL+ L L  N +     DSF  L SL+ L+LS N L
Sbjct: 56  SL---DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 235 SGAIPASL-EKLSYLENLNLSFNKLEGEIPRGGSFGN 270
           S  + +S  + LS L  LNL  N  +  +     F +
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
           +    L  + +  + L       S+ ++  ++    ++       + E      ++   +
Sbjct: 171 AGLTFLEELEIDASDLQSY-EPKSLKSIQ-NVSHLILHMKQHIL-LLEIFVDVTSSVECL 227

Query: 61  NLGGNKLNG----SIPI----TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG 112
            L    L+      +      +L K    + + + D  L   +   +  ++ L  L+   
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 113 NKLSGSLPA-CFSNLTSLRIVSLGSNKLT 140
           N+L  S+P   F  LTSL+ + L +N   
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (257), Expect = 1e-23
 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 8/256 (3%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSH-SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
           +L  I  + N    IL       + + S+ + ++             ++L   +I  +  
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
           +               +       +            ++    LD   N L+ ++     
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 125 NLTSLRIVSLGSNKLTSVPLT---FWNLKDILNLNFSSNFLTSPLPLEI-GNLKVLIGID 180
           +LT L  + L  N+L  +         +K +  L+ S N ++           K L+ ++
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
            S N  +  I   +     ++ L L  N+++ SIP     L +L+ LN+++N L      
Sbjct: 406 MSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG 462

Query: 241 SLEKLSYLENLNLSFN 256
             ++L+ L+ + L  N
Sbjct: 463 IFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.7 bits (238), Expect = 3e-21
 Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 16/242 (6%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNC--NISGGIPEEI-SNLTNSTI 59
              ++    +SN  L G L          SL+   ++    ++ G     I    +N  I
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
            N   +       +  SK+     L   +N L  ++ ++  HL EL  L L  N+L   L
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-EL 363

Query: 120 PAC---FSNLTSLRIVSLGSNKLTSV--PLTFWNLKDILNLNFSSNFLTSPLPLEI-GNL 173
                  + + SL+ + +  N ++           K +L+LN SSN LT  +   +   +
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423

Query: 174 KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISLKFLNLSNN 232
           KVL   D   N     IP ++  L+ L+ L +  N+L+ S+PD  F  L SL+ + L  N
Sbjct: 424 KVL---DLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

Query: 233 NL 234
             
Sbjct: 479 PW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.4 bits (206), Expect = 3e-17
 Identities = 41/275 (14%), Positives = 79/275 (28%), Gaps = 23/275 (8%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
            +L  + LS N  D +      GN+S  L+   +   ++       I++L  S ++ + G
Sbjct: 90  VNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
                        LQ      L            I  ++     +L+ + +   L     
Sbjct: 149 ETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 125 NLT----------------SLRIVSLGSNKLTSVPLTFWNLK----DILNLNFSSNFLTS 164
           +                  +L  +    N    +    W+       I N+         
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 165 PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISL 224
                  +LK L       + F            N+       +  +         +   
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 225 KFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
             L+ SNN L+  +  +   L+ LE L L  N+L+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 48/251 (19%), Positives = 87/251 (34%), Gaps = 19/251 (7%)

Query: 28  NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE 87
           +LS       +    IS     +I +L+   I+ +  N++           Q+L+ L L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 88  DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC--FSNLTSLRIVSLGSNKLTSVPLT 145
            NKL   I         L  LDL  N    +LP C  F N++ L+ + L +  L    + 
Sbjct: 78  HNKLV-KISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 146 -FWNLKDILNLNFSSNFLTSPLP---LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE 201
              +L     L               L+  N + L  +  +   F  ++   +  + NLE
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 202 YLFLGYNRLQGSIPDSFGDLISL------KFLNLSNNNLSGAIPASLEKL---SYLENLN 252
              +               L  L        L L+N   +      + +L   + +   +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 253 LSFNKLEGEIP 263
           +S  KL+G++ 
Sbjct: 254 ISNVKLQGQLD 264

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 9/205 (4%)

Query: 56  NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKL 115
           +  +V+   N L   +P  LS+  K   L +  N +      DI  L++L  L +  N++
Sbjct: 1   SEFLVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 116 SGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS-PLPLEIGNLK 174
                + F     L  + L  NKL  +        ++ +L+ S N   + P+  E GN+ 
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 175 VLIGIDFSMNNFSGVIPTEIGGLKNLE-YLFLGYNRLQGSIPDSFGDL--ISLKFLNLSN 231
            L  +  S  +        I  L   +  L LG    +   P+   D    SL  +  +N
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 232 NNLSGAIPASLEKLSYLENLNLSFN 256
                 +  S++ ++ LE  N+   
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCV 200

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 11/214 (5%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAEL 105
           +P+++S    +TI+N+  N ++      +  L KL+ L +  N+++  +   +     EL
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQEL 71

Query: 106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT--FWNLKDILNLNFSSNFLT 163
             LDL  NKL   +        +L+ + L  N   ++P+   F N+  +  L  S+  L 
Sbjct: 72  EYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 164 SPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIS 223
               L I +L +   +      +      +  GL++     L              D+  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 224 LKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNK 257
               NL  +N+   +  +           L  N 
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 155 LNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 213
           ++ S N L   +P ++     +L   + S N  S +  ++I  L  L  L + +NR+Q  
Sbjct: 5   VDRSKNGLIH-VPKDLSQKTTIL---NISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 214 IPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
               F     L++L+LS+N L      S      L++L+LSFN  +  +P    FGN
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFD-ALPICKEFGN 113

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNIS--GGIPEEISNLTNSTI 59
           S       +  SNN L   + +   G+L+  LE   +    +     I E  + + +   
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENC-GHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 60  VNLGGNKLNGSIP-ITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS 118
           +++  N ++        S  + L  L +  N L  +I    C    +  LDL  NK+  S
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHSNKIK-S 435

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           +P     L +L+ +++ SN+L SVP   F  L  +  +   +N
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 15/209 (7%)

Query: 51  ISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDL 110
              L N+  +  G + +     +T + L  +  L      +  +I   + +L  L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 111 DGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEI 170
             N+++  L     NLT +  + L  N L +V      L+ I  L+ +S  +T   PL  
Sbjct: 71  KDNQIT-DLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLA- 126

Query: 171 GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLS 230
             L  L  +   +N  + + P  + GL NL+YL +G  ++   +     +L  L  L   
Sbjct: 127 -GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKAD 181

Query: 231 NNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           +N +S   P  L  L  L  ++L  N++ 
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.0 bits (247), Expect = 3e-23
 Identities = 52/258 (20%), Positives = 107/258 (41%), Gaps = 19/258 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           ++   +T +      +  I     V  L++ L    + +  I+      + NLT  T + 
Sbjct: 38  ADLDGITTLSAFGTGVTTI---EGVQYLNN-LIGLELKDNQITD--LAPLKNLTKITELE 91

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L GN L  ++   ++ LQ ++ L L   ++    P  +  L+ L  L LD N+++ ++  
Sbjct: 92  LSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP 146

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             + LT+L+ +S+G+ +++ +     NL  +  L    N ++   PL   +L  LI +  
Sbjct: 147 -LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHL 202

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
             N  S V P  +    NL  + L    +         +L+      +   + +   PA+
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPAT 258

Query: 242 LEKLSYLENLNLSFNKLE 259
           +       + NL++N   
Sbjct: 259 ISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 21/247 (8%)

Query: 12  LSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSI 71
                ++ I P      L++          N++       ++L   T ++  G  +  +I
Sbjct: 4   TQPTAINVIFP---DPALAN-AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI 56

Query: 72  PITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRI 131
              +  L  L GL L+DN++   +   + +L ++  L+L GN L  ++ A  + L S++ 
Sbjct: 57  EG-VQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPLK-NVSA-IAGLQSIKT 111

Query: 132 VSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP 191
           + L S ++T V      L ++  L    N +T+  PL    L  L  +       S + P
Sbjct: 112 LDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDLTP 168

Query: 192 TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENL 251
             +  L  L  L    N++   I      L +L  ++L NN +S   P  L   S L  +
Sbjct: 169 --LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 252 NLSFNKL 258
            L+   +
Sbjct: 223 TLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 13/174 (7%)

Query: 86  LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT 145
            +   +    PD    LA   ++    + ++ ++    ++L  +  +S     +T++   
Sbjct: 4   TQPTAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE-G 58

Query: 146 FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 205
              L +++ L    N +T   PL+  NL  +  ++ S N    V    I GL++++ L L
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDL 114

Query: 206 GYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
              ++    P     L +L+ L L  N ++   P  L  L+ L+ L++   ++ 
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 13/188 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +  +S+  + L++  +  +   T +  LS +L+   +    I+      ++ LTN   ++
Sbjct: 104 AGLQSIKTLDLTSTQITDV---TPLAGLS-NLQVLYLDLNQITN--ISPLAGLTNLQYLS 157

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           +G  +++   P  L+ L KL  L  +DNK+   I   +  L  L  + L  N++S   P 
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP- 212

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             +N ++L IV+L +  +T+ P+ + N   + N+           P  I +       + 
Sbjct: 213 -LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV-VKGPSGAPIAPATISDNGTYASPNL 270

Query: 182 SMNNFSGV 189
           + N  S +
Sbjct: 271 TWNLTSFI 278

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (252), Expect = 6e-23
 Identities = 49/277 (17%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNST---- 58
               L +             K         +E   +YN  I+  I  E    + +     
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 59  -IVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEG--SIPDDICHLAELYRLDLDGNKL 115
            I ++       S     S   ++    L  +       +       +    L+   N  
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS--PSSFTFLNFTQNVF 365

Query: 116 SGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKV 175
           + S+    S L  L+ + L  N L +        K++ +L      L S L         
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LN-------- 416

Query: 176 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS 235
                      S          +++  L L  N L GS+         +K L+L NN + 
Sbjct: 417 -----------SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

Query: 236 GAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
            +IP  +  L  L+ LN++ N+L+  +P  G F   +
Sbjct: 464 -SIPKDVTHLQALQELNVASNQLK-SVPD-GVFDRLT 497

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 90.3 bits (224), Expect = 2e-19
 Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 18/242 (7%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDF---RMYNCNISGGIPEEISNLTNSTI 59
             + +  + + N  +   + +        +L+      + N           S      I
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
             L  +       +          L    N    S+      L  L  L L  N L  + 
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 120 PACFSNLTSLRIVSLGSNKLTSVP------LTFWNLKDILNLNFSSNFLTSPLPLEI-GN 172
                   ++  +      L S+          W  + IL LN SSN LT  +   +   
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-AESILVLNLSSNMLTGSVFRCLPPK 451

Query: 173 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISLKFLNLSN 231
           +KVL   D   N     IP ++  L+ L+ L +  N+L+ S+PD  F  L SL+++ L +
Sbjct: 452 VKVL---DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506

Query: 232 NN 233
           N 
Sbjct: 507 NP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 57/284 (20%), Positives = 93/284 (32%), Gaps = 40/284 (14%)

Query: 4   CKSLTLIYLSNNPL----DGILPKTSVGNLSH----SLEDFRMYNCNISGGIPEEISNLT 55
            +  +++  SN  L      + P+T   +LS      L                +IS L+
Sbjct: 30  NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELR-------------MPDISFLS 76

Query: 56  NSTIVNLGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNK 114
              ++ L  N++  S+        Q L+ L +  N+L+ +I      +A L  LDL  N 
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFND 132

Query: 115 LSGSLPAC--FSNLTSLRIVSLGSNKLTSVPLTF----WNLKDILNLNFSSNFLTSPLPL 168
               LP C  F NLT L  + L + K   + L           +L+L            L
Sbjct: 133 FD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 169 EIGNLKVLIGID-----FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIS 223
           +I N  VL  +      FS+     V       L N++       RL   + +       
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 224 LKFLNLSNNNLSGAIPASLE--KLSYLENLNLSFNKLEGEIPRG 265
           L                  +      +E LN+    +   I R 
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 7e-15
 Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 10/235 (4%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI 152
            +P D+        L L  N +S       S L+ LR++ L  N++ S+    F   +D+
Sbjct: 45  HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102

Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRLQ 211
             L+ S N L +   +    +  L  +D S N+F  + +  E G L  L +L L   + +
Sbjct: 103 EYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 212 GSIPDSFGDL-ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL-EGEIPRGGSFG 269
                    L +S   L+L + ++ G    SL+  +    L+L F+      +    S  
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVN 218

Query: 270 NFSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVIL 324
                     +L   +    +          +  N  L  I      +  +    
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 46/273 (16%), Positives = 76/273 (27%), Gaps = 21/273 (7%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTI-VNLG 63
            SL  + LS N  D +      GNL+  L    +            +++L  S I ++L 
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 64  GNKLNGSIPITLSKLQ-KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC 122
              + G    +L      +  L    N L     +    +  L  L L   KL+      
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS--VNALGHLQLSNIKLNDENCQR 237

Query: 123 FSNLT------------SLRIVSLGSNKLTSVPLTFWNLK----DILNLNFSSNFLTSPL 166
                            +L+ +         +   FW       +I NL  +        
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKF 226
                 LK L+        F             +    L  +              S  F
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 227 LNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           LN + N  + ++      L  L+ L L  N L+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 11/120 (9%)

Query: 155 LNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 213
           +++S+  LT  +P ++    K L     S N+ S +   +I  L  L  L L +NR++ S
Sbjct: 36  VDYSNRNLTH-VPKDLPPRTKAL---SLSQNSISELRMPDISFLSELRVLRLSHNRIR-S 90

Query: 214 IPDS-FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFS 272
           +    F     L++L++S+N L   I      ++ L +L+LSFN  +  +P    FGN +
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLT 146

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 22/273 (8%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSH-SLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
             + L  + +S+N L   +    + +L H  L     +N      + +E  NLT  T + 
Sbjct: 98  FNQDLEYLDVSHNRLQN-ISCCPMASLRHLDL----SFNDFDVLPVCKEFGNLTKLTFLG 152

Query: 62  LGGNKLNGSIPITLSKLQ-KLQGLGLEDNKLEGSIPDDICHLA-ELYRLDLDGNKLSGSL 119
           L   K      + ++ L      L L    ++G   + +      +  L    N L    
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 120 ------PACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNL 173
                       L+++++      +L +          +LN+       T    +++   
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 174 KVLIGI---DFSMNNFSGVIPTEIGG-----LKNLEYLFLGYNRLQGSIPDSFGDLISLK 225
                +   +      +  I  E        LK+L    +       S    +     + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 226 FLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
              LS ++            S    LN + N  
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (250), Expect = 7e-23
 Identities = 60/294 (20%), Positives = 103/294 (35%), Gaps = 34/294 (11%)

Query: 2   SNCKSLTLIYLSNNPL-DGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTI 59
           +   +L ++ L+   L   +L       L+ SLE   + + NI    P     N+    +
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 60  VNLGGNKLNGSIPITLSKLQK--LQGLGLEDNKLEGSIPDDIC--------HLAELYRLD 109
           ++L  NK+       L   Q      L L    L+      +             +  LD
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 110 LDGNKLSGSLPACFSNLTSL-------------RIVSLGSNKLTSVP-LTFWNLK--DIL 153
           L GN    S+   F +  +                 S G          TF  L+   + 
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 154 NLNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
             + S + + + L   +  +   L  +  + N  + +      GL +L  L L  N L  
Sbjct: 279 TCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 213 SIPDSFGDLISLKFLNLSNNNLSGAIPA-SLEKLSYLENLNLSFNKLEGEIPRG 265
                F +L  L+ L+LS N++  A+   S   L  L+ L L  N+L+  +P G
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 7e-22
 Identities = 59/279 (21%), Positives = 98/279 (35%), Gaps = 54/279 (19%)

Query: 5   KSLTLIYLSNNPLDGI-------LPKTSVGNLS-HSLEDFRMYNCNISGGIPEEISNLTN 56
           +   ++ L+ N +  I               L   S+    M    +           T+
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 57  STIVNLGGNKLNGSIP---ITLSKLQKLQGLGLEDNKLEG---------SIPDDICH--- 101
            T ++L GN    S+           K+Q L L ++   G            +       
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 102 LAELYRLDLDGNKLSGSLPAC-FSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSS 159
            + +   DL  +K+  +L    FS+ T L  ++L  N++  +    FW L  +L LN S 
Sbjct: 274 ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 160 NFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIP-DS 217
           NFL S                         I + +   L  LE L L YN ++ ++   S
Sbjct: 333 NFLGS-------------------------IDSRMFENLDKLEVLDLSYNHIR-ALGDQS 366

Query: 218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
           F  L +LK L L  N L        ++L+ L+ + L  N
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.0 bits (226), Expect = 8e-20
 Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 20/243 (8%)

Query: 55  TNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGN 113
            +   V+L  N +      + S+LQ LQ L +E       I ++    L+ L  L LD N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 114 KLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL---TFWNLKDILNLNFSSNFLTSPLPLE 169
           +    L    F+ L +L +++L    L    L    F  L  +  L    N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 170 I-GNLKVLIGIDFSMNNFSGVIPTEIGGL--KNLEYLFLGYNRLQ--------GSIPDSF 218
              N++    +D + N    +   ++     K+   L L    LQ             + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 219 GDLISLKFLNLSNNNLSGAIPA---SLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAES 275
               S+  L+LS N    ++          + +++L LS +   G      +F +    +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 276 FEG 278
           F+G
Sbjct: 269 FKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 45/294 (15%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S  + L  + +       ++                                L++  I+ 
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIR-------------------------NNTFRGLSSLIILK 85

Query: 62  LGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGS-IPDDI-CHLAELYRLDLDGNKLSGS 118
           L  N+    +     + L  L+ L L    L+G+ +  +    L  L  L L  N +   
Sbjct: 86  LDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 119 LPAC-FSNLTSLRIVSLGSNKLTSVP-----------LTFWNLKDILNLNFSSNFLTSPL 166
            PA  F N+    ++ L  NK+ S+             T   L  I   + +  +L    
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL-------------FLGYNRLQGS 213
                    +  +D S N F   +            +               G+   +  
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 214 IPDSFGDLI--SLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
              +F  L    +K  +LS + +   + +     + LE L L+ N++  +I   
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDN 317

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 35/195 (17%)

Query: 70  SIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTS 128
            +P  ++ +       L  N +          L +L  L ++       +    F  L+S
Sbjct: 27  ELPAHVNYVD------LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 129 LRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFS 187
           L I+ L  N+   +    F  L ++  L  +   L                         
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA---------------------- 118

Query: 188 GVIPTEI-GGLKNLEYLFLGYNRLQGSIPDS-FGDLISLKFLNLSNNNLSGAIPASLEKL 245
            V+       L +LE L L  N ++   P S F ++     L+L+ N +       L   
Sbjct: 119 -VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177

Query: 246 --SYLENLNLSFNKL 258
              +   L LS   L
Sbjct: 178 QGKHFTLLRLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 42/227 (18%), Positives = 83/227 (36%), Gaps = 46/227 (20%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNL-------- 54
              S+T + LS N     + K     ++ +     + + + + G     +N         
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 55  -----TNSTIVNLGGNKLNGSIPITL-SKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYR 107
                +     +L  +K+  ++  ++ S    L+ L L  N++   I D+    L  L +
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327

Query: 108 LDLDGNKLSGSLPAC-FSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSP 165
           L+L  N L  S+ +  F NL  L ++ L  N + ++   +F  L ++  L   +N L S 
Sbjct: 328 LNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS- 385

Query: 166 LPLEIGNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQ 211
                                   +P  I   L +L+ ++L  N   
Sbjct: 386 ------------------------VPDGIFDRLTSLQKIWLHTNPWD 408

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 98.0 bits (245), Expect = 1e-22
 Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 348 WRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFES-FDV 406
            + FS  EL  A+D FS  N++G+GGFG VYK RL D   VAVK    +  +  E  F  
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQT 76

Query: 407 ECEMMKNIRHRNLIKILHG 425
           E EM+    HRNL++ L G
Sbjct: 77  EVEMISMAVHRNLLR-LRG 94

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 3e-22
 Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 19/252 (7%)

Query: 7   LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNK 66
           +      + P+  I P       +       +   +++  +    + L +   +    + 
Sbjct: 1   MGETITVSTPIKQIFP---DDAFAE-TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 54

Query: 67  LNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNL 126
           +  S+   +  L  +  L L  NKL   I   + +L  L  L LD NK+   L +   +L
Sbjct: 55  IK-SVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDL 108

Query: 127 TSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF 186
             L+ +SL  N ++ +     +L  + +L   +N +T    L    L  L  +    N  
Sbjct: 109 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI 165

Query: 187 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS 246
           S +    + GL  L+ L+L  N +  S   +   L +L  L L +             L 
Sbjct: 166 SDI--VPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 247 YLENLNLSFNKL 258
               +  +   L
Sbjct: 222 VPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 93.2 bits (231), Expect = 3e-20
 Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 41/258 (15%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +   S+  I  +N+ +  +                            + I  L N T + 
Sbjct: 40  NELNSIDQIIANNSDIKSV----------------------------QGIQYLPNVTKLF 71

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L GNKL   I   L+ L+ L  L L++NK++  +   +  L +L  L L+ N +S  +  
Sbjct: 72  LNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING 126

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
              +L  L  + LG+NK+T +      L  +  L+   N ++  +PL    L  L  +  
Sbjct: 127 -LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYL 182

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S N+ S +    + GLKNL+ L L          +   +L+    +  ++ +L    P  
Sbjct: 183 SKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEI 238

Query: 242 LEKLSYLENLNLSFNKLE 259
           +      E  N+ ++  E
Sbjct: 239 ISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 4e-18
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 13/179 (7%)

Query: 81  LQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT 140
           +         ++   PDD    AE  + +L    ++ ++    + L S+  +   ++ + 
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 141 SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNL 200
           SV      L ++  L  + N LT   PL   NLK L  +    N    +    +  LK L
Sbjct: 57  SVQ-GIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSS--LKDLKKL 111

Query: 201 EYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE 259
           + L L +N +   I +    L  L+ L L NN ++      L +L+ L+ L+L  N++ 
Sbjct: 112 KSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 9e-11
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 16/203 (7%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSH--SLEDFRMYNCNISGGIPEEISNLTNSTI 59
            + K L  + L +N +      + +  L H   LE   + N  I+      +S LT    
Sbjct: 106 KDLKKLKSLSLEHNGI------SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDT 157

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL 119
           ++L  N+++  I   L+ L KLQ L L  N +  S    +  L  L  L+L   +     
Sbjct: 158 LSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKP 213

Query: 120 PACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
               SNL     V      L +  +   +  D    N   +       +        + I
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIIS-DDGDYEKPNVKWHLPEFTNEVSF-IFYQPVTI 271

Query: 180 DFSMNNFSGVIPTEIGGLKNLEY 202
             +   F G +   +  +  + Y
Sbjct: 272 GKAKARFHGRVTQPLKEVYTVSY 294

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 65/214 (30%), Positives = 93/214 (43%), Gaps = 33/214 (15%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICH-LAEL 105
           IP  I    ++  ++L  NKL+        +L KL+ L L DNKL+ ++P  I   L  L
Sbjct: 31  IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 106 YRLDLDGNKLSGSLPAC-FSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLT 163
             L +  NKL  +LP   F  L +L  + L  N+L S+P   F +L  +  L+   N L 
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 164 SPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS-FGDLI 222
           S LP                    GV       L +L+ L L  N+L+  +P+  F  L 
Sbjct: 147 S-LP-------------------KGV----FDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181

Query: 223 SLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
            LK L L NN L      + + L  L+ L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 34/176 (19%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI 152
           +IP +I   A+  +LDL  NKLS      F  LT LR++ L  NKL ++P   F  LK++
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQ 211
             L  + N L +                         +P  +   L NL  L L  N+L+
Sbjct: 88  ETLWVTDNKLQA-------------------------LPIGVFDQLVNLAELRLDRNQLK 122

Query: 212 GSIPDS-FGDLISLKFLNLSNNNLSGAIPASL-EKLSYLENLNLSFNKLEGEIPRG 265
            S+P   F  L  L +L+L  N L  ++P  + +KL+ L+ L L  N+L+  +P G
Sbjct: 123 -SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEG 175

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 38/222 (17%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELY 106
            P++      +   NL    +      T ++L  +  +   ++ ++ S+   I +L  + 
Sbjct: 13  FPDDAF--AETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVR 66

Query: 107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTSP 165
            L L GNKL   + A    LT+L  + L  N+L S+P   F  L ++  L    N L S 
Sbjct: 67  YLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS- 123

Query: 166 LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS-FGDLISL 224
           LP                    GV       L NL YL L +N+LQ S+P   F  L +L
Sbjct: 124 LP-------------------DGVFDK----LTNLTYLNLAHNQLQ-SLPKGVFDKLTNL 159

Query: 225 KFLNLSNNNLSGAIPASL-EKLSYLENLNLSFNKLEGEIPRG 265
             L+LS N L  ++P  + +KL+ L++L L  N+L+  +P G
Sbjct: 160 TELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDG 199

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 62/205 (30%), Positives = 83/205 (40%), Gaps = 42/205 (20%)

Query: 53  NLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIP--DDICHLAELYRLDL 110
            L +   +    + +     I    L  ++ L L  NKL   I        L  L  L L
Sbjct: 39  ELNSIDQIIANNSDIKSVQGI--QYLPNVRYLALGGNKLH-DISALK---ELTNLTYLIL 92

Query: 111 DGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPL 168
            GN+L  SLP   F  LT+L+ + L  N+L S+P   F  L ++  LN + N L S LP 
Sbjct: 93  TGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LP- 149

Query: 169 EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS-FGDLISLKFL 227
                              GV       L NL  L L YN+LQ S+P+  F  L  LK L
Sbjct: 150 ------------------KGVFDK----LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186

Query: 228 NLSNNNLSGAIP----ASLEKLSYL 248
            L  N L  ++P      L  L Y+
Sbjct: 187 RLYQNQLK-SVPDGVFDRLTSLQYI 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 17/146 (11%)

Query: 118 SLPA-CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
             P   F+         L    +T    T   L  I  +  +++ + S     I  L  +
Sbjct: 12  IFPDDAFAETIKAN---LKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYLPNV 65

Query: 177 IGIDFSMNNFSGVIPTEIG---GLKNLEYLFLGYNRLQGSIPDS-FGDLISLKFLNLSNN 232
             +    N        +I     L NL YL L  N+LQ S+P+  F  L +LK L L  N
Sbjct: 66  RYLALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119

Query: 233 NLSGAIPASLEKLSYLENLNLSFNKL 258
            L        +KL+ L  LNL+ N+L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQL 145

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 93.7 bits (233), Expect = 3e-21
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 7/216 (3%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAEL 105
           IP ++    N+  +     KL        S    L+ + +  N +   I  D+  +L +L
Sbjct: 24  IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 106 YRLDL-DGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLT 163
           + + +   N L    P  F NL +L+ + + +  +  +P +   +    + L+   N   
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 164 SPLPLEI--GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
             +      G     + +  + N    +  +   G +  E      N L+    D F   
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 222 ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNK 257
                L++S   +       LE L  L   +    K
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 8e-17
 Identities = 48/259 (18%), Positives = 84/259 (32%), Gaps = 57/259 (22%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S    L  I +S N +  ++      NL   L + R+   N        +  +       
Sbjct: 51  SGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKAN-------NLLYIN------ 96

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLP 120
                     P     L  LQ L + +  ++  +PD    H  +   LD+  N    ++ 
Sbjct: 97  ----------PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 121 A-CFSNLTS-LRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
              F  L+    I+ L  N +  +  + +N   +  LN S N                  
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN------------------ 187

Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISLKFLNLSNNNLSGA 237
                NN   +      G      L +   R+  S+P     +L  L+  +  N      
Sbjct: 188 -----NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---K 238

Query: 238 IPASLEKLSYLENLNLSFN 256
           +P +LEKL  L   +L++ 
Sbjct: 239 LP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 6e-11
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 128 SLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFS 187
           S R+     +K+T +P      ++ + L F    L             L  I+ S N+  
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 188 GVIPTEI-GGLKNLEYLFL-GYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKL 245
            VI  ++   L  L  + +   N L    P++F +L +L++L +SN  +           
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 246 SYLENLNLSFNKLEGEIPRGGSFGNFSAES 275
                L++  N     I R  SF   S ES
Sbjct: 128 LQKVLLDIQDNINIHTIER-NSFVGLSFES 156

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEE-ISNLT-NSTI 59
            N  +L  + +SN  +  +     + +L   L D +  N NI   I       L+  S I
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ-DNINIHT-IERNSFVGLSFESVI 158

Query: 60  VNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGNKLSGS 118
           + L  N +        +  Q  +    ++N LE  +P+D+    +    LD+   ++  S
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-S 216

Query: 119 LPA-CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNF 161
           LP+    NL  LR  S     L  +P T   L  ++  + +   
Sbjct: 217 LPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEASLTYPS 257

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 93.0 bits (232), Expect = 5e-21
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 332 RGKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVK 391
                +  ++  +         ++L  AT+ F    LIG G FG VYK  L D  +VA+K
Sbjct: 10  NSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69

Query: 392 VFNLQCGRAFESFDVECEMMKNIRHRNLIKILHG 425
               +  +  E F+ E E +   RH +L+  L G
Sbjct: 70  RRTPESSQGIEEFETEIETLSFCRHPHLVS-LIG 102

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.0 bits (224), Expect = 5e-21
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 11/190 (5%)

Query: 73  ITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIV 132
           I  S  +      L  +            +  L  + L    ++  L        +++ +
Sbjct: 17  IPDSTFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDL 71

Query: 133 SLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP 191
           ++ +   T+  P++   L ++  L      +TS     +  L  L  +D S +     I 
Sbjct: 72  TINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 192 TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENL 251
           T+I  L  +  + L YN     I      L  LK LN+  + +       +E    L  L
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQL 186

Query: 252 NLSFNKLEGE 261
                 + G+
Sbjct: 187 YAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 11/188 (5%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S  K+     L  +    I    +   ++ SL    + N N++      I    N   + 
Sbjct: 20  STFKAYLNGLLGQSSTANI----TEAQMN-SLTYITLANINVTD--LTGIEYAHNIKDLT 72

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           +         P  +S L  L+ L +    +      ++  L  L  LD+  +    S+  
Sbjct: 73  INNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             + L  +  + L  N   +  +    L ++ +LN   + +     +E  +   L  +  
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYA 188

Query: 182 SMNNFSGV 189
                 G 
Sbjct: 189 FSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 4e-17
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 8/164 (4%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
            +   SLT I L+N  +  +   T +    H+++D  + N + +      IS L+N   +
Sbjct: 40  EAQMNSLTYITLANINVTDL---TGIEYA-HNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            + G  +       LS L  L  L +  +  + SI   I  L ++  +DL  N     + 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS 164
                L  L+ +++  + +        +   +  L   S  +  
Sbjct: 154 P-LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 7/142 (4%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +    ++  + ++N           +  LS +LE  R+   +++      +S LT+ T++
Sbjct: 62  IEYAHNIKDLTINNIHATNY---NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
           ++  +  + SI   ++ L K+  + L  N     I   +  L EL  L++  + +     
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG 176

Query: 121 ACFSNLTSLRIVSLGSNKLTSV 142
               +   L  +   S  +   
Sbjct: 177 --IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 148 NLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 207
             K  LN     +   +    ++ +L  +     +  N + +  T I    N++ L +  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 208 NRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
                  P     L +L+ L +   +++     +L  L+ L  L++S +  +  I 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.0 bits (218), Expect = 2e-19
 Identities = 51/250 (20%), Positives = 88/250 (35%), Gaps = 22/250 (8%)

Query: 30  SHSLEDF-RMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKL---QKLQGLG 85
             SLE   +  +     G   +I    +   + +   ++   I     ++     LQ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 86  LEDNKLEGSIPDDI--CHLAELYRLDLDGNKLSG---SLPACFSNL-TSLRIVSLGSNKL 139
           LE+ ++ G+ P  +      +L  L+L     +     L      L   L+++S+     
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 140 TSVPLTFW-NLKDILNLNFSSNFLTSPLPLE-------IGNLKVLIGIDFSMNNFSGVIP 191
            +           +  L+ S N       L           L+VL   +  M   SGV  
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 192 TEIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLEN 250
                   L+ L L +N L+ +    S      L  LNLS   L   +P  L   + L  
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSV 278

Query: 251 LNLSFNKLEG 260
           L+LS+N+L+ 
Sbjct: 279 LDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 6e-18
 Identities = 43/263 (16%), Positives = 72/263 (27%), Gaps = 50/263 (19%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
               L  + L N  + G  P   +      L    + N + +      ++ L        
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQ------ 145

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP-- 120
                             L+ L +          + +     L  LDL  N   G     
Sbjct: 146 -------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 121 --ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIG 178
              C     +L++++L +  + +       L                          L G
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSAL--------------------AAARVQLQG 232

Query: 179 IDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGA 237
           +D S N+               L  L L +  L+  +P        L  L+LS N L   
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDR- 288

Query: 238 IPASLEKLSYLENLNLSFNKLEG 260
            P+  E L  + NL+L  N    
Sbjct: 289 NPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 42/243 (17%), Positives = 69/243 (28%), Gaps = 26/243 (10%)

Query: 41  CNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC 100
           CN S   P+  S        ++       S+   L ++         D + +     DI 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRV---------DTEADLGQFTDII 65

Query: 101 HLAELYRLDLDGNKLSGSLPAC------FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILN 154
               L RL +   ++   +          S L  L + +L        PL      D+  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 155 LNFSSNFLTSPLP----LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 210
           LN  +    +       L+      L  +  +  +       ++     L  L L  N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 211 QGSIP----DSFGDLISLKFLNLSNNN---LSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
            G              +L+ L L N      SG   A       L+ L+LS N L     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 264 RGG 266
              
Sbjct: 246 APS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 14/186 (7%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
             +   L L  +S    D  L +     L   L+   +   +      E++      + +
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQ-QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 61  NLGGNKLNGSIPITLS----KLQKLQGLGLEDNKLE---GSIPDDICHLAELYRLDLDGN 113
           +L  N   G   +  +    K   LQ L L +  +E   G          +L  LDL  N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 114 KLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTS-PLPLEI 170
            L  +  A      + L  ++L    L  VP      L     L+ S N L   P P E+
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDRNPSPDEL 295

Query: 171 GNLKVL 176
             +  L
Sbjct: 296 PQVGNL 301

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 16/170 (9%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGI-------PEEISNLTNS 57
             L ++ ++            V     +L    + +    G         P +   L   
Sbjct: 149 PGLKVLSIAQAHSLNF-SCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 58  TIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGNKLS 116
            + N G    +G      +   +LQGL L  N L  +     C   ++L  L+L    L 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 117 GSLPAC-FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSP 165
             +P    + L+ L    L  N+L   P     L  + NL+   N     
Sbjct: 267 -QVPKGLPAKLSVL---DLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.3 bits (214), Expect = 6e-19
 Identities = 46/251 (18%), Positives = 89/251 (35%), Gaps = 19/251 (7%)

Query: 8   TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKL 67
           +       P+  I         +       +   +++       + L +   +    + +
Sbjct: 5   SETITVPTPIKQIFS---DDAFAE-TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI 58

Query: 68  NGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLT 127
             S+   +  L  +  L L  NKL   I   + +L  L  L LD NK+   L +   +L 
Sbjct: 59  K-SVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLK 112

Query: 128 SLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFS 187
            L+ +SL  N ++ +     +L  + +L   +N +T    L    L  L  +    N  S
Sbjct: 113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS 169

Query: 188 GVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSY 247
            ++P  + GL  L+ L+L  N +   +  +   L +L  L L +             L  
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 248 LENLNLSFNKL 258
              +  +   L
Sbjct: 226 PNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 41/258 (15%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +   S+  I  +N+ +  +                            + I  L N T + 
Sbjct: 43  NELNSIDQIIANNSDIKSV----------------------------QGIQYLPNVTKLF 74

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L GNKL    P  L+ L+ L  L L++NK++  +   +  L +L  L L+ N +S  +  
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING 129

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
              +L  L  + LG+NK+T +      L  +  L+   N ++  +PL    L  L  +  
Sbjct: 130 -LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYL 185

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
           S N+ S +    + GLKNL+ L L          +   +L+    +  ++ +L    P  
Sbjct: 186 SKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEI 241

Query: 242 LEKLSYLENLNLSFNKLE 259
           +      E  N+ ++  E
Sbjct: 242 ISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 13/185 (7%)

Query: 75  LSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSL 134
                +     L+   +  ++      L  + ++  + + +  S+      L ++  + L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 75

Query: 135 GSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI 194
             NKLT +     NLK++  L    N +     L+  +LK L  +    N  S +    +
Sbjct: 76  NGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISDING--L 130

Query: 195 GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLS 254
             L  LE L+LG N++  +       L  L  L+L +N +S  +P  L  L+ L+NL LS
Sbjct: 131 VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186

Query: 255 FNKLE 259
            N + 
Sbjct: 187 KNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSH--SLEDFRMYNCNISGGIPEEISNLTNST 58
           + + K L  + L +N +      + +  L H   LE   + N  I+      +S LT   
Sbjct: 108 LKDLKKLKSLSLEHNGI------SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLD 159

Query: 59  IVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS 118
            ++L  N+++  I   L+ L KLQ L L  N +   +   +  L  L  L+L   +    
Sbjct: 160 TLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNK 215

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS 164
                SNL     V      L + P    +  D    N   +    
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWHLPEF 260

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.1 bits (208), Expect = 8e-18
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 40/181 (22%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPA--CFSNLTSLRIVSLGSNKLTSVP-LTFWNLK 150
           ++P  +   +    LDL  N LS  L A    + LT+L  + L  N L  +    F  + 
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 151 DILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNR 209
           ++  L+ SSN L +                         +   +   L+ LE L L  N 
Sbjct: 89  NLRYLDLSSNHLHT-------------------------LDEFLFSDLQALEVLLLYNNH 123

Query: 210 LQGSIP-DSFGDLISLKFLNLSNNNLSGAIPA----SLEKLSYLENLNLSFNKLEGEIPR 264
           +   +  ++F D+  L+ L LS N +S   P        KL  L  L+LS NKL+ ++P 
Sbjct: 124 IV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL 180

Query: 265 G 265
            
Sbjct: 181 T 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.7 bits (186), Expect = 4e-15
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 12/171 (7%)

Query: 24  TSV-GNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIVNLGGNKLNGSIPI-TLSKLQK 80
            +V  +L        + + N+S    E   + LTN   + L  N LN  I       +  
Sbjct: 31  PNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89

Query: 81  LQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNK 138
           L+ L L  N L  ++ + +   L  L  L L  N +   +    F ++  L+ + L  N+
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 139 LTSVPL-TFWN---LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNN 185
           ++  P+    +   L  ++ L+ SSN L      ++  L   +     ++N
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 15/165 (9%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIVNLGG 64
              L+ LS+N L  +  + +   L++ L    + + +++  I  E    + N   ++L  
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTN-LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 65  NKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLPA- 121
           N L+ ++     S LQ L+ L L +N +   +  +    +A+L +L L  N++S   P  
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 122 ---CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI--LNLNFSSN 160
                + L  L ++ L SNKL  +PL     L       L   +N
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 13/164 (7%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIVNLG 63
            +L  + LS+N L+ I    +   +  +L    + + ++   + E + S+L    ++ L 
Sbjct: 64  TNLHSLLLSHNHLNFI-SSEAFVPVP-NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 64  GNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDI----CHLAELYRLDLDGNKLSGS 118
            N +   +       + +LQ L L  N++    P ++      L +L  LDL  NKL   
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 119 LPACFSNLTSL--RIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
                  L +     + L +N L      +           SS 
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSV 222

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 16/211 (7%)

Query: 49  EEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL 108
                L N+   NLG   +  +  ++  +L  +Q    +++ ++ S+   +     L  L
Sbjct: 13  FPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLP 167
            L  N++S  L     +LT L  +S+  N+L ++  +    L     L   +N L     
Sbjct: 69  HLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRDTDS 123

Query: 168 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFL 227
           L   +LK L  +    N    ++   +G L  LE L L  N +  +       L  + ++
Sbjct: 124 LI--HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWI 177

Query: 228 NLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
           +L+             +L     +     + 
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 8e-14
 Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 20/248 (8%)

Query: 12  LSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSI 71
               P++ + P      L++      +   +++         L+     N   + +  S+
Sbjct: 4   QRPTPINQVFP---DPGLAN-AVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SL 56

Query: 72  PITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRI 131
              +     L+ L L  N++   +   +  L +L  L ++ N+L        + L+ L  
Sbjct: 57  A-GMQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL-- 111

Query: 132 VSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP 191
             L +N+L     +  +LK++  L+  +N L S + L    L  L  +D   N  +    
Sbjct: 112 -FLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEITNTGG 167

Query: 192 TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENL 251
             +  LK + ++ L   +          +L     +   +       P  +       + 
Sbjct: 168 --LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDG 223

Query: 252 NLSFNKLE 259
            + +    
Sbjct: 224 CVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 35/188 (18%), Positives = 78/188 (41%), Gaps = 20/188 (10%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           M    +L  ++LS+N +  +   + + +L+  LE+  +    +       ++ + ++ + 
Sbjct: 59  MQFFTNLKELHLSHNQISDL---SPLKDLTK-LEELSVNRNRLK-----NLNGIPSACLS 109

Query: 61  --NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS 118
              L  N+L      +L  L+ L+ L + +NKL+ SI   +  L++L  LDL GN+++ +
Sbjct: 110 RLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNT 165

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPL-PLEIGNLKVLI 177
                + L  +  + L   K  + P+      ++   N   +     + P  I N    +
Sbjct: 166 GG--LTRLKKVNWIDLTGQKCVNEPVK--YQPELYITNTVKDPDGRWISPYYISNGGSYV 221

Query: 178 GIDFSMNN 185
                   
Sbjct: 222 DGCVLWEL 229

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.5 bits (186), Expect = 8e-16
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 29/165 (17%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI 152
            IP ++     +  + L+ N +    P  FS    LR + L +N+++ +    F  L+ +
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
            +L    N +T  LP  +               F G        L +L+ L L  N++  
Sbjct: 83  NSLVLYGNKITE-LPKSL---------------FEG--------LFSLQLLLLNANKIN- 117

Query: 213 SIP-DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
            +  D+F DL +L  L+L +N L      +   L  ++ ++L+ N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 7/121 (5%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAEL 105
           IP  +      T + L  N +    P   S  +KL+ + L +N++   +  D    L  L
Sbjct: 26  IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 106 YRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLT 163
             L L GNK++  LP   F  L SL+++ L +NK+  + +  F +L ++  L+   N L 
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 164 S 164
           +
Sbjct: 142 T 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAI 238
           I    N    + P      K L  + L  N++    PD+F  L SL  L L  N ++  +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 239 PASL-EKLSYLENLNLSFNKLEGEIPRG 265
           P SL E L  L+ L L+ NK+   +   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 30/138 (21%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S  K L  I LSNN +  + P             F                 L +   + 
Sbjct: 53  SPYKKLRRIDLSNNQISELAPDA-----------F---------------QGLRSLNSLV 86

Query: 62  LGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSL 119
           L GNK+   +P      L  LQ L L  NK+   +  D    L  L  L L  NKL    
Sbjct: 87  LYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 120 PACFSNLTSLRIVSLGSN 137
              FS L +++ + L  N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 16/89 (17%)

Query: 349 RTFSYLELFRATDEFSE------NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE 402
            +FS+ EL   T+ F E       N +G+GGFG VYK  + +   VAVK   L       
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNT-TVAVKK--LAAMVDIT 69

Query: 403 S------FDVECEMMKNIRHRNLIKILHG 425
           +      FD E ++M   +H NL++ L G
Sbjct: 70  TEELKQQFDQEIKVMAKCQHENLVE-LLG 97

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 39/212 (18%), Positives = 82/212 (38%), Gaps = 13/212 (6%)

Query: 52  SNLTNSTIVNLGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLD 109
           S   ++  + L    L  +IP    S L  +  + +  +     +      +L+++  ++
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 110 LDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDIL-NLNFSSNFLTSPL 166
           +   +    +       L  L+ + + +  L   P LT     DI   L  + N   + +
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 167 PLEI--GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP-DSFGDLIS 223
           P+    G     + +    N F+  +         L+ ++L  N+    I  D+FG + S
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 224 -LKFLNLSNNNLSGAIPA-SLEKLSYLENLNL 253
               L++S  +++ A+P+  LE L  L   N 
Sbjct: 206 GPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 38/238 (15%), Positives = 77/238 (32%), Gaps = 19/238 (7%)

Query: 4   CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLG 63
           C       ++   +        + +L  S +  ++   ++        SNL N + + + 
Sbjct: 10  CHQEEDFRVTCKDI------QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS 63

Query: 64  GNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGNKLSGSLPA 121
            +     +   +   L K+  + + + +    I  D    L  L  L +    L    P 
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122

Query: 122 C--FSNLTSLRIVSLGSN-KLTSVPL-TFWNLKDIL-NLNFSSNFLTSPLPLEIGNLKVL 176
                +     I+ +  N  +TS+P+  F  L +    L   +N  TS +     N   L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKL 181

Query: 177 IGIDFSMNNFSGVIPTEI--GGLKNLEYLFLGYNRLQGSIP-DSFGDLISLKFLNLSN 231
             +  + N +  VI  +   G       L +    +  ++P      L  L   N   
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEE--ISNLTNSTI 59
            N   +T I + N      +   ++  L   L+   ++N  +    P+   + +     I
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLK-MFPDLTKVYSTDIFFI 134

Query: 60  VNLGGNKLNGSIPI-TLSKLQK-LQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG 117
           + +  N    SIP+     L      L L +N    S+     +  +L  + L+ NK   
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 118 SLPA-CFSNLTS-LRIVSLGSNKLTSVP-LTFWNLKDILNLN 156
            +    F  + S   ++ +    +T++P     +LK+++  N
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV- 60
                L  + + N  L      T V +           N  ++         L N T+  
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICH--LAELYRLDLDGNKLSGS 118
            L  N    S+        KL  + L  NK    I  D      +    LD+    ++ +
Sbjct: 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-A 219

Query: 119 LPA-CFSNLTSLRIVSL 134
           LP+    +L  L   + 
Sbjct: 220 LPSKGLEHLKELIARNT 236

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 82  QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLT 140
           + L L+   L          L +L  L+LD N+L  +L A  F +LT L  + L +N+L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 141 SVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKN 199
           S+P   F +L  +  L    N L S LP                   SGV       L  
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LP-------------------SGVF----DRLTK 132

Query: 200 LEYLFLGYNRLQGSIPDS-FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
           L+ L L  N+LQ SIP   F  L +L+ L+LS N L      + ++L  L+ + L  N
Sbjct: 133 LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 28/178 (15%)

Query: 3   NC--KSLTLI-----------YLSNNPLDGILPKTSVGNLSHSLEDFRMYNC--NISGGI 47
           +C  KSL  +            L +  L  +   T        L      N   N    +
Sbjct: 20  DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF-----RGLTKLTWLNLDYNQLQTL 74

Query: 48  PEEI-SNLTNSTIVNLGGNKLNGSIPITL-SKLQKLQGLGLEDNKLEGSIPDDIC-HLAE 104
              +  +LT    + L  N+L  S+P+ +   L +L  L L  N+L+ S+P  +   L +
Sbjct: 75  SAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 105 LYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           L  L L+ N+L  S+PA  F  LT+L+ +SL +N+L SVP   F  L  +  +    N
Sbjct: 133 LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 43/174 (24%), Positives = 66/174 (37%), Gaps = 54/174 (31%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDIL 153
           S+P  I   A+  +LDL    L+    A F  LT L  ++L  N+L ++           
Sbjct: 28  SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---------- 75

Query: 154 NLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 213
                                            +GV       L  L  L L  N+L  S
Sbjct: 76  ---------------------------------AGVF----DDLTELGTLGLANNQLA-S 97

Query: 214 IPDS-FGDLISLKFLNLSNNNLSGAIPASL-EKLSYLENLNLSFNKLEGEIPRG 265
           +P   F  L  L  L L  N L  ++P+ + ++L+ L+ L L+ N+L+  IP G
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAG 149

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.3 bits (187), Expect = 6e-15
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
                      +  ++L    L   K    +  ++    EL  L+ +      ++     
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 125 NLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN 184
            L  L          ++  L   +      L+   +       +       +  +  +  
Sbjct: 394 ALDPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 185 NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEK 244
           + + +    +  L  + +L L +NRL+ ++P +   L  L+ L  S+N L   +   +  
Sbjct: 452 DLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN 506

Query: 245 LSYLENLNLSFNKLE 259
           L  L+ L L  N+L+
Sbjct: 507 LPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.9 bits (186), Expect = 7e-15
 Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 21/218 (9%)

Query: 48  PEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYR 107
             + +         L   K    +   L   ++LQ L  E+     +I   I  +  L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDP 397

Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLG------SNKLTSVPLTFWNLKDILNLNFSSNF 161
           L  +   L       FS L ++  +         S  L    +      D+  L+ +   
Sbjct: 398 LLYEKETLQY-----FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
           LT    LE   L ++  +D S N     +P  +  L+ LE L    N L+ ++     +L
Sbjct: 453 LTVLCHLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANL 507

Query: 222 ISLKFLNLSNNNLSG-AIPASLEKLSYLENLNLSFNKL 258
             L+ L L NN L   A    L     L  LNL  N L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.5 bits (177), Expect = 1e-13
 Identities = 42/252 (16%), Positives = 72/252 (28%), Gaps = 37/252 (14%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +  + L    LS      +  +         LE    +       +   +  L       
Sbjct: 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
              + L    P+  + L  L+   L +N +           A++  L L    L+  L  
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVL------KMEYADVRVLHLAHKDLT-VLCH 458

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
               L  +  + L  N+L ++P     L+ +  L  S N L + +               
Sbjct: 459 -LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-------------- 502

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD--SFGDLISLKFLNLSNNNLSGAIP 239
                       +  L  L+ L L  NRLQ              L  LNL  N+L     
Sbjct: 503 -----------GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

Query: 240 ASLEKLSYLENL 251
                   L ++
Sbjct: 551 IQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 38/137 (27%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +     +T + LS+N L                             +P  ++ L    ++
Sbjct: 459 LEQLLLVTHLDLSHNRLR---------------------------ALPPALAALRCLEVL 491

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPD--DICHLAELYRLDLDGNKLS-- 116
               N L  ++   ++ L +LQ L L +N+L+        +     L  L+L GN L   
Sbjct: 492 QASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 117 ----GSLPACFSNLTSL 129
                 L     +++S+
Sbjct: 549 EGIQERLAEMLPSVSSI 565

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 351 FSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEM 410
                L+  +       +  +G FG V+KA+L +   VAVK+F +Q  ++++  + E   
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNE-YVAVKIFPIQDKQSWQ-NEYEVYS 71

Query: 411 MKNIRHRNLIKIL 423
           +  ++H N+++ +
Sbjct: 72  LPGMKHENILQFI 84

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 30/166 (18%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKD 151
            IP+ I        L L+ N+ +       F  L  LR ++  +NK+T +    F     
Sbjct: 25  KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 152 ILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 211
           +  +  +SN L + +  ++               F G        L++L+ L L  NR+ 
Sbjct: 83  VNEILLTSNRLEN-VQHKM---------------FKG--------LESLKTLMLRSNRIT 118

Query: 212 GSIP-DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
             +  DSF  L S++ L+L +N ++   P + + L  L  LNL  N
Sbjct: 119 -CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 131 IVSLGSNKLTSVPLTFWNL-KDILNLNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSG 188
            V   + KL  +P    ++ +    L  ++N  T      I   L  L  I+FS N  + 
Sbjct: 15  TVDCSNQKLNKIPE---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71

Query: 189 VIPTEIGGLKNLEYLFLGYNRLQGSIPDS-FGDLISLKFLNLSNNNLSGAIPA-SLEKLS 246
           +      G   +  + L  NRL+ ++    F  L SLK L L +N ++  +   S   LS
Sbjct: 72  IEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS 129

Query: 247 YLENLNLSFNKLEGEIPRG 265
            +  L+L  N++   +  G
Sbjct: 130 SVRLLSLYDNQIT-TVAPG 147

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLTNSTIV 60
                L  I  SNN +  I      G  S  + +  + +  +   +  ++   L +   +
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEG-ASG-VNEILLTSNRLEN-VQHKMFKGLESLKTL 110

Query: 61  NLGGNKLNGSIPI-TLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLDGN 113
            L  N++   +   +   L  ++ L L DN++  ++       L  L  L+L  N
Sbjct: 111 MLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 12/118 (10%)

Query: 46  GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAE 104
           GIP       + T + L GN+    +P  LS  + L  + L +N++  ++ +    ++ +
Sbjct: 28  GIP------RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 105 LYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           L  L L  N+L   +P   F  L SLR++SL  N ++ VP   F +L  + +L   +N
Sbjct: 80  LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 52/153 (33%)

Query: 82  QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLT 140
             L L+ N+    +P ++ +   L  +DL  N++S +L    FSN+T L  + L  N+L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 141 SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNL 200
            +P                                                    GLK+L
Sbjct: 92  CIP-------------------------------------------PRT----FDGLKSL 104

Query: 201 EYLFLGYNRLQGSIPD-SFGDLISLKFLNLSNN 232
             L L  N +   +P+ +F DL +L  L +  N
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL-EKLSYL 248
           +P E+   K+L  + L  NR+      SF ++  L  L LS N L   IP    + L  L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSL 104

Query: 249 ENLNLSFNKLEGEIPRG 265
             L+L  N +   +P G
Sbjct: 105 RLLSLHGNDIS-VVPEG 120

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLE 249
           IP ++        L+L  N+    +P    +   L  ++LSNN +S     S   ++ L 
Sbjct: 29  IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 250 NLNLSFNKLEGEIPRG 265
            L LS+N+L   IP  
Sbjct: 82  TLILSYNRLR-CIPPR 96

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 46  GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAE 104
           GIP      TN+ I+ L  N++    P     L  L+ L L  N+L  ++P  +   L +
Sbjct: 37  GIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 105 LYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLT 163
           L  LDL  N+L+  LP+  F  L  L+ + +  NKLT +P     L  + +L    N L 
Sbjct: 90  LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

Query: 164 S 164
           S
Sbjct: 149 S 149

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI 152
           S+P  I        L L  N+++   P  F +L +L+ + LGSN+L ++P+  F +L  +
Sbjct: 33  SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
             L+  +N LT  LP                   S V       L +L+ LF+  N+L  
Sbjct: 91  TVLDLGTNQLTV-LP-------------------SAVF----DRLVHLKELFMCCNKLT- 125

Query: 213 SIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
            +P     L  L  L L  N L      + ++LS L +  L  N
Sbjct: 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 53  NLTNSTIVNLGGNKLNGSIPITL-SKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDL 110
           +L N   + LG N+L  ++P+ +   L +L  L L  N+L   +P  +   L  L  L +
Sbjct: 62  SLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119

Query: 111 DGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
             NKL+  LP     LT L  ++L  N+L S+P   F  L  + +     N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
               N  + + P     L NL+ L+LG N+L       F  L  L  L+L  N L+  +P
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLP 104

Query: 240 ASL-EKLSYLENLNLSFNKLEGEIPRG 265
           +++ ++L +L+ L +  NKL  E+PRG
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRG 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL-EKLSYL 248
           IPT      N + L+L  N++    P  F  LI+LK L L +N L  A+P  + + L+ L
Sbjct: 38  IPT------NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 249 ENLNLSFNKLE 259
             L+L  N+L 
Sbjct: 91  TVLDLGTNQLT 101

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 71.4 bits (175), Expect = 9e-14
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 351 FSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEM 410
            +  E     D      LIG+G +G+VYK  L +R  VAVKVF+       ++F  E  +
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDER-PVAVKVFSFA---NRQNFINEKNI 58

Query: 411 MK--NIRHRNLIKIL 423
            +   + H N+ + +
Sbjct: 59  YRVPLMEHDNIARFI 73

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 46  GIPEEISNLTNSTIVNLGGNKLNGSIPIT--LSKLQKLQGLGLEDNKLEGSIPDDIC-HL 102
            IP       ++T + L  N+L   I       +L  L  L L+ N+L   I  +     
Sbjct: 26  DIP------LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA 77

Query: 103 AELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           + +  L L  NK+   +    F  L  L+ ++L  N+++ V   +F +L  + +LN +SN
Sbjct: 78  SHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 61/183 (33%)

Query: 56  NSTIVNLGGNKLN---GSIPITLSKLQKLQGLGLEDNKLEGSIPDDI-CHLAELYRLDLD 111
             T V+  G  L      IP+  ++L       L DN+L     D +   L  L +L+L 
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELL------LNDNELGRISSDGLFGRLPHLVKLELK 62

Query: 112 GNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEI 170
            N+L+  +    F   + ++ + LG NK+  +                            
Sbjct: 63  RNQLT-GIEPNAFEGASHIQELQLGENKIKEIS--------------------------- 94

Query: 171 GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISLKFLNL 229
                           + +      GL  L+ L L  N++   +   SF  L SL  LNL
Sbjct: 95  ----------------NKM----FLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNL 133

Query: 230 SNN 232
           ++N
Sbjct: 134 ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 179 IDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDS-FGDLISLKFLNLSNNNLSG 236
           +  + N    +    + G L +L  L L  N+L   I  + F     ++ L L  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 237 AIPASL-EKLSYLENLNLSFNKLEGEIPRG 265
            I   +   L  L+ LNL  N++   +  G
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISC-VMPG 120

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 39/166 (23%), Positives = 59/166 (35%), Gaps = 54/166 (32%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPAC--FSNLTSLRIVSLGSNKLTSVPLTFWNLKD 151
            IP DI        L L+ N+L   + +   F  L  L  + L  N+LT +         
Sbjct: 22  EIPRDI--PLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIE-------- 70

Query: 152 ILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 211
                                                       G  +++ L LG N+++
Sbjct: 71  -----------------------------------PNAF----EGASHIQELQLGENKIK 91

Query: 212 GSIPD-SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
             I +  F  L  LK LNL +N +S  +P S E L+ L +LNL+ N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISLKFLNLSNNNLSGAIPASL-EKLSY 247
           IP       +   L L  N L     D  FG L  L  L L  N L+  I  +  E  S+
Sbjct: 27  IPL------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 248 LENLNLSFNKLEGEIPRG 265
           ++ L L  NK++ EI   
Sbjct: 80  IQELQLGENKIK-EISNK 96

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 11/118 (9%)

Query: 46  GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAE 104
           GIP      +++T + L  NKL         KL +L  L L  N+++ S+PD +   L +
Sbjct: 25  GIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 105 LYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           L  L L  NKL  SLP   F  LT L+ ++L +N+L SVP   F  L  +  +   +N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 27/128 (21%)

Query: 107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSP 165
           RL+L+ NKL       F  LT L  +SL  N++ S+P   F  L  +  L    N L S 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90

Query: 166 LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD-SFGDLISL 224
           LP                   +GV       L  L+ L L  N+L+ S+PD  F  L SL
Sbjct: 91  LP-------------------NGVFDK----LTQLKELALDTNQLK-SVPDGIFDRLTSL 126

Query: 225 KFLNLSNN 232
           + + L  N
Sbjct: 127 QKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 82  QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLT 140
             L LE NKL+         L +L +L L  N++  SLP   F  LT L I+ L  NKL 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 141 SVPL-TFWNLKDILNLNFSSNFLTS 164
           S+P   F  L  +  L   +N L S
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKS 114

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL-EKLSYL 248
           IP+      +   L L  N+LQ      F  L  L  L+LS N +  ++P  + +KL+ L
Sbjct: 26  IPS------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKL 78

Query: 249 ENLNLSFNKLEGEIPRG 265
             L L  NKL+  +P G
Sbjct: 79  TILYLHENKLQ-SLPNG 94

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDR-MEVAVKVFNLQCGRA-------FESFDVECEMMK 412
           +E      IGKGGFG V+K RL      VA+K   L            F+ F  E  +M 
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 413 NIRHRNLIKILHGV 426
           N+ H N++K L+G+
Sbjct: 79  NLNHPNIVK-LYGL 91

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
            + +    IG G FG+V++A      +VAVK+   Q         F  E  +MK +RH N
Sbjct: 37  CDLNIKEKIGAGSFGTVHRAEWHGS-DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPN 95

Query: 419 LIK 421
           ++ 
Sbjct: 96  IVL 98

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 11/122 (9%)

Query: 46  GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAE 104
           GIP        +T ++L  N L         +L  L  L L  NKL+ S+P+ +   L  
Sbjct: 25  GIP------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 105 LYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFL 162
           L  L+L  N+L  SLP   F  LT L+ ++L +N+L S+P   F  L  + +L    N L
Sbjct: 78  LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 163 TS 164
            S
Sbjct: 137 KS 138

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 53  NLTNSTIVNLGGNKLNGSIPITL-SKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDL 110
            LT+ T + LGGNKL  S+P  + +KL  L  L L  N+L+ S+P+ +   L +L  L L
Sbjct: 50  ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107

Query: 111 DGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           + N+L  SLP   F  LT L+ + L  N+L SVP   F  L  +  +    N
Sbjct: 108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 55/171 (32%), Positives = 73/171 (42%), Gaps = 29/171 (16%)

Query: 88  DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TF 146
            ++   S+P  I   A+   LDL+ N L       F  LTSL  + LG NKL S+P   F
Sbjct: 15  YSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72

Query: 147 WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLG 206
             L  +  LN S+N L S LP                   +GV       L  L+ L L 
Sbjct: 73  NKLTSLTYLNLSTNQLQS-LP-------------------NGVFDK----LTQLKELALN 108

Query: 207 YNRLQGSIPD-SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
            N+LQ S+PD  F  L  LK L L  N L        ++L+ L+ + L  N
Sbjct: 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 29/154 (18%)

Query: 82  QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLT 140
             L LE N L+         L  L +L L GNKL  SLP   F+ LTSL  ++L +N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 141 SVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKN 199
           S+P   F  L  +  L  ++N L S LP                    GV       L  
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQS-LP-------------------DGVFDK----LTQ 125

Query: 200 LEYLFLGYNRLQGSIPD-SFGDLISLKFLNLSNN 232
           L+ L L  N+L+ S+PD  F  L SL+++ L +N
Sbjct: 126 LKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
           D   N+   +       L +L  L+LG N+LQ      F  L SL +LNLS N L     
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93

Query: 240 ASLEKLSYLENLNLSFNKLEGEIPRG 265
              +KL+ L+ L L+ N+L+  +P G
Sbjct: 94  GVFDKLTQLKELALNTNQLQ-SLPDG 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL-EKLSYL 248
           +PT I       YL L  N L+      F +L SL  L L  N L  ++P  +  KL+ L
Sbjct: 22  VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 249 ENLNLSFNKLEGEIPRG 265
             LNLS N+L+  +P G
Sbjct: 79  TYLNLSTNQLQ-SLPNG 94

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
            + +    + +   G ++K R     ++ VKV  ++    R    F+ EC  ++   H N
Sbjct: 10  KQLNFLTKLNENHSGELWKGRWQGN-DIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPN 68

Query: 419 LIKIL 423
           ++ +L
Sbjct: 69  VLPVL 73

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRHRN 418
           ++     LIGKG FG VY  R     EVA+++ +++       ++F  E    +  RH N
Sbjct: 33  EQLEIGELIGKGRFGQVYHGRW--HGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHEN 90

Query: 419 LIK 421
           ++ 
Sbjct: 91  VVL 93

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRH 416
            E +   +IG GGFG VY+A      EVAVK           +  E+   E ++   ++H
Sbjct: 7   AELTLEEIIGIGGFGKVYRAFWIGD-EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKH 65

Query: 417 RNLIKILHGV 426
            N+I  L GV
Sbjct: 66  PNIIA-LRGV 74

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 328 RYQQRGKRPSNDANMPLVATWRTFSYLELFRATDEFSENNL-----IGKGGFGSVYKARL 382
            +      P+ +      A    F   +      +F E +L     +GKG FGSV   R 
Sbjct: 7   HHHHDYDIPTTENLYFQGAMGSAFEDRDPT----QFEERHLKFLQQLGKGNFGSVEMCRY 62

Query: 383 -----GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
                     VAVK            F+ E E++K+++H N++K   GV
Sbjct: 63  DPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK-YKGV 110

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
            + +    IG G FG+VYK +     +VAVK+ N+     +  ++F  E  +++  RH N
Sbjct: 24  GQITVGQRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 81

Query: 419 LIKILHGV 426
           ++    G 
Sbjct: 82  ILL-FMGY 88

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
            E     ++G+G FG V KA+   + +VA+K    +     ++F VE   +  + H N++
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKWRAK-DVAIKQIESE--SERKAFIVELRQLSRVNHPNIV 64

Query: 421 KIL 423
           K+ 
Sbjct: 65  KLY 67

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 12/76 (15%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL----GDRMEVAVKVFNLQCG--RAFESFDVECEM 410
               N L     +G+G FGSV +  L    G  ++VAVK   L     R  E F  E   
Sbjct: 30  VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAAC 89

Query: 411 MKNIRHRNLIKILHGV 426
           MK+  H N+I++L GV
Sbjct: 90  MKDFSHPNVIRLL-GV 104

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL-----GDRMEVAVKVFNLQCGRAFESFDVECEMM 411
           +F E +L     +GKG FGSV   R           VAVK            F+ E E++
Sbjct: 6   QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65

Query: 412 KNIRHRNLIKILHGV 426
           K+++H N++K   GV
Sbjct: 66  KSLQHDNIVK-YKGV 79

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEM--MKNIRHRN 418
            +      IGKG +G V+  +     +VAVKVF         S+  E E+     +RH N
Sbjct: 37  KQIQMVKQIGKGRYGEVWMGKWRGE-KVAVKVFFTTE---EASWFRETEIYQTVLMRHEN 92

Query: 419 LIK 421
           ++ 
Sbjct: 93  ILG 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPD-DICHLAELYRLDLDGNKLSGSLPACF 123
                     L   + L  L +E+ +    +   D+  L EL  L +  + L    P  F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 124 SNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLT 163
                L  ++L  N L S+         +  L  S N L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 94  SIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSV-PLTFWNLKD 151
                +     L  L ++  +    L       L  LR +++  + L  V P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 152 ILNLNFSSNFLTS-------PLPLEIGNL 173
           +  LN S N L S        L L+   L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 8e-08
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTE-IGGLKNLEYLFLGYNRLQGSIPDSFGDLISLK 225
              +   + L  +          +    + GL  L  L +  + L+   PD+F     L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 226 FLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL 258
            LNLS N L      +++ LS L+ L LS N L
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 2/59 (3%)

Query: 208 NRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA-SLEKLSYLENLNLSFNKLEGEIPRG 265
                          +L  L + N      +    L  L  L NL +  + L   +   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 355 ELFRATDEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQCG-RAFESFDVECE 409
            +         + +IGKG FG VY         +R++ A+K  +     +  E+F  E  
Sbjct: 15  LIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGL 74

Query: 410 MMKNIRHRNLIKILHGV 426
           +M+ + H N++  L G+
Sbjct: 75  LMRGLNHPNVLA-LIGI 90

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 355 ELFRATDEFSE---------NNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQCG-RA 400
           EL +A               N +IG+G FG VY   L    G ++  AVK  N       
Sbjct: 10  ELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE 69

Query: 401 FESFDVECEMMKNIRHRNLIKILHGV 426
              F  E  +MK+  H N++ +L G+
Sbjct: 70  VSQFLTEGIIMKDFSHPNVLSLL-GI 94

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 12/76 (15%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL----GDRMEVAVKVFNLQCG--RAFESFDVECEM 410
              E        +GKG FGSV +A+L    G  ++VAVK+           E F  E   
Sbjct: 19  LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAAC 78

Query: 411 MKNIRHRNLIKILHGV 426
           MK   H ++ K++ GV
Sbjct: 79  MKEFDHPHVAKLV-GV 93

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           +G G FG V   +   + +VAVK+   +   + + F  E + M  + H  L+K  +GV
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVK-FYGV 71

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
             +G G FG V+ A      +VAVK        + E+F  E  +MK ++H  L+K LH V
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVK-LHAV 251

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           +G G FG V+        +VAVK    Q   + ++F  E  +MK ++H+ L++ L+ V
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVR-LYAV 76

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 352 SYLELFRATD--EFSENNL-----IGKGGFGSVYKARL-----GDRMEVAVKVFNLQCGR 399
            + +L+   D   F E +L     +GKG FGSV   R           VAVK        
Sbjct: 7   HHAQLYACQDPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPD 66

Query: 400 AFESFDVECEMMKNIRHRNLIKILHGV 426
               F  E +++K +    ++K   GV
Sbjct: 67  QQRDFQREIQILKALHSDFIVK-YRGV 92

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEM 410
            F +  L     +G+G FG V          G    VAVK      G +    +  E ++
Sbjct: 27  VFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDI 86

Query: 411 MKNIRHRNLIKILHGV 426
           ++ + H ++IK   G 
Sbjct: 87  LRTLYHEHIIK-YKGC 101

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEM--MKNIRHRNLIK 421
             +GKG +G V++        VAVK+F+ +     +S+  E E+     +RH N++ 
Sbjct: 14  ECVGKGRYGEVWRGSWQGE-NVAVKIFSSR---DEKSWFRETELYNTVMLRHENILG 66

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           +G G FG V   +   + +VA+K+   +   + + F  E ++M N+ H  L++ L+GV
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQ-LYGV 87

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 367 NLIGKGGFGSVYKARL----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIK 421
            +IG+G FG VY   L    G ++  AVK  N          F  E  +MK+  H N++ 
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154

Query: 422 ILHGV 426
           +L G+
Sbjct: 155 LL-GI 158

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEM 410
            F +  L     +G+G FG V   R          +VAVK    + G         E E+
Sbjct: 17  HFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEI 76

Query: 411 MKNIRHRNLIKILHGV 426
           ++N+ H N++K   G+
Sbjct: 77  LRNLYHENIVK-YKGI 91

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 38/265 (14%), Positives = 79/265 (29%), Gaps = 45/265 (16%)

Query: 32  SLEDFRMYNCNISG----GIPEEISNLTNSTIVNLGGNKLN--GSIPI--TLSKLQKLQG 83
           S+E   +    I+      +   +    +   + L GN +    +  +   ++  + L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 84  LGLEDN---KLEGSIPDDICHLAE-------LYRLDLDGNKLSG----SLPACFSNLTSL 129
               D    +++  IP+ +  L +       L+ + L  N         L    S  T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 130 RIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGV 189
             + L +N L                  +       +  +  N   L  I    N     
Sbjct: 125 EHLYLHNNGLGPQAGAK----------IARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 190 ----IPTEIGGLKNLEYLFLGYNRL-----QGSIPDSFGDLISLKFLNLSNNNLSG---- 236
                       + L  + +  N +     +  + +       LK L+L +N  +     
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 237 AIPASLEKLSYLENLNLSFNKLEGE 261
           A+  +L+    L  L L+   L   
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 55/319 (17%), Positives = 99/319 (31%), Gaps = 65/319 (20%)

Query: 1   MSNCKSLTLIYLSNNPL--DGILPKTSVGNLSHSLEDFRMYNCNISGG----IPEEISNL 54
           M+   S+    L  + +  +      +V     S+++  +    I       + E I++ 
Sbjct: 1   MAR-FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 55  TNSTIVNLGGNKLNGSIPIT----------LSKLQKLQGLGLEDNKLEGSIPDDICHLAE 104
            +  I                         L K  KL  + L DN      P     L +
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLID 116

Query: 105 -------LYRLDLDGNK--------LSGSLPACFSNL-----TSLRIVSLGSNKLTSVPL 144
                  L  L L  N         ++ +L     N        LR +  G N+L +  +
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 145 TFW-----NLKDILNLNFSSNFLTSP-----LPLEIGNLKVLIGIDFSMNNFSG----VI 190
             W     + + +  +    N +        L   +   + L  +D   N F+      +
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 191 PTEIGGLKNLEYLFLGYNRLQG----SIPDSFGDL--ISLKFLNLSNNNLSG----AIPA 240
              +    NL  L L    L      ++ D+F  L  I L+ L L  N +       +  
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296

Query: 241 SL-EKLSYLENLNLSFNKL 258
            + EK+  L  L L+ N+ 
Sbjct: 297 VIDEKMPDLLFLELNGNRF 315

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           IG G FG V+     ++ +VA+K    +   + E F  E E+M  + H  L++ L+GV
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQ-LYGV 71

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 46/307 (14%), Positives = 94/307 (30%), Gaps = 50/307 (16%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSH---SLEDFRMYNCNIS----GGIPEEISNL 54
               +L  + L +N L  +     +  L      ++   + NC ++    G +   +  L
Sbjct: 53  RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112

Query: 55  TNSTIVNLGGNKLNGSIPITLSKLQ-----KLQGLGLEDNKLEGSIPDDICHLAE----- 104
                ++L  N L  +    L +       +L+ L LE   L          LA      
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLASVLRAK 169

Query: 105 --LYRLDLDGNKLSGS-----LPACFSNLTSLRIVSLGSNKLT-----SVPLTFWNLKDI 152
                L +  N ++ +           +   L  + L S  +T      +     +   +
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 153 LNLNFSSNFLTSP-----LPLEIGNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYL 203
             L   SN L         P  +     L  +       +      +   +   ++L+ L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 204 FLGYNRLQGSIPDSFGDLI-----SLKFLNLSNNNLSG----AIPASLEKLSYLENLNLS 254
            L  N L         + +      L+ L + + + +        + L +  +L  L +S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 255 FNKLEGE 261
            N+LE  
Sbjct: 350 NNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 54/313 (17%), Positives = 103/313 (32%), Gaps = 64/313 (20%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSH-------SLEDFRMYNCNIS----GGIPE 49
           +    +L  ++LS+N L        +  L          LE  ++  C++S      +  
Sbjct: 109 LRTLPTLQELHLSDNLLGD----AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 50  EISNLTNSTIVNLGGNKLNGSIPITLSKLQK-----LQGLGLEDNKLEGSIPDDICHLAE 104
            +    +   + +  N +N +    L +  K     L+ L LE   +     D+   L  
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDLCG 221

Query: 105 -------LYRLDLDGNKLSGS-----LPACFSNLTSLRIVSLGSNKLTSVPLTF-----W 147
                  L  L L  NKL         P      + LR + +    +T+           
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 148 NLKDILNLNFSSN--------FLTSPLPLEIGNLKVLIGIDFSMNNFSGV----IPTEIG 195
             + +  L+ + N         L   L      L+ L        +F+        + + 
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL---WVKSCSFTAACCSHFSSVLA 338

Query: 196 GLKNLEYLFLGYNRLQGSIPDSFGDLI-----SLKFLNLSNNNLS----GAIPASLEKLS 246
             + L  L +  NRL+ +        +      L+ L L++ ++S     ++ A+L    
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398

Query: 247 YLENLNLSFNKLE 259
            L  L+LS N L 
Sbjct: 399 SLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 52/301 (17%), Positives = 89/301 (29%), Gaps = 66/301 (21%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
                   + +SNN ++       V  L   L+                  +      + 
Sbjct: 167 RAKPDFKELTVSNNDINE----AGVRVLCQGLK-----------------DSPCQLEALK 205

Query: 62  LGGNKLN----GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAE--------LYRLD 109
           L    +       +   ++    L+ L L  NKL       +  L          L  L 
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV---GMAELCPGLLHPSSRLRTLW 262

Query: 110 LDGNKLS----GSLPACFSNLTSLRIVSLGSNKLT-------SVPLTFWNLKDILNLNFS 158
           +    ++    G L        SL+ +SL  N+L           L     + + +L   
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ-LESLWVK 321

Query: 159 SNFLTS----PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG-GLKN----LEYLFLGYNR 209
           S   T+         +   + L+ +  S N        E+  GL      L  L+L    
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 210 LQ----GSIPDSFGDLISLKFLNLSNNNLSG----AIPASLEKLSY-LENLNLSFNKLEG 260
           +      S+  +     SL+ L+LSNN L       +  S+ +    LE L L       
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

Query: 261 E 261
           E
Sbjct: 442 E 442

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN 418
            + +     +G G FG VYKA+        A KV   +     E + VE E++    H  
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY 77

Query: 419 LIK 421
           ++K
Sbjct: 78  IVK 80

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 12/76 (15%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEM 410
            F E  L     +G G FG+V+K          ++ V +KV   + G ++F++       
Sbjct: 9   IFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLA 68

Query: 411 MKNIRHRNLIKILHGV 426
           + ++ H ++++ L G+
Sbjct: 69  IGSLDHAHIVR-LLGL 83

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
             IGKG FG V         +VAVK   ++     ++F  E  +M  +RH NL++ L GV
Sbjct: 27  QTIGKGEFGDVMLGDYRGN-KVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQ-LLGV 82

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
             IGKG FG V++ +     EVAVK+F+ +  R++   + E      +RH N++ 
Sbjct: 48  ESIGKGRFGEVWRGKWRGE-EVAVKIFSSREERSWF-REAEIYQTVMLRHENILG 100

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 74/491 (15%), Positives = 144/491 (29%), Gaps = 147/491 (29%)

Query: 1   MSNC-KS-LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMY-----NCNISGGIPEEISN 53
           +    K+ + L    +  +   +              F+++     NCN    + E +  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMD-------------FKIFWLNLKNCNSPETVLEMLQK 204

Query: 54  LTNSTIVNLGGNKLNG-SIPITLSKLQ-KLQGLGLEDNKLEGS--IPDDICHLAELYRLD 109
           L      N      +  +I + +  +Q +L+ L L+    E    +  ++ +       +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 110 LDGNKLSGSLPACFSNLTSLRIVS----LGSNKLTSVPLTF--WNLKDILNLNFSSNFLT 163
           L           C   LT+ R       L +   T + L      L      +    +L 
Sbjct: 264 LS----------CKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 164 SP---LPLEI--GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 218
                LP E+   N + L     S+   +  I   +    N +++    ++L   I  S 
Sbjct: 313 CRPQDLPREVLTTNPRRL-----SI--IAESIRDGLATWDNWKHV--NCDKLTTIIESSL 363

Query: 219 GDLIS--LK--FLNLS----NNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
             L     +  F  LS    + +    IP  L  LS +      +  +            
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH----IPTIL--LSLI------WFDVIKSDVM------ 405

Query: 271 FSAESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVIL---LIL 327
                     L+      Q      SI        + L + + L   +     L   ++ 
Sbjct: 406 VVVNKLHKYSLV----EKQPKESTISIPS------IYLELKVKLENEYA----LHRSIVD 451

Query: 328 RYQQRGKRPSNDANMPLVAT-WRTFSYL-------------ELFRA--TD-EFSENNLIG 370
            Y       S+D   P +   +  +S++              LFR    D  F E  +  
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 371 KG----GFGSV---------YKARLGD------RMEVAVKVFNLQCGRAFESFDVECEMM 411
                   GS+         YK  + D      R+  A+  F  +            E +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE----------ENL 559

Query: 412 KNIRHRNLIKI 422
              ++ +L++I
Sbjct: 560 ICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 67/473 (14%), Positives = 143/473 (30%), Gaps = 125/473 (26%)

Query: 29  LSHSLEDF-RMYNCNISGGIPEEISNLTNST----IVNLGGNKLNGS---IPITLSK--- 77
           LS   + F   ++C     + +   ++ +      I+    + ++G+       LSK   
Sbjct: 22  LSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSKQEE 77

Query: 78  -LQKLQGLGLEDN--------KLEGSIPDDICHLAELYRLDLDGN------------KLS 116
            +QK     L  N        K E   P  +  +    R  L  +            +  
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 117 GSLPACFSNLTSLRIVSL----GSNKLTSVPLT-----------------FWNLKDILNL 155
             L      L   + V +    GS K  +  +                  FW       L
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGK--TW-VALDVCLSYKVQCKMDFKIFW-------L 187

Query: 156 NFSSNFLTSPLPLEIGNLKVLIGIDF-SMNNFSGVIPTEIGGLKN-LEYLFL--GYNR-L 210
           N  +      +   +  L   I  ++ S ++ S  I   I  ++  L  L     Y   L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 211 -------QGSIPDSFGDLISLKFLNLSNN-NLSGAIPASLEKLSYLENLNLSFNKLEGEI 262
                       ++F   +S K L  +    ++  + A+      L++ +++    E + 
Sbjct: 248 LVLLNVQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK- 304

Query: 263 PRGGSFGNFSAESFEG--NELLCGSPNLQVPPCKTSIHH--TSWKNSLLLRIVLPLSTTF 318
                   +     +    E+L  +P  ++     SI     +W N   +     L+T  
Sbjct: 305 ---SLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCD-KLTTI- 358

Query: 319 MIVVILLIL-------RYQQRGKRPSNDANMP---LVATWRTFSYLELFRATDEFSENNL 368
            I   L +L        + +    P   A++P   L   W      ++    ++  + +L
Sbjct: 359 -IESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLI 420
           + K    S     +            +         +++ ++      HR+++
Sbjct: 417 VEKQPKESTI--SIPS----------IY-------LELKVKLENEYALHRSIV 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 75/471 (15%), Positives = 134/471 (28%), Gaps = 154/471 (32%)

Query: 84  LGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP 143
           +  E  + +    D +    + +  + D   +     +  S      I+    + ++   
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65

Query: 144 LTFWNL------------KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP 191
             FW L            +++L +N+   FL SP+  E            SM     +  
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQ--------RQPSMMTRMYI-- 113

Query: 192 TEIGGLKNLEYLFLGYN--RLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS---LE--- 243
            +   L N   +F  YN  RLQ              +L L    L    PA    ++   
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQ-------------PYLKL-RQALLELRPAKNVLIDGVL 159

Query: 244 ---KLSYLENLNLSFNKLEGEIPRGG---SFGNFSAESFEGNELLCGSPNLQVPPCKTSI 297
              K +++        K++ ++       +  N            C SP   +       
Sbjct: 160 GSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKN------------CNSPETVLEM----- 201

Query: 298 HHTSWKNSLLLRIVLPLSTTFMIVVILLILRYQQRGKRPSNDANMPLVATWRTFSYLELF 357
                   LL +I    ++                  R  + +N+ L           L 
Sbjct: 202 -----LQKLLYQIDPNWTS------------------RSDHSSNIKLRIHSIQAELRRLL 238

Query: 358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
           ++     EN L+       V    L +       V N    +A+ +F++ C+++   R +
Sbjct: 239 KSKP--YENCLL-------V----LLN-------VQN---AKAWNAFNLSCKILLTTRFK 275

Query: 418 NLIKILHGVAVITFTVCLCLFHHSSA---SASASLVSSLT------LSRPAKGGGFRGCV 468
            +   L        T  + L HHS         SL+          L R       R   
Sbjct: 276 QVTDFLSAAT----TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 469 L-----------W----HVGVD-----FAAFVFVLEPGVE----VICFVFE 495
           +           W    HV  D       + + VLEP           VF 
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           IGKG FG V         +VAVK   ++     ++F  E  +M  +RH NL++ L GV
Sbjct: 201 IGKGEFGDVMLGDYRGN-KVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQ-LLGV 254

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN-LQCGRAFESFDVECEMMKNIRHRN 418
             +  ++++G+G   +V++ R        A+KVFN +   R  +    E E++K + H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 419 LIKILH 424
           ++K+  
Sbjct: 69  IVKLFA 74

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRN 418
           ++      IG+G FG V+  RL  D   VAVK             F  E  ++K   H N
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173

Query: 419 LIKILHGVAV 428
           +++ L GV  
Sbjct: 174 IVR-LIGVCT 182

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 361 DEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNI 414
            EF +  ++G G FG+VYK          ++ VA+K        +A +    E  +M ++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74

Query: 415 RHRNLIKILHGV 426
            + ++ + L G+
Sbjct: 75  DNPHVCR-LLGI 85

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
           +       +G+G FG V+         VA+K        + E+F  E ++MK +RH  L+
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLV 242

Query: 421 KILHGV 426
           + L+ V
Sbjct: 243 Q-LYAV 247

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 12/76 (15%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEM 410
                ++     +G+G FG V+ A         D+M VAVK        A + F  E E+
Sbjct: 11  HIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAEL 70

Query: 411 MKNIRHRNLIKILHGV 426
           + N++H +++K  +GV
Sbjct: 71  LTNLQHEHIVK-FYGV 85

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           +G G +G VY+       + VAVK    +     E F  E  +MK I+H NL++ L GV
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQ-LLGV 77

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
           +       +G+G FG V+         VA+K        + E+F  E ++MK +RH  L+
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLV 325

Query: 421 KILHGV 426
           + L+ V
Sbjct: 326 Q-LYAV 330

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 361 DEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFN---LQCGRAFESFDVECEMMKN 413
            +      +G G FG V +       G  + VAVK      L    A + F  E   M +
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77

Query: 414 IRHRNLIKILHGV 426
           + HRNLI+ L+GV
Sbjct: 78  LDHRNLIR-LYGV 89

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECE 409
           EF   NL     +G+G FG V KA             VAVK+               E  
Sbjct: 19  EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFN 78

Query: 410 MMKNIRHRNLIKILHGV 426
           ++K + H ++IK L+G 
Sbjct: 79  VLKQVNHPHVIK-LYGA 94

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 369 IGKGGFGSVYKARL--------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
           +G+G F  ++K               EV +KV +       ESF     MM  + H++L+
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75

Query: 421 KILHGV 426
              +GV
Sbjct: 76  L-NYGV 80

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 12/76 (15%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEM 410
                ++     +G+G FG V+ A         D+M VAVK        A + F  E E+
Sbjct: 37  HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL 96

Query: 411 MKNIRHRNLIKILHGV 426
           +  ++H+++++   GV
Sbjct: 97  LTMLQHQHIVRFF-GV 111

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN 418
                    IG+G  G V  AR      +VAVK+ +L+  +  E    E  +M++ +H N
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN 103

Query: 419 LIK 421
           +++
Sbjct: 104 VVE 106

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 56  NSTIVNLGGNKLN---GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG 112
           + T+VN    +L      IP         Q L L +N++    P    HL  L +L  + 
Sbjct: 13  DQTLVNCQNIRLASVPAGIPTDK------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNS 66

Query: 113 NKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           NKL+ ++P   F  LT L  + L  N L S+P   F NLK + ++   +N
Sbjct: 67  NKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 9/77 (11%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL-EKLSYL 248
           IPT      + + L+L  N++    P  F  L++L+ L  ++N L+ AIP  + +KL+ L
Sbjct: 31  IPT------DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 249 ENLNLSFNKLEGEIPRG 265
             L+L+ N L+  IPRG
Sbjct: 84  TQLDLNDNHLKS-IPRG 99

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 367 NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHG 425
           + +G G +G VY+       + VAVK    +     E F  E  +MK I+H NL++ L G
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQ-LLG 283

Query: 426 V 426
           V
Sbjct: 284 V 284

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECE 409
           E +   +     +G+G FG VY+              VA+K  N     R    F  E  
Sbjct: 21  EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEAS 80

Query: 410 MMKNIRHRNLIKILHGV 426
           +MK     ++++ L GV
Sbjct: 81  VMKEFNCHHVVR-LLGV 96

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN 418
             +++    IG+G  G+VY A  +    EVA++  NLQ     E    E  +M+  ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 419 LIK 421
           ++ 
Sbjct: 79  IVN 81

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLP 167
           + L    +  +  A ++N    R + L   K+  +      L     ++FS N +     
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--- 56

Query: 168 LE-IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLISLK 225
           L+    L+ L  +  + N    +       L +L  L L  N L      D    L SL 
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 226 FLNLSNN 232
           +L +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 49  EEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL 108
            + +N      ++L G K+   I    + L +   +   DN++   + D    L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNL 155
            ++ N++          L  L  + L +N L         L D+  L
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV-------ELGDLDPL 109

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 197 LKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
           L   + +    N ++  + D F  L  LK L ++NN +        + L  L  L L+ N
Sbjct: 41  LDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 257 KLE 259
            L 
Sbjct: 99  SLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 32/145 (22%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
            +N      + L    +        + NL  +L+ F                + +++ I 
Sbjct: 15  YTNAVRDRELDLRGYKI------PVIENLGATLDQFDAI-------------DFSDNEIR 55

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS--GS 118
            L G             L++L+ L + +N++          L +L  L L  N L   G 
Sbjct: 56  KLDG----------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 119 LPACFSNLTSLRIVSLGSNKLTSVP 143
           L    ++L SL  + +  N +T+  
Sbjct: 106 L-DPLASLKSLTYLCILRNPVTNKK 129

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 56  NSTIVNLGGNKLN---GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG 112
           + T V+  G  L      IP T       Q L L DN++    P     L +L RLDLD 
Sbjct: 10  SGTTVDCSGKSLASVPTGIPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDN 63

Query: 113 NKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
           N+L+  LPA  F  LT L  +SL  N+L S+P   F NLK + ++   +N
Sbjct: 64  NQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 9/77 (11%)

Query: 190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL-EKLSYL 248
           IPT        + L+L  N++    P  F  L  L  L+L NN L+  +PA + +KL+ L
Sbjct: 28  IPT------TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80

Query: 249 ENLNLSFNKLEGEIPRG 265
             L+L+ N+L+  IPRG
Sbjct: 81  TQLSLNDNQLKS-IPRG 96

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 341 NMPLVATWRTFSYLELFRATD---EFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQ 396
           +M   +  R+   ++L    D    F    L+G G +G VYK R +      A+KV ++ 
Sbjct: 1   SMASDSPARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT 60

Query: 397 CGRAFESFDVECEMMKNI-RHRNLIK 421
            G   E    E  M+K    HRN+  
Sbjct: 61  -GDEEEEIKQEINMLKKYSHHRNIAT 85

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN-LQCGRAFESFDVECEMMKNIRHRN 418
             +  ++++G+G   +V++ R        A+KVFN +   R  +    E E++K + H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 419 LIKILH 424
           ++K+  
Sbjct: 69  IVKLFA 74

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECE 409
           E    N+     +G G FG VY+ ++         ++VAVK     C  +    F +E  
Sbjct: 26  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 85

Query: 410 MMKNIRHRNLIKILHGV 426
           ++    H+N+++   GV
Sbjct: 86  IISKFNHQNIVR-CIGV 101

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 42/199 (21%)

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGN---KLSGSLPAC 122
           +    +     K++    L      +E  +   +  L     L L  N   K+S      
Sbjct: 16  ERKSVVATEAEKVE----LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS----- 65

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
            S + +LRI+SLG N +  +         +  L  S N + S   +E             
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE------------- 112

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQ--GSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
                         L NL  L++  N++   G I D    L  L+ L L+ N L      
Sbjct: 113 -------------KLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKE 158

Query: 241 SLEKLSYLENLNLSFNKLE 259
           +     Y   +      L+
Sbjct: 159 NNATSEYRIEVVKRLPNLK 177

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 32/170 (18%)

Query: 103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNF 161
           AE   L      +   + A  S L + + ++L +N +  +  L+   ++++  L+   N 
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNL 81

Query: 162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
           +      +I NL  +                       LE L++ YN++  S+      L
Sbjct: 82  IK-----KIENLDAV--------------------ADTLEELWISYNQIA-SL-SGIEKL 114

Query: 222 ISLKFLNLSNNNLSGAIP-ASLEKLSYLENLNLSFNKLEGEIPRGGSFGN 270
           ++L+ L +SNN ++       L  L  LE+L L+ N L  +     +   
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 23/124 (18%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPIT----LSKLQKLQGLGLEDNKLEGSIPDDICHL 102
           +   +S L     + L  N       I     LS ++ L+ L L  N ++      I +L
Sbjct: 40  MDATLSTLKACKHLALSTNN------IEKISSLSGMENLRILSLGRNLIK-----KIENL 88

Query: 103 AELYR----LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP--LTFWNLKDILNLN 156
             +      L +  N+++ SL      L +LR++ + +NK+T+         L  + +L 
Sbjct: 89  DAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 157 FSSN 160
            + N
Sbjct: 147 LAGN 150

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH 416
           R   +F E  ++G+G FG V KAR   D    A+K           +   E  ++ ++ H
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH-TEEKLSTILSEVMLLASLNH 61

Query: 417 RNLIKILH 424
           + +++   
Sbjct: 62  QYVVRYYA 69

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           +GKG FG   K         + +K           +F  E ++M+ + H N++K   GV
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLK-FIGV 75

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 361 DEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNI 414
            EF +  ++G G FG+VYK          ++ VA+K        +A +    E  +M ++
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74

Query: 415 RHRNLIKILHGV 426
            + ++ + L G+
Sbjct: 75  DNPHVCR-LLGI 85

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 369 IGKGGFGSVYKARL----GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKIL 423
           IG+G FG V++          + VA+K           E F  E   M+   H +++K L
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK-L 81

Query: 424 HGV 426
            GV
Sbjct: 82  IGV 84

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 369 IGKGGFGSVYKARL----GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKIL 423
           +G+G FG VY+       G+++ VAVK     C     E F  E  +MKN+ H +++K L
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVK-L 78

Query: 424 HGV 426
            G+
Sbjct: 79  IGI 81

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECE 409
           E+  NN+     IG+G FG V++AR            VAVK+   +        F  E  
Sbjct: 43  EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 102

Query: 410 MMKNIRHRNLIKILHGV 426
           +M    + N++K+L GV
Sbjct: 103 LMAEFDNPNIVKLL-GV 118

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 369 IGKGGFGSVYKARL---GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKI 422
           +G G FGSV +        +++VA+KV  L+ G      E    E ++M  + +  +++ 
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKV--LKQGTEKADTEEMMREAQIMHQLDNPYIVR- 400

Query: 423 LHGV 426
           L GV
Sbjct: 401 LIGV 404

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 369 IGKGGFGSVYKARL----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKIL 423
           IG G  G V   RL       + VA+K        R    F  E  +M    H N+I+ L
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR-L 115

Query: 424 HGV 426
            GV
Sbjct: 116 EGV 118

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 369 IGKGGFGSVYKARL---GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKI 422
           +G G FGSV +        +++VA+KV  L+ G      E    E ++M  + +  +++ 
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKV--LKQGTEKADTEEMMREAQIMHQLDNPYIVR- 74

Query: 423 LHGV 426
           L GV
Sbjct: 75  LIGV 78

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL-QCGRAFESFDVECEMMKNIRHRN 418
           D++    +IG G    V  A     + +VA+K  NL +C  + +    E + M    H N
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 419 LIK 421
           ++ 
Sbjct: 75  IVS 77

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 369 IGKGGFGSVYKARL---GDRMEVAVKVFNLQCG----RAFESFDVECEMMKNIRHRNLIK 421
           +G G FG+V K           VAVK+  L+         +    E  +M+ + +  +++
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKI--LKNEANDPALKDELLAEANVMQQLDNPYIVR 82

Query: 422 ILHGV 426
            + G+
Sbjct: 83  -MIGI 86

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECE 409
           E    N+     +G G FG VY+ ++         ++VAVK     C  +    F +E  
Sbjct: 67  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 126

Query: 410 MMKNIRHRNLIKILHGV 426
           ++    H+N+++   GV
Sbjct: 127 IISKFNHQNIVR-CIGV 142

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 369 IGKGGFGSVYKARL----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKIL 423
           +G G FG V   RL       + VA+K   +    +    F  E  +M    H N+I+ L
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIR-L 111

Query: 424 HGV 426
            GV
Sbjct: 112 EGV 114

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL----GDRMEVAVKVFNLQC-GRAFESFDVECEMM 411
           E     +     IG+G FG V++          M VA+K           E F  E   M
Sbjct: 386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTM 445

Query: 412 KNIRHRNLIKILHGV 426
           +   H +++K L GV
Sbjct: 446 RQFDHPHIVK-LIGV 459

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH 416
           R   +F E  LIG GGFG V+KA+   D     +K       +A      E + +  + H
Sbjct: 8   RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLDH 63

Query: 417 RNLIK 421
            N++ 
Sbjct: 64  VNIVH 68

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILH 424
            +G+GGF  V     L D    A+K       +  E    E +M +   H N+++++ 
Sbjct: 36  KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVA 93

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFD---VECEMMKNIR 415
              FS+   IG G FG+VY AR + +   VA+K  +    ++ E +     E   ++ +R
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 112

Query: 416 HRNLIK 421
           H N I+
Sbjct: 113 HPNTIQ 118

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECE 409
           E S + +     +G+  FG VYK  L           VA+K    +  G   E F  E  
Sbjct: 5   EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAM 64

Query: 410 MMKNIRHRNLIKILHGV 426
           +   ++H N++  L GV
Sbjct: 65  LRARLQHPNVVC-LLGV 80

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
             IG GG   V++     +   A+K  NL+    +  +S+  E   +  ++  +
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 87

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL---GDRMEVAVKVFNLQCG---RAFESFDVECEM 410
               N++     IG+G FG V KAR+   G RM+ A+K   ++          F  E E+
Sbjct: 21  VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKR--MKEYASKDDHRDFAGELEV 78

Query: 411 MKNI-RHRNLIKILHGV 426
           +  +  H N+I  L G 
Sbjct: 79  LCKLGHHPNIIN-LLGA 94

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 6/101 (5%)

Query: 331 QRGKRPSNDANMPLVATWRTFSYLELFRATDEFSEN----NLIGKGGFGSVYKAR-LGDR 385
           +      ND +      W+ +    +        +       +G G FG V++       
Sbjct: 17  KYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATG 76

Query: 386 MEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
                K  N        +   E  +M  + H  LI  LH  
Sbjct: 77  RVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLIN-LHDA 116

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
           ++GKG +G VY  R L +++ +A+K    +  R  +    E  + K+++H+N+++
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQ 83

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
             IG GG   V++     +   A+K  NL+    +  +S+  E   +  ++  +
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKIL 423
            +GKGGF   ++      +   A K+     L      E   +E  + +++ H++++   
Sbjct: 48  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG-F 106

Query: 424 HGV 426
           HG 
Sbjct: 107 HGF 109

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL-QCGRAFESFDVECEMMKNIRHR 417
            + F++   IGKG FG V+K      +  VA+K+ +L +     E    E  ++      
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSP 80

Query: 418 NLIK 421
            + K
Sbjct: 81  YVTK 84

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKIL 423
            +GKGGF   ++      +   A K+     L      E   +E  + +++ H++++   
Sbjct: 22  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG-F 80

Query: 424 HGV 426
           HG 
Sbjct: 81  HGF 83

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 369 IGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKI 422
           IG G FG VYK  L        + VA+K        +    F  E  +M    H N+I+ 
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIR- 110

Query: 423 LHGV 426
           L GV
Sbjct: 111 LEGV 114

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 366 NNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL--QCGRAFESFDVECEMMKNIRHRNLIK 421
           +  IG+G F +VYK       +EVA              + F  E EM+K ++H N+++
Sbjct: 31  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVR 89

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL--------GDRMEVAVKVFNLQCG-RAFESFDVE 407
           EF  + L     +G+G FG V  A           + + VAVK+       +       E
Sbjct: 31  EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90

Query: 408 CEMMKNI-RHRNLIKILHGV 426
            EMMK I +H+N+I  L G 
Sbjct: 91  MEMMKMIGKHKNIIN-LLGA 109

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQ-CGRAFESFDVECEMMKNIR 415
           +    +     +G GGFG V +        +VA+K    +   +  E + +E ++MK + 
Sbjct: 11  QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLN 70

Query: 416 HRNLIKIL 423
           H N++   
Sbjct: 71  HPNVVSAR 78

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
             IG GG   V++     +   A+K  NL+    +  +S+  E   +  ++  +
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 115

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL--------GDRMEVAVKVFNLQCG-RAFESFDVE 407
           EF  + L     +G+G FG V  A           + + VAVK+       +       E
Sbjct: 77  EFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 136

Query: 408 CEMMKNI-RHRNLIKILHGV 426
            EMMK I +H+N+I  L G 
Sbjct: 137 MEMMKMIGKHKNIIN-LLGA 155

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKIL 423
           L+GKG F  VY+A  +   +EVA+K+ +   +      +    E ++   ++H ++++ L
Sbjct: 18  LLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILE-L 76

Query: 424 HGV 426
           +  
Sbjct: 77  YNY 79

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 2e-06
 Identities = 30/165 (18%), Positives = 65/165 (39%), Gaps = 24/165 (14%)

Query: 117 GSLPACFSNLTSLRIVSL-GSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIG---- 171
             L      +  L  + + G+N L+       NLK   +L   S  L   +  +I     
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLK---SLEIISGGLPDSVVEDILGSDL 218

Query: 172 -NLKVLIGIDFSMNNFSGVIPTEI-------GGLKNLEYLFLGYNRLQGSIPDSFGD--- 220
            NL+ L+ +   + ++       +           NL++L +     Q  + + F +   
Sbjct: 219 PNLEKLV-LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 221 LISLKFLNLSNNNLSG----AIPASLEKLSYLENLNLSFNKLEGE 261
           L  L+ +++S   L+      +   ++K+ +L+ +N+ +N L  E
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 4e-04
 Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 32/189 (16%)

Query: 68  NGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS-----LPAC 122
              +   L  +  L  L ++      ++         L  L++    L  S     L + 
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGT---NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
             NL  L +     +          ++     L                    L  +   
Sbjct: 218 LPNLEKLVLYVGVEDYGFDG-----DMNVFRPL------------FSKDRFPNLKWLGIV 260

Query: 183 MNNFSGVIPTEIGG---LKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNLSNNNLS 235
                 V+         L  LE + +    L       + D    +  LKF+N+  N LS
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 236 GAIPASLEK 244
             +   L+K
Sbjct: 321 DEMKKELQK 329

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 362 EFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
             S+  ++G G FG V+K       +++A K+   +  +  E    E  +M  + H NLI
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149

Query: 421 KILHGV 426
           + L+  
Sbjct: 150 Q-LYDA 154

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 330 QQRGKRPSNDANMPLVATWRTFSYLELFRATDEFSE----NNLIGKGGFGSVYKAR-LGD 384
            +     S++ +  +   W+ +    +    D   +    +  +G G FG V++      
Sbjct: 122 VRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERAT 181

Query: 385 RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
               A K          E+   E + M  +RH  L+  LH  
Sbjct: 182 GNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVN-LHDA 222

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN 418
            + F     +G+G +GSVYKA        VA+K   ++     +    E  +M+     +
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPH 85

Query: 419 LIK 421
           ++K
Sbjct: 86  VVK 88

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECE 409
           EF  + L     +G+G FG V +A             VAVK+           +   E +
Sbjct: 23  EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELK 82

Query: 410 MMKNI-RHRNLIKILHGV 426
           ++ +I  H N++  L G 
Sbjct: 83  ILIHIGHHLNVVN-LLGA 99

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 367 NLIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKI 422
             +GKG FG+VY AR    +  +A+KV     L+          E E+  ++RH N+++ 
Sbjct: 15  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILR- 73

Query: 423 LHGV 426
           L+G 
Sbjct: 74  LYGY 77

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL-QCGRAFESFDVECEMMKNIR 415
           R   +F     +G+GGFG V++A+   D    A+K   L     A E    E + +  + 
Sbjct: 3   RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE 62

Query: 416 HRNLIKILH 424
           H  +++  +
Sbjct: 63  HPGIVRYFN 71

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL-QCGRAFESFDVECEMMKNIR 415
           R   +F     +G+GGFG V++A+   D    A+K   L     A E    E + +  + 
Sbjct: 2   RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE 61

Query: 416 HRNLIK 421
           H  +++
Sbjct: 62  HPGIVR 67

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 357 FRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVK-VFNLQC--GRAFESFDVECEMMKN 413
            +    ++   +IG G FG V++A+L +  EVA+K V   +    R       E ++M+ 
Sbjct: 36  EQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNR-------ELQIMRI 88

Query: 414 IRHRNLIKILH 424
           ++H N++ +  
Sbjct: 89  VKHPNVVDLKA 99

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 18/118 (15%)

Query: 325 LILRYQQRGKRPSNDANMPLVATWRTFSYLELFRATD-EFSENNL-----IGKGGFGSVY 378
               +      P+ +            S  EL      E   + L     +G+G FG V 
Sbjct: 28  YHHHHHHDYDIPTTENLYF-QGMLAGVSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVV 86

Query: 379 KARL--------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGV 426
            A              +VAVK+       +       E EMMK I +H+N+I  L G 
Sbjct: 87  LAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIIN-LLGA 143

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 14/78 (17%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECE 409
           EF   NL     +G G FG V  A        G  ++VAVK+   +      E+   E +
Sbjct: 41  EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELK 100

Query: 410 MMKNI-RHRNLIKILHGV 426
           MM  +  H N++ +L G 
Sbjct: 101 MMTQLGSHENIVNLL-GA 117

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVK---VFNLQCGRAFESFDVECEMMKNIRH 416
             F     IG+G F  VY+A  L D + VA+K   +F+L   +A      E +++K + H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 417 RNLIK 421
            N+IK
Sbjct: 92  PNVIK 96

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHR 417
           +++     IG+G FG     +   D  +  +K  N+     +  E    E  ++ N++H 
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 418 NLIK 421
           N+++
Sbjct: 84  NIVQ 87

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHR 417
           +++     IG G +G   K R   D   +  K  +         +    E  +++ ++H 
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 418 NLIKILH 424
           N+++   
Sbjct: 66  NIVRYYD 72

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 47.0 bits (111), Expect = 7e-06
 Identities = 8/77 (10%), Positives = 21/77 (27%), Gaps = 4/77 (5%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKIL 423
            +  G    V+  R +    + A+KVF           E           +   +  +  
Sbjct: 69  PLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEAR 128

Query: 424 HGVAVITFTVCLCLFHH 440
               ++  +  + +   
Sbjct: 129 DRRRLLLPSDAVAVQSQ 145

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECE 409
           EF  N L     +G G FG V +A           M VAVK+          E+   E +
Sbjct: 19  EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELK 78

Query: 410 MMKNI-RHRNLIKILHGV 426
           ++  +  H N++  L G 
Sbjct: 79  VLSYLGNHMNIVN-LLGA 95

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 362 EFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLI 420
            F   +++G G  G++    + D  +VAVK    +C   F   D E ++++    H N+I
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVI 81

Query: 421 KILH 424
           +   
Sbjct: 82  RYFC 85

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 47  IPEEISNLTNSTI--VNLGGNKLN-GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLA 103
           I  E+ N T + +  + L   K N G I    ++   L+ L L +  L  S+  ++  L 
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLP 71

Query: 104 ELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNL 155
           +L +L+L  N++ G L      L +L  ++L  NKL  +  T   LK +  L
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS-TLEPLKKLECL 122

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 184 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLE 243
            +  G I        NLE+L L    L  S+  +   L  LK L LS N + G +    E
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 244 KLSYLENLNLSFNKLE 259
           KL  L +LNLS NKL+
Sbjct: 93  KLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSH--SLEDFRMYNCNISGGIPEEISNLTNSTI 59
           +   +L  + L N  L       SV NL     L+   +    I GG+      L N T 
Sbjct: 46  AEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99

Query: 60  VNLGGNKLNG-SIPITLSKLQKLQGLGLEDN 89
           +NL GNKL   S    L KL+ L+ L L + 
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
            + +  L + +  SN      LT     ++  L+  +  L S   L    L  L  ++ S
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISVSNLP--KLPKLKKLELS 79

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLISLKFLNLSNN 232
            N   G +      L NL +L L  N+L+  S  +    L  LK L+L N 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 197 LKNLEYLFLGYNRLQ-GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSF 255
              +  L L   +   G I     + ++L+FL+L N  L     ++L KL  L+ L LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSE 80

Query: 256 NKLEG 260
           N++ G
Sbjct: 81  NRIFG 85

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 172 NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN 231
           ++K L+ +D S +N  G +       + LE+L      L  SI +    L  LK L LS+
Sbjct: 18  DVKELV-LDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSD 73

Query: 232 NNLSGAIPASLEKLSYLENLNLSFNKLE 259
           N +SG +    EK   L +LNLS NK++
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLE-IGNLKVLIGIDF 181
            S++  L + +  SN+     LT    +++  L+  +  LTS   +  +  L  L  ++ 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTS---IANLPKLNKLKKLEL 71

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLISLKFLNLSNN 232
           S N  SG +        NL +L L  N+++  S  +    L +LK L+L N 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSH--SLEDFRMYNCNISGGIPEEISNLTNSTI 59
              + L  +   N  L      TS+ NL     L+   + +  +SGG+        N T 
Sbjct: 39  DEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92

Query: 60  VNLGGNKLNG-SIPITLSKLQKLQGLGLEDN 89
           +NL GNK+   S    L KL+ L+ L L + 
Sbjct: 93  LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 47  IPEEISNLTNSTI--VNLGGNKLN-GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLA 103
           I  E+ N T S +  + L  ++ N G +     + ++L+ L   +  L  SI  ++  L 
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLN 64

Query: 104 ELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNL 155
           +L +L+L  N++SG L        +L  ++L  NK+     T   LK + NL
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 197 LKNLEYLFLGYNRLQ-GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSF 255
             +++ L L  +R   G +     +   L+FL+  N  L+    A+L KL+ L+ L LS 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 256 NKLEGEIP 263
           N++ G + 
Sbjct: 74  NRVSGGLE 81

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 360 TDEFSENNLIGKGGFGSVYKARLGD------RMEVAVKVFNLQCGRAFESFDVECEMMKN 413
           +     ++L+G+G F  VY+A  GD      + +  +KV        F       E +K 
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 414 IRHRNLIKI 422
                 +K 
Sbjct: 124 SMQHMFMKF 132

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
           ++G G F  V+  +        A+K           S + E  ++K I+H N++ +
Sbjct: 16  VLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTL 71

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKIL 423
            +GKG FG+VY AR   ++  +A+KV     L+          E E+  ++RH N+++ +
Sbjct: 21  PLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILR-M 79

Query: 424 HGV 426
           +  
Sbjct: 80  YNY 82

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 14/78 (17%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECE 409
           EF  NNL     +G G FG V +A           ++VAVK+          E+   E +
Sbjct: 42  EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELK 101

Query: 410 MMKNI-RHRNLIKILHGV 426
           +M ++ +H N++  L G 
Sbjct: 102 IMSHLGQHENIVN-LLGA 118

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIR 415
           +D +    ++GKG FG V   +      E AVKV +   ++     ES   E +++K + 
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 416 HRNLIKIL 423
           H N++K+ 
Sbjct: 85  HPNIMKLY 92

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 360 TDEFSENNLIGKG--GFGSVYKAR-LGDRMEVAVKVFNL--QCGRAFESFDVECEMMKNI 414
              +    +IGKG     +V  AR       V V+  NL             E  + K  
Sbjct: 24  GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF 83

Query: 415 RHRNLIK 421
            H N++ 
Sbjct: 84  NHPNIVP 90

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRH 416
            + ++   ++GKG FG V K +    + E AVKV N      +   +   E E++K + H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 417 RNLIKIL 423
            N++K+ 
Sbjct: 81  PNIMKLF 87

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 330 QQRGKRPSNDANMPLVATWRTFSYLELFRATDEFSEN----NLIGKGGFGSVYKAR-LGD 384
                  S   N+      +    + +       SE       +G G +G V   R    
Sbjct: 2   HHHHHHSSGRENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVT 61

Query: 385 RMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRHRNLIKIL 423
            +E A+K+         +      E  ++K + H N++K+ 
Sbjct: 62  HVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLY 102

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 368 LIGKGGFGSVYKA---RLGDRMEVAVKVFNLQCGRAF-ESFDVECEMMKNIRHRNLIKI 422
            I  GG G +Y A    +  R  V +K                E + +  + H ++++I
Sbjct: 87  CIAHGGLGWIYLALDRNVNGR-PVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQI 144

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDV--ECEMMKNIRHRNLIKILHG 425
           +GKG F  V +   +    E A  + N +   A +   +  E  + + ++H N+++ LH 
Sbjct: 19  LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVR-LHD 77

Query: 426 V 426
            
Sbjct: 78  S 78

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 367 NLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
             +G+G FG V++ +      + AVK   L+  R       E      +    ++ 
Sbjct: 64  PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVP 114

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 360 TDEFSEN----NLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQ--CGRAFESFDVECEMMK 412
           + +FS+N      +GKG F  V +       +E A K+ N +    R F+  + E  + +
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60

Query: 413 NIRHRNLIKILHGV 426
            ++H N+++ LH  
Sbjct: 61  KLQHPNIVR-LHDS 73

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 357 FRATDEFSEN----NLIGKGGFGSVYKAR-LGDRMEVAVKVFN--LQCGRAFESFDVECE 409
                 F+E      ++GKG FG V K +    + E AVKV N      +   +   E E
Sbjct: 14  LYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVE 73

Query: 410 MMKNIRHRNLIKI 422
           ++K + H N++K+
Sbjct: 74  LLKKLDHPNIMKL 86

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 52/306 (16%), Positives = 90/306 (29%), Gaps = 69/306 (22%)

Query: 1   MSNCKSLTLIYLSNNPL--DGILPKTSV-GNLSHSLEDFRMYNCNISGGIPEEI-----S 52
            S    +T + LS N L     +       N   S+    +   ++     +E+     +
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 53  NLTNSTIVNLGGNKLNGSIPITLSKL-----QKLQGLGLEDNKLEGSIPDDICHLAE--- 104
              N T +NL GN L+      L K        +  L L  N              +   
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS---SKSSSEFKQAFS 134

Query: 105 -----LYRLDLDGNK--------LSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKD 151
                +  L+L GN         L   L A  +N+ SL    L  N L S          
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN---LRGNNLASK--------- 182

Query: 152 ILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG-GLKN----LEYLFLG 206
                 +   L   L     ++  L   D S N        E+     +    +  L L 
Sbjct: 183 ------NCAELAKFLASIPASVTSL---DLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 207 YNRLQGS----IPDSFGDLISLKFLNLSNNNLSG-------AIPASLEKLSYLENLNLSF 255
            N L G     +      L  L+ + L  + +         A+ A+   +  +  ++ + 
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 256 NKLEGE 261
            ++   
Sbjct: 294 KEIHPS 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 52/261 (19%), Positives = 89/261 (34%), Gaps = 19/261 (7%)

Query: 4   CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLG 63
               +L    +     + P  +   LS  +  FR     +   + E  S      +    
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 64  GNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG-NKLS-GSLPA 121
                 ++   LS+  KLQ L LE  +L   I + +   + L RL+L G +  S  +L  
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162

Query: 122 CFSNLTSLRIVSLGS-NKLTSVPLTFW------NLKDILNLNFSSNFLT-SPLPLEIGNL 173
             S+ + L  ++L      T   +          +   LNL+     L  S L   +   
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ-LNLSGYRKNLQKSDLSTLVRRC 221

Query: 174 KVLIGIDFSM-NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD----SFGDLISLKFLN 228
             L+ +D S           E   L  L++L L        I        G++ +LK L 
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD---IIPETLLELGEIPTLKTLQ 278

Query: 229 LSNNNLSGAIPASLEKLSYLE 249
           +      G +    E L +L+
Sbjct: 279 VFGIVPDGTLQLLKEALPHLQ 299

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 356 LFRATDEFSEN----NLIGKGGFGSVYKAR-LGDRMEVAVKVFN--LQCGRAFESFDVEC 408
           +  A+ +FS+N      +GKG F  V +       +E A K+ N      R F+  + E 
Sbjct: 20  MMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA 79

Query: 409 EMMKNIRHRNLIKILHGV 426
            + + ++H N+++ LH  
Sbjct: 80  RICRKLQHPNIVR-LHDS 96

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECE-MMKNIRHRNL 419
           +      ++G G  G+V          VAVK   +      +   +E + + ++  H N+
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNV 71

Query: 420 IKI 422
           I+ 
Sbjct: 72  IRY 74

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           +G+G FG V++      +     K   ++ G        E  ++   RHRN++  LH  
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILH-LHES 69

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
           IG+G +G V  A   G R+  A K          + F  E E+MK++ H N+I+ L+  
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIR-LYET 74

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDV-----ECEMMKNIRHRNLIKI 422
           IG+G +G V  A     R   A+K+ N    R     DV     E  +MK + H N+ ++
Sbjct: 34  IGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARL 93

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDV-----ECEMMKNIRHRNL 419
           +G G  G V  A       +VA+K+ +      G A E+        E E++K + H  +
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 420 IKI 422
           IKI
Sbjct: 78  IKI 80

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDV-----ECEMMKNIRHRNL 419
           +G G  G V  A       +VA+++ +      G A E+        E E++K + H  +
Sbjct: 143 LGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 202

Query: 420 IKI 422
           IKI
Sbjct: 203 IKI 205

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 357 FRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVK-VFNLQ--CGRAFESFDVECEMMK 412
                 +++  +IG G FG VY+A+L D  E VA+K V   +    R       E ++M+
Sbjct: 50  RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-------ELQIMR 102

Query: 413 NIRHRNLIKILH 424
            + H N++++ +
Sbjct: 103 KLDHCNIVRLRY 114

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 359 ATDEFSEN---------NLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVEC 408
           +TD FS           +++G+G    V     L    E AVK+   Q G        E 
Sbjct: 2   STDSFSGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREV 61

Query: 409 EMMKNIR-HRNLIKILHGV 426
           EM+   + HRN+++ L   
Sbjct: 62  EMLYQCQGHRNVLE-LIEF 79

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN------LQCGRAFESFDVECEMMK 412
            D +     +G G F  V K R     ++ A K          + G + E  + E  ++K
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 413 NIRHRNLIKILHGV 426
            I+H N+I  LH V
Sbjct: 70  EIQHPNVIT-LHEV 82

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 24/167 (14%)

Query: 350 TFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKV--------FNLQCGRAF 401
            FS+      T++      IG+G FG V++    D   VA+K+         N    + F
Sbjct: 12  PFSH---CLPTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTF 67

Query: 402 ESFDVECEMMKNI---------RHRNLIKILHGVAVI-TFTVCLCLFHHSSASASASLVS 451
           E    E  + K +         R    I +     V  ++   L        S   S   
Sbjct: 68  EEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSAND 127

Query: 452 SLTLSRPAKGGGFRGCVLWHVGVDFAAFVFVLEPGVEVICFVFEILL 498
                +  +   F        G+D       L         + ++  
Sbjct: 128 RPDFFKDDQ--LFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTA 172

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 19/75 (25%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFN---LQCGRAFESFDV--------------ECEMM 411
           + +G F  +      ++   A+K +    L+  R F   +               E +++
Sbjct: 39  LNQGKFNKIILCEKDNK-FYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 412 KNIRHRNLIKILHGV 426
            +I++   +    G+
Sbjct: 98  TDIKNEYCLT-CEGI 111

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFN------LQCGRAFESFDVECEMMKNIRHRNLIK 421
           +G G F  V K R  G   E A K          + G + E  + E  +++ IRH N+I 
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 422 ILHGV 426
            LH +
Sbjct: 73  -LHDI 76

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIK 421
           ++ +GGF  VY+A+ +G   E A+K           +   E   MK +  H N+++
Sbjct: 35  VLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQ 90

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNL-QCGRAFESFDVECEMMKNIRHRNLIKILHG 425
            +G+G +G V  A        VAVK+ ++ +     E+   E  + K + H N++K  +G
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVK-FYG 72

Query: 426 V 426
            
Sbjct: 73  H 73

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFN------LQCGRAFESFDVECEMMKNIRHRNLIK 421
           +G G F  V K R     +E A K          + G   E  + E  +++ + H N+I 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79

Query: 422 ILHGV 426
            LH V
Sbjct: 80  -LHDV 83

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEM---MKN 413
           R T EF E   IG G FGSV+K     D    A+K        + +  +   E+      
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 67

Query: 414 IRHRNLIK 421
            +H ++++
Sbjct: 68  GQHSHVVR 75

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN----LQCGRAFESFDVECEMMKNIRHRNLIKI 422
           L+G+G +G V +          AVK+       +      +   E ++++ +RH+N+I+ 
Sbjct: 12  LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQ- 70

Query: 423 LHGV 426
           L  V
Sbjct: 71  LVDV 74

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNL-QCGRAFESFDVECEMMKNIRHRNLIKILHG 425
            +G+G +G V  A        VAVK+ ++ +     E+   E  + K + H N++K  +G
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVK-FYG 72

Query: 426 V 426
            
Sbjct: 73  H 73

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFN-LQCGRAFESFDVECEMMKNIRHRNLIKI 422
           +G G FG V+        +E  +K  N  +     E  + E E++K++ H N+IKI
Sbjct: 30  LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKI 85

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
           ++G+    +  +A          V V          +     E +  +R    IK
Sbjct: 85  VLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIK 139

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 35/276 (12%), Positives = 85/276 (30%), Gaps = 25/276 (9%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPK--TSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNST 58
           +       +  L      G +    T + N    L+        +S     ++  L  + 
Sbjct: 80  LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS---DLDLDRLAKAR 136

Query: 59  IVNLGGNKLNGSIPIT-------LSKLQKLQGLGLEDNKLEGSIPDDICHLAE----LYR 107
             +L   KL+     T       ++  +K++ L +E++         +  LA+    L  
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196

Query: 108 LDLDGNKLSG-------SLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
           L+    + +        ++     +L S+++      +L        NL++    + + +
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 161 FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPDSFG 219
                  + +   + L  +  S    +  +P        +  L L Y  L+         
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315

Query: 220 DLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSF 255
              +L+ L   N      +    +    L+ L +  
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECE---MMKN 413
                F   + +G G +G V+K R   D    AVK          +      E     K 
Sbjct: 54  FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKV 113

Query: 414 IRHRNLIK 421
            +H   ++
Sbjct: 114 GQHPCCVR 121

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKI 422
            +G G FG V          +VAVK+ N   ++          E + +K  RH ++IK+
Sbjct: 18  TLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKL 76

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKV-----FNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
           IGKG F  V +        + AVK+     F    G + E    E  +   ++H ++++ 
Sbjct: 32  IGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVE- 90

Query: 423 LHGV 426
           L   
Sbjct: 91  LLET 94

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN----LQCGRAFESFDV--ECEMMKNIR----H 416
           L+GKGGFG+V+    L DR++VA+KV      L      +S     E  ++  +     H
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGH 97

Query: 417 RNLIKIL 423
             +I++L
Sbjct: 98  PGVIRLL 104

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFN------LQCGRAFESFDVECEMMKNIRHRNLIK 421
           +G G F  V K R     +E A K          + G + E  + E  +++ + H N+I 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79

Query: 422 ILHGV 426
            LH V
Sbjct: 80  -LHDV 83

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKV-------------FNLQCGRAFESFD 405
            + + +   +G G +G V   +      E A+KV              N    +  E   
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIY 94

Query: 406 VECEMMKNIRHRNLIKIL 423
            E  ++K++ H N+IK+ 
Sbjct: 95  NEISLLKSLDHPNIIKLF 112

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKIL 423
            +G+G FG V  A     + +VA+K  +   L+        + E   +K +RH ++IK L
Sbjct: 16  TLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIK-L 74

Query: 424 HGV 426
           + V
Sbjct: 75  YDV 77

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 369 IGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDV-----ECEMMKNIRHRNL 419
           +G G FG V+ A       EV VK      +      E   +     E  ++  + H N+
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 420 IKILH 424
           IK+L 
Sbjct: 92  IKVLD 96

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIKIL 423
            +G G FG V   +      +VAVK+ N   ++          E + +K  RH ++IK L
Sbjct: 23  TLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIK-L 81

Query: 424 HGV 426
           + V
Sbjct: 82  YQV 84

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDV------ECEMMKNIRHR--N 418
           L+G GGFGSVY    + D + VA+K         +           E  ++K +      
Sbjct: 50  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 109

Query: 419 LIKIL 423
           +I++L
Sbjct: 110 VIRLL 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	499
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.98
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.98
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.9
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.9
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.89
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.89
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.89
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.89
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.89
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.86
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.85
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.8
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.8
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.75
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.75
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.74
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3niz_A	311	Rhodanese family protein; structural genomics, str	99.74
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.74
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.74
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.73
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.73
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.73
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.73
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.73
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.72
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.72
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.72
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.72
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.71
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.71
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.71
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.71
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.71
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.71
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.71
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.71
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.71
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.71
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.7
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.7
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.7
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.7
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.7
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.7
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.69
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.69
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.69
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.69
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.69
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.69
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.69
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.69
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.69
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.69
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.69
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.69
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.68
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.68
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.68
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.68
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.68
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.68
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.68
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.68
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.68
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.68
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.68
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.68
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.68
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.68
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.68
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.68
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.68
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.68
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.68
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.68
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.68
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.67
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.67
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.67
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.67
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.67
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.67
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.67
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.67
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.67
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.67
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.67
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.67
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.67
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.67
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.67
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.67
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.67
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.67
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.67
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.67
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.66
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.66
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.66
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.66
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.66
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.66
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.66
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.66
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.66
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.66
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.66
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.66
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.66
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.66
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.66
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.66
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.66
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.65
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.65
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.65
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.65
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.65
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.65
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.65
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.65
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.65
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.65
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.65
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.65
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.65
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.65
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.65
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.65
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.65
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.65
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.64
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.64
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.64
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.64
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.64
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.64
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.64
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.64
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.64
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.64
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.64
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.64
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.64
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.64
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.64
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.64
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.64
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.64
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.64
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.64
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.64
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.64
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.64
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.64
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.63
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.63
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.63
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.63
3bhy_A	283	Death-associated protein kinase 3; death associate	99.63
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.63
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.63
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.63
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.63
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.63
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.63
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.63
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.63
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.63
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.62
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.62
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.62
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.62
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.62
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.62
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.62
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.62
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.62
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.62
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.62
3uqc_A	286	Probable conserved transmembrane protein; structur	99.62
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.62
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.62
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.61
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.61
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.61
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.61
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.61
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.61
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.61
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.61
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.6
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.6
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.6
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.6
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.6
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.6
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.6
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.6
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.6
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.59
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.59
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.59
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.59
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.59
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.58
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.58
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.58
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.58
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.58
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.58
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.57
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.57
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.57
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.55
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.55
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.55
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.54
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.54
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.54
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.53
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.53
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.51
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.51
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.5
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.49
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.49
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.49
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.48
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.41
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.15
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.29
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.23
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.34
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	94.5
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	91.69
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	91.02
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	89.9
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	89.56
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	86.93
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	85.79
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	85.61
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	85.59
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	83.66
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	82.16
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	81.45
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	80.9

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-39  Score=350.21  Aligned_cols=289  Identities=34%  Similarity=0.584  Sum_probs=265.1

Q ss_pred             CCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         4 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      +++|++|++++|.+++..|. .+..++ +|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~-~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPP-TLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCG-GGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCccEEECCCCccccccCH-HHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence            67899999999999888887 788888 8999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC-CCccccCCCCCcEEEcCCCcC
Q 010856           84 LGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        84 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      |++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++. +|..+..+++|+.|++++|.+
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            9999999998999999999999999999999999999999999999999999999985 888999999999999999988


Q ss_pred             CCCCccc----------------------------------------------------------------------ccC
Q 010856          163 TSPLPLE----------------------------------------------------------------------IGN  172 (499)
Q Consensus       163 ~~~~~~~----------------------------------------------------------------------~~~  172 (499)
                      ++.+|..                                                                      +..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            7655533                                                                      344


Q ss_pred             CCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEE
Q 010856          173 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLN  252 (499)
Q Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  252 (499)
                      +++|+.|++++|++++.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|||++|++++.+|..+..+++|+.||
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCcccCCCCCCCCCccccccCCCcCCCCCCCCCCCCCCCCc
Q 010856          253 LSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSI  297 (499)
Q Consensus       253 l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~~~~~~~~~~~~~  297 (499)
                      +++|+++|.+|....+..+....+.|||.+||.|.   ++|....
T Consensus       711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~  752 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSN  752 (768)
T ss_dssp             CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC
T ss_pred             CcCCcccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCCc
Confidence            99999999999998899999999999999999753   3776533

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-37  Score=315.74  Aligned_cols=138  Identities=20%  Similarity=0.202  Sum_probs=121.6

Q ss_pred             CCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeC
Q 010856          150 KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNL  229 (499)
Q Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  229 (499)
                      ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            46677777777777777788889999999999999999888889999999999999999999888899999999999999


Q ss_pred             CCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCCC
Q 010856          230 SNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       230 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~~  287 (499)
                      ++|++++..|..|..+++|++|++++|++++..+.. ..++.++.+++.+|++.|+|+.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999888999999999999999999999766544 4678899999999999998874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.9e-37  Score=311.60  Aligned_cols=281  Identities=23%  Similarity=0.274  Sum_probs=219.8

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++++.|+|++|++++..+. .+..++ +|++|+|++|.++++.|.+|.++++|++|+|++|.++...+..|.++++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~-~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQD-EFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTT-TTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHh-HccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            4677888888888777665 667777 78888888888877777778888888888888888776666667777888888


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCCCcCC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~  163 (499)
                      +|++|.+....+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++.++. .+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            888888777777777777788888888887777777777777777777777777777654 4666777777777777766


Q ss_pred             CCCcccccCCC------------------------CccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcccc
Q 010856          164 SPLPLEIGNLK------------------------VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG  219 (499)
Q Consensus       164 ~~~~~~~~~l~------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  219 (499)
                      +..+..|..++                        +|+.|++++|+++...+..+..+++|++|+|++|.+++..+..|.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            65555555544                        455555666667665556788899999999999999988888899


Q ss_pred             CCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCCC
Q 010856          220 DLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       220 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~~  287 (499)
                      .+++|+.|++++|++++..+..|..+++|+.|++++|++++..+.. ..+++++.+++.+|||.|+|..
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            9999999999999999888999999999999999999999766543 4567889999999999998854

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3e-37  Score=297.22  Aligned_cols=254  Identities=32%  Similarity=0.552  Sum_probs=240.5

Q ss_pred             cccEEEcccCCCcc--cCCccccCCCCCCEEeccC-CcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEE
Q 010856           32 SLEDFRMYNCNISG--GIPEEISNLTNSTIVNLGG-NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL  108 (499)
Q Consensus        32 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  108 (499)
                      ++++|+|++|.+++  .+|..|.++++|++|++++ |.+.+..|..|.++++|++|+|++|.+++..|..|..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            79999999999998  8899999999999999995 99998999999999999999999999998999999999999999


Q ss_pred             eeecCCCCCcCCccccCCccCCeeeccccCCC-CCCccccCCC-CCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcc
Q 010856          109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT-SVPLTFWNLK-DILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF  186 (499)
Q Consensus       109 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  186 (499)
                      ++++|.+++..|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|.+++..|..+..++ |+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            99999999999999999999999999999999 5899999998 999999999999988899999887 99999999999


Q ss_pred             cccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCC
Q 010856          187 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG  266 (499)
Q Consensus       187 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  266 (499)
                      ++..|..|..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|...
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            999999999999999999999999966655 8889999999999999999999999999999999999999999999988


Q ss_pred             CCCCccccccCCCcCCCCCCC
Q 010856          267 SFGNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       267 ~~~~l~~~~l~~N~~~c~~~~  287 (499)
                      .++.+..+++.+|+++|+.|.
T Consensus       289 ~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTS
T ss_pred             cccccChHHhcCCCCccCCCC
Confidence            899999999999999998753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-35  Score=319.26  Aligned_cols=251  Identities=35%  Similarity=0.557  Sum_probs=215.2

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            67777888887777888888888888888888888888888888888888888888888888888888888889999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCC-CCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccC
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI  190 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (499)
                      +|++++..|..+..+++|+.|++++|+++. +|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            999888888888888899999999998885 7888888899999999999988888888888999999999998887655


Q ss_pred             ccc----------------------------------------------------------------------ccCCcCC
Q 010856          191 PTE----------------------------------------------------------------------IGGLKNL  200 (499)
Q Consensus       191 ~~~----------------------------------------------------------------------l~~l~~L  200 (499)
                      |..                                                                      +..+++|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            543                                                                      2335678


Q ss_pred             ceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCC
Q 010856          201 EYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGN  279 (499)
Q Consensus       201 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N  279 (499)
                      +.|++++|++++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|||++|+++|.+|.. ..++.++.+++++|
T Consensus       635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            88999999999999999999999999999999999999999999999999999999999888875 45677888999988


Q ss_pred             cCC
Q 010856          280 ELL  282 (499)
Q Consensus       280 ~~~  282 (499)
                      +..
T Consensus       715 ~l~  717 (768)
T 3rgz_A          715 NLS  717 (768)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            854

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=302.09  Aligned_cols=284  Identities=21%  Similarity=0.228  Sum_probs=231.3

Q ss_pred             CCCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCC
Q 010856            1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQK   80 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   80 (499)
                      |.++++|++|+|++|.+++..|. .+.+++ +|++|+|++|.++.+.+..|.++++|++|+|++|.+++..+..|.++++
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPG-AFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTT-TTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ccCCCCCCEEECCCCccCEeChh-hhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            45788888888888888887776 777777 8888888888888777777888888888888888888777778888888


Q ss_pred             CCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCC----------
Q 010856           81 LQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNL----------  149 (499)
Q Consensus        81 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l----------  149 (499)
                      |++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+..++. .+..+          
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence            8888888888887777778888888888888888876666667777777777777776665332 33333          


Q ss_pred             --------------CCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCC
Q 010856          150 --------------KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP  215 (499)
Q Consensus       150 --------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  215 (499)
                                    .+|++|++++|.++.+.+..+..+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred             CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence                          366677777777877666778999999999999999999888899999999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCCC
Q 010856          216 DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       216 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~~  286 (499)
                      ..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+..+.+.......+.++...|..|
T Consensus       290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            99999999999999999999988889999999999999999999765543333334446677788888664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.7e-35  Score=306.62  Aligned_cols=283  Identities=22%  Similarity=0.263  Sum_probs=249.3

Q ss_pred             CCCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCC-ccccCCC
Q 010856            1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIP-ITLSKLQ   79 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~   79 (499)
                      |+++++|++|++++|.++.. |. .+..++ +|++|++++|.+++..|..+..+++|++|++++|.+.+..+ ..+..++
T Consensus       274 ~~~l~~L~~L~l~~n~l~~l-p~-~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSEL-PS-GLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCC-CS-SCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             hccccCCCEEeccCCccCCC-Ch-hhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            45688999999999999844 44 567777 89999999999998888889999999999999998875444 4588999


Q ss_pred             CCCeEecccccccccC--CccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCC-C-ccccCCCCCcEE
Q 010856           80 KLQGLGLEDNKLEGSI--PDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-P-LTFWNLKDILNL  155 (499)
Q Consensus        80 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~~l~~L~~L  155 (499)
                      +|++|++++|.+++..  +..+..+++|++|++++|++.+..+..|..+++|+.|++++|+++.. + ..+..+++|++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            9999999999998765  67889999999999999999988889999999999999999999874 3 348889999999


Q ss_pred             EcCCCcCCCCCcccccCCCCccEEEccCCccccc---CcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCC
Q 010856          156 NFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGV---IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNN  232 (499)
Q Consensus       156 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N  232 (499)
                      ++++|.+++..+..+..+++|+.|++++|++++.   .+..+..+++|++|++++|++++..|..|..+++|+.|++++|
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            9999999988888999999999999999999863   3356889999999999999999998999999999999999999


Q ss_pred             cCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCCC
Q 010856          233 NLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       233 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~~  287 (499)
                      ++++..|..+..+++| .|++++|++++.+|.. ..++.++.+++.+|||.|+|+.
T Consensus       511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999 9999999999877754 4467889999999999998853

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.1e-34  Score=302.01  Aligned_cols=141  Identities=23%  Similarity=0.246  Sum_probs=98.5

Q ss_pred             CCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccc-cCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCE
Q 010856          148 NLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSG-VIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKF  226 (499)
Q Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  226 (499)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|++++..|..|..+++|+.
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence            34444444444444444445555666666666666666665 35666777777778888888777777777888888888


Q ss_pred             EeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCC-CccccccCCCcCCCCCCCC
Q 010856          227 LNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFG-NFSAESFEGNELLCGSPNL  288 (499)
Q Consensus       227 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~l~~~~l~~N~~~c~~~~~  288 (499)
                      |++++|++++..|..+..+++|+.|++++|++++..+....++ +++.+++.+|||.|+|+..
T Consensus       502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             EECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            8888888887777888888888888888888875444434454 4788888888888888643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1e-34  Score=294.92  Aligned_cols=264  Identities=22%  Similarity=0.267  Sum_probs=219.9

Q ss_pred             CCCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCc--cccCC
Q 010856            1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPI--TLSKL   78 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l   78 (499)
                      |+++++|++|+|++|.+.+..+...+..++ +|++|+|++|.+++..|..|.++++|++|++++|.+++..+.  .|..+
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  128 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL  128 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTTTTCT-TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred             hccCccccEEECcCCcccceECcccccccc-cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence            467888888888888887554444677777 888888888888888888888888888888888888764443  37888


Q ss_pred             CCCCeEecccccccccCCcc-ccCcccccEEeeecCCCCCcCCccccCC-------------------------------
Q 010856           79 QKLQGLGLEDNKLEGSIPDD-ICHLAELYRLDLDGNKLSGSLPACFSNL-------------------------------  126 (499)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------  126 (499)
                      ++|++|+|++|.+++..|.. +..+++|++|++++|++++..+..+..+                               
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  208 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP  208 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence            88888888888888776665 7788888888888888876665544332                               


Q ss_pred             ---ccCCee---------------------------------------------------------------eccccCCC
Q 010856          127 ---TSLRIV---------------------------------------------------------------SLGSNKLT  140 (499)
Q Consensus       127 ---~~L~~L---------------------------------------------------------------~L~~n~l~  140 (499)
                         ++|+.|                                                               ++++|+++
T Consensus       209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  288 (455)
T 3v47_A          209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF  288 (455)
T ss_dssp             TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred             cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence               344444                                                               44444444


Q ss_pred             C-CCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcccc
Q 010856          141 S-VPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG  219 (499)
Q Consensus       141 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  219 (499)
                      . .|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..|.
T Consensus       289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence            4 355688899999999999999998899999999999999999999998899999999999999999999998899999


Q ss_pred             CCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC
Q 010856          220 DLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG  265 (499)
Q Consensus       220 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  265 (499)
                      .+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus       369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            9999999999999999888888999999999999999999988854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-34  Score=286.92  Aligned_cols=274  Identities=21%  Similarity=0.230  Sum_probs=173.7

Q ss_pred             CCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         4 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      +++++.|++++|.++.+.+. .+..++ +|++|++++|.++++.+.+|..+++|++|+|++|.+++..|..|.++++|++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~-~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAA-LLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEESEECTH-HHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchhhCChh-Hhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            35555666666655544333 444555 5666666666665555555566666666666666665555555555666666


Q ss_pred             EecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc-c----------------
Q 010856           84 LGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-F----------------  146 (499)
Q Consensus        84 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~----------------  146 (499)
                      |++++|+++...+..|..+++|++|++++|++++..+..+..+++|+.|++++|+++.++.. +                
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence            66666665544434445556666666666666555555555555666666665555543210 0                


Q ss_pred             ---------------------cCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeC
Q 010856          147 ---------------------WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL  205 (499)
Q Consensus       147 ---------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  205 (499)
                                           ...++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..|..+++|++|++
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence                                 1124566666666666643  45677778888888888887777777888888888888


Q ss_pred             cCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCC
Q 010856          206 GYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       206 ~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~  285 (499)
                      ++|++++ .+..+..+++|+.|++++|+++ ..|..+..+++|+.|++++|++++..  ...++.++.+++.+|++.|.+
T Consensus       280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence            8888874 3455567788888888888887 34555677788888888888887543  345677888888888887754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.7e-35  Score=283.55  Aligned_cols=250  Identities=30%  Similarity=0.436  Sum_probs=234.5

Q ss_pred             CCCCEEECcCCCCCc--cCChhccccccccccEEEccc-CCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCC
Q 010856            5 KSLTLIYLSNNPLDG--ILPKTSVGNLSHSLEDFRMYN-CNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKL   81 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~--~~~~~~~~~l~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   81 (499)
                      .+++.|+|++|.+++  ..|. .+..++ +|++|++++ |.+.+.+|..|.++++|++|+|++|.+++..|..|.++++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS-SLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG-GGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccCh-hHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            579999999999998  7787 888898 999999995 99999999999999999999999999998999999999999


Q ss_pred             CeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCc-cCCeeeccccCCCC-CCccccCCCCCcEEEcCC
Q 010856           82 QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLT-SLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSS  159 (499)
Q Consensus        82 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~  159 (499)
                      ++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|+++. +|..+..++ |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            9999999999999999999999999999999999988999999998 99999999999995 888888887 99999999


Q ss_pred             CcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCc
Q 010856          160 NFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP  239 (499)
Q Consensus       160 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  239 (499)
                      |.+++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999998999999999999999999999976665 8889999999999999999999999999999999999999998888


Q ss_pred             ccccCCCCCCEEEccCCcCc
Q 010856          240 ASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       240 ~~~~~l~~L~~L~l~~N~l~  259 (499)
                      .. ..+++|+.+++++|+..
T Consensus       286 ~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEE
T ss_pred             CC-ccccccChHHhcCCCCc
Confidence            76 88999999999999943

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.9e-34  Score=303.38  Aligned_cols=289  Identities=23%  Similarity=0.242  Sum_probs=238.0

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCc--ccCCccccCC--CCCCEEeccCCcCCccCCccccC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNIS--GGIPEEISNL--TNSTIVNLGGNKLNGSIPITLSK   77 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~--~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~   77 (499)
                      +.+++|++|++++|.+++..+. .+..++ +|++|++++|.+.  ...+..|..+  ++|+.|++++|++++..|..|..
T Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPGIKSN-MFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTCTTCCEEECCSCCBCCCCTT-TTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             ccCCCCCEEECCCCccCCCChh-Hhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            3466677777777777665554 566666 6777777776533  2223334332  46777777888888888888999


Q ss_pred             CCCCCeEecccccccccCC-ccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCC---CCCccccCCCCCc
Q 010856           78 LQKLQGLGLEDNKLEGSIP-DDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT---SVPLTFWNLKDIL  153 (499)
Q Consensus        78 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~l~~L~  153 (499)
                      +++|+.|++++|.+.+.++ ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.++   .+|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            9999999999999976554 67889999999999999999888889999999999999999886   3688899999999


Q ss_pred             EEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCc--------ccccCCcCCceeeCcCCcCCCCCCccccCCCCCC
Q 010856          154 NLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP--------TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLK  225 (499)
Q Consensus       154 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  225 (499)
                      .|++++|.++++.+..|.++++|+.|++++|++++..+        ..|.++++|++|++++|+++.+.+..|..+++|+
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            99999999999888889999999999999999986532        2378899999999999999977777899999999


Q ss_pred             EEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCC--CCCCccccccCCCcCCCCCCC-CCCCC
Q 010856          226 FLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG--SFGNFSAESFEGNELLCGSPN-LQVPP  292 (499)
Q Consensus       226 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~l~~~~l~~N~~~c~~~~-~~~~~  292 (499)
                      .|++++|++++..+..|..+++|+.|++++|++++..+...  .+++++.+++.+|||.|+|+. .++..
T Consensus       564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~  633 (680)
T 1ziw_A          564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN  633 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred             eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHH
Confidence            99999999998888889999999999999999998766532  467899999999999999974 44433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=309.84  Aligned_cols=272  Identities=23%  Similarity=0.235  Sum_probs=233.0

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|++++|.+.+..+. .+..++ +|+.|+|++|.+++..|.+|..+++|++|+|++|.+++..+..|..+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~-~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSR-VFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCCEECSC-CSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCcccccChh-hhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence            7899999999999988776 788888 89999999999999999999999999999999999998889999999999999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc-------------------
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-------------------  145 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------  145 (499)
                      ++++|.+....+..|..+++|++|++++|.+++..     .+++|+.|++++|+++.+|..                   
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence            99999999888888999999999999999988532     255666666666666554432                   


Q ss_pred             ---ccCCCCCcEEEcCCCcCCCCCcc-cccCCCCccEEEccCCccc-----ccCcccccCCcCCceeeCcCCcCCCCCCc
Q 010856          146 ---FWNLKDILNLNFSSNFLTSPLPL-EIGNLKVLIGIDFSMNNFS-----GVIPTEIGGLKNLEYLFLGYNRLQGSIPD  216 (499)
Q Consensus       146 ---~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  216 (499)
                         +..+++|+.|++++|++++..+. .+..+++|+.|++++|.++     +..+..|.++++|+.|+|++|++++..+.
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  498 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG  498 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence               34788899999999988865433 4566788999999999987     34456688999999999999999999999


Q ss_pred             cccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCCCC
Q 010856          217 SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       217 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~~~  287 (499)
                      .|..+++|+.|+|++|++++..+..+.  ++|+.|++++|++++..|..  ++.+..+++.+|||.|+|+.
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            999999999999999999988777776  89999999999999988865  67899999999999998863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.1e-34  Score=298.51  Aligned_cols=271  Identities=21%  Similarity=0.230  Sum_probs=174.8

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++++.|++++|.+..+++. .+..++ +|++|+|++|.++++.|..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAA-LLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             CCCSEEEESSCEESEECTH-HHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCCCCCcCHH-HHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            3444444444444443332 334444 44444444444444444444444444444444444444444444444444444


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCC---------------------
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP---------------------  143 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------  143 (499)
                      +|++|.++...+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.++.++                     
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            44444444333333444444444444444444444444444444444444444444322                     


Q ss_pred             -------------------ccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceee
Q 010856          144 -------------------LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLF  204 (499)
Q Consensus       144 -------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  204 (499)
                                         ..+  .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..|..+++|+.|+
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  284 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  284 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence                               111  2467777777777775  35678899999999999999998899999999999999


Q ss_pred             CcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCC
Q 010856          205 LGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCG  284 (499)
Q Consensus       205 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~  284 (499)
                      |++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..  ...++.+..+++.+|+|.|.
T Consensus       285 Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence            99999986 4666778999999999999999 56677888999999999999998653  44578899999999999997


Q ss_pred             C
Q 010856          285 S  285 (499)
Q Consensus       285 ~  285 (499)
                      +
T Consensus       361 ~  361 (597)
T 3oja_B          361 S  361 (597)
T ss_dssp             H
T ss_pred             h
Confidence            6

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.8e-33  Score=295.14  Aligned_cols=118  Identities=25%  Similarity=0.361  Sum_probs=101.7

Q ss_pred             ccCCCCccEEEccCCcc-cccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 010856          170 IGNLKVLIGIDFSMNNF-SGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYL  248 (499)
Q Consensus       170 ~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  248 (499)
                      +..++.|+.|++++|.+ ....|..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred             cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence            34456677777777764 34567788899999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEccCCcCcccCCCCC-CC-CCccccccCCCcCCCCCCC
Q 010856          249 ENLNLSFNKLEGEIPRGG-SF-GNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       249 ~~L~l~~N~l~~~~~~~~-~~-~~l~~~~l~~N~~~c~~~~  287 (499)
                      +.|++++|+|++..|... .+ ++++.+++++|||.|+|..
T Consensus       545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            999999999999888753 34 5789999999999999853

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=7e-33  Score=269.10  Aligned_cols=268  Identities=23%  Similarity=0.296  Sum_probs=234.0

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      +++.++++++.++.+...     ++++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKD-----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCSCCCS-----CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCccccCcc-----CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            789999999999865332     234899999999999988888999999999999999999988899999999999999


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC---CCccccCCCCCcEEEcCCCcC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS---VPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      +++|.++. +|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.++.   .+..+..+++|++|++++|.+
T Consensus       107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            99999984 444443  799999999999998888889999999999999999974   466788999999999999999


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      +.+ |..+.  ++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ ..|..+
T Consensus       184 ~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 TTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             ccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            864 33332  89999999999999988999999999999999999999888889999999999999999999 677789


Q ss_pred             cCCCCCCEEEccCCcCcccCCCCC-------CCCCccccccCCCcCCCCC
Q 010856          243 EKLSYLENLNLSFNKLEGEIPRGG-------SFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       243 ~~l~~L~~L~l~~N~l~~~~~~~~-------~~~~l~~~~l~~N~~~c~~  285 (499)
                      ..+++|+.|++++|++++..+...       ..+.+..+++.+||+.+..
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            999999999999999997654432       2356778899999987643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=293.89  Aligned_cols=142  Identities=27%  Similarity=0.348  Sum_probs=104.7

Q ss_pred             ccCCCCCcEEEcCCCcCCCCCc-ccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCC-CCCCccccCCCC
Q 010856          146 FWNLKDILNLNFSSNFLTSPLP-LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ-GSIPDSFGDLIS  223 (499)
Q Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~  223 (499)
                      +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++ +..|..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            3344555555555555554433 35666777777777777777777777777888888888888876 456777888888


Q ss_pred             CCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCCC
Q 010856          224 LKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       224 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~~  287 (499)
                      |+.|++++|++++..|..+..+++|+.|++++|++++..|.. ..++.++.+++.+|++.|.|+.
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            888888888888777888888888888888888888776653 4567788888888888888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.7e-33  Score=290.05  Aligned_cols=139  Identities=22%  Similarity=0.246  Sum_probs=80.0

Q ss_pred             cCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccC--cccccCCcCCceeeCcCCcCCC-CCCccccCCCC
Q 010856          147 WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI--PTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLIS  223 (499)
Q Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~  223 (499)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|++++..  |..+..+++|++|++++|++++ ..+..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            45567777777777777666666777777777777777776532  3456666777777777777665 33333555555


Q ss_pred             CCEEeCCCCcCCccC---------------------cccccCCCCCCEEEccCCcCcccCCC-CCCCCCccccccCCCcC
Q 010856          224 LKFLNLSNNNLSGAI---------------------PASLEKLSYLENLNLSFNKLEGEIPR-GGSFGNFSAESFEGNEL  281 (499)
Q Consensus       224 L~~L~l~~N~l~~~~---------------------~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~l~~~~l~~N~~  281 (499)
                      |+.|++++|++++..                     |..+..+++|+.|++++|++++..+. ...++.++.+++++|||
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            555555555444333                     33333555555555555555533332 23445555555666665


Q ss_pred             CCCC
Q 010856          282 LCGS  285 (499)
Q Consensus       282 ~c~~  285 (499)
                      .|+|
T Consensus       510 ~c~c  513 (562)
T 3a79_B          510 DCTC  513 (562)
T ss_dssp             CCCH
T ss_pred             CCCc
Confidence            5554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=8.7e-33  Score=268.64  Aligned_cols=266  Identities=24%  Similarity=0.269  Sum_probs=231.7

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      +++.++++++.++.++..  +   +++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~--~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE--I---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC--C---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccccCCC--C---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            699999999999855432  2   34899999999999988888999999999999999999988899999999999999


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC---CCccccCCCCCcEEEcCCCcC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS---VPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      +++|.++. +|..+.  ++|++|++++|+++...+..|..+++|+.|++++|.++.   .+..+..+ +|++|++++|.+
T Consensus       109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            99999984 444443  899999999999998888889999999999999999974   45566666 999999999999


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      +++ |..+.  ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+
T Consensus       185 ~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          185 TGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             SSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             Ccc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence            874 43333  78999999999999988889999999999999999999888889999999999999999999 677789


Q ss_pred             cCCCCCCEEEccCCcCcccCCCCC-------CCCCccccccCCCcCCCC
Q 010856          243 EKLSYLENLNLSFNKLEGEIPRGG-------SFGNFSAESFEGNELLCG  284 (499)
Q Consensus       243 ~~l~~L~~L~l~~N~l~~~~~~~~-------~~~~l~~~~l~~N~~~c~  284 (499)
                      ..+++|+.|++++|++++..+...       ..+.+..+++.+||+.+.
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~  309 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW  309 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence            999999999999999997654431       145678899999998753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.3e-33  Score=287.10  Aligned_cols=132  Identities=23%  Similarity=0.235  Sum_probs=80.4

Q ss_pred             cCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccc--cCcccccCCcCCceeeCcCCcCCCCCC-ccccCCCC
Q 010856          147 WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSG--VIPTEIGGLKNLEYLFLGYNRLQGSIP-DSFGDLIS  223 (499)
Q Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~  223 (499)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|++++  ..|..+..+++|++|++++|.+++..| ..+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            456778888888888877777777778888888888888775  334567777777777777777776333 33556666


Q ss_pred             CCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          224 LKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       224 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                      |+.|++++|++++..+..+.  ++|+.|++++|+++...+....++.++.+++++|.
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ  455 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence            66666666665544443332  34555555555554222222234444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.1e-32  Score=264.55  Aligned_cols=267  Identities=20%  Similarity=0.247  Sum_probs=221.7

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|+.|+|++|++++..+. .+..++ +|++|++++|.++++.|.+|..+++|++|++++|.++.. |..+.  ++|++|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~--~~L~~L  126 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDG-DFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQEL  126 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTT-TTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSCC--TTCCEE
T ss_pred             CCCeEEECCCCcCCEeChh-hhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhhc--ccccEE
Confidence            5789999999999987765 678888 899999999999988888999999999999999999844 44333  789999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCC--cCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG--SLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      ++++|.+++..+..|..+++|++|++++|.+..  ..+..+..+++|+.|++++|+++.+|..+.  ++|++|++++|.+
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcC
Confidence            999999988777788999999999999999864  667788889999999999999998887654  8899999999999


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      ++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            9888888999999999999999999888888899999999999999998 667788899999999999999998777777


Q ss_pred             cC------CCCCCEEEccCCcCccc--CCC-CCCCCCccccccCCC
Q 010856          243 EK------LSYLENLNLSFNKLEGE--IPR-GGSFGNFSAESFEGN  279 (499)
Q Consensus       243 ~~------l~~L~~L~l~~N~l~~~--~~~-~~~~~~l~~~~l~~N  279 (499)
                      ..      .+.++.+++++|++...  .|. ......++.+++++|
T Consensus       284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            54      37888999999998742  222 123455667777766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.6e-34  Score=299.09  Aligned_cols=276  Identities=24%  Similarity=0.362  Sum_probs=224.9

Q ss_pred             CCCCCCCCEEECcCCCCCcc-----------------CChhccc--cccccccEEEcccCCCcccCCccccCCCCCCEEe
Q 010856            1 MSNCKSLTLIYLSNNPLDGI-----------------LPKTSVG--NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN   61 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~-----------------~~~~~~~--~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~   61 (499)
                      |+++++|++|+|++|.+++.                 .|. .+.  +++ +|++|++++|.+.+.+|..|.++++|++|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            35788999999999999984                 565 666  888 899999999999999999999999999999


Q ss_pred             ccCCc-CCc-cCCccccCC------CCCCeEecccccccccCCc--cccCcccccEEeeecCCCCCcCCccccCCccCCe
Q 010856           62 LGGNK-LNG-SIPITLSKL------QKLQGLGLEDNKLEGSIPD--DICHLAELYRLDLDGNKLSGSLPACFSNLTSLRI  131 (499)
Q Consensus        62 L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  131 (499)
                      +++|+ +++ ..|..+..+      ++|++|++++|+++ .+|.  .+..+++|++|++++|++++.+| .+..+++|+.
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~  357 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS  357 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence            99998 887 677777665      89999999999998 6777  88999999999999999997777 8888889999


Q ss_pred             eeccccCCCCCCccccCCCC-CcEEEcCCCcCCCCCcccccCCC--CccEEEccCCcccccCccccc-------CCcCCc
Q 010856          132 VSLGSNKLTSVPLTFWNLKD-ILNLNFSSNFLTSPLPLEIGNLK--VLIGIDFSMNNFSGVIPTEIG-------GLKNLE  201 (499)
Q Consensus       132 L~L~~n~l~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~-------~l~~L~  201 (499)
                      |++++|+++.+|..+..+++ |++|++++|.++ .+|..+..++  +|+.|++++|.+++..|..+.       .+++|+
T Consensus       358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             EECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             EECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            99999988888888888888 999999999888 4666666654  788888888888888887777       777888


Q ss_pred             eeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCC-------CCCEEEccCCcCcccCCCC-C--CCCCc
Q 010856          202 YLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS-------YLENLNLSFNKLEGEIPRG-G--SFGNF  271 (499)
Q Consensus       202 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~~-~--~~~~l  271 (499)
                      +|++++|.+++..+..+..+++|+.|++++|+++...+..+....       +|+.|++++|+++. +|.. .  .++.+
T Consensus       437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L  515 (636)
T 4eco_A          437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYL  515 (636)
T ss_dssp             EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTC
T ss_pred             EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCc
Confidence            888888888866555667788888888888888855444444333       78888888888884 4433 3  56778


Q ss_pred             cccccCCCcCC
Q 010856          272 SAESFEGNELL  282 (499)
Q Consensus       272 ~~~~l~~N~~~  282 (499)
                      +.+++++|...
T Consensus       516 ~~L~Ls~N~l~  526 (636)
T 4eco_A          516 VGIDLSYNSFS  526 (636)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECCCCCCC
Confidence            88888888743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-32  Score=287.78  Aligned_cols=278  Identities=18%  Similarity=0.181  Sum_probs=190.2

Q ss_pred             CCCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCC
Q 010856            1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQK   80 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   80 (499)
                      |+++++|++|+|++|.++++.|. .+..++ +|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|.++++
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHED-TFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTT-TTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             hccCccceEEECCCCccceeChh-hccCcc-ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            46788888888888888887776 777777 8888888888888888888888888888888888888766777788888


Q ss_pred             CCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCC--eeeccccCC-------------------
Q 010856           81 LQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLR--IVSLGSNKL-------------------  139 (499)
Q Consensus        81 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l-------------------  139 (499)
                      |++|++++|.+++.....+..+++|++|++++|.+++..+..|..+++|+  .|++++|++                   
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~  210 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG  210 (606)
T ss_dssp             CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred             ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence            88888888887765444445577777777777776655555454444444  444444433                   


Q ss_pred             --------------------------------------------------------CCCCc-cccCCCCCcEEEcCCCcC
Q 010856          140 --------------------------------------------------------TSVPL-TFWNLKDILNLNFSSNFL  162 (499)
Q Consensus       140 --------------------------------------------------------~~~~~-~~~~l~~L~~L~l~~n~l  162 (499)
                                                                              +.++. .+..+++|++|++++|.+
T Consensus       211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  290 (606)
T 3t6q_A          211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL  290 (606)
T ss_dssp             TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred             CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence                                                                    33222 255567777777777777


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCC-CccccCCCCCCEEeCCCCcCCccC--c
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI-PDSFGDLISLKFLNLSNNNLSGAI--P  239 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~--~  239 (499)
                      +. +|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++++..  +
T Consensus       291 ~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  369 (606)
T 3t6q_A          291 SE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN  369 (606)
T ss_dssp             SC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred             CC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence            63 5556677777777777777777666666777777777777777666433 334666677777777777666544  5


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcC
Q 010856          240 ASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNEL  281 (499)
Q Consensus       240 ~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~  281 (499)
                      ..+..+++|+.|++++|++++..|.. ...+.++.+++.+|..
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            56666666777777766666555443 3355666666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.2e-33  Score=292.55  Aligned_cols=273  Identities=24%  Similarity=0.273  Sum_probs=230.8

Q ss_pred             CCCCCCEEECcCCCCCccCChhccccccccccEEEcccCC-Ccc-cCCccccCC------CCCCEEeccCCcCCccCCc-
Q 010856            3 NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCN-ISG-GIPEEISNL------TNSTIVNLGGNKLNGSIPI-   73 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~-   73 (499)
                      ++++|++|+|++|.+.+..|. .+.+++ +|++|++++|+ +++ .+|..+..+      ++|++|++++|+++ .+|. 
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~-~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~  323 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPT-FLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE  323 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCT-TTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH
T ss_pred             ccCCCCEEEecCCcCCccChH-HHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch
Confidence            799999999999999999887 888898 89999999998 988 788888776      99999999999999 6777 


Q ss_pred             -cccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCcc-CCeeeccccCCCCCCccccCCC-
Q 010856           74 -TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTS-LRIVSLGSNKLTSVPLTFWNLK-  150 (499)
Q Consensus        74 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~l~-  150 (499)
                       .+.++++|++|++++|.+++.+| .+..+++|++|++++|+++ .+|..+..+++ |+.|++++|+++.+|..+..++ 
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l  401 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV  401 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred             hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence             89999999999999999997888 8999999999999999999 67778999999 9999999999999998777654 


Q ss_pred             -CCcEEEcCCCcCCCCCccccc-------CCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCC
Q 010856          151 -DILNLNFSSNFLTSPLPLEIG-------NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI  222 (499)
Q Consensus       151 -~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  222 (499)
                       +|++|++++|.+++..|..+.       .+++|+.|++++|+++...+..+..+++|++|++++|+++.+.+..+....
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~  481 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN  481 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence             899999999999988888887       778899999999999866555667788899999999988855444444433


Q ss_pred             -------CCCEEeCCCCcCCccCccccc--CCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcC
Q 010856          223 -------SLKFLNLSNNNLSGAIPASLE--KLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       223 -------~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~  281 (499)
                             +|+.|++++|+++ .+|..+.  .+++|+.|++++|++++.......++.++.+++++|+.
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~  548 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD  548 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBC
T ss_pred             ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcc
Confidence                   8888999998888 5666665  88888999999998887333345677888888876653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=6.2e-32  Score=262.63  Aligned_cols=267  Identities=21%  Similarity=0.254  Sum_probs=201.9

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|++++|.+++..+. .+..++ +|++|++++|.+++..|.+|.++++|++|++++|.++.. |..+.  ++|++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~--~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKD-DFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNLP--SSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSCC--TTCCEE
T ss_pred             CCCeEEECCCCcCCccCHh-HhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Ccccc--ccCCEE
Confidence            5688888888888877665 677777 788888888888877788888888888888888888744 33333  678888


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCC--cCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG--SLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      ++++|.++...+..|..+++|++|++++|.++.  ..+..+..+ +|+.|++++|+++.+|..+.  ++|++|++++|.+
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i  205 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKI  205 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcC
Confidence            888888887766678888888888888888853  566677777 88888888888888776554  6788888888888


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      ++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            8777778888888888888888888777777888888888888888888 566678888888888888888887776666


Q ss_pred             cC------CCCCCEEEccCCcCc--ccCCCC-CCCCCccccccCCCc
Q 010856          243 EK------LSYLENLNLSFNKLE--GEIPRG-GSFGNFSAESFEGNE  280 (499)
Q Consensus       243 ~~------l~~L~~L~l~~N~l~--~~~~~~-~~~~~l~~~~l~~N~  280 (499)
                      ..      .++|+.|++++|++.  +..|.. ...+.++.+++++|.
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            54      356788888888886  333322 335566666766653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-32  Score=273.38  Aligned_cols=246  Identities=22%  Similarity=0.171  Sum_probs=177.9

Q ss_pred             ccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEE
Q 010856           29 LSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL  108 (499)
Q Consensus        29 l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  108 (499)
                      ++ +++.|++++|.++.+.+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|
T Consensus        44 l~-~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GC-CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cC-CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            45 89999999999998877778999999999999999998888899999999999999999998888889999999999


Q ss_pred             eeecCCCCCcCCccccCCccCCeeeccccCCCCCC-ccccCCCCCcEEEcCCCcCCCCCcccccCC--------------
Q 010856          109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNL--------------  173 (499)
Q Consensus       109 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------  173 (499)
                      ++++|+++...+..|..+++|++|++++|+++.++ ..+..+++|++|++++|.+++.....+.++              
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            99999999777777899999999999999999864 468899999999999999987543333222              


Q ss_pred             --CCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEE
Q 010856          174 --KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENL  251 (499)
Q Consensus       174 --~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  251 (499)
                        +.|+.|++++|.++... .  ...++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..|..+++|+.|
T Consensus       203 ~~~~L~~L~l~~n~l~~~~-~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVR-G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEE-C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             CCCcceEEECCCCeeeecc-c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence              22333333333333221 1  1123555555555555532  345555555555555555555555555555555555


Q ss_pred             EccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          252 NLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       252 ~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                      ++++|++++..+....++.++.+++++|.
T Consensus       278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          278 YISNNRLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             ECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             ECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence            55555555443333344555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=269.72  Aligned_cols=278  Identities=20%  Similarity=0.189  Sum_probs=238.2

Q ss_pred             CCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         4 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      |+.....+++++.++.++..     ++++|++|++++|+++++.+..|.++++|++|++++|.+++..+..|.++++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~-----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSG-----LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTT-----CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCeEeeCCCCCccccccc-----ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            45666789999999966442     2348999999999999888889999999999999999999888889999999999


Q ss_pred             EecccccccccCCccccCcccccEEeeecCCCCCcCC-ccccCCccCCeeecccc-CCCCC-CccccCCCCCcEEEcCCC
Q 010856           84 LGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP-ACFSNLTSLRIVSLGSN-KLTSV-PLTFWNLKDILNLNFSSN  160 (499)
Q Consensus        84 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~l~~L~~L~l~~n  160 (499)
                      |++++|++++..+..|.++++|++|++++|+++...+ ..+..+++|++|++++| .++.+ +..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            9999999997666669999999999999999997655 58899999999999999 57775 457889999999999999


Q ss_pred             cCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcccc---CCCCCCEEeCCCCcCCc-
Q 010856          161 FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG---DLISLKFLNLSNNNLSG-  236 (499)
Q Consensus       161 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~l~~N~l~~-  236 (499)
                      .+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+.   ..+.++.++++++.+++ 
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            99998899999999999999999999866555566789999999999999976655443   46778999999998875 


Q ss_pred             ---cCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCC
Q 010856          237 ---AIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       237 ---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~  286 (499)
                         ..|..+..+++|+.|++++|+++...+.. ..+++++.+++.+|++.|+|+
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence               35677889999999999999999544443 568899999999999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.4e-32  Score=283.04  Aligned_cols=120  Identities=19%  Similarity=0.263  Sum_probs=72.2

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGS-IPITLSKLQK   80 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~   80 (499)
                      +++++|++|+|++|++++..+. .+..++ +|++|++++|.+++..+..|.++++|++|++++|.+++. .|..+.++++
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGD-AFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTT-TTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hcCCcccEEECCCCCcCccChh-hccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            4566666666666666665554 555565 666666666666666555566666666666666666642 3445666666


Q ss_pred             CCeEeccccc-ccccCCccccCcccccEEeeecCCCCCcCCccc
Q 010856           81 LQGLGLEDNK-LEGSIPDDICHLAELYRLDLDGNKLSGSLPACF  123 (499)
Q Consensus        81 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  123 (499)
                      |++|++++|. +....+..|.++++|++|++++|.+++..|..+
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            6666666665 333333455666666666666666655444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=1.9e-31  Score=270.39  Aligned_cols=249  Identities=23%  Similarity=0.272  Sum_probs=177.4

Q ss_pred             CCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEec
Q 010856            7 LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGL   86 (499)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   86 (499)
                      ...++.+++.++.++..     +++++++|+|++|+++++.+..|.++++|++|+|++|.++++.+..|.++++|++|+|
T Consensus        56 ~~~v~c~~~~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQG-----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCSSCCSC-----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcCccCCC-----CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            45677777777644321     2347777777777777777777777777777777777777777777777777777777


Q ss_pred             ccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccc-cCCCCCCc-cccCCCCCcEEEcCCCcCCC
Q 010856           87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGS-NKLTSVPL-TFWNLKDILNLNFSSNFLTS  164 (499)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~l~~L~~L~l~~n~l~~  164 (499)
                      ++|+++...+..|..+++|++|+|++|+++...+..|..+++|+.|++++ |.+..++. .+..+++|++|++++|.+++
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            77777766666677777777777777777766666777777777777777 34444544 46667777777777777765


Q ss_pred             CCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccC
Q 010856          165 PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEK  244 (499)
Q Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  244 (499)
                      . | .+..+++|+.|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            4 2 4666777777777777777777777777777777777777777766777777777777777777777666666777


Q ss_pred             CCCCCEEEccCCcCcccC
Q 010856          245 LSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       245 l~~L~~L~l~~N~l~~~~  262 (499)
                      +++|+.|++++|++.+..
T Consensus       289 l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CTTCCEEECCSSCEECST
T ss_pred             ccCCCEEEccCCCcCCCC
Confidence            777777777777766543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.98  E-value=2.5e-31  Score=268.44  Aligned_cols=246  Identities=24%  Similarity=0.264  Sum_probs=130.9

Q ss_pred             CEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecc
Q 010856            8 TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE   87 (499)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   87 (499)
                      +.++.+++.++.++..     ++.+++.|+|++|+++.+.+..|.++++|++|+|++|.++.+.+..|.++++|++|+|+
T Consensus        46 ~~v~c~~~~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           46 SKVICVRKNLREVPDG-----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             CEEECCSCCCSSCCSC-----CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CEEEeCCCCcCcCCCC-----CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4455555555533221     12355555555555555555555555555555555555555555555555555555555


Q ss_pred             cccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecccc-CCCCCCc-cccCCCCCcEEEcCCCcCCCC
Q 010856           88 DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSN-KLTSVPL-TFWNLKDILNLNFSSNFLTSP  165 (499)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  165 (499)
                      +|+++...+..|..+++|++|+|++|+++...+..|..+++|+.|++++| .+..++. .+..+++|++|++++|.++.+
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            55555444445555555555555555555555555555555555555552 3333332 344555555555555555532


Q ss_pred             CcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCC
Q 010856          166 LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKL  245 (499)
Q Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l  245 (499)
                       | .+..+++|+.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+
T Consensus       201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence             2 34455555555555555555555555555555555555555555555555555555555555555555554555555


Q ss_pred             CCCCEEEccCCcCcc
Q 010856          246 SYLENLNLSFNKLEG  260 (499)
Q Consensus       246 ~~L~~L~l~~N~l~~  260 (499)
                      ++|+.|+|++|++.+
T Consensus       279 ~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEcCCCCccC
Confidence            555555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.98  E-value=1.7e-32  Score=263.47  Aligned_cols=250  Identities=20%  Similarity=0.185  Sum_probs=198.2

Q ss_pred             CEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccC--CccccCCCCCCeEe
Q 010856            8 TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSI--PITLSKLQKLQGLG   85 (499)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~   85 (499)
                      +.++++++.++.++..     ++++|++|++++|+++.+.+..|.++++|++|+|++|.++...  +..+..+++|++|+
T Consensus        10 ~~l~c~~~~l~~ip~~-----~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG-----IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCSSCCSC-----CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcccCCCC-----CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            5788888888755432     2347889999999888766667888889999999998887432  45666788888899


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCC-ccccCCccCCeeeccccCCCC-CCccccCCCCCcEEEcCCCcCC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~  163 (499)
                      +++|.++. ++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.++. .+..+..+++|++|++++|.++
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            98888874 55668888888888888888886655 577888888888888888876 4556777888888888888887


Q ss_pred             C-CCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          164 S-PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       164 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      + ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            5 467778888888888888888887777888888888888888888887777778888888888888888888888888


Q ss_pred             cCCC-CCCEEEccCCcCcccCC
Q 010856          243 EKLS-YLENLNLSFNKLEGEIP  263 (499)
Q Consensus       243 ~~l~-~L~~L~l~~N~l~~~~~  263 (499)
                      ..++ +|+.|++++|++++..+
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGG
T ss_pred             HhhhccCCEEEccCCCeecccC
Confidence            8774 88888888888876543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=3.3e-31  Score=259.23  Aligned_cols=260  Identities=25%  Similarity=0.377  Sum_probs=165.5

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKL   81 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   81 (499)
                      ..+++|++|++++|.+++..+   +..++ +|++|++++|.+++.  ++|..+++|++|++++|.+++..+  +..+++|
T Consensus        63 ~~~~~L~~L~l~~n~i~~~~~---~~~l~-~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L  134 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITDISP---LSNLV-KLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKM  134 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTC
T ss_pred             hhcCCccEEEccCCccccchh---hhcCC-cCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCce
Confidence            467889999999998886533   66677 899999999888854  368888899999999888885433  7788888


Q ss_pred             CeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCc
Q 010856           82 QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNF  161 (499)
Q Consensus        82 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  161 (499)
                      ++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus       135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC
Confidence            88888888554333 347777777888887777775433  6667777777777777776654 5555666666666666


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCccc
Q 010856          162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS  241 (499)
Q Consensus       162 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  241 (499)
                      +++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..
T Consensus       211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~  282 (347)
T 4fmz_A          211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV  282 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred             CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence            554332  4555556666666665554332  55555555555555555532  3455555555555555555543  23


Q ss_pred             ccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcC
Q 010856          242 LEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNEL  281 (499)
Q Consensus       242 ~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~  281 (499)
                      +..+++|+.|++++|++++..+.. ..+++++.+++++|++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            455555555555555555443321 2344555555555553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.98  E-value=2.7e-31  Score=268.26  Aligned_cols=251  Identities=22%  Similarity=0.269  Sum_probs=227.4

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      ....++.+++.++ .+|..+.  ++++.|+|++|+++.+.+..|.++++|++|+|++|.++...+..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            5678999999998 4555554  689999999999999888999999999999999999998888999999999999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCC-CcCCCCCcccccCCCCccEEEccCCccccc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSS-NFLTSPLPLEIGNLKVLIGIDFSMNNFSGV  189 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (499)
                      +|+++...+..|..+++|++|++++|+++.++. .+..+++|++|++++ |.+..+.+..|.++++|+.|++++|.++..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            999998888899999999999999999999765 688899999999999 456666667899999999999999999855


Q ss_pred             CcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCC
Q 010856          190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSF  268 (499)
Q Consensus       190 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~  268 (499)
                       | .+..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.. ..+
T Consensus       201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence             3 5889999999999999999999999999999999999999999999999999999999999999999766654 457


Q ss_pred             CCccccccCCCcCCCCCCC
Q 010856          269 GNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       269 ~~l~~~~l~~N~~~c~~~~  287 (499)
                      +.++.+++.+|||.|+|..
T Consensus       279 ~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          279 HHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTCCEEECCSSCEECSSTT
T ss_pred             cCCCEEEcCCCCccCCCCc
Confidence            8899999999999999854

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=2.1e-31  Score=290.16  Aligned_cols=274  Identities=20%  Similarity=0.222  Sum_probs=152.4

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCcc--ccCCC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPIT--LSKLQ   79 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~   79 (499)
                      +++++|++|+|++|...+..+...+.+++ +|++|+|++|.+++..|++|.++++|++|+|++|.+++..+..  |.+++
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             cccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            34445555555554332222112444454 5555555555555555555555555555555555555433322  55555


Q ss_pred             CCCeEecccccccccCC-ccccCcccccEEeeecCCCCCcCCccccCC--cc----------------------------
Q 010856           80 KLQGLGLEDNKLEGSIP-DDICHLAELYRLDLDGNKLSGSLPACFSNL--TS----------------------------  128 (499)
Q Consensus        80 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~----------------------------  128 (499)
                      +|++|+|++|.+++..+ ..|.++++|++|++++|.+++..+..+..+  ++                            
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  203 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN  203 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence            55555555555544332 345555555555555555544443333322  22                            


Q ss_pred             --CCeeeccccCCCC-CCccc------------------------------------cC--CCCCcEEEcCCCcCCCCCc
Q 010856          129 --LRIVSLGSNKLTS-VPLTF------------------------------------WN--LKDILNLNFSSNFLTSPLP  167 (499)
Q Consensus       129 --L~~L~L~~n~l~~-~~~~~------------------------------------~~--l~~L~~L~l~~n~l~~~~~  167 (499)
                        |+.|++++|.++. .+..+                                    ..  .++|+.|++++|.+.+..+
T Consensus       204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~  283 (844)
T 3j0a_A          204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS  283 (844)
T ss_dssp             CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred             CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence              3333333332221 11000                                    00  1456666666666666666


Q ss_pred             ccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCC
Q 010856          168 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSY  247 (499)
Q Consensus       168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  247 (499)
                      ..|..+++|+.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|++....+..|..+++
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  363 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK  363 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence            66777777777777777777776777777777777777777777666777777777777777777777666667777777


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          248 LENLNLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       248 L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                      |+.|++++|.+++...    ++.+..+.+.+|.
T Consensus       364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~  392 (844)
T 3j0a_A          364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNK  392 (844)
T ss_dssp             CCEEEEETCCSCCCSS----CCSCSEEEEESCC
T ss_pred             CCEEECCCCCCCcccC----CCCcchhccCCCC
Confidence            7777777777764321    3344444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.98  E-value=2.9e-31  Score=268.94  Aligned_cols=251  Identities=24%  Similarity=0.240  Sum_probs=227.6

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      ....++.+++.++. +|..+.  ++|++|+|++|+++++.+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            46789999999984 555554  689999999999999989999999999999999999998888999999999999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCC-CcCCCCCcccccCCCCccEEEccCCccccc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSS-NFLTSPLPLEIGNLKVLIGIDFSMNNFSGV  189 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (499)
                      +|+++...+..|..+++|++|++++|+++.++. .+..+++|++|++++ |.+..+.+..|.++++|+.|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            999998888889999999999999999999765 688999999999999 566666667899999999999999999865


Q ss_pred             CcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCC
Q 010856          190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSF  268 (499)
Q Consensus       190 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~  268 (499)
                        ..+..+++|++|+|++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.. ..+
T Consensus       212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence              35889999999999999999999999999999999999999999999999999999999999999999766654 457


Q ss_pred             CCccccccCCCcCCCCCCC
Q 010856          269 GNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       269 ~~l~~~~l~~N~~~c~~~~  287 (499)
                      +++..+++.+|||.|+|..
T Consensus       290 ~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          290 RYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTCCEEECCSSCEECSTTT
T ss_pred             cCCCEEEccCCCcCCCCCc
Confidence            8899999999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.98  E-value=6.3e-31  Score=280.49  Aligned_cols=253  Identities=25%  Similarity=0.250  Sum_probs=204.4

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      +++++|+|++|.+++..+. .+.+++ +|++|++++|.+++..|.+|.++++|++|+|++|.++.+.+..|.++++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA-NFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG-GGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHH-HHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            5789999999999977665 788888 89999999999998889999999999999999999997777789999999999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc---ccCCCCCcEEEcCCCc
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT---FWNLKDILNLNFSSNF  161 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~l~~n~  161 (499)
                      ++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++.++..   ...+++|++|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999999877778899999999999999999988888888999999999999999886543   3356889999999998


Q ss_pred             CCCCCcccccCC---------------------------CCccEEEccCCcccccCcccccCCcC--CceeeCcCCcCCC
Q 010856          162 LTSPLPLEIGNL---------------------------KVLIGIDFSMNNFSGVIPTEIGGLKN--LEYLFLGYNRLQG  212 (499)
Q Consensus       162 l~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~  212 (499)
                      +++..+..+..+                           ++|+.|++++|.+++..+..|.+++.  |++|++++|.+++
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            888777655543                           45666777777777777777776654  8888888887777


Q ss_pred             CCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          213 SIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       213 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      ..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|...
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence            77777777778888888888777766666666666666666655443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.98  E-value=2.2e-31  Score=274.96  Aligned_cols=269  Identities=21%  Similarity=0.212  Sum_probs=169.4

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|+|++|.+++..+. .+..++ +|++|++++|++++..|.+|.++++|++|+|++|+++. +|..  .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTS-DILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHH-HHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEE
T ss_pred             ccccEEECCCCcccccChh-hccccc-cccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEE
Confidence            4677777777777766554 566666 67777777777777767777777777777777777774 3333  66777777


Q ss_pred             eccccccccc-CCccccCcccccEEeeecCCCCCcCCccccCCccC--CeeeccccCC--CC-CCccccCC---------
Q 010856           85 GLEDNKLEGS-IPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL--RIVSLGSNKL--TS-VPLTFWNL---------  149 (499)
Q Consensus        85 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~-~~~~~~~l---------  149 (499)
                      +|++|.+++. .|..|..+++|++|++++|.+++   ..+..+++|  +.|++++|.+  .. .|..+..+         
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            7777777652 45667777777777777666653   122333333  3333333333  11 11111110         


Q ss_pred             --------------------------------------------------------------------------CCCcEE
Q 010856          150 --------------------------------------------------------------------------KDILNL  155 (499)
Q Consensus       150 --------------------------------------------------------------------------~~L~~L  155 (499)
                                                                                                ++|++|
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                                                                                      123333


Q ss_pred             EcCCCcCCCCCccc-----------------------------------------------------ccCCCCccEEEcc
Q 010856          156 NFSSNFLTSPLPLE-----------------------------------------------------IGNLKVLIGIDFS  182 (499)
Q Consensus       156 ~l~~n~l~~~~~~~-----------------------------------------------------~~~l~~L~~L~l~  182 (499)
                      ++++|.+++..|..                                                     +..+++|++|+++
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls  332 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS  332 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence            33333322211111                                                     1566778888888


Q ss_pred             CCcccccCcccccCCcCCceeeCcCCcCCC--CCCccccCCCCCCEEeCCCCcCCc-cCcccccCCCCCCEEEccCCcCc
Q 010856          183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQG--SIPDSFGDLISLKFLNLSNNNLSG-AIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      +|++++..|..+..+++|++|++++|++++  ..|..+..+++|+.|++++|++++ ..+..+..+++|+.|++++|+++
T Consensus       333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            888887777778888888888888888875  334667788888888888888876 33345777788888888888887


Q ss_pred             ccCCCCCCCCCccccccCCCcCC
Q 010856          260 GEIPRGGSFGNFSAESFEGNELL  282 (499)
Q Consensus       260 ~~~~~~~~~~~l~~~~l~~N~~~  282 (499)
                      +..|.... +.++.+++++|...
T Consensus       413 ~~~~~~l~-~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          413 DTIFRCLP-PRIKVLDLHSNKIK  434 (520)
T ss_dssp             GGGGGSCC-TTCCEEECCSSCCC
T ss_pred             cchhhhhc-ccCCEEECCCCccc
Confidence            66655422 57777888877654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=5.6e-31  Score=274.41  Aligned_cols=269  Identities=19%  Similarity=0.165  Sum_probs=199.7

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|+|++|.+++..+. .+..++ +|++|++++|.++++.|++|.++++|++|+|++|+++.+ |..  .+++|++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP-DISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC--PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG-GTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC--CCTTCSEE
T ss_pred             CCcCEEECCCCCccccChh-hhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc--ccccCCEE
Confidence            5677888888888766655 677777 788888888888777777788888888888888887743 333  67778888


Q ss_pred             eccccccccc-CCccccCcccccEEeeecCCCCCcCCccccCCccC--CeeeccccCC--CC-CCccccCC---------
Q 010856           85 GLEDNKLEGS-IPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL--RIVSLGSNKL--TS-VPLTFWNL---------  149 (499)
Q Consensus        85 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~-~~~~~~~l---------  149 (499)
                      ++++|++++. .|..|.++++|++|++++|++++.   .+..+++|  +.|++++|++  +. .|..+..+         
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            8888887753 346777788888888888777642   33444444  6677766666  32 22222221         


Q ss_pred             ------------------------------------------------------------------------CCCcEEEc
Q 010856          150 ------------------------------------------------------------------------KDILNLNF  157 (499)
Q Consensus       150 ------------------------------------------------------------------------~~L~~L~l  157 (499)
                                                                                              ++|++|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence                                                                                    15666666


Q ss_pred             CCCcCCCCCcccc-----------------------------------------------------cCCCCccEEEccCC
Q 010856          158 SSNFLTSPLPLEI-----------------------------------------------------GNLKVLIGIDFSMN  184 (499)
Q Consensus       158 ~~n~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~n  184 (499)
                      ++|.+++.+|..+                                                     ..+++|++|++++|
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n  363 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN  363 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence            6666665444433                                                     67889999999999


Q ss_pred             cccccCcccccCCcCCceeeCcCCcCCCCC--CccccCCCCCCEEeCCCCcCCc-cCcccccCCCCCCEEEccCCcCccc
Q 010856          185 NFSGVIPTEIGGLKNLEYLFLGYNRLQGSI--PDSFGDLISLKFLNLSNNNLSG-AIPASLEKLSYLENLNLSFNKLEGE  261 (499)
Q Consensus       185 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~  261 (499)
                      .+++..|..+..+++|++|++++|++++..  |..+..+++|+.|++++|++++ ..+..+..+++|+.|++++|++++.
T Consensus       364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS  443 (562)
T ss_dssp             CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred             ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence            999988999999999999999999999743  4678999999999999999998 5555688889999999999999877


Q ss_pred             CCCCCCCCCccccccCCCcCC
Q 010856          262 IPRGGSFGNFSAESFEGNELL  282 (499)
Q Consensus       262 ~~~~~~~~~l~~~~l~~N~~~  282 (499)
                      .|.... +.++.+++++|...
T Consensus       444 ~~~~l~-~~L~~L~L~~N~l~  463 (562)
T 3a79_B          444 VFRCLP-PKVKVLDLHNNRIM  463 (562)
T ss_dssp             GGSSCC-TTCSEEECCSSCCC
T ss_pred             hhhhhc-CcCCEEECCCCcCc
Confidence            665432 57888888888654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=1.8e-31  Score=286.70  Aligned_cols=271  Identities=22%  Similarity=0.246  Sum_probs=213.5

Q ss_pred             CCCCCCEEECcCCCCCccCChhccccccccccEEEcccCC-Ccc-cCCccccCCC-------CCCEEeccCCcCCccCCc
Q 010856            3 NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCN-ISG-GIPEEISNLT-------NSTIVNLGGNKLNGSIPI   73 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~   73 (499)
                      ++++|++|+|++|.+.+..|. .+.+++ +|++|+|++|+ +++ .+|..+..++       +|++|+|++|.++ .+|.
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~-~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPD-FLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCG-GGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             cCCCCCEEECcCCCCCccChH-HHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence            799999999999999999997 888998 99999999998 887 7777666554       9999999999999 6777


Q ss_pred             --cccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCcc-CCeeeccccCCCCCCccccCCC
Q 010856           74 --TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTS-LRIVSLGSNKLTSVPLTFWNLK  150 (499)
Q Consensus        74 --~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~l~  150 (499)
                        .|.++++|+.|+|++|+++ .+| .|..+++|+.|+|++|+++ .+|..+..+++ |+.|++++|+++.+|..+..++
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~  642 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS  642 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC
T ss_pred             hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccc
Confidence              8999999999999999999 667 8999999999999999999 77888999998 9999999999999988776665


Q ss_pred             C--CcEEEcCCCcCCCCCcccc---c--CCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCC--
Q 010856          151 D--ILNLNFSSNFLTSPLPLEI---G--NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL--  221 (499)
Q Consensus       151 ~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--  221 (499)
                      .  |+.|++++|.+++.+|...   .  .+++|+.|++++|.++...+..+..+++|+.|+|++|+++.+.+..+...  
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~  722 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG  722 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence            4  8889999988877544322   2  33478888888888875444444577788888888887774433333322  


Q ss_pred             -----CCCCEEeCCCCcCCccCccccc--CCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          222 -----ISLKFLNLSNNNLSGAIPASLE--KLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       222 -----~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                           ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++..+....+++++.+++++|+
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred             cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence                 27788888888777 4555665  7778888888888887643334456677777777765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=3.5e-31  Score=278.66  Aligned_cols=119  Identities=22%  Similarity=0.237  Sum_probs=91.9

Q ss_pred             CCCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCC
Q 010856            1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQK   80 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   80 (499)
                      |+++++|++|+|++|.++++.|. .+.+++ +|++|+|++|.+++..|.+|.++++|++|++++|.+++..+..+.++++
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDK-AWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTT-TTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             ccCCccCcEEeCCCCcccccCHH-Hhhchh-hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence            45677888888888888877665 667777 7888888888888777788888888888888888887776677888888


Q ss_pred             CCeEecccccccc-cCCccccCcccccEEeeecCCCCCcCCc
Q 010856           81 LQGLGLEDNKLEG-SIPDDICHLAELYRLDLDGNKLSGSLPA  121 (499)
Q Consensus        81 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~  121 (499)
                      |++|++++|.+.+ .+|..|.++++|++|++++|++++..+.
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            8888888888775 3577788888888888888877655443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=8.1e-32  Score=289.28  Aligned_cols=275  Identities=24%  Similarity=0.330  Sum_probs=234.1

Q ss_pred             CCCCCCCCEEECcCCCCCc-----------------cCChhccc--cccccccEEEcccCCCcccCCccccCCCCCCEEe
Q 010856            1 MSNCKSLTLIYLSNNPLDG-----------------ILPKTSVG--NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN   61 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~--~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~   61 (499)
                      |++|++|++|+|++|.+++                 ..|. .++  +++ +|++|+|++|.+.+.+|..|.++++|++|+
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            3578999999999999998                 2565 555  888 899999999999999999999999999999


Q ss_pred             ccCCc-CCc-cCCccccC-------CCCCCeEecccccccccCCc--cccCcccccEEeeecCCCCCcCCccccCCccCC
Q 010856           62 LGGNK-LNG-SIPITLSK-------LQKLQGLGLEDNKLEGSIPD--DICHLAELYRLDLDGNKLSGSLPACFSNLTSLR  130 (499)
Q Consensus        62 L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  130 (499)
                      |++|+ +++ ..|..+..       +++|+.|+|++|.++ .+|.  .+..+++|+.|+|++|+++ .+| .|..+++|+
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~  598 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT  598 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence            99998 887 66765544       459999999999999 7777  8999999999999999999 666 899999999


Q ss_pred             eeeccccCCCCCCccccCCCC-CcEEEcCCCcCCCCCcccccCCCC--ccEEEccCCcccccCcccc---c--CCcCCce
Q 010856          131 IVSLGSNKLTSVPLTFWNLKD-ILNLNFSSNFLTSPLPLEIGNLKV--LIGIDFSMNNFSGVIPTEI---G--GLKNLEY  202 (499)
Q Consensus       131 ~L~L~~n~l~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~l---~--~l~~L~~  202 (499)
                      .|++++|+++.+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++++..|...   .  .+++|+.
T Consensus       599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             EEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            999999999999999999999 999999999999 56777777654  9999999999987665332   2  3458999


Q ss_pred             eeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCC-------CCCCEEEccCCcCcccCCCC-C--CCCCcc
Q 010856          203 LFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKL-------SYLENLNLSFNKLEGEIPRG-G--SFGNFS  272 (499)
Q Consensus       203 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l-------~~L~~L~l~~N~l~~~~~~~-~--~~~~l~  272 (499)
                      |++++|.++.+.+..+..+++|+.|+|++|+++...+..+...       ++|+.|+|++|+++. +|.. .  .+++++
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~  756 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLS  756 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCC
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcC
Confidence            9999999995554556689999999999999995544444433       399999999999994 5543 3  688999


Q ss_pred             ccccCCCcCC
Q 010856          273 AESFEGNELL  282 (499)
Q Consensus       273 ~~~l~~N~~~  282 (499)
                      .+++++|...
T Consensus       757 ~L~Ls~N~L~  766 (876)
T 4ecn_A          757 NMDVSYNCFS  766 (876)
T ss_dssp             EEECCSSCCS
T ss_pred             EEEeCCCCCC
Confidence            9999999754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=5.4e-31  Score=276.13  Aligned_cols=248  Identities=22%  Similarity=0.200  Sum_probs=179.0

Q ss_pred             ccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEE
Q 010856           29 LSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL  108 (499)
Q Consensus        29 l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  108 (499)
                      ++ +++.|++++|.+..+.+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus        50 l~-~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GC-CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CC-CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            44 89999999999998888889999999999999999999888899999999999999999999888889999999999


Q ss_pred             eeecCCCCCcCCccccCCccCCeeeccccCCCCCC-ccccCCCCCcEEEcCCCcCCCCCcccccCC--------------
Q 010856          109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNL--------------  173 (499)
Q Consensus       109 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------  173 (499)
                      +|++|.+++.++..|..+++|++|++++|.++.++ ..+..+++|++|++++|.+++.....+.++              
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            99999999888888899999999999999999965 468899999999999999987543333222              


Q ss_pred             --C---------------------CccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCC
Q 010856          174 --K---------------------VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLS  230 (499)
Q Consensus       174 --~---------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  230 (499)
                        +                     +|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|+
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence              1                     23333333333332  2334455555555555555555555555555555555555


Q ss_pred             CCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          231 NNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       231 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                      +|.+++ .|..+..+++|+.|+|++|++++..+....++.+..+++.+|+
T Consensus       287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             TSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             CCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence            555553 2333444555555555555555332222334455555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=2.3e-31  Score=252.93  Aligned_cols=250  Identities=24%  Similarity=0.221  Sum_probs=133.6

Q ss_pred             CEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecc
Q 010856            8 TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE   87 (499)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   87 (499)
                      ++++++++.++.++..     ++++|++|++++|.++++.+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~~~c~~~~l~~ip~~-----~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSSCCTT-----CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcccCCcC-----CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            3455555555543221     12255556665555555555555555555555555555555555555555555555555


Q ss_pred             ccc-ccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCC
Q 010856           88 DNK-LEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPL  166 (499)
Q Consensus        88 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (499)
                      +|. ++...+..|..+++|++|++++|++++..+..+..+++|++|++++|+++.                       ..
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~  145 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----------------------LP  145 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CC
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----------------------cC
Confidence            554 444444455555555555555555554444444445555555555554444                       44


Q ss_pred             cccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCC
Q 010856          167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS  246 (499)
Q Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~  246 (499)
                      +..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..++
T Consensus       146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            44455555555555555555544444555556666666666666555555566666666666666666655555566666


Q ss_pred             CCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCC
Q 010856          247 YLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       247 ~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~  285 (499)
                      +|+.|++++|++.+..+....+..+.......+...|..
T Consensus       226 ~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          226 ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             TCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             ccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence            666666666666554433222223333444445545543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=2.2e-31  Score=253.05  Aligned_cols=227  Identities=23%  Similarity=0.235  Sum_probs=180.5

Q ss_pred             CEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecccc
Q 010856           58 TIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSN  137 (499)
Q Consensus        58 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  137 (499)
                      ++++.+++.++.+ |..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4555666555532 3222  345666666666666555556666666666666666666666666777777777777777


Q ss_pred             C-CCCC-CccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCC
Q 010856          138 K-LTSV-PLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP  215 (499)
Q Consensus       138 ~-l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  215 (499)
                      . ++.+ +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 6665 5567777888888888888887778888999999999999999998888889999999999999999998888


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCC-CCCCCCccccccCCCcCCCCCCC
Q 010856          216 DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGSPN  287 (499)
Q Consensus       216 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~l~~~~l~~N~~~c~~~~  287 (499)
                      ..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+. ...++.++.+++.+|++.|+|+.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            8899999999999999999999899999999999999999999976654 35678899999999999998864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=7.3e-32  Score=264.42  Aligned_cols=257  Identities=16%  Similarity=0.164  Sum_probs=225.0

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|++++|.++++.+. .+..++ +|++|++++|.+++..+.+|.++++|++|++++|++++..+..|.++++|++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNS-DLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCcccCHH-HhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            5899999999999987765 788888 99999999999999989999999999999999999997766679999999999


Q ss_pred             ecccccccccCC-ccccCcccccEEeeecC-CCCCcCCccccCCccCCeeeccccCCCCC-CccccCCCCCcEEEcCCCc
Q 010856           85 GLEDNKLEGSIP-DDICHLAELYRLDLDGN-KLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNF  161 (499)
Q Consensus        85 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~  161 (499)
                      ++++|+++...+ ..+..+++|++|++++| .+....+..|..+++|+.|++++|+++.+ |..+..+++|++|++++|.
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            999999996555 57899999999999999 57777788999999999999999999984 7789999999999999999


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccccCccccc---CCcCCceeeCcCCcCCC----CCCccccCCCCCCEEeCCCCcC
Q 010856          162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG---GLKNLEYLFLGYNRLQG----SIPDSFGDLISLKFLNLSNNNL  234 (499)
Q Consensus       162 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l  234 (499)
                      ++......+..+++|+.|++++|.+++..+..+.   ..+.++.++++++.+.+    .+|..+..+++|+.|++++|++
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred             cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence            9865555566789999999999999987655443   45678889999888875    3567789999999999999999


Q ss_pred             CccCcccccCCCCCCEEEccCCcCcccCC
Q 010856          235 SGAIPASLEKLSYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       235 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  263 (499)
                      +...+..|..+++|++|++++|++++..|
T Consensus       290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            96666667999999999999999998765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=5.1e-31  Score=253.19  Aligned_cols=251  Identities=23%  Similarity=0.308  Sum_probs=223.1

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccC--CccccCcccccEEe
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSI--PDDICHLAELYRLD  109 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~  109 (499)
                      .-+.++++++.++. +|..+.  ++|++|+|++|+++.+.+..|.++++|++|+|++|.++...  +..+..+++|++|+
T Consensus         8 ~~~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            8 SGTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             ETTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CCCEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            35679999999984 454443  68999999999999777777899999999999999998442  56677899999999


Q ss_pred             eecCCCCCcCCccccCCccCCeeeccccCCCCCCc--cccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCccc
Q 010856          110 LDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL--TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFS  187 (499)
Q Consensus       110 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  187 (499)
                      +++|.++. .+..+..+++|++|++++|+++.++.  .+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            99999994 56668899999999999999999764  7889999999999999999888888999999999999999998


Q ss_pred             c-cCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-
Q 010856          188 G-VIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-  265 (499)
Q Consensus       188 ~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-  265 (499)
                      + ..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|.. 
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            7 57888999999999999999999888999999999999999999999888888999999999999999999887765 


Q ss_pred             CCC-CCccccccCCCcCCCCCC
Q 010856          266 GSF-GNFSAESFEGNELLCGSP  286 (499)
Q Consensus       266 ~~~-~~l~~~~l~~N~~~c~~~  286 (499)
                      ..+ +.+..+++.+|++.|+|.
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGG
T ss_pred             HhhhccCCEEEccCCCeecccC
Confidence            345 489999999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.9e-30  Score=253.79  Aligned_cols=258  Identities=23%  Similarity=0.397  Sum_probs=195.8

Q ss_pred             CCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCC
Q 010856            3 NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQ   82 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   82 (499)
                      .+++|++|++++|.+... +  .+..++ +|++|++++|.+++..+  |..+++|++|++++|.++..  ..+..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~~~-~--~~~~~~-~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASI-Q--GIEYLT-NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCCCC-T--TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             hcccccEEEEeCCccccc-h--hhhhcC-CccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            457788888888888754 2  355666 78888888888875543  78888888888888888753  3578888888


Q ss_pred             eEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcC
Q 010856           83 GLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        83 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      +|++++|.+++..+  +..+++|++|++++|......+ .+..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence            88888888875433  7788888888888886554433 47788888888888888887665 77788888888888888


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      ++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++.  ..+
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence            76433  7778888888888888876544  7778888888888888875533  77888888888888888754  467


Q ss_pred             cCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcC
Q 010856          243 EKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       243 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~  281 (499)
                      ..+++|+.|++++|++++. +....+++++.+++.+|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred             hcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcC
Confidence            7888888888888888754 4455667788888888864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=2.5e-31  Score=276.52  Aligned_cols=273  Identities=19%  Similarity=0.148  Sum_probs=194.6

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|+|++|++++..+. .+..++ +|++|++++|.+++..|++|.++++|++|++++|.+++..+..|.++++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG-DLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS-TTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccChh-hhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            5899999999999988776 788888 89999999999999999999999999999999999998888889999999999


Q ss_pred             eccccccccc-CCccccCcccccEEeeecCC-CCCcCCccccCCccCCeeeccccCCCC-CCccccC-------------
Q 010856           85 GLEDNKLEGS-IPDDICHLAELYRLDLDGNK-LSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWN-------------  148 (499)
Q Consensus        85 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-------------  148 (499)
                      ++++|.+++. .|..+.++++|++|++++|. +....+..|.++++|++|++++|+++. .|..+..             
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            9999999864 46789999999999999998 554555789999999999999999987 5555544             


Q ss_pred             -----------CCCCcEEEcCCCcCCCCC--cc-cccCC-----------------------------------------
Q 010856          149 -----------LKDILNLNFSSNFLTSPL--PL-EIGNL-----------------------------------------  173 (499)
Q Consensus       149 -----------l~~L~~L~l~~n~l~~~~--~~-~~~~l-----------------------------------------  173 (499)
                                 +++|++|++++|.+++..  +. ....+                                         
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence                       456666666666665421  00 00011                                         


Q ss_pred             ----------------------------------------------CCccEEEccCCcccccCcccc-cCCcCCceeeCc
Q 010856          174 ----------------------------------------------KVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLG  206 (499)
Q Consensus       174 ----------------------------------------------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~  206 (499)
                                                                    .+|+.|++++|.++. .|..+ ..+++|++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECC
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEcc
Confidence                                                          123333333333331 22222 346666666666


Q ss_pred             CCcCCCCCC---ccccCCCCCCEEeCCCCcCCccCc--ccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          207 YNRLQGSIP---DSFGDLISLKFLNLSNNNLSGAIP--ASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       207 ~n~l~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                      +|++++..+   ..+..+++|+.|++++|++++..+  ..+..+++|+.|++++|++++..+.....+.++.+++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC
Confidence            666665432   235566667777777776664432  34666677777777777776433333445566666666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.7e-30  Score=250.07  Aligned_cols=224  Identities=20%  Similarity=0.247  Sum_probs=195.6

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            7888888888888 55667777888888888888888 67777888888888888888888 667788888888888888


Q ss_pred             cCCCCCcCCccccC---------CccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEcc
Q 010856          112 GNKLSGSLPACFSN---------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS  182 (499)
Q Consensus       112 ~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  182 (499)
                      +|++.+..|..+..         +++|++|++++|+++.+|..+..+++|++|++++|.+++ .|..+..+++|+.|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence            88877777776654         899999999999999999889999999999999999986 45578899999999999


Q ss_pred             CCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      +|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99998889999999999999999999988889999999999999999999999999999999999999999988765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=269.86  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=90.5

Q ss_pred             CCCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCC
Q 010856            1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQK   80 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   80 (499)
                      |.++++|++|+|++|+++++.+. .+..++ +|++|++++|.+++..|.+|.++++|++|++++|.++...+..+.++++
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDG-AYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTT-TTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             hhCCCCceEEECCCCcCCccCcc-cccCch-hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence            45677888888888888776665 677777 7888888888888777778888888888888888887666666888888


Q ss_pred             CCeEeccccccccc-CCccccCcccccEEeeecCCCCCc
Q 010856           81 LQGLGLEDNKLEGS-IPDDICHLAELYRLDLDGNKLSGS  118 (499)
Q Consensus        81 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~  118 (499)
                      |++|++++|.+++. .|..|.++++|++|++++|++++.
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            88888888888763 577788888888888888876644

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.3e-30  Score=250.55  Aligned_cols=226  Identities=19%  Similarity=0.265  Sum_probs=182.7

Q ss_pred             CCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         4 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      .++++.|+|++|.++.+ |. .+..++ +|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+.++++|++
T Consensus        80 ~~~l~~L~L~~n~l~~l-p~-~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQF-PD-QAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCSSC-CS-CGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCchhc-Ch-hhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            46788888888888844 44 466677 7888888888888 67777888888888888888888 56777888888888


Q ss_pred             EecccccccccCCccccC---------cccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcE
Q 010856           84 LGLEDNKLEGSIPDDICH---------LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILN  154 (499)
Q Consensus        84 L~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~  154 (499)
                      |++++|++.+..|..+..         +++|++|++++|+++ .+|..+..+++|+.|++++|+++.+|..+..+++|++
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence            888887777777766543         888888888888888 5667788888888888888888888878888888888


Q ss_pred             EEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 010856          155 LNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL  234 (499)
Q Consensus       155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l  234 (499)
                      |++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+.+|..+..+++|+.+++..+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888877765


Q ss_pred             C
Q 010856          235 S  235 (499)
Q Consensus       235 ~  235 (499)
                      .
T Consensus       314 ~  314 (328)
T 4fcg_A          314 A  314 (328)
T ss_dssp             C
T ss_pred             H
Confidence            5

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=5.4e-30  Score=260.67  Aligned_cols=259  Identities=28%  Similarity=0.410  Sum_probs=155.1

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCC---------
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIP---------   72 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------   72 (499)
                      .++++|++|++++|.+++..+   +..++ +|++|++++|.+++..+  +..+++|++|++++|.+++...         
T Consensus        87 ~~l~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           87 KNLTKLVDILMNNNQIADITP---LANLT-NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQ  160 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred             hccccCCEEECCCCccccChh---hcCCC-CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccE
Confidence            467777888888877775533   55666 77777777777775533  6777777777777776654211         


Q ss_pred             ----------ccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCC
Q 010856           73 ----------ITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV  142 (499)
Q Consensus        73 ----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  142 (499)
                                ..+.++++|++|++++|.++..  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|+++.+
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  236 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI  236 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence                      1255667777778887777643  346677777777777777775543  55566666666666666665


Q ss_pred             CccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCC
Q 010856          143 PLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI  222 (499)
Q Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  222 (499)
                      + .+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..++
T Consensus       237 ~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~  309 (466)
T 1o6v_A          237 G-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK  309 (466)
T ss_dssp             G-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             h-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence            3 35556666666666666655433  5555666666666666654432  5555555555555555554322  45555


Q ss_pred             CCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          223 SLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       223 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                      +|+.|++++|++++..+  +..+++|+.|++++|++++. +....++.++.+++.+|+
T Consensus       310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCc
Confidence            55555555555554433  44555555555555555543 233334444555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=9.1e-30  Score=258.99  Aligned_cols=255  Identities=30%  Similarity=0.399  Sum_probs=149.8

Q ss_pred             CCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCC
Q 010856            3 NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQ   82 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   82 (499)
                      .+++|++|+|++|.+++..+   +..++ +|++|++++|.+++..+  +.++++|++|++++|.+++..+  +..+++|+
T Consensus        66 ~l~~L~~L~Ls~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  137 (466)
T 1o6v_A           66 YLNNLTQINFSNNQLTDITP---LKNLT-KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN  137 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             hhcCCCEEECCCCccCCchh---hhccc-cCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCC
Confidence            46677777777777765532   55555 67777777777765544  6777777777777777765433  66777777


Q ss_pred             eEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcC
Q 010856           83 GLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        83 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      +|++++|.+.+. + .+..+++|++|+++ |.+.+.  ..+..+++|+.|++++|.++.++ .+..+++|++|++++|.+
T Consensus       138 ~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          138 RLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             EEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             EEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc
Confidence            777777776643 1 24444444444443 222222  12556666677777777666654 355666666666666666


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      ++..+  +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +
T Consensus       212 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~  283 (466)
T 1o6v_A          212 SDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L  283 (466)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred             ccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c
Confidence            65433  45566666666666666543  345556666666666666654432  5555666666666666654333  5


Q ss_pred             cCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCc
Q 010856          243 EKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNE  280 (499)
Q Consensus       243 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~  280 (499)
                      ..+++|+.|++++|++++..+ ...+++++.+++.+|.
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred             cCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc
Confidence            555666666666666554333 3344555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=3.2e-29  Score=265.04  Aligned_cols=114  Identities=24%  Similarity=0.249  Sum_probs=99.9

Q ss_pred             CCCcEEEcCCCcC-CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEe
Q 010856          150 KDILNLNFSSNFL-TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN  228 (499)
Q Consensus       150 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  228 (499)
                      ++|+.|++++|.+ ....|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence            3455555555542 234567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCccCcccccCC-CCCCEEEccCCcCcccCC
Q 010856          229 LSNNNLSGAIPASLEKL-SYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~  263 (499)
                      |++|+|++..|..+..+ ++|+.|++++|++.+...
T Consensus       549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999988 689999999999998654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=3.8e-31  Score=254.59  Aligned_cols=244  Identities=17%  Similarity=0.201  Sum_probs=143.6

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCc-ccCCcccc-------CCCCCCEEeccCCcCCccCCccc-
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNIS-GGIPEEIS-------NLTNSTIVNLGGNKLNGSIPITL-   75 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-   75 (499)
                      ++|++|++++|.+  ..|. .+.   ..|+.|++++|.++ ...|..+.       ++++|++|+|++|.+++..|..+ 
T Consensus        43 ~~L~~l~l~~n~l--~~p~-~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLG-QFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EECTTHHHHCCTT--CCCH-HHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCceeEeeccccc--ccHH-HHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            4566666666666  3333 221   23666666666663 23343333       56666666666666666555554 


Q ss_pred             -cCCCCCCeEecccccccccCCccccCc-----ccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC---CCccc
Q 010856           76 -SKLQKLQGLGLEDNKLEGSIPDDICHL-----AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS---VPLTF  146 (499)
Q Consensus        76 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~  146 (499)
                       ..+++|++|+|++|++++. |..+..+     ++|++|++++|++++..+..|..+++|++|++++|++..   ++..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             6666666666666666655 5555555     666666666666666666666666666666666666543   22222


Q ss_pred             --cCCCCCcEEEcCCCcCCCC---CcccccCCCCccEEEccCCcccccCc-ccccCCcCCceeeCcCCcCCCCCCccccC
Q 010856          147 --WNLKDILNLNFSSNFLTSP---LPLEIGNLKVLIGIDFSMNNFSGVIP-TEIGGLKNLEYLFLGYNRLQGSIPDSFGD  220 (499)
Q Consensus       147 --~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  220 (499)
                        ..+++|++|++++|.+++.   ....+..+++|+.|++++|++++..| ..+..+++|++|++++|+++ .+|..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence              5566666666666666531   11233455666666666666665443 33445566666666666666 3444443 


Q ss_pred             CCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcc
Q 010856          221 LISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       221 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  260 (499)
                       ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             5666666666666654 33 6666666666666666653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=1.4e-28  Score=248.71  Aligned_cols=251  Identities=22%  Similarity=0.213  Sum_probs=210.1

Q ss_pred             CCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCC
Q 010856            3 NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQ   82 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   82 (499)
                      ++++|++|++++|.+++. |  .+..++ +|++|++++|+++++ |  +..+++|++|++++|.+++. +  +.++++|+
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~--~l~~l~-~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T--GIEKLT-GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T--TGGGCT-TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             HcCCCCEEEccCCCcccC-h--hhcccC-CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            578999999999999976 4  467787 899999999999975 3  88999999999999999975 3  88999999


Q ss_pred             eEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccC-CCCCCccccCCCCCcEEEcCCCc
Q 010856           83 GLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNK-LTSVPLTFWNLKDILNLNFSSNF  161 (499)
Q Consensus        83 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~  161 (499)
                      +|++++|++++. +  +..+++|++|++++|++++.   .+..+++|+.|++++|+ +..+  .+..+++|++|++++|.
T Consensus       110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            999999999864 3  88999999999999999975   37889999999999994 5446  47789999999999999


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCccc
Q 010856          162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPAS  241 (499)
Q Consensus       162 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  241 (499)
                      ++++ +  +..+++|+.|++++|++++.   .+..+++|++|++++|+++++ |  +..+++|+.|++++|++++..+..
T Consensus       182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~  252 (457)
T 3bz5_A          182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVST  252 (457)
T ss_dssp             CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred             ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHH
Confidence            9974 3  78899999999999999876   488899999999999999974 4  888999999999999999876555


Q ss_pred             ccCCC-------CCCEEEccCCcCcccCCCCCCCCCccccccCCCcC
Q 010856          242 LEKLS-------YLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       242 ~~~l~-------~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~  281 (499)
                      +..+.       +|+.|++++|++.+.+|. ..++.++.+++++|+.
T Consensus       253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             CTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCTT
T ss_pred             CCCCCEEeccCCCCCEEECCCCccCCcccc-cccccCCEEECCCCcc
Confidence            54443       455666666666666653 3567888888888864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=2.4e-28  Score=246.93  Aligned_cols=237  Identities=21%  Similarity=0.191  Sum_probs=188.4

Q ss_pred             CCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCC
Q 010856            2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKL   81 (499)
Q Consensus         2 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   81 (499)
                      +.+++|++|+|++|.++++    .+..++ +|++|++++|.+++. +  +.++++|++|++++|++++. +  +..+++|
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~----~~~~l~-~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L  129 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTL----DLSQNT-NLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLL  129 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCC----CCTTCT-TCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTC
T ss_pred             cccCCCCEEEccCCcCCeE----ccccCC-CCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcC
Confidence            5688999999999999986    266777 899999999999975 3  88999999999999999864 3  8899999


Q ss_pred             CeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCc
Q 010856           82 QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNF  161 (499)
Q Consensus        82 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  161 (499)
                      ++|++++|++++.   .+..+++|++|++++|+..+..  .+..+++|+.|++++|+++.+|  +..+++|+.|++++|.
T Consensus       130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc
Confidence            9999999999875   3788899999999999655444  4778899999999999999887  7788999999999999


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCC-------CCCEEeCCCCcC
Q 010856          162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI-------SLKFLNLSNNNL  234 (499)
Q Consensus       162 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-------~L~~L~l~~N~l  234 (499)
                      +++.   .+..+++|+.|++++|++++. |  +..+++|+.|++++|++++..+..+..+.       +|+.|++++|.+
T Consensus       203 l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~  276 (457)
T 3bz5_A          203 ITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ  276 (457)
T ss_dssp             CSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred             CCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence            9875   478889999999999999874 4  78889999999999999876544444332       334444444444


Q ss_pred             CccCcccccCCCCCCEEEccCCcCcccCCC
Q 010856          235 SGAIPASLEKLSYLENLNLSFNKLEGEIPR  264 (499)
Q Consensus       235 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  264 (499)
                      .+..|  +..+++|+.|++++|+..+.+|.
T Consensus       277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             CCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             CCccc--ccccccCCEEECCCCcccceecc
Confidence            43333  35667777788887777665553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=3e-30  Score=248.93  Aligned_cols=258  Identities=18%  Similarity=0.170  Sum_probs=203.1

Q ss_pred             CCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEec
Q 010856            7 LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGL   86 (499)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   86 (499)
                      ++.++++.+.+...... .+..++ +|++|++++|.+++..|..|..+++|++|+|++|.+++..+  +..+++|++|++
T Consensus        12 l~i~~ls~~~l~~~~~~-~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLKQALAS-LRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHHHHHHH-HHTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             eeEeeccccchhhhHHH-HhccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            44556666666543332 344445 89999999999998888889999999999999999986554  889999999999


Q ss_pred             ccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCC-ccccCCCCCcEEEcCCCcCCCC
Q 010856           87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSP  165 (499)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~  165 (499)
                      ++|.+++..     ..++|++|++++|++++..+..   +++|+.|++++|+++.++ ..+..+++|++|++++|.+++.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            999987442     3489999999999998765543   578999999999999864 4777889999999999999887


Q ss_pred             Ccccc-cCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccC
Q 010856          166 LPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEK  244 (499)
Q Consensus       166 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  244 (499)
                      .+..+ ..+++|++|++++|.+++..  ....+++|++|++++|++++..+ .+..+++|+.|++++|+++. +|..+..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~  235 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF  235 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhc
Confidence            66666 47899999999999998662  33458999999999999996544 58889999999999999994 5677888


Q ss_pred             CCCCCEEEccCCcCc-ccCCCC-CCCCCccccccCCCc
Q 010856          245 LSYLENLNLSFNKLE-GEIPRG-GSFGNFSAESFEGNE  280 (499)
Q Consensus       245 l~~L~~L~l~~N~l~-~~~~~~-~~~~~l~~~~l~~N~  280 (499)
                      +++|+.|++++|+++ +.+|.. ..++.++.+++.+++
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            999999999999998 333322 235556666666443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.7e-29  Score=243.55  Aligned_cols=242  Identities=22%  Similarity=0.224  Sum_probs=210.6

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +++.++++.+.+.......+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            46677788888876666777788899999999999998888899999999999999999986654  8999999999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP  191 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (499)
                      +|++++..     ..++|+.|++++|+++.++..  .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            99998543     348999999999999987643  46899999999999999888899999999999999999998877


Q ss_pred             ccc-cCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCC
Q 010856          192 TEI-GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGN  270 (499)
Q Consensus       192 ~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  270 (499)
                      ..+ ..+++|++|++++|.+++.  .....+++|+.|++++|++++..+ .+..+++|+.|++++|++++..+....++.
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~  238 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQN  238 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred             HHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCC
Confidence            776 4789999999999999966  233458999999999999996555 488999999999999999976555567789


Q ss_pred             ccccccCCCcCCCCC
Q 010856          271 FSAESFEGNELLCGS  285 (499)
Q Consensus       271 l~~~~l~~N~~~c~~  285 (499)
                      ++.+++.+|++.|++
T Consensus       239 L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          239 LEHFDLRGNGFHCGT  253 (317)
T ss_dssp             CCEEECTTCCCBHHH
T ss_pred             CCEEEccCCCccCcC
Confidence            999999999998864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=5.9e-28  Score=228.17  Aligned_cols=208  Identities=26%  Similarity=0.303  Sum_probs=126.7

Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecc
Q 010856           56 NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLG  135 (499)
Q Consensus        56 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  135 (499)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            44444554444444444444444455555555554444444444455555555555555554444455555555555555


Q ss_pred             ccCCCCCCc-cccCCCCCcEEEcCCCcCCCC-CcccccCCCCccEEEccCCcccccCcccccCCcCCc----eeeCcCCc
Q 010856          136 SNKLTSVPL-TFWNLKDILNLNFSSNFLTSP-LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE----YLFLGYNR  209 (499)
Q Consensus       136 ~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n~  209 (499)
                      +|+++.++. .+..+++|++|++++|.+++. .|..+..+++|+.|++++|++++..+..+..+++|+    +|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            555555433 355555566666666655543 355666666666777777766666666666666666    78888888


Q ss_pred             CCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCC
Q 010856          210 LQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPR  264 (499)
Q Consensus       210 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  264 (499)
                      +++..+..+.. .+|+.|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus       189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            87665555544 4788888888888877777778888888888888888876654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=3.3e-29  Score=255.38  Aligned_cols=241  Identities=20%  Similarity=0.196  Sum_probs=201.7

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  |..+++|++|+|++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            79999999999999888999999999999999999987655  899999999999999998543     33899999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCC-CccccCCCCCcEEEcCCCcCCCCCccccc-CCCCccEEEccCCccccc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLEIG-NLKVLIGIDFSMNNFSGV  189 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~  189 (499)
                      +|.+++..+.   .+++|+.|++++|.++.+ |..+..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            9999977654   357899999999999985 55788899999999999999987777776 789999999999999876


Q ss_pred             CcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcc-cCCC-CCC
Q 010856          190 IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEG-EIPR-GGS  267 (499)
Q Consensus       190 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~-~~~  267 (499)
                      .  .+..+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+ .+|. ...
T Consensus       185 ~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 K--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             E--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             c--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            3  34468999999999999997655 48899999999999999995 56678899999999999999983 3322 233


Q ss_pred             CCCccccccC-------CCcCCCCCC
Q 010856          268 FGNFSAESFE-------GNELLCGSP  286 (499)
Q Consensus       268 ~~~l~~~~l~-------~N~~~c~~~  286 (499)
                      ++.+..+.+.       +|++.|.++
T Consensus       261 l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          261 NQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             CHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCCCcEEeccccccccCCCcccccCC
Confidence            4555555554       778777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=7.8e-28  Score=227.37  Aligned_cols=223  Identities=19%  Similarity=0.177  Sum_probs=198.9

Q ss_pred             EEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEeccc
Q 010856            9 LIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLED   88 (499)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   88 (499)
                      ..+..+..++.++..     ++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        11 ~~~c~~~~l~~ip~~-----l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFYKIPDN-----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCSSCCSS-----SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCccccCCC-----CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence            567777777754332     345899999999999988888999999999999999999988888999999999999999


Q ss_pred             ccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC--CCccccCCCCCcEEEcCCCcCCCCC
Q 010856           89 NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPL  166 (499)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~  166 (499)
                      |.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|+++.  +|..+..+++|++|++++|++++..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            99998888899999999999999999998888789999999999999999998  6889999999999999999999887


Q ss_pred             cccccCCCCcc----EEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCcc
Q 010856          167 PLEIGNLKVLI----GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGA  237 (499)
Q Consensus       167 ~~~~~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  237 (499)
                      +..+..+++|+    .|++++|.+++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|+++..
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            77887777776    8999999999777666654 4899999999999988888889999999999999999843

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=3.5e-29  Score=255.23  Aligned_cols=222  Identities=24%  Similarity=0.238  Sum_probs=191.6

Q ss_pred             CCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCee
Q 010856           53 NLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIV  132 (499)
Q Consensus        53 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  132 (499)
                      .+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..+     .++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34589999999999998888899999999999999999986654  8899999999999999985432     3899999


Q ss_pred             eccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCccccc-CCcCCceeeCcCCcCC
Q 010856          133 SLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG-GLKNLEYLFLGYNRLQ  211 (499)
Q Consensus       133 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~  211 (499)
                      ++++|.++.++..  .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus       105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            9999999987643  468899999999999998888899999999999999999988888776 7899999999999998


Q ss_pred             CCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCCC
Q 010856          212 GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~~  286 (499)
                      +..  .+..+++|+.|+|++|.+++.++. +..+++|+.|++++|.+++.++....++.+..+++.+|++.|++.
T Consensus       183 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          183 DVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             EEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             ccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence            763  344689999999999999976554 889999999999999999866665667889999999999998764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.1e-29  Score=244.41  Aligned_cols=247  Identities=21%  Similarity=0.226  Sum_probs=207.1

Q ss_pred             cccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCc-cCCcccc-------CCCCCCeEecccccccccCCc
Q 010856           26 VGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNG-SIPITLS-------KLQKLQGLGLEDNKLEGSIPD   97 (499)
Q Consensus        26 ~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~   97 (499)
                      +.... +|++|++++|.+  .+|..+...  |+.|+|++|.++. ..|..+.       ++++|++|+|++|++++..|.
T Consensus        39 ~~~~~-~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGR-SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEE-ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCC-CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34445 799999999999  567666544  9999999999953 4455444       789999999999999988888


Q ss_pred             cc--cCcccccEEeeecCCCCCcCCccccCC-----ccCCeeeccccCCCCCC-ccccCCCCCcEEEcCCCcCCCC--Cc
Q 010856           98 DI--CHLAELYRLDLDGNKLSGSLPACFSNL-----TSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSP--LP  167 (499)
Q Consensus        98 ~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~  167 (499)
                      .+  ..+++|++|++++|++++. |..+..+     ++|++|++++|+++.++ ..+..+++|++|++++|++.+.  .+
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            76  8999999999999999987 7777777     89999999999999976 7899999999999999998753  22


Q ss_pred             ccc--cCCCCccEEEccCCccccc---CcccccCCcCCceeeCcCCcCCCCCC-ccccCCCCCCEEeCCCCcCCccCccc
Q 010856          168 LEI--GNLKVLIGIDFSMNNFSGV---IPTEIGGLKNLEYLFLGYNRLQGSIP-DSFGDLISLKFLNLSNNNLSGAIPAS  241 (499)
Q Consensus       168 ~~~--~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~  241 (499)
                      ..+  ..+++|++|++++|++++.   ....+..+++|++|++++|++++..| ..+..+++|+.|++++|+++ .+|..
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~  271 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG  271 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence            333  8899999999999999842   22445678999999999999998764 56777899999999999999 55665


Q ss_pred             ccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCC
Q 010856          242 LEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL  282 (499)
Q Consensus       242 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~  282 (499)
                      +.  ++|+.|++++|++++. |....++.++.+++.+|++.
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             cc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            55  8999999999999977 66777889999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=4.3e-27  Score=223.45  Aligned_cols=203  Identities=25%  Similarity=0.199  Sum_probs=134.1

Q ss_pred             ccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCC
Q 010856           51 ISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLR  130 (499)
Q Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  130 (499)
                      +.++++++++++++|.++.+ |..+.  ++++.|+|++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            56778888888888888744 33332  5788888888888777777788888888888888888754332  5677777


Q ss_pred             eeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcC
Q 010856          131 IVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL  210 (499)
Q Consensus       131 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  210 (499)
                      .|++++|+++.+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            77777777777776666777777777777777666556666666666666666666655555555666666666666666


Q ss_pred             CCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          211 QGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      ++..+..|..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            6555555555666666666666665 33334444445555555544444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=2.9e-26  Score=215.76  Aligned_cols=183  Identities=27%  Similarity=0.326  Sum_probs=101.3

Q ss_pred             CCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcC
Q 010856           80 KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFS  158 (499)
Q Consensus        80 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~  158 (499)
                      +|++|++++|+++...+..|..+++|++|++++|+++...+..|..+++|++|++++|+++.++. .+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            34444444444443333344444444444444444444333444444445555555554444332 23444555555555


Q ss_pred             CCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccC
Q 010856          159 SNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAI  238 (499)
Q Consensus       159 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  238 (499)
                      +|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            55555544555555666666666666666555555666666666666666666655556666667777777777666655


Q ss_pred             cccccCCCCCCEEEccCCcCcccC
Q 010856          239 PASLEKLSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       239 ~~~~~~l~~L~~L~l~~N~l~~~~  262 (499)
                      +..|..+++|+.|++++|++.+..
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             HHHhccccCCCEEEecCCCeeCCC
Confidence            556666666666666666665443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=2.4e-26  Score=216.32  Aligned_cols=202  Identities=26%  Similarity=0.288  Sum_probs=140.2

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +.+.+++++++++. +|..+.  ++|++|+|++|+++...+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            45666666666663 333332  456666666666665555566666666666666666665555556666667777777


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccC
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI  190 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (499)
                      +|++++..+..|..+++|++|++++|+++.++. .+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            777666666666667777777777777766543 3566777777777777777666666777778888888888877776


Q ss_pred             cccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCc
Q 010856          191 PTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG  236 (499)
Q Consensus       191 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  236 (499)
                      +..|..+++|++|++++|++++..+..|..+++|+.|++++|++..
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            6677788888888888888887766677888888888888888763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=1.6e-26  Score=219.41  Aligned_cols=206  Identities=27%  Similarity=0.267  Sum_probs=123.6

Q ss_pred             ccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcE
Q 010856           75 LSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILN  154 (499)
Q Consensus        75 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~  154 (499)
                      +.++++++++++++|.++. +|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|+++.++.. ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            4455566666666666653 333332  4566666666666655555666666666666666666665433 45666666


Q ss_pred             EEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 010856          155 LNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL  234 (499)
Q Consensus       155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l  234 (499)
                      |++++|.++. +|..+..+++|+.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus        82 L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            6666666653 444555666666666666666655555666666666666666666655555566666666666666666


Q ss_pred             CccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCC
Q 010856          235 SGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       235 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~  285 (499)
                      ++..+..|..+++|+.|++++|+++...+.......++.+++.+|||.|+|
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence            655555556666666666666666644433344445566666666666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1.1e-25  Score=227.23  Aligned_cols=248  Identities=29%  Similarity=0.374  Sum_probs=156.6

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|++++|.+++ .|  .+..++ +|++|++++|++++ +|..+   ++|++|++++|++++ .| .+.++++|++|
T Consensus       131 ~~L~~L~L~~n~l~~-lp--~~~~l~-~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP--ELQNSS-FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC--CCTTCT-TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred             CCCCEEECcCCCCCC-Cc--ccCCCC-CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence            578888888888876 34  366676 78888888888875 34332   477888888888775 34 47777888888


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS  164 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~  164 (499)
                      ++++|++++ +|..   .++|++|++++|.++ .+| .+..+++|+.|++++|+++.+|..   +++|+.|++++|.+++
T Consensus       201 ~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          201 YADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             ECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred             ECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence            888877774 3322   246777777777777 344 366777777777777777766642   2566666666666665


Q ss_pred             CCcccccCCCCccEEEccCCccccc--Cccc-------------ccCC-cCCceeeCcCCcCCCCCCccccCCCCCCEEe
Q 010856          165 PLPLEIGNLKVLIGIDFSMNNFSGV--IPTE-------------IGGL-KNLEYLFLGYNRLQGSIPDSFGDLISLKFLN  228 (499)
Q Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~-------------l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  228 (499)
                      + |..   .++|+.|++++|++++.  .|..             +..+ ++|++|++++|++++ +|..   +++|+.|+
T Consensus       272 l-~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~  343 (454)
T 1jl5_A          272 L-PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLI  343 (454)
T ss_dssp             C-CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             c-Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence            2 221   24555555555555441  1111             1123 589999999999986 4443   58899999


Q ss_pred             CCCCcCCccCcccccCCCCCCEEEccCCcCcc--cCCCCC-CC-------------CCccccccCCCcCCC
Q 010856          229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEG--EIPRGG-SF-------------GNFSAESFEGNELLC  283 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~-~~-------------~~l~~~~l~~N~~~c  283 (499)
                      +++|++++ +|.   .+++|+.|++++|++++  .+|... .+             ++++.+++++|+...
T Consensus       344 L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          344 ASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             CCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            99999995 444   47899999999999998  555442 22             678889999998654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=5e-25  Score=222.41  Aligned_cols=182  Identities=23%  Similarity=0.299  Sum_probs=84.0

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|++++|.++++ |. ..   + +|++|++++|+++++. . +  .++|++|++++|++++ .| .|.++++|++|
T Consensus        91 ~~L~~L~l~~n~l~~l-p~-~~---~-~L~~L~l~~n~l~~l~-~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L  158 (454)
T 1jl5_A           91 PHLESLVASCNSLTEL-PE-LP---Q-SLKSLLVDNNNLKALS-D-L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII  158 (454)
T ss_dssp             TTCSEEECCSSCCSSC-CC-CC---T-TCCEEECCSSCCSCCC-S-C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred             CCCCEEEccCCcCCcc-cc-cc---C-CCcEEECCCCccCccc-C-C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence            4566666666666653 22 11   2 4555555555544321 1 0  1345555555555553 23 35555555555


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-------------------c
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-------------------T  145 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~  145 (499)
                      ++++|++++ +|..   ..+|++|++++|++++ .| .+..+++|+.|++++|+++.+|.                   .
T Consensus       159 ~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~  232 (454)
T 1jl5_A          159 DVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE  232 (454)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC
T ss_pred             ECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc
Confidence            555555543 2221   1244555555555543 22 34444444444444444444432                   2


Q ss_pred             ccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCC
Q 010856          146 FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG  212 (499)
Q Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  212 (499)
                      +..+++|++|++++|++++. |.   .+++|+.|++++|++++. |..   .++|++|++++|++++
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSE
T ss_pred             cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCc
Confidence            44455555555555555432 11   124455555555555432 221   2455555555555553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=4.8e-25  Score=229.35  Aligned_cols=240  Identities=23%  Similarity=0.209  Sum_probs=120.5

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      +++.|++++|.++.+ |. .+.   ++|++|++++|.++.+ |.   .+++|++|+|++|+++.+ |.   .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~~l-p~-~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLTTL-PD-CLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCSCC-CS-CCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEE
T ss_pred             CCcEEEecCCCcCcc-Ch-hhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEE
Confidence            355566666666533 22 111   2566666666655532 22   345555566665555532 22   445555555


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccc-----------------cC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTF-----------------WN  148 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------~~  148 (499)
                      +++|.+++. |.   .+++|+.|++++|+++.. |..   +++|++|++++|+++.+|..+                 ..
T Consensus       108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~  179 (622)
T 3g06_A          108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPML  179 (622)
T ss_dssp             ECSCCCCCC-CC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC
T ss_pred             CcCCcCCCC-CC---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCccc
Confidence            555555532 21   334444555555544432 211   244444444444444433211                 22


Q ss_pred             CCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEe
Q 010856          149 LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN  228 (499)
Q Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  228 (499)
                      +++|+.|++++|.++++. .   .+++|+.|++++|.++.. |.   .+++|+.|++++|.++++ |   ..+++|+.|+
T Consensus       180 ~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~  247 (622)
T 3g06_A          180 PSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSL-P---VLPSELKELM  247 (622)
T ss_dssp             CTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEE
Confidence            355566666666655422 1   124455555555555432 21   235666666666666642 3   3446667777


Q ss_pred             CCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCC
Q 010856          229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL  282 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~  282 (499)
                      +++|+|+... .   .+++|+.|++++|+|+...+....++++..+++.+|++.
T Consensus       248 Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          248 VSGNRLTSLP-M---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCSSCCSCCC-C---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCCCCCCcCC-c---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence            7777666432 2   456667777777777633323344566666667776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.94  E-value=4.8e-26  Score=210.26  Aligned_cols=196  Identities=17%  Similarity=0.217  Sum_probs=126.9

Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCCeEeccccc-ccccCCccccCcccccEEeeec-CCCCCcCCccccCCccCCeee
Q 010856           56 NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNK-LEGSIPDDICHLAELYRLDLDG-NKLSGSLPACFSNLTSLRIVS  133 (499)
Q Consensus        56 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  133 (499)
                      +|++|++++|+++++.+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |+++...+..|.++++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666666555566666666666666665 6655555666666666666666 666665556666666677777


Q ss_pred             ccccCCCCCCccccCCCCCc---EEEcCCC-cCCCCCcccccCCCCcc-EEEccCCcccccCcccccCCcCCceeeCcCC
Q 010856          134 LGSNKLTSVPLTFWNLKDIL---NLNFSSN-FLTSPLPLEIGNLKVLI-GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN  208 (499)
Q Consensus       134 L~~n~l~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  208 (499)
                      +++|+++.+|. +..+++|+   +|++++| .++++.+..|..+++|+ .|++++|+++.+.+..+.. ++|++|++++|
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence            77776666664 55566665   6677666 66665555666677777 7777777766444444444 66777777777


Q ss_pred             c-CCCCCCccccCC-CCCCEEeCCCCcCCccCcccccCCCCCCEEEccCC
Q 010856          209 R-LQGSIPDSFGDL-ISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN  256 (499)
Q Consensus       209 ~-l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  256 (499)
                      + ++++.+..|..+ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            4 666656666666 7777777777777644333   4556666766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=1.7e-26  Score=217.52  Aligned_cols=221  Identities=23%  Similarity=0.257  Sum_probs=178.4

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      ++..+++..+.+.+.  ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            456667777776644  2356678888888888887732  3477788888888888888753  467888888888888


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCcc-ccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccC
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI  190 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (499)
                      +|.+++..+..|..+++|++|++++|+++.++.. +..+++|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            8888877777788888888888888888886554 677888888888888888877777888889999999999988877


Q ss_pred             cccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC
Q 010856          191 PTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG  265 (499)
Q Consensus       191 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  265 (499)
                      +..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+       .+++|+.++++.|.++|.+|..
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            7778888999999999999988888788889999999999998773       3567888899999999888765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=2.2e-25  Score=209.87  Aligned_cols=225  Identities=25%  Similarity=0.303  Sum_probs=192.2

Q ss_pred             CEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecc
Q 010856            8 TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE   87 (499)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   87 (499)
                      ..+++..+.+.+..   ....++ +|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        22 ~~l~l~~~~~~~~~---~~~~l~-~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           22 IKANLKKKSVTDAV---TQNELN-SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHTCSCTTSEE---CHHHHT-TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHhcCccccccc---cccccc-ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            34455666666543   344556 899999999998843  3588899999999999999853  478899999999999


Q ss_pred             cccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc-ccCCCCCcEEEcCCCcCCCCC
Q 010856           88 DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTSPL  166 (499)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  166 (499)
                      +|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+++.++.. +..+++|++|++++|.+++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            9999988888889999999999999999988888899999999999999999987654 678999999999999999888


Q ss_pred             cccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCC
Q 010856          167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS  246 (499)
Q Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~  246 (499)
                      +..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+       .+++|+.|+++.|.+++.+|..++.++
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            8888999999999999999999888889999999999999998874       356799999999999999998887665


Q ss_pred             C
Q 010856          247 Y  247 (499)
Q Consensus       247 ~  247 (499)
                      .
T Consensus       247 ~  247 (272)
T 3rfs_A          247 P  247 (272)
T ss_dssp             G
T ss_pred             C
Confidence            3

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=1e-28  Score=251.04  Aligned_cols=276  Identities=17%  Similarity=0.140  Sum_probs=169.8

Q ss_pred             CCCCCCEEECcCCCCCccC----ChhccccccccccEEEcccCCCcccCCccc-cCCC----CCCEEeccCCcCCc----
Q 010856            3 NCKSLTLIYLSNNPLDGIL----PKTSVGNLSHSLEDFRMYNCNISGGIPEEI-SNLT----NSTIVNLGGNKLNG----   69 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~-~~l~----~L~~L~L~~n~l~~----   69 (499)
                      .+++|++|+|++|.+++..    +. .+..++ +|++|++++|.+++..+..+ ..++    +|++|+|++|.++.    
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISS-ALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHH-HHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHH-HHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            4577888888888776432    22 344455 78888888887765444333 2344    58888888887774    


Q ss_pred             cCCccccCCCCCCeEecccccccccCCcccc-----CcccccEEeeecCCCCCcC----CccccCCccCCeeeccccCCC
Q 010856           70 SIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-----HLAELYRLDLDGNKLSGSL----PACFSNLTSLRIVSLGSNKLT  140 (499)
Q Consensus        70 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~  140 (499)
                      ..+..+..+++|++|++++|.++...+..+.     ..++|++|++++|++++..    +..+..+++|+.|++++|.++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            3366677777888888888877644333222     2456777888777777533    344555677777777777766


Q ss_pred             CC-Ccccc-----CCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCcccccC-----cccccCCcCCceeeC
Q 010856          141 SV-PLTFW-----NLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGVI-----PTEIGGLKNLEYLFL  205 (499)
Q Consensus       141 ~~-~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L  205 (499)
                      .. +..+.     ..++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..     +..+..+++|++|++
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            52 11111     245777777777777653    2445566677777777777766432     222234677777777


Q ss_pred             cCCcCCCC----CCccccCCCCCCEEeCCCCcCCccCcccccC-----CCCCCEEEccCCcCcccC----CCC-CCCCCc
Q 010856          206 GYNRLQGS----IPDSFGDLISLKFLNLSNNNLSGAIPASLEK-----LSYLENLNLSFNKLEGEI----PRG-GSFGNF  271 (499)
Q Consensus       206 ~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~~~----~~~-~~~~~l  271 (499)
                      ++|.+++.    .+..+..+++|+.|++++|.+++..+..+..     .++|+.|++++|.+++..    +.. ...+++
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            77777643    3455566777777777777776443333322     257777777777766431    111 123566


Q ss_pred             cccccCCCc
Q 010856          272 SAESFEGNE  280 (499)
Q Consensus       272 ~~~~l~~N~  280 (499)
                      +.+++++|.
T Consensus       344 ~~L~Ls~n~  352 (461)
T 1z7x_W          344 LELQISNNR  352 (461)
T ss_dssp             CEEECCSSB
T ss_pred             cEEEccCCc
Confidence            667776664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.9e-24  Score=224.89  Aligned_cols=226  Identities=22%  Similarity=0.178  Sum_probs=162.6

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      ++|++|+|++|.++.+.+     .++ +|++|+|++|+++++ |.   .+++|++|+|++|.+++..+    .+++|+.|
T Consensus        61 ~~L~~L~L~~N~l~~lp~-----~l~-~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA-----LPP-ELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHLPA----LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC-----CCT-TCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCCCCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCCCCCCC-----cCC-CCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCCCCCC----CCCCcCEE
Confidence            467777777777775433     233 777777777777743 33   55677777777777764322    34556666


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCC--ccc--------------cCCccCCeeeccccCCCCCCccccC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP--ACF--------------SNLTSLRIVSLGSNKLTSVPLTFWN  148 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--------------~~l~~L~~L~L~~n~l~~~~~~~~~  148 (499)
                      ++++|+++. +|..   +++|++|++++|++++...  ..+              ..+++|+.|++++|+++.+|..   
T Consensus       127 ~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---  199 (622)
T 3g06_A          127 WIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---  199 (622)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---
T ss_pred             ECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---
Confidence            666666553 2221   2555555555555553211  111              2237899999999999988754   


Q ss_pred             CCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEe
Q 010856          149 LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN  228 (499)
Q Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  228 (499)
                      +++|+.|++++|.++.+. .   .+++|+.|++++|.++++ |   ..+++|+.|++++|.++.+ |.   .+++|+.|+
T Consensus       200 ~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~  267 (622)
T 3g06_A          200 PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLS  267 (622)
T ss_dssp             CTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred             cchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEe
Confidence            488999999999998643 2   358899999999999964 3   5568999999999999954 44   678999999


Q ss_pred             CCCCcCCccCcccccCCCCCCEEEccCCcCcccCCC
Q 010856          229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPR  264 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  264 (499)
                      +++|+|+ .+|..+..+++|+.|++++|++++..|.
T Consensus       268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            9999999 5678899999999999999999976554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.93  E-value=2e-27  Score=233.58  Aligned_cols=251  Identities=19%  Similarity=0.178  Sum_probs=194.8

Q ss_pred             EEECcCCCCCccCChhccccccccccEEEcccCCCcccCC----ccccCCC-CCCEEeccCCcCCccCCccccCC-----
Q 010856            9 LIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIP----EEISNLT-NSTIVNLGGNKLNGSIPITLSKL-----   78 (499)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----   78 (499)
                      .+++++|++++..|. ++. .+.+|++|+|++|.+++..+    .+|..++ +|++|+|++|.++...+..+..+     
T Consensus         2 ~~~ls~n~~~~~~~~-~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVEE-FTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHHH-HHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHHHH-HHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            468899999987775 444 45479999999999998777    7888898 89999999999998777766664     


Q ss_pred             CCCCeEecccccccccCCcccc----Cc-ccccEEeeecCCCCCcCCccc----cC-CccCCeeeccccCCCC-----CC
Q 010856           79 QKLQGLGLEDNKLEGSIPDDIC----HL-AELYRLDLDGNKLSGSLPACF----SN-LTSLRIVSLGSNKLTS-----VP  143 (499)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~l~~-----~~  143 (499)
                      ++|++|+|++|.+++..+..+.    .+ ++|++|++++|++++..+..+    .. .++|++|++++|++++     ++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            8999999999999877666444    34 899999999999987665544    33 3699999999999984     34


Q ss_pred             ccccCCC-CCcEEEcCCCcCCCCCcccc----cCC-CCccEEEccCCcccccC----cccccC-CcCCceeeCcCCcCCC
Q 010856          144 LTFWNLK-DILNLNFSSNFLTSPLPLEI----GNL-KVLIGIDFSMNNFSGVI----PTEIGG-LKNLEYLFLGYNRLQG  212 (499)
Q Consensus       144 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~----~~~l~~-l~~L~~L~L~~n~l~~  212 (499)
                      ..+..++ +|++|++++|.+++..+..+    ..+ ++|+.|++++|.+++..    +..+.. .++|++|+|++|.+++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            4455565 89999999999987665443    344 58999999999998643    334444 4589999999999987


Q ss_pred             CCC----ccccCCCCCCEEeCCCCcCCccC-------cccccCCCCCCEEEccCCcCccc
Q 010856          213 SIP----DSFGDLISLKFLNLSNNNLSGAI-------PASLEKLSYLENLNLSFNKLEGE  261 (499)
Q Consensus       213 ~~~----~~l~~l~~L~~L~l~~N~l~~~~-------~~~~~~l~~L~~L~l~~N~l~~~  261 (499)
                      ..+    ..+..+++|+.|++++|.+.+..       +..+..+++|+.||+++|++...
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            654    33567789999999999855433       33567788899999999998754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=3.7e-25  Score=204.26  Aligned_cols=199  Identities=20%  Similarity=0.214  Sum_probs=176.0

Q ss_pred             ccccccEEEcccCCCcccCCccccCCCCCCEEeccCCc-CCccCCccccCCCCCCeEeccc-ccccccCCccccCccccc
Q 010856           29 LSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNK-LNGSIPITLSKLQKLQGLGLED-NKLEGSIPDDICHLAELY  106 (499)
Q Consensus        29 l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~  106 (499)
                      ++.+|++|++++|+++++.+.+|.++++|++|++++|+ ++.+.+..|.++++|++|++++ |+++...+..|.++++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            34589999999999998888899999999999999997 9888888899999999999998 999988888899999999


Q ss_pred             EEeeecCCCCCcCCccccCCccCC---eeecccc-CCCCCCc-cccCCCCCc-EEEcCCCcCCCCCcccccCCCCccEEE
Q 010856          107 RLDLDGNKLSGSLPACFSNLTSLR---IVSLGSN-KLTSVPL-TFWNLKDIL-NLNFSSNFLTSPLPLEIGNLKVLIGID  180 (499)
Q Consensus       107 ~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~  180 (499)
                      +|++++|++++ .|. |..+++|+   .|++++| +++.++. .+..+++|+ +|++++|.++.+.+..|.. ++|+.|+
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            99999999997 454 88888898   9999999 9999775 488899999 9999999999766666666 8999999


Q ss_pred             ccCCc-ccccCcccccCC-cCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCc
Q 010856          181 FSMNN-FSGVIPTEIGGL-KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNN  233 (499)
Q Consensus       181 l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~  233 (499)
                      +++|+ +++..+..|.++ ++|+.|++++|++++..+.   .+++|+.|+++++.
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            99995 998888889999 9999999999999965444   67789999998763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=5.2e-28  Score=245.87  Aligned_cols=275  Identities=18%  Similarity=0.153  Sum_probs=203.9

Q ss_pred             CCCEEECcCCCCCcc----CChhccccccccccEEEcccCCCcccCCcccc-----CCCCCCEEeccCCcCCccC----C
Q 010856            6 SLTLIYLSNNPLDGI----LPKTSVGNLSHSLEDFRMYNCNISGGIPEEIS-----NLTNSTIVNLGGNKLNGSI----P   72 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~----~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~----~   72 (499)
                      +|++|+|++|.+++.    .+. .+..++ +|++|++++|.+++..+..+.     ..++|++|++++|+++...    +
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHH-HHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence            799999999998853    244 677777 899999999998765444333     3568999999999988643    4


Q ss_pred             ccccCCCCCCeEecccccccccCCcccc-----CcccccEEeeecCCCCCc----CCccccCCccCCeeeccccCCCCC-
Q 010856           73 ITLSKLQKLQGLGLEDNKLEGSIPDDIC-----HLAELYRLDLDGNKLSGS----LPACFSNLTSLRIVSLGSNKLTSV-  142 (499)
Q Consensus        73 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-  142 (499)
                      ..+..+++|++|++++|.++...+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|+++.. 
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            5566778999999999998755444443     256899999999998864    356677788999999999988762 


Q ss_pred             -----CccccCCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCcccccCcccccC-----CcCCceeeCcCC
Q 010856          143 -----PLTFWNLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGG-----LKNLEYLFLGYN  208 (499)
Q Consensus       143 -----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~L~~n  208 (499)
                           +..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .++|++|++++|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence                 22233578999999999988763    4556667889999999999887654444432     368999999999


Q ss_pred             cCCCC----CCccccCCCCCCEEeCCCCcCCccCcccccC-----CCCCCEEEccCCcCcc----cCCCC-CCCCCcccc
Q 010856          209 RLQGS----IPDSFGDLISLKFLNLSNNNLSGAIPASLEK-----LSYLENLNLSFNKLEG----EIPRG-GSFGNFSAE  274 (499)
Q Consensus       209 ~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~----~~~~~-~~~~~l~~~  274 (499)
                      .+++.    .+..+..+++|+.|++++|++++..+..+..     .++|+.|++++|++++    .+|.. ...++++.+
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            88865    3455677789999999999887655544432     6789999999998884    33322 346778888


Q ss_pred             ccCCCcCC
Q 010856          275 SFEGNELL  282 (499)
Q Consensus       275 ~l~~N~~~  282 (499)
                      ++++|+..
T Consensus       404 ~l~~N~i~  411 (461)
T 1z7x_W          404 DLSNNCLG  411 (461)
T ss_dssp             ECCSSSCC
T ss_pred             ECCCCCCC
Confidence            88888753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.93  E-value=1e-25  Score=216.50  Aligned_cols=222  Identities=17%  Similarity=0.188  Sum_probs=122.7

Q ss_pred             ccEEEcccCCCcccCCc---cccCCCCCCEEeccCCcCCccCCccc--cCCCCCCeEecccccccccCC----ccccCcc
Q 010856           33 LEDFRMYNCNISGGIPE---EISNLTNSTIVNLGGNKLNGSIPITL--SKLQKLQGLGLEDNKLEGSIP----DDICHLA  103 (499)
Q Consensus        33 L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~  103 (499)
                      ++.|.+.++.++.....   .+..+++|++|++++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            55666666555421100   11223456666666666666666555  666666666666666664333    2334566


Q ss_pred             cccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC---CC--ccccCCCCCcEEEcCCCcCCCCCcc---cccCCCC
Q 010856          104 ELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS---VP--LTFWNLKDILNLNFSSNFLTSPLPL---EIGNLKV  175 (499)
Q Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~--~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~  175 (499)
                      +|++|++++|++++..+..|..+++|++|++++|++..   ++  ..+..+++|++|++++|+++.....   .+..+++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~  225 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ  225 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence            66666666666666666666666666666666666543   22  1224556666666666666532111   2345566


Q ss_pred             ccEEEccCCcccccCcccccCC---cCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEE
Q 010856          176 LIGIDFSMNNFSGVIPTEIGGL---KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLN  252 (499)
Q Consensus       176 L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  252 (499)
                      |++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|+
T Consensus       226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~  300 (310)
T 4glp_A          226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT  300 (310)
T ss_dssp             CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred             CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence            6666666666665555444444   46666666666666 3344332  5666666666666643 22 45556666666


Q ss_pred             ccCCcCc
Q 010856          253 LSFNKLE  259 (499)
Q Consensus       253 l~~N~l~  259 (499)
                      +++|+++
T Consensus       301 L~~N~l~  307 (310)
T 4glp_A          301 LDGNPFL  307 (310)
T ss_dssp             CSSTTTS
T ss_pred             CcCCCCC
Confidence            6666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=3e-25  Score=213.20  Aligned_cols=225  Identities=16%  Similarity=0.172  Sum_probs=185.6

Q ss_pred             CCCEEECcCCCCCccCChh--ccccccccccEEEcccCCCcccCCccc--cCCCCCCEEeccCCcCCccCC----ccccC
Q 010856            6 SLTLIYLSNNPLDGILPKT--SVGNLSHSLEDFRMYNCNISGGIPEEI--SNLTNSTIVNLGGNKLNGSIP----ITLSK   77 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~--~~~~l~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~   77 (499)
                      .++.|.+.++.++......  ....++ +|++|++++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4677888877775321110  112234 69999999999999999888  899999999999999997554    34567


Q ss_pred             CCCCCeEecccccccccCCccccCcccccEEeeecCCCCCc---C-CccccCCccCCeeeccccCCCCCCcc----ccCC
Q 010856           78 LQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS---L-PACFSNLTSLRIVSLGSNKLTSVPLT----FWNL  149 (499)
Q Consensus        78 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~l  149 (499)
                      +++|++|+|++|++.+..+..|..+++|++|+|++|++.+.   . +..+..+++|++|++++|+++.++..    +..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            99999999999999988889999999999999999998642   2 23347889999999999999876652    5678


Q ss_pred             CCCcEEEcCCCcCCCCCcccccCC---CCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCE
Q 010856          150 KDILNLNFSSNFLTSPLPLEIGNL---KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKF  226 (499)
Q Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  226 (499)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|+++. +|..+.  ++|++|+|++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            999999999999998877777766   699999999999994 566553  8999999999999965 33 788899999


Q ss_pred             EeCCCCcCCc
Q 010856          227 LNLSNNNLSG  236 (499)
Q Consensus       227 L~l~~N~l~~  236 (499)
                      |++++|++++
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999974

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=8.1e-25  Score=209.75  Aligned_cols=194  Identities=24%  Similarity=0.347  Sum_probs=107.2

Q ss_pred             cCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCe
Q 010856           52 SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRI  131 (499)
Q Consensus        52 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  131 (499)
                      ..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            3445555555555555432 2 34555555555555555553322  55555555555555555532  23555555555


Q ss_pred             eeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCC
Q 010856          132 VSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ  211 (499)
Q Consensus       132 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  211 (499)
                      |++++|+++.++. +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            5555555555543 5555566666666665554332  5555666666666666654332  556666666666666665


Q ss_pred             CCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcc
Q 010856          212 GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  260 (499)
                      +..+  +..+++|+.|++++|++++..  .+..+++|+.|++++|++++
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            4322  556666666666666666443  25666666666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=2.5e-24  Score=206.35  Aligned_cols=208  Identities=19%  Similarity=0.330  Sum_probs=178.0

Q ss_pred             ECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEeccccc
Q 010856           11 YLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNK   90 (499)
Q Consensus        11 ~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   90 (499)
                      .+..+.+++...   ...++ +|++|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|++++|+
T Consensus        25 ~l~~~~~~~~~~---~~~l~-~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           25 AAGKSNVTDTVT---QADLD-GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (308)
T ss_dssp             HTTCSSTTSEEC---HHHHH-TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HhCCCCcCceec---HHHcC-CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence            445555655433   33466 899999999999864 4 68899999999999999986555  8999999999999999


Q ss_pred             ccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccc
Q 010856           91 LEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEI  170 (499)
Q Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  170 (499)
                      +++.  ..+..+++|++|++++|++++..  .+..+++|+.|++++|+++.++. +..+++|++|++++|.+++..+  +
T Consensus        97 l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l  169 (308)
T 1h6u_A           97 LKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--L  169 (308)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--h
Confidence            9864  46899999999999999999653  38899999999999999999875 8899999999999999997544  8


Q ss_pred             cCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCcc
Q 010856          171 GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGA  237 (499)
Q Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  237 (499)
                      ..+++|+.|++++|++++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++.
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            899999999999999987644  889999999999999999664  489999999999999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=4.9e-26  Score=221.40  Aligned_cols=249  Identities=21%  Similarity=0.215  Sum_probs=149.7

Q ss_pred             CCEEECcCCCCCccCChhccccc--cccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCCe
Q 010856            7 LTLIYLSNNPLDGILPKTSVGNL--SHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGS-IPITLSKLQKLQG   83 (499)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~~l--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~   83 (499)
                      ++.+++++|.+..   . .+..+  + +++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++
T Consensus        49 ~~~l~l~~~~~~~---~-~~~~~~~~-~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLHP---D-VTGRLLSQ-GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCCH---H-HHHHHHHT-TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             heeeccccccCCH---H-HHHhhhhc-cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            5667777766652   2 33333  3 677777777777655544 44567777777777776644 5555666777777


Q ss_pred             EecccccccccCCccccCcccccEEeeecC-CCCCc-CCccccCCccCCeeecccc-CCCC--CCccccCCC-CCcEEEc
Q 010856           84 LGLEDNKLEGSIPDDICHLAELYRLDLDGN-KLSGS-LPACFSNLTSLRIVSLGSN-KLTS--VPLTFWNLK-DILNLNF  157 (499)
Q Consensus        84 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~-~L~~L~l  157 (499)
                      |++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .++.  ++..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            777777766656666666777777777777 45532 3444566677777777777 6664  455566666 7777777


Q ss_pred             CCC--cCC-CCCcccccCCCCccEEEccCCc-ccccCcccccCCcCCceeeCcCCc-CCCCCCccccCCCCCCEEeCCCC
Q 010856          158 SSN--FLT-SPLPLEIGNLKVLIGIDFSMNN-FSGVIPTEIGGLKNLEYLFLGYNR-LQGSIPDSFGDLISLKFLNLSNN  232 (499)
Q Consensus       158 ~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~N  232 (499)
                      ++|  .++ ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            776  343 2234445566677777777776 555555566666777777777664 22222224566667777777766


Q ss_pred             cCCccCcccccCCCCCCEEEccCCcCcccCCC
Q 010856          233 NLSGAIPASLEKLSYLENLNLSFNKLEGEIPR  264 (499)
Q Consensus       233 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  264 (499)
                       ++......+.  .++..|++++|++++..|.
T Consensus       283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          283 -VPDGTLQLLK--EALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             -SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred             -cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence             3322212221  2244455666666665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.2e-23  Score=195.68  Aligned_cols=177  Identities=25%  Similarity=0.285  Sum_probs=96.1

Q ss_pred             ccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeec
Q 010856           33 LEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG  112 (499)
Q Consensus        33 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  112 (499)
                      .++++++++.++. +|..+.  ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4445555555442 222222  3455555555555544444455555555555555555544444455555555555555


Q ss_pred             CCCCCcCCccccCCccCCeeeccccCCCCCCcc-ccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCc
Q 010856          113 NKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP  191 (499)
Q Consensus       113 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (499)
                      |++++..+..|..+++|++|++++|+++.++.. +..+++|++|++++|.++++.+..|..+++|+.|++++|++++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            555544445555555555555555555554433 3455556666666666655555556666666666666666665555


Q ss_pred             ccccCCcCCceeeCcCCcCCC
Q 010856          192 TEIGGLKNLEYLFLGYNRLQG  212 (499)
Q Consensus       192 ~~l~~l~~L~~L~L~~n~l~~  212 (499)
                      ..|..+++|+.|++++|++..
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCT
T ss_pred             HHHhCCCCCCEEEeeCCceeC
Confidence            566666666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1e-26  Score=230.74  Aligned_cols=237  Identities=23%  Similarity=0.253  Sum_probs=175.2

Q ss_pred             ccccccccccEEEcccCCCcccCC----ccccCCCCCCEEeccCCcCC---ccCCccc-------cCCCCCCeEeccccc
Q 010856           25 SVGNLSHSLEDFRMYNCNISGGIP----EEISNLTNSTIVNLGGNKLN---GSIPITL-------SKLQKLQGLGLEDNK   90 (499)
Q Consensus        25 ~~~~l~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~---~~~~~~~-------~~l~~L~~L~L~~n~   90 (499)
                      .+..++ +|++|+|++|.++...+    ..+..+++|++|+|++|.+.   +..|..+       ..+++|++|+|++|.
T Consensus        27 ~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           27 VLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            455566 79999999998886533    34678889999999886443   3344433       678889999999998


Q ss_pred             ccc----cCCccccCcccccEEeeecCCCCCcCCcccc----CC---------ccCCeeeccccCCCC--CC---ccccC
Q 010856           91 LEG----SIPDDICHLAELYRLDLDGNKLSGSLPACFS----NL---------TSLRIVSLGSNKLTS--VP---LTFWN  148 (499)
Q Consensus        91 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~~--~~---~~~~~  148 (499)
                      ++.    .++..+..+++|++|+|++|.++...+..+.    .+         ++|++|++++|+++.  ++   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            886    3566778888899999999988744333333    33         788899999988873  44   45667


Q ss_pred             CCCCcEEEcCCCcCCC-----CCcccccCCCCccEEEccCCccc----ccCcccccCCcCCceeeCcCCcCCCC----CC
Q 010856          149 LKDILNLNFSSNFLTS-----PLPLEIGNLKVLIGIDFSMNNFS----GVIPTEIGGLKNLEYLFLGYNRLQGS----IP  215 (499)
Q Consensus       149 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~  215 (499)
                      +++|++|++++|.++.     ..+..+..+++|+.|+|++|.++    ...|..+..+++|++|+|++|.+++.    ++
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            8888899998888873     23336778888888888888885    45667778888888888888888764    34


Q ss_pred             cccc--CCCCCCEEeCCCCcCCc----cCcccc-cCCCCCCEEEccCCcCcccC
Q 010856          216 DSFG--DLISLKFLNLSNNNLSG----AIPASL-EKLSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       216 ~~l~--~l~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~  262 (499)
                      ..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            5553  37888888888888886    356555 56788888888888887543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.7e-23  Score=194.50  Aligned_cols=180  Identities=24%  Similarity=0.302  Sum_probs=104.1

Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecc
Q 010856           56 NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLG  135 (499)
Q Consensus        56 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  135 (499)
                      ..++++++++.++. +|..+.  ++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            34556666666653 232222  355555555555555555555555555555555555555444445555555555555


Q ss_pred             ccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCC
Q 010856          136 SNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP  215 (499)
Q Consensus       136 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  215 (499)
                      +|+++                       +..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+
T Consensus        92 ~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           92 NNQLA-----------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             TSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCccc-----------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            55444                       4444445555555555555555555555555666666666666666665555


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCccc
Q 010856          216 DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGE  261 (499)
Q Consensus       216 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  261 (499)
                      ..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5666666667777777766666666666667777777777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=2.9e-26  Score=227.37  Aligned_cols=236  Identities=21%  Similarity=0.215  Sum_probs=191.6

Q ss_pred             CCCCCCEEECcCCCCCccCChh---ccccccccccEEEcccCCC---cccCCccc-------cCCCCCCEEeccCCcCCc
Q 010856            3 NCKSLTLIYLSNNPLDGILPKT---SVGNLSHSLEDFRMYNCNI---SGGIPEEI-------SNLTNSTIVNLGGNKLNG   69 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~~L~~L~l~~n~i---~~~~~~~~-------~~l~~L~~L~L~~n~l~~   69 (499)
                      .+++|++|+|++|.+++..+..   .+..++ +|++|+|++|.+   ++.+|..+       ..+++|++|+|++|.++.
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            5789999999999998764431   355677 899999999644   44555554       789999999999999987


Q ss_pred             ----cCCccccCCCCCCeEecccccccccCCccc----cCc---------ccccEEeeecCCCCC-cCC---ccccCCcc
Q 010856           70 ----SIPITLSKLQKLQGLGLEDNKLEGSIPDDI----CHL---------AELYRLDLDGNKLSG-SLP---ACFSNLTS  128 (499)
Q Consensus        70 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~l~~-~~~---~~~~~l~~  128 (499)
                          .++..+..+++|++|+|++|.++...+..+    ..+         ++|++|++++|+++. ..+   ..+..+++
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  188 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  188 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence                356678899999999999999975444433    334         899999999999973 333   35677899


Q ss_pred             CCeeeccccCCCC------CCccccCCCCCcEEEcCCCcCC----CCCcccccCCCCccEEEccCCccccc----Ccccc
Q 010856          129 LRIVSLGSNKLTS------VPLTFWNLKDILNLNFSSNFLT----SPLPLEIGNLKVLIGIDFSMNNFSGV----IPTEI  194 (499)
Q Consensus       129 L~~L~L~~n~l~~------~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l  194 (499)
                      |+.|++++|+++.      ++..+..+++|+.|+|++|.++    ..++..+..+++|+.|+|++|.+++.    ++..+
T Consensus       189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            9999999999983      3447889999999999999996    45677888999999999999999865    45556


Q ss_pred             c--CCcCCceeeCcCCcCCC----CCCccc-cCCCCCCEEeCCCCcCCccCc
Q 010856          195 G--GLKNLEYLFLGYNRLQG----SIPDSF-GDLISLKFLNLSNNNLSGAIP  239 (499)
Q Consensus       195 ~--~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~~  239 (499)
                      .  .+++|++|+|++|.+++    .++..+ ..+++|+.|++++|++++..+
T Consensus       269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            3  38999999999999997    366666 668999999999999997663

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=5.7e-23  Score=200.71  Aligned_cols=199  Identities=14%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             CEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCCe-Ee
Q 010856            8 TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGS-IPITLSKLQKLQG-LG   85 (499)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~-L~   85 (499)
                      ++++.++++++.+ |. .   ++.++++|+|++|+|+.+.+++|.++++|++|+|++|++.+. .+.+|.++++|++ +.
T Consensus        12 ~~v~C~~~~Lt~i-P~-~---l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVTEI-PS-D---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCCSC-CT-T---CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCCcc-Cc-C---cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            4566666666644 32 1   233666677777766665556666666777777766665443 3345666666554 44


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccc-cCCCCCCc-cccCC-CCCcEEEcCCCcC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGS-NKLTSVPL-TFWNL-KDILNLNFSSNFL  162 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~l-~~L~~L~l~~n~l  162 (499)
                      +++|+++.+.+..|..+++|++|++++|+++...+..+....++..|++.+ +++..++. .+..+ ..++.|++++|+|
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            455666656566666666666666666666655555555555555566543 34554433 23332 2345555555555


Q ss_pred             CCCCcccccCCCCccEEEccC-CcccccCcccccCCcCCceeeCcCCcCCC
Q 010856          163 TSPLPLEIGNLKVLIGIDFSM-NNFSGVIPTEIGGLKNLEYLFLGYNRLQG  212 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  212 (499)
                      +.+.+..| ...+|+.|++++ |.++.+.+..|.++++|++|++++|+|+.
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence            54333222 223444444442 34443333444445555555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=2.6e-25  Score=218.39  Aligned_cols=247  Identities=20%  Similarity=0.201  Sum_probs=196.8

Q ss_pred             EEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCC----ccccCCC-CCCeEecccccccccCCccccCc-----cc
Q 010856           35 DFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIP----ITLSKLQ-KLQGLGLEDNKLEGSIPDDICHL-----AE  104 (499)
Q Consensus        35 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~  104 (499)
                      .+++++|.+++.+|..+...++|++|+|++|.++...+    ..|..++ +|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46889999999888877777789999999999997776    6788888 99999999999998877777765     99


Q ss_pred             ccEEeeecCCCCCcCCccc----cCC-ccCCeeeccccCCCCCCc-----cccC-CCCCcEEEcCCCcCCCCCccc----
Q 010856          105 LYRLDLDGNKLSGSLPACF----SNL-TSLRIVSLGSNKLTSVPL-----TFWN-LKDILNLNFSSNFLTSPLPLE----  169 (499)
Q Consensus       105 L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~-----~~~~-l~~L~~L~l~~n~l~~~~~~~----  169 (499)
                      |++|+|++|++++..+..+    ..+ ++|+.|++++|+++..+.     .+.. .++|++|++++|.+++.....    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999997766644    444 899999999999988553     2334 369999999999998644433    


Q ss_pred             ccCCC-CccEEEccCCcccccCccccc----CC-cCCceeeCcCCcCCCCC----CccccC-CCCCCEEeCCCCcCCccC
Q 010856          170 IGNLK-VLIGIDFSMNNFSGVIPTEIG----GL-KNLEYLFLGYNRLQGSI----PDSFGD-LISLKFLNLSNNNLSGAI  238 (499)
Q Consensus       170 ~~~l~-~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~----~~~l~~-l~~L~~L~l~~N~l~~~~  238 (499)
                      +..++ +|++|++++|++++..+..+.    .+ ++|++|+|++|.+++..    +..+.. .++|+.|++++|++++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            34555 999999999999987765544    44 59999999999998643    344544 469999999999998765


Q ss_pred             c----ccccCCCCCCEEEccCCcCcccCC--------CCCCCCCccccccCCCcC
Q 010856          239 P----ASLEKLSYLENLNLSFNKLEGEIP--------RGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       239 ~----~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~l~~~~l~~N~~  281 (499)
                      +    ..+..+++|+.|++++|.+.+..+        .....+.+..+++++|+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            5    445778999999999999553322        223456678889999874

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.90  E-value=4.6e-25  Score=208.93  Aligned_cols=135  Identities=18%  Similarity=0.169  Sum_probs=107.2

Q ss_pred             hhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ++|.+.+.||+|+||+||+|++.      +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+  ..
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~--~~   90 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD--PL   90 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--SE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC--EE
Confidence            56888999999999999999853      47889999998765555678999999999999999999999998743  44


Q ss_pred             eeeecccC-CCccccccc-----------------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEE
Q 010856          435 LCLFHHSS-ASASASLVS-----------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       435 ~~l~~~~~-~~~~~~l~~-----------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~  490 (499)
                      ++++||+. |++.+.++.                 .+.....++.|||+||+|||+      |+||.|+|++.++.+|++
T Consensus        91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~  170 (299)
T 4asz_A           91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIG  170 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEEC
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEEC
Confidence            56777775 455444432                 223344567999999999876      899999999999999999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||+++.
T Consensus       171 DFGla~~  177 (299)
T 4asz_A          171 DFGMSRD  177 (299)
T ss_dssp             CCSCHHH
T ss_pred             Cccccee
Confidence            9999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.90  E-value=8.4e-25  Score=210.00  Aligned_cols=136  Identities=19%  Similarity=0.185  Sum_probs=104.8

Q ss_pred             hhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|.+.+.||+|+||+||+|+++      +++.||||+++.......++|.+|+++|++++|||||+++|+|...+  ..
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~--~~  118 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR--PL  118 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--SE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EE
Confidence            56788899999999999999853      47899999998765555788999999999999999999999997643  44


Q ss_pred             eeeecccCCC-ccccccc-------------------cccccccccccccccceeecc------CCCcccEEEeeCCCeE
Q 010856          435 LCLFHHSSAS-ASASLVS-------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVE  488 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~-------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~  488 (499)
                      ++++||+.++ +.+.++.                   .+.....++.|||+||+|||+      |+||.|||++.++.+|
T Consensus       119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~K  198 (329)
T 4aoj_A          119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVK  198 (329)
T ss_dssp             EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEE
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEE
Confidence            5677777554 4333322                   122234557899999999765      8999999999999999


Q ss_pred             EEEEEEeecc
Q 010856          489 VICFVFEILL  498 (499)
Q Consensus       489 ~~~f~~~~~~  498 (499)
                      ++|||+++.+
T Consensus       199 i~DFGla~~~  208 (329)
T 4aoj_A          199 IGDFGMSRDI  208 (329)
T ss_dssp             ECCCC-----
T ss_pred             Ecccccceec
Confidence            9999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=5.3e-23  Score=200.92  Aligned_cols=223  Identities=17%  Similarity=0.129  Sum_probs=183.9

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcc-cCCccccCCCCCCE-EeccCCcCCccCCccccCCCCCC
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISG-GIPEEISNLTNSTI-VNLGGNKLNGSIPITLSKLQKLQ   82 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~   82 (499)
                      +++++|+|++|+|+.+.+. .|.+++ +|++|+|++|++.+ +.+.+|.++++|++ +.+++|+++.+.|..|..+++|+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~-~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKG-AFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSEECTT-SSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCCcCHH-HHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            5799999999999977665 788898 99999999999865 44567999998876 66778999988899999999999


Q ss_pred             eEecccccccccCCccccCcccccEEeeec-CCCCCcCCccccCCc-cCCeeeccccCCCCCCccccCCCCCcEEEcCC-
Q 010856           83 GLGLEDNKLEGSIPDDICHLAELYRLDLDG-NKLSGSLPACFSNLT-SLRIVSLGSNKLTSVPLTFWNLKDILNLNFSS-  159 (499)
Q Consensus        83 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~-  159 (499)
                      +|++++|++....+..+....++..|++.+ +++....+..|..+. .++.|++++|+|+.++...+...+|++|++++ 
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence            999999999977777777888899999976 678877777787775 68999999999999998888888999999975 


Q ss_pred             CcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCc
Q 010856          160 NFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNN  233 (499)
Q Consensus       160 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~  233 (499)
                      |.++.+.+..|..+++|+.|++++|+|+.+.+..|.++++|+.+++  +.++ ..| .+..+++|+.++++++.
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCCc
Confidence            7788777778999999999999999999776665555544444433  2344 444 47788889999887653

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.89  E-value=1.7e-24  Score=201.71  Aligned_cols=137  Identities=15%  Similarity=0.187  Sum_probs=106.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|++.+.||+|+||+||+|+. .+|+.||+|++++..   ....+.+.+|++++++++|||||++++++...+  ..+
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~   89 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD--EII   89 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EEE
Confidence            47899999999999999999995 579999999997653   233567999999999999999999999987743  445


Q ss_pred             eeecccCCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++||++|++.+.+......    .+.++.|++.||+|||+      |+||+||+++.++.++++|||+++..
T Consensus        90 ivmEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~  162 (275)
T 3hyh_A           90 MVIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIM  162 (275)
T ss_dssp             EEEECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC---
T ss_pred             EEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeec
Confidence            67788888877766543333    34446899999999876      89999999999999999999998753

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.89  E-value=1.8e-24  Score=207.53  Aligned_cols=136  Identities=17%  Similarity=0.176  Sum_probs=111.6

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ..|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+  ..++++|
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--~~~ivmE  151 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVVME  151 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEEC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEEe
Confidence            4588999999999999999996 579999999998766566678999999999999999999999998744  4456788


Q ss_pred             ccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |+.|+.+..+..    .+...+.++.||+.||+|||+      |+||+|||++.++.+|++|||+++.+
T Consensus       152 y~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  220 (346)
T 4fih_A          152 FLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQV  220 (346)
T ss_dssp             CCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceec
Confidence            886654433322    223344556899999999976      89999999999999999999998754

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.89  E-value=1.8e-24  Score=207.78  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=104.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++++..  ....+.+.+|++++++++|||||++++++.+.+  ..++
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~--~~yi  100 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENG--SLYI  100 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEE
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECC--EEEE
Confidence            36799999999999999999996 579999999997654  234577999999999999999999999987643  3455


Q ss_pred             eecccC-CCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSS-ASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~-~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++||+. |++.+.+...      +.....++.||+.||+|||+      |+||+|||++.++.+|++|||+++.+
T Consensus       101 VmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  175 (350)
T 4b9d_A          101 VMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVL  175 (350)
T ss_dssp             EEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCC
T ss_pred             EEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceee
Confidence            677775 5555555322      22234456899999999876      89999999999999999999999865

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.89  E-value=2e-24  Score=205.47  Aligned_cols=136  Identities=18%  Similarity=0.126  Sum_probs=105.2

Q ss_pred             hhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      +++.+.+.||+|+||+||+|++      .+++.||||+++... ....++|.+|+.++++++|||||+++|+|...+  .
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~--~  103 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ--P  103 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--S
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECC--E
Confidence            4567778999999999999985      246789999997554 344678999999999999999999999997633  3


Q ss_pred             eeeeecccCC-Ccccccccc--------------------ccccccccccccccceeecc------CCCcccEEEeeCCC
Q 010856          434 CLCLFHHSSA-SASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG  486 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~  486 (499)
                      ..+++||+.+ ++.+.+...                    +.....++.|||+||+|||+      |+||.|||+++++.
T Consensus       104 ~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~  183 (308)
T 4gt4_A          104 LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLN  183 (308)
T ss_dssp             CEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGC
T ss_pred             EEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCC
Confidence            4556777754 544444221                    11233457899999999876      89999999999999


Q ss_pred             eEEEEEEEeecc
Q 010856          487 VEVICFVFEILL  498 (499)
Q Consensus       487 ~~~~~f~~~~~~  498 (499)
                      +|++|||+++.+
T Consensus       184 ~Ki~DFGlar~~  195 (308)
T 4gt4_A          184 VKISDLGLFREV  195 (308)
T ss_dssp             EEECCSCCBCGG
T ss_pred             EEECCcccceec
Confidence            999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=9.3e-25  Score=212.33  Aligned_cols=233  Identities=15%  Similarity=0.158  Sum_probs=193.3

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCccc-CCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGG-IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      ++++.|++++|.+.+..+.  +..++ +|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~--~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE--HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS--CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchh--hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            7899999999999988765  44577 899999999999865 7778999999999999999998878888999999999


Q ss_pred             Eecccc-ccccc-CCccccCcccccEEeeecC-CCCCc-CCccccCCc-cCCeeecccc--CCCC--CCccccCCCCCcE
Q 010856           84 LGLEDN-KLEGS-IPDDICHLAELYRLDLDGN-KLSGS-LPACFSNLT-SLRIVSLGSN--KLTS--VPLTFWNLKDILN  154 (499)
Q Consensus        84 L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~~--~~~~~~~l~~L~~  154 (499)
                      |++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|  .++.  ++..+..+++|++
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence            999999 67753 5566888999999999999 88854 466678899 9999999999  5553  6777888999999


Q ss_pred             EEcCCCc-CCCCCcccccCCCCccEEEccCCc-ccccCcccccCCcCCceeeCcCCcCCCCCCccccCC-CCCCEEeCCC
Q 010856          155 LNFSSNF-LTSPLPLEIGNLKVLIGIDFSMNN-FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDL-ISLKFLNLSN  231 (499)
Q Consensus       155 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~  231 (499)
                      |++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++| ++..   .+..+ .++..|++++
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINC  302 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESC
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEec
Confidence            9999999 777777788999999999999995 33332336788999999999999 5433   33333 2366677999


Q ss_pred             CcCCccCcccccC
Q 010856          232 NNLSGAIPASLEK  244 (499)
Q Consensus       232 N~l~~~~~~~~~~  244 (499)
                      |++++..|..+..
T Consensus       303 n~l~~~~~~~~~~  315 (336)
T 2ast_B          303 SHFTTIARPTIGN  315 (336)
T ss_dssp             CCSCCTTCSSCSS
T ss_pred             ccCccccCCcccc
Confidence            9999888877654

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.89  E-value=2.6e-24  Score=203.26  Aligned_cols=137  Identities=13%  Similarity=0.132  Sum_probs=111.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++++..   ....+.+.+|++++++++|||||++++++.+.+  ..+
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~y  108 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE--KLY  108 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEE
Confidence            35799999999999999999996 579999999997643   344678999999999999999999999988744  345


Q ss_pred             eeecccC-CCcccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSS-ASASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~-~~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++||+. |++.+.+.....    ..+.++.||+.||+|||+      |+||+|||++.++.+|++|||+++.+
T Consensus       109 ivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~  182 (311)
T 4aw0_A          109 FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL  182 (311)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceec
Confidence            5677764 555555543333    344456899999999876      89999999999999999999999865

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.89  E-value=5.6e-24  Score=209.19  Aligned_cols=136  Identities=17%  Similarity=0.176  Sum_probs=112.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ..|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||+++++|...+  ..++++|
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--~~~iVmE  228 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--ELWVVME  228 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECC--EEEEEEe
Confidence            5699999999999999999996 579999999998776666778999999999999999999999998744  4556778


Q ss_pred             ccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |+.|+.+..+..    .+.....++.||+.||+|||+      |+||+|||++.++.+|++|||+++.+
T Consensus       229 y~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~  297 (423)
T 4fie_A          229 FLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQV  297 (423)
T ss_dssp             CCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEEC
T ss_pred             CCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceEC
Confidence            886654443322    223344556899999999876      89999999999999999999998754

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.88  E-value=1.1e-23  Score=199.68  Aligned_cols=139  Identities=16%  Similarity=0.173  Sum_probs=104.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcccc------
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITF------  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~------  431 (499)
                      .++|+..+.||+|+||+||+|+. .+|+.||||+++.... ...+.+.+|+++|++++|||||++++++...+.      
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            45799999999999999999996 5799999999976543 335679999999999999999999999865332      


Q ss_pred             ----ceeeeeecccCCC-cccccccccc-------ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEE
Q 010856          432 ----TVCLCLFHHSSAS-ASASLVSSLT-------LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       432 ----~~~~~l~~~~~~~-~~~~l~~~~~-------~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~  493 (499)
                          ...++++||+.|+ +.+.+.....       ....++.|+++||+|||+      |+||+||+++.++.+|++|||
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFG  163 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFG  163 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCc
Confidence                1235567777554 4333332221       123456899999999766      899999999999999999999


Q ss_pred             Eeecc
Q 010856          494 FEILL  498 (499)
Q Consensus       494 ~~~~~  498 (499)
                      +++.+
T Consensus       164 la~~~  168 (299)
T 4g31_A          164 LVTAM  168 (299)
T ss_dssp             CC---
T ss_pred             cceec
Confidence            98764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=4e-22  Score=179.76  Aligned_cols=162  Identities=23%  Similarity=0.225  Sum_probs=83.3

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +|++|++++|+++++.+..|..+++|++|++++|+++...+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            45555555555554444445555555555555555554444444555555555555555544433344444555555555


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP  191 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (499)
                      +|++++..+..|..                       +++|++|++++|.+++..+..+..+++|+.|++++|.+.+   
T Consensus       109 ~N~l~~~~~~~~~~-----------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A          109 TNQLQSLPDGVFDK-----------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             SSCCCCCCTTTTTT-----------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CCcCcccCHhHhcc-----------------------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            55444444444444                       4555555555555554444445555555555555554432   


Q ss_pred             ccccCCcCCceeeCcCCcCCCCCCccccCCCC
Q 010856          192 TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIS  223 (499)
Q Consensus       192 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  223 (499)
                          .+++|++|+++.|++++.+|..++.++.
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                2345666666666666666655555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=7e-22  Score=178.16  Aligned_cols=179  Identities=25%  Similarity=0.281  Sum_probs=133.8

Q ss_pred             EEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccC
Q 010856           59 IVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNK  138 (499)
Q Consensus        59 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  138 (499)
                      .++++++.++.+ |..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        11 ~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            445555555422 2222  2356666666666665555556666666666666666666555566777777777777777


Q ss_pred             CCCCCcc-ccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCcc
Q 010856          139 LTSVPLT-FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS  217 (499)
Q Consensus       139 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  217 (499)
                      ++.++.. +..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+     
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----  162 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----  162 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence            7776543 5677888888888888887777778999999999999999998888789999999999999998764     


Q ss_pred             ccCCCCCCEEeCCCCcCCccCcccccCCCC
Q 010856          218 FGDLISLKFLNLSNNNLSGAIPASLEKLSY  247 (499)
Q Consensus       218 l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  247 (499)
                        .+++|+.|+++.|++++.+|..++.++.
T Consensus       163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 --TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --CCCCHHHHHHHHHhCCceeeccCccccC
Confidence              4578999999999999999998887765

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.3e-23  Score=199.06  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=105.1

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .+++.+.+.||+|+||+||+|++++  .||||+++...  ....+.|.+|++++++++|||||+++|++...  . .+++
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~--~-~~iV  109 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD--N-LAIV  109 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--S-CEEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC--e-EEEE
Confidence            4567788999999999999998743  69999997543  23457899999999999999999999987542  2 3456


Q ss_pred             ecccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +||+.| ++.+.++.     .+.....++.|||+||+|||+      |+||.|||+++++.+|++|||+++.+
T Consensus       110 mEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~  182 (307)
T 3omv_A          110 TQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVK  182 (307)
T ss_dssp             EECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred             EEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceec
Confidence            777754 44444432     222344557899999999977      89999999999999999999999764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=1.1e-21  Score=186.27  Aligned_cols=170  Identities=25%  Similarity=0.342  Sum_probs=88.2

Q ss_pred             CCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEc
Q 010856           78 LQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF  157 (499)
Q Consensus        78 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l  157 (499)
                      +++|+.|++++|.+...  ..+..+++|++|++++|++++..+  +..+++|+.|++++|+++.++. +..+++|++|++
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            34444444444444322  123444444444444444443322  4444444444444444444332 444555555555


Q ss_pred             CCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCcc
Q 010856          158 SSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGA  237 (499)
Q Consensus       158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  237 (499)
                      ++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|++++..+  +..+++|+.|++++|++++.
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            55555442  2344555555555555555543  345566666666666666664433  66666666666666666643


Q ss_pred             CcccccCCCCCCEEEccCCcCcc
Q 010856          238 IPASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       238 ~~~~~~~l~~L~~L~l~~N~l~~  260 (499)
                       + .+..+++|+.|++++|+++.
T Consensus       194 -~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          194 -R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -h-hhccCCCCCEEECcCCcccC
Confidence             2 35666666666666666653

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.86  E-value=6.3e-23  Score=192.86  Aligned_cols=135  Identities=17%  Similarity=0.180  Sum_probs=103.8

Q ss_pred             ccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc--ccceeeeee
Q 010856          364 SENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI--TFTVCLCLF  438 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~--~~~~~~~l~  438 (499)
                      ...+.||+|+||+||+|+. .+++.||+|++....  ....+.|.+|++++++++|||||+++++|...  .....++++
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            5667899999999999996 468999999997654  23456799999999999999999999998652  122345577


Q ss_pred             cccCC-Ccccccccc----ccccccccccccccceeecc--------CCCcccEEEee-CCCeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVL-EPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~-~~~~~~~~f~~~~~~  498 (499)
                      ||+.| ++.+.+...    +.....++.||+.||+|||+        |+||+|||+++ ++.+|++|||++++.
T Consensus       109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~  182 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  182 (290)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeC
Confidence            77755 444444332    22344556899999998865        78999999985 678999999998753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=2.5e-21  Score=199.05  Aligned_cols=180  Identities=27%  Similarity=0.294  Sum_probs=92.9

Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecc
Q 010856           56 NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLG  135 (499)
Q Consensus        56 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  135 (499)
                      +|+.|+|++|.+++ +|..+  +++|++|+|++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            55555555555554 23222  245555555555555 233   234555555555555554 333 332  55556666


Q ss_pred             ccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCC
Q 010856          136 SNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP  215 (499)
Q Consensus       136 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  215 (499)
                      +|+++.+|.   .+++|+.|++++|.++++ |.   .+++|+.|++++|++++ +|. |.  ++|+.|+|++|+|+ .+|
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            665555554   445556666666655542 22   34555566666665554 233 33  55666666666655 233


Q ss_pred             ccccCCCCC-------CEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccC
Q 010856          216 DSFGDLISL-------KFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       216 ~~l~~l~~L-------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  262 (499)
                      . +..  +|       +.|+|++|+|+. +|..+..+++|+.|++++|++++.+
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            3 332  44       666666666653 3444444666666666666665543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.86  E-value=3.5e-23  Score=195.56  Aligned_cols=135  Identities=13%  Similarity=0.125  Sum_probs=102.6

Q ss_pred             hhcccccccccCCcceEEEEEe----CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ++|++.+.||+|+||+||+|+.    .+++.||+|++++..  ......+.+|++++++++|||||++++++.+.+  ..
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~  101 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEG--KL  101 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETT--EE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--EE
Confidence            5799999999999999999985    247899999997653  233457889999999999999999999987743  44


Q ss_pred             eeeecccC-CCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSS-ASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~-~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++||+. |++.+.+....    ...+.++.|++.||+|||+      |+||+|+|++.++.+|++|||+++.
T Consensus       102 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  175 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKE  175 (304)
T ss_dssp             EEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEeccccccee
Confidence            55677775 45545444322    2344556899999999976      8999999999999999999999975

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=3.6e-21  Score=174.85  Aligned_cols=150  Identities=22%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             EEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCc
Q 010856          107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNN  185 (499)
Q Consensus       107 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  185 (499)
                      .++++++.++.+ |..+.  ++|+.|++++|+++.++. .+..+++|++|+|++|.++++.+..|.++++|++|+|++|+
T Consensus        15 ~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            445555555422 22222  345555555555554332 34444455555555555544444444444455555555554


Q ss_pred             ccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          186 FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       186 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      ++...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=1.8e-21  Score=190.87  Aligned_cols=155  Identities=25%  Similarity=0.276  Sum_probs=77.5

Q ss_pred             CCEEeccCCcCCccCCcccc-CCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecc
Q 010856           57 STIVNLGGNKLNGSIPITLS-KLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLG  135 (499)
Q Consensus        57 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  135 (499)
                      ++.|+|++|+|++..+..|. ++++|++|+|++|+|+...+..|..+++|++|+|++|+++...+..|..+++|+.|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44444444444444444443 44444444444444444444444444445555555555444444444444555555555


Q ss_pred             ccCCCCC-CccccCCCCCcEEEcCCCcCCCCCcccc---cCCCCccEEEccCCcccccCcccccCCcC--CceeeCcCCc
Q 010856          136 SNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLEI---GNLKVLIGIDFSMNNFSGVIPTEIGGLKN--LEYLFLGYNR  209 (499)
Q Consensus       136 ~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~  209 (499)
                      +|+++.+ +..+..+++|+.|+|++|.++++.+..|   ..+++|+.|+|++|+|+...+..+..++.  |+.|+|++|.
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            5555443 3344445555555555555554333333   34556666666666666555555555555  3666666666


Q ss_pred             CC
Q 010856          210 LQ  211 (499)
Q Consensus       210 l~  211 (499)
                      +.
T Consensus       201 ~~  202 (361)
T 2xot_A          201 LE  202 (361)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=6.2e-21  Score=196.08  Aligned_cols=189  Identities=26%  Similarity=0.369  Sum_probs=159.8

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +|+.|+|++|++++ +|..+  .++|++|+|++|.|+ .+|   ..+++|+.|+|++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            79999999999997 55545  378999999999999 455   457899999999999997 555 655  99999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP  191 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (499)
                      +|++++ +|.   .+++|+.|++++|+++.+|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|+|+. +|
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-LP  196 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-hh
Confidence            999997 444   67999999999999999987   57899999999999998 444 65  899999999999994 44


Q ss_pred             ccccCCcCC-------ceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCC
Q 010856          192 TEIGGLKNL-------EYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSY  247 (499)
Q Consensus       192 ~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  247 (499)
                      . +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..+..++.
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            4 554  77       99999999999 56777777999999999999999988888776543

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.86  E-value=8.5e-23  Score=201.15  Aligned_cols=138  Identities=20%  Similarity=0.174  Sum_probs=112.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc----ccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI----TFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~----~~~~  433 (499)
                      ++|.+.+.||+|+||+||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|||||++++++...    +...
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            4699999999999999999996 579999999997543  23456789999999999999999999987542    2234


Q ss_pred             eeeeecccCCCccccccccccc----cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSASASASLVSSLTL----SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++++||++|++...+......    .+.++.||+.||+|||+      |+||+|||++.++.++++|||+++.+
T Consensus       134 ~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~  208 (398)
T 4b99_A          134 VYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGL  208 (398)
T ss_dssp             EEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC
T ss_pred             EEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeec
Confidence            5678889988877666543333    44556899999999877      89999999999999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=177.89  Aligned_cols=154  Identities=25%  Similarity=0.314  Sum_probs=111.3

Q ss_pred             EEeeecCCCCCcCCccccCCccCCeeeccccCCCCCC--ccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCC
Q 010856          107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP--LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN  184 (499)
Q Consensus       107 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  184 (499)
                      .+++++|.++. +|..+.  ..++.|++++|+++.++  ..+..+++|++|++++|.++++.+..|.++++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            55666666653 233332  34566666666666652  23566777777777777777666667777777778888888


Q ss_pred             cccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCC
Q 010856          185 NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       185 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  263 (499)
                      ++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            7777777777788888888888888887777788888888888888888887778888888888888888888876554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.86  E-value=1.2e-21  Score=203.50  Aligned_cols=193  Identities=20%  Similarity=0.294  Sum_probs=133.0

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      ++..+.+..+.+.+..+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..+  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            45555666666664433  45667777777777777643 2 46777777777777777775543  6777777777777


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP  191 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (499)
                      +|.+++.  ..+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|.++++  ..+..+++|+.|+|++|.+++..|
T Consensus        96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SSCCCCC--TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCCC--hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            7777743  25677777777777777777764 466777777777777777764  456677777777777777776544


Q ss_pred             ccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCc
Q 010856          192 TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP  239 (499)
Q Consensus       192 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  239 (499)
                        +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.....
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence              67777777777777777754  356777777777777777765433

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.85  E-value=5.2e-23  Score=199.19  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=111.8

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCC-CCcccc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRH-RNLIKI  422 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H-~niv~l  422 (499)
                      +....++...++|++.+.||+|+||+||+|++.      .++.||||+++.... ...+.|.+|+++|++++| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            445566667788999999999999999999852      246899999976543 345679999999999965 899999


Q ss_pred             ceeEEccccceeeeeecccC-CCcccccccc--------------------ccccccccccccccceeecc------CCC
Q 010856          423 LHGVAVITFTVCLCLFHHSS-ASASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVD  475 (499)
Q Consensus       423 ~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~  475 (499)
                      +|+|...+. ..++++||+. |++.+.++..                    +.....++.|||+||+|||+      |+|
T Consensus       134 ~g~~~~~~~-~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK  212 (353)
T 4ase_A          134 LGACTKPGG-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA  212 (353)
T ss_dssp             EEEECCTTS-CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             EEEEEecCC-EEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccC
Confidence            999876332 3345667765 4544444321                    11223446899999999866      899


Q ss_pred             cccEEEeeCCCeEEEEEEEeecc
Q 010856          476 FAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       476 p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |.|||+++++.+|++|||+++.+
T Consensus       213 ~~NILl~~~~~vKi~DFGlar~~  235 (353)
T 4ase_A          213 ARNILLSEKNVVKICDFGLARDI  235 (353)
T ss_dssp             GGGEEECGGGCEEECCCGGGSCT
T ss_pred             ccceeeCCCCCEEECcchhhhhc
Confidence            99999999999999999999754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=5e-21  Score=181.73  Aligned_cols=187  Identities=27%  Similarity=0.368  Sum_probs=156.8

Q ss_pred             EECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccc
Q 010856           10 IYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDN   89 (499)
Q Consensus        10 L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   89 (499)
                      +.+..+.+++..+   ...++ +|++|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        29 ~~l~~~~~~~~~~---~~~l~-~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           29 DNLKKKSVTDAVT---QNELN-SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHTTCSCTTSEEC---HHHHH-TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHhcCCCcccccc---hhhcC-cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            3456666665433   34566 899999999999865 3 48889999999999999986555  889999999999999


Q ss_pred             cccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCccc
Q 010856           90 KLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLE  169 (499)
Q Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (499)
                      .+++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+++..+  
T Consensus       101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--  173 (291)
T 1h6t_A          101 KVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--  173 (291)
T ss_dssp             CCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             cCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--
Confidence            99853  3488999999999999999864  4688899999999999999988 578889999999999999987655  


Q ss_pred             ccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCC
Q 010856          170 IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS  213 (499)
Q Consensus       170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  213 (499)
                      +..+++|+.|++++|.+++.  ..+..+++|+.|++++|+++..
T Consensus       174 l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred             hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence            88999999999999999865  3488999999999999998854

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.85  E-value=2e-22  Score=191.93  Aligned_cols=135  Identities=16%  Similarity=0.082  Sum_probs=102.0

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccc--ceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITF--TVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~--~~~~~l~  438 (499)
                      .+|.+.+.||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|...+.  ...++++
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            4588889999999999999998 688999999975431 11223455666678999999999999976432  2456678


Q ss_pred             cccCCC-ccccccc---cccccccccccccccceeec--------------cCCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSAS-ASASLVS---SLTLSRPAKGGGFRGCVLWH--------------VGVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~-~~~~l~~---~~~~~~~~~~~i~~gl~yLH--------------~~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ||+.|+ +.+.++.   .+.....++.|+++||+|||              +|+||.|||++.++.+|++|||+++.
T Consensus        81 Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~  157 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             cCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence            888654 4444432   22234455789999999885              57999999999999999999999875

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.85  E-value=1.8e-22  Score=193.07  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=104.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .+.|...+.||+|+||+||+|+. .+|+.||||+++....     ..+|++++++++|||||++++++.+.+  ..++++
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~--~~~ivm  129 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGP--WVNIFM  129 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEE
Confidence            45688889999999999999996 5799999999976432     247999999999999999999987643  345577


Q ss_pred             cccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~~  498 (499)
                      ||+.| ++.+.+...    +.....++.||+.||+|||+      |+||+|||++.++ .+|++|||+++.+
T Consensus       130 Ey~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~  201 (336)
T 4g3f_A          130 ELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCL  201 (336)
T ss_dssp             CCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC
T ss_pred             eccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEc
Confidence            77755 554444332    23344556899999999977      8999999998876 5999999999764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=2.6e-21  Score=175.76  Aligned_cols=153  Identities=25%  Similarity=0.309  Sum_probs=71.3

Q ss_pred             eeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcC
Q 010856          131 IVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL  210 (499)
Q Consensus       131 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  210 (499)
                      .++++++.++.+|..+.  ++|+.|++++|.++++.+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            34444444444443332  3444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCC-CCCCCCccccccCCCcCCCCC
Q 010856          211 QGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~l~~~~l~~N~~~c~~  285 (499)
                      +.+.+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+. ...++.++.+++.+|+|.|+|
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            444444444444444444444444444444444444444444444444443332 122344444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.6e-20  Score=170.53  Aligned_cols=157  Identities=23%  Similarity=0.225  Sum_probs=142.3

Q ss_pred             CCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCc-ccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcC
Q 010856          129 LRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLP-LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY  207 (499)
Q Consensus       129 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  207 (499)
                      -+.+++++|.++.+|..+.  +.+++|++++|.+++..+ ..|..+++|+.|++++|++++..+..|.++++|++|+|++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            3589999999999997663  467899999999998754 5689999999999999999998888999999999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCCcCCCCCC
Q 010856          208 NRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       208 n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N~~~c~~~  286 (499)
                      |++++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|.. ..+++++.+++.+|+|.|+|+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999988888999999999999999999999999999999999999999999886654 457889999999999999875


Q ss_pred             C
Q 010856          287 N  287 (499)
Q Consensus       287 ~  287 (499)
                      .
T Consensus       171 l  171 (220)
T 2v70_A          171 L  171 (220)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=8.2e-21  Score=186.15  Aligned_cols=177  Identities=25%  Similarity=0.252  Sum_probs=90.1

Q ss_pred             CEEeccCCcCCccCCccccCCCCCCeEecccccccccCCcccc-CcccccEEeeecCCCCCcCCccccCCccCCeeeccc
Q 010856           58 TIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGS  136 (499)
Q Consensus        58 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  136 (499)
                      +.+++++|.++. +|..+.  +.++.|+|++|++++..+..|. .+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666666653 333222  2355556665555555444444 555555555555555554444555555555555555


Q ss_pred             cCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCc
Q 010856          137 NKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD  216 (499)
Q Consensus       137 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  216 (499)
                      |+++.                       +.+..|..+++|+.|+|++|+|+...+..|.++++|++|+|++|++++..+.
T Consensus        98 N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           98 NHLHT-----------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             SCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             CcCCc-----------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence            55544                       3333444444455555555555444444555555555555555555543333


Q ss_pred             cc---cCCCCCCEEeCCCCcCCccCcccccCCCC--CCEEEccCCcCcc
Q 010856          217 SF---GDLISLKFLNLSNNNLSGAIPASLEKLSY--LENLNLSFNKLEG  260 (499)
Q Consensus       217 ~l---~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~  260 (499)
                      .|   ..+++|+.|+|++|+|+...+..+..++.  ++.|++++|++.+
T Consensus       155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            33   34555666666666665554455555554  2555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=3.7e-20  Score=192.40  Aligned_cols=188  Identities=27%  Similarity=0.365  Sum_probs=124.8

Q ss_pred             EEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEeccc
Q 010856            9 LIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLED   88 (499)
Q Consensus         9 ~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   88 (499)
                      .+.+..+.+.+..+   +..++ +|+.|++++|.+..+ + .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++
T Consensus        25 ~l~l~~~~i~~~~~---~~~L~-~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT---QNELN-SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHTTCSCTTSEEC---HHHHT-TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHhccCCCcccccc---hhcCC-CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            34455555554433   23444 677777777777643 2 46677777777777777765444  66777777777777


Q ss_pred             ccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcc
Q 010856           89 NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPL  168 (499)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (499)
                      |.+.+.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|+++.+ ..+..+++|+.|+|++|.+++..+ 
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence            777642  2566777777777777777753  3466677777777777777766 456677777777777777776544 


Q ss_pred             cccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCC
Q 010856          169 EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS  213 (499)
Q Consensus       169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  213 (499)
                       +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+.
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence             66777777777777777654  3466777777777777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=7e-20  Score=167.48  Aligned_cols=154  Identities=25%  Similarity=0.237  Sum_probs=115.4

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      +-+.++++++.++. +|..+.  ++|++|+|++|.+++..+..|..+++|++|+|++|+++...+..|..+++|++|+|+
T Consensus        20 s~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            56677887777774 343333  678888888888887777778888888888888888876666667778888888888


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccc
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSG  188 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (499)
                      +|++++..+..|..+++|+.|+|++|+++.+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            88888777777777888888888888888877777777777777777777776666666667777777777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=7.8e-20  Score=167.15  Aligned_cols=154  Identities=25%  Similarity=0.301  Sum_probs=98.2

Q ss_pred             ccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCC-CccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccC
Q 010856          105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSM  183 (499)
Q Consensus       105 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  183 (499)
                      -+.++.+++.++.+ |..+.  ++|+.|+|++|+++.+ +..+..+++|++|+|++|.++.+.+..|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASV-PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCcc-CCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            34566666666633 33332  5666777777776664 44566666677777777766665555566666666777766


Q ss_pred             CcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccC
Q 010856          184 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       184 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  262 (499)
                      |++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            6666665555666666666666666666 44556666666666666666666655556666666666666666666544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=4.7e-23  Score=216.07  Aligned_cols=274  Identities=11%  Similarity=0.061  Sum_probs=132.2

Q ss_pred             CCCCCCEEECcCCCCCccCCh---hccccccccccEEEcccCCCcc----cCCccccCCCCCCEEeccCCcCCccCCccc
Q 010856            3 NCKSLTLIYLSNNPLDGILPK---TSVGNLSHSLEDFRMYNCNISG----GIPEEISNLTNSTIVNLGGNKLNGSIPITL   75 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   75 (499)
                      ++++|++|+|++|.+++....   .....++ +|++|++++|.+++    ..+..+.++++|++|++++|.+.+ .+..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence            467788888888876654322   1233455 67777777777752    233344566777777777776543 22333


Q ss_pred             cCCCCCCeEec---------------------------ccccccccCCccccCcccccEEeeecCCCCCcCC-ccccCCc
Q 010856           76 SKLQKLQGLGL---------------------------EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP-ACFSNLT  127 (499)
Q Consensus        76 ~~l~~L~~L~L---------------------------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  127 (499)
                      ..+++|++|++                           +++.. ...+..+..+++|++|++++|.+++... ..+..++
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            33333333333                           33221 1334455566777777777777553222 2235556


Q ss_pred             cCCeeeccccCCCC--CCccccCCCCCcEEEcCC-----------CcCCCCCc-ccccCCCCccEEEccCCcccccCccc
Q 010856          128 SLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSS-----------NFLTSPLP-LEIGNLKVLIGIDFSMNNFSGVIPTE  193 (499)
Q Consensus       128 ~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~-----------n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (499)
                      +|+.|+++ +.+..  ++.....+++|++|++++           |.+++... .....+++|++|+++.|.+++..+..
T Consensus       319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence            66666665 22222  222223445555555551           33332111 11222444444444444444333333


Q ss_pred             c----------------------------------cCCcCCceeeCcCCc--CCCCCCccc-cCCCCCCEEeCCCCcCCc
Q 010856          194 I----------------------------------GGLKNLEYLFLGYNR--LQGSIPDSF-GDLISLKFLNLSNNNLSG  236 (499)
Q Consensus       194 l----------------------------------~~l~~L~~L~L~~n~--l~~~~~~~l-~~l~~L~~L~l~~N~l~~  236 (499)
                      +                                  .++++|++|++++|.  +++.....+ ..+++|+.|++++|++++
T Consensus       398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  477 (592)
T 3ogk_B          398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD  477 (592)
T ss_dssp             HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred             HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence            3                                  334445555544321  332222222 225556666666666553


Q ss_pred             c-CcccccCCCCCCEEEccCCcCcccC-CC-CCCCCCccccccCCCc
Q 010856          237 A-IPASLEKLSYLENLNLSFNKLEGEI-PR-GGSFGNFSAESFEGNE  280 (499)
Q Consensus       237 ~-~~~~~~~l~~L~~L~l~~N~l~~~~-~~-~~~~~~l~~~~l~~N~  280 (499)
                      . .+..+..+++|+.|++++|++++.. +. ...+++++.+++++|.
T Consensus       478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            2 2333455566666666666654321 11 1124555566666555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=7e-21  Score=177.89  Aligned_cols=149  Identities=20%  Similarity=0.263  Sum_probs=61.1

Q ss_pred             ccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcE
Q 010856           75 LSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILN  154 (499)
Q Consensus        75 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~  154 (499)
                      +..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|+.|++++|+++.++....  ++|++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred             hhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence            33444444444444444322 1 33444444444444444443322  4444444444444444444332111  44444


Q ss_pred             EEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 010856          155 LNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL  234 (499)
Q Consensus       155 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l  234 (499)
                      |++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++
T Consensus       111 L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          111 LFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             EEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            44444444432  1233344444444444444332  1233444444444444444433  3334444444444444444


Q ss_pred             C
Q 010856          235 S  235 (499)
Q Consensus       235 ~  235 (499)
                      +
T Consensus       185 ~  185 (263)
T 1xeu_A          185 V  185 (263)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=9.2e-20  Score=162.68  Aligned_cols=154  Identities=16%  Similarity=0.243  Sum_probs=105.5

Q ss_pred             ccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCC
Q 010856           51 ISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLR  130 (499)
Q Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  130 (499)
                      ...+++|++|++++|.++. .| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            3556677777777777763 33 46677777777777776552  24566777777777777777766666777777777


Q ss_pred             eeeccccCCCC-CCccccCCCCCcEEEcCCCc-CCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCC
Q 010856          131 IVSLGSNKLTS-VPLTFWNLKDILNLNFSSNF-LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN  208 (499)
Q Consensus       131 ~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  208 (499)
                      +|++++|+++. .+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|++++..  .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            77777777775 55567777777777777776 6543 3 5677777888888887777542  6677788888888888


Q ss_pred             cCCC
Q 010856          209 RLQG  212 (499)
Q Consensus       209 ~l~~  212 (499)
                      ++.+
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            7653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=3.6e-20  Score=172.99  Aligned_cols=171  Identities=20%  Similarity=0.255  Sum_probs=145.4

Q ss_pred             CCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEE
Q 010856           77 KLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLN  156 (499)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  156 (499)
                      .+.++..+++++|.+++..  .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++++. +..+++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            4566778888888887553  578899999999999999854 3 68889999999999999999887 88999999999


Q ss_pred             cCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCc
Q 010856          157 FSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG  236 (499)
Q Consensus       157 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  236 (499)
                      +++|++++..+  +.. ++|+.|++++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence            99999987543  223 8999999999999865  4588999999999999999865  368889999999999999987


Q ss_pred             cCcccccCCCCCCEEEccCCcCccc
Q 010856          237 AIPASLEKLSYLENLNLSFNKLEGE  261 (499)
Q Consensus       237 ~~~~~~~~l~~L~~L~l~~N~l~~~  261 (499)
                      .  ..+..+++|+.|++++|++++.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            6  6788899999999999999865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=1.1e-22  Score=210.27  Aligned_cols=190  Identities=23%  Similarity=0.200  Sum_probs=113.6

Q ss_pred             cCCCCCCEEeccCCcCCccCCccccCCCCCCeEeccccc-------------ccccCCccccCcccccEEe-eecCCCCC
Q 010856           52 SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNK-------------LEGSIPDDICHLAELYRLD-LDGNKLSG  117 (499)
Q Consensus        52 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~  117 (499)
                      ..+++|+.|+|++|+++ .+|..++.+++|+.|++++|.             +.+..|..+..+++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            56788888888888887 567778888888888887664             3445555666677777776 454432  


Q ss_pred             cCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCC
Q 010856          118 SLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGL  197 (499)
Q Consensus       118 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (499)
                               ..|+.+.+++|.++.++.     ..|+.|++++|.++++ |. +..+++|+.|+|++|.++ .+|..+..+
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             ---------chhhhhhhhcccccccCc-----cCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                     223333444444443321     2355566666665542 33 555566666666666665 345555666


Q ss_pred             cCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccC-cccccCCCCCCEEEccCCcCcccCC
Q 010856          198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAI-PASLEKLSYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       198 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~  263 (499)
                      ++|+.|+|++|++++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|++++|++++.+|
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            666666666666654 33 5556666666666666666554 5556666666666666666665544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=1.3e-19  Score=161.75  Aligned_cols=154  Identities=18%  Similarity=0.219  Sum_probs=105.7

Q ss_pred             cCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEE
Q 010856          100 CHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI  179 (499)
Q Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  179 (499)
                      ..+++|++|++++|.++. .+ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            445566666666666663 23 4556666666666666555544 56667777777777777766556667777778888


Q ss_pred             EccCCcccccCcccccCCcCCceeeCcCCc-CCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcC
Q 010856          180 DFSMNNFSGVIPTEIGGLKNLEYLFLGYNR-LQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL  258 (499)
Q Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  258 (499)
                      ++++|++++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|++++..  .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            888887776667777788888888888887 6533 3 5777888888888888887533  677788888888888887


Q ss_pred             cc
Q 010856          259 EG  260 (499)
Q Consensus       259 ~~  260 (499)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            53

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=7e-20  Score=162.61  Aligned_cols=155  Identities=26%  Similarity=0.346  Sum_probs=92.0

Q ss_pred             CeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcc-cccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCC
Q 010856          130 RIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPL-EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN  208 (499)
Q Consensus       130 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  208 (499)
                      +.+++++|+++.+|..+..  +|++|++++|.++++.+. .|..+++|++|++++|++++..|..|.++++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            4555666666555554432  566666666666554443 3566666666666666666666666666666666666666


Q ss_pred             cCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCCC
Q 010856          209 RLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       209 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~~  286 (499)
                      ++++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+.......+....+.++...|+.|
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            666666666666666777777777766666666666677777777777766554432111122223344444455543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.80  E-value=4e-22  Score=205.93  Aligned_cols=203  Identities=20%  Similarity=0.156  Sum_probs=168.7

Q ss_pred             cccccccEEEcccCCCcccCCccccCCCCCCEEeccCCc-------------CCccCCccccCCCCCCeEe-cccccccc
Q 010856           28 NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNK-------------LNGSIPITLSKLQKLQGLG-LEDNKLEG   93 (499)
Q Consensus        28 ~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~   93 (499)
                      ..+ +|+.|+|++|.++ .+|..++++++|+.|++++|.             +.+..|..+..+++|+.|+ ++.|.+  
T Consensus       347 ~~~-~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          347 TDE-QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             TTT-TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             cCc-cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            345 7999999999998 678889999999999997775             4556677788888899888 666654  


Q ss_pred             cCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCC
Q 010856           94 SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNL  173 (499)
Q Consensus        94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  173 (499)
                               .+|+.+.+++|.++...+      ..|+.|++++|+++.+|. +..+++|+.|+|++|.++ .+|..+..+
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                     456677788888774432      258899999999999986 899999999999999999 567899999


Q ss_pred             CCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCC-CccccCCCCCCEEeCCCCcCCccCcc---cccCCCCCC
Q 010856          174 KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI-PDSFGDLISLKFLNLSNNNLSGAIPA---SLEKLSYLE  249 (499)
Q Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~  249 (499)
                      ++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++.++.   .+..+++|+
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            999999999999997 45 7899999999999999999876 89999999999999999999876553   234588999


Q ss_pred             EEEc
Q 010856          250 NLNL  253 (499)
Q Consensus       250 ~L~l  253 (499)
                      .|++
T Consensus       564 ~L~l  567 (567)
T 1dce_A          564 SILT  567 (567)
T ss_dssp             EEEC
T ss_pred             ccCC
Confidence            8875

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.80  E-value=2.3e-20  Score=192.89  Aligned_cols=137  Identities=16%  Similarity=0.187  Sum_probs=109.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|.+.+.||+|+||+||+|+. .+|+.||+|++........+.+.+|+++|+.++|||||++++++...+  ..++++
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~--~~~iv~  233 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--EMVMIY  233 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEE
Confidence            36799999999999999999996 579999999998765555678999999999999999999999987643  445567


Q ss_pred             cccC-CCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeC--CCeEEEEEEEeecc
Q 010856          439 HHSS-ASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE--PGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~-~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~--~~~~~~~f~~~~~~  498 (499)
                      ||+. |++.+.+..     .+...+.++.||+.||+|||+      |+||.|++++.+  +.++++|||+++.+
T Consensus       234 E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~  307 (573)
T 3uto_A          234 EFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL  307 (573)
T ss_dssp             ECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEEC
T ss_pred             eecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEc
Confidence            7775 455444432     122344556899999999876      899999999854  78999999999764

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.80  E-value=1.5e-20  Score=183.10  Aligned_cols=137  Identities=16%  Similarity=0.105  Sum_probs=106.6

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe----CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEcccc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITF  431 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~  431 (499)
                      ....+.|++.+.||+|+||+||+|+.    .+++.||+|++.+..  ...++.+|+++++.+ +|||||++++++...+ 
T Consensus        17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~-   93 (361)
T 4f9c_A           17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND-   93 (361)
T ss_dssp             GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT-
T ss_pred             CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC-
Confidence            34457799999999999999999984    247889999986543  346788999999988 7999999999987744 


Q ss_pred             ceeeeeecccCCC-cccccc-ccccccccccccccccceeecc------CCCcccEEEeeC-CCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSAS-ASASLV-SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-PGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~-~~~~l~-~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-~~~~~~~f~~~~~  497 (499)
                       ..++++||+.|+ +.+.+. ......+.++.|++.||+|||+      |+||+|||++.+ +.++++|||+++.
T Consensus        94 -~~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~  167 (361)
T 4f9c_A           94 -HVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQG  167 (361)
T ss_dssp             -EEEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             -EEEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcc
Confidence             445677777654 433332 2233455567899999998876      899999999876 6899999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=3.7e-20  Score=197.14  Aligned_cols=218  Identities=22%  Similarity=0.250  Sum_probs=115.2

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCC-----EEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCccccc
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNST-----IVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELY  106 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  106 (499)
                      .++.|+|.+|.+... +..+.....|.     .++++.|.+. ..+..|..+++|+.|+|++|.+. .+|..+..+++|+
T Consensus       174 ~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~  250 (727)
T 4b8c_D          174 LTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred             ccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence            567777777776643 32222222222     2233344444 55677888888999999998888 5566666888899


Q ss_pred             EEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcc
Q 010856          107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF  186 (499)
Q Consensus       107 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  186 (499)
                      +|+|++|.++ .+|..|..+++|+.|+|++|+|+.+|..+..+++|++|+|++|.|+. +|..|..+++|+.|+|++|.+
T Consensus       251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCC
T ss_pred             EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCcc
Confidence            9999999888 66778888899999999999998888888888999999999998874 566688899999999999999


Q ss_pred             cccCcccccCCcC-CceeeCcCCcCCCCCCccccCCCCCCEEeCCCC--------cCCccCcccccCCCCCCEEEccCCc
Q 010856          187 SGVIPTEIGGLKN-LEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNN--------NLSGAIPASLEKLSYLENLNLSFNK  257 (499)
Q Consensus       187 ~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N--------~l~~~~~~~~~~l~~L~~L~l~~N~  257 (499)
                      ++..|..+..+.. +..|+|++|.+++..|.      .|+.|+++.|        .+.+..+..+..+..+....+++|-
T Consensus       329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni  402 (727)
T 4b8c_D          329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT  402 (727)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------C
T ss_pred             CCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence            8887777755432 23478889988877665      4556666666        3444444455566666777777777


Q ss_pred             Ccc
Q 010856          258 LEG  260 (499)
Q Consensus       258 l~~  260 (499)
                      +.+
T Consensus       403 l~~  405 (727)
T 4b8c_D          403 LCQ  405 (727)
T ss_dssp             CCG
T ss_pred             ccc
Confidence            753

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.79  E-value=3.4e-20  Score=190.76  Aligned_cols=137  Identities=15%  Similarity=0.088  Sum_probs=106.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHH---HHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVE---CEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E---~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .++|.+.++||+|+||+||+|+. .+|+.||||++++..   ......+.+|   +++++.++|||||++++++.+.+  
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~--  265 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--  265 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC--
Confidence            47899999999999999999996 479999999997643   2223334444   56778899999999999988744  


Q ss_pred             eeeeeecccC-CCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          433 VCLCLFHHSS-ASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       433 ~~~~l~~~~~-~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ..++++||+. |++...+....    ...+.++.||+.||+|||+      |+||+|||++.++.++++|||+++.+
T Consensus       266 ~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~  342 (689)
T 3v5w_A          266 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF  342 (689)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence            3445677765 55555554332    3344556899999999877      89999999999999999999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=3e-21  Score=202.33  Aligned_cols=257  Identities=18%  Similarity=0.149  Sum_probs=155.3

Q ss_pred             CCCCCCEEECcCCCCCccCCh---hccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcC------------
Q 010856            3 NCKSLTLIYLSNNPLDGILPK---TSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKL------------   67 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l------------   67 (499)
                      ++++|++|++++|.+++....   ..+..++ +|++|++++|.+.+ .+..+..+++|++|++++...            
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            467888888888888643221   1234555 78888888877654 334444444444444432110            


Q ss_pred             --------------CccCCccccCCCCCCeEecccccccccCC-ccccCc------------------------ccccEE
Q 010856           68 --------------NGSIPITLSKLQKLQGLGLEDNKLEGSIP-DDICHL------------------------AELYRL  108 (499)
Q Consensus        68 --------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l------------------------~~L~~L  108 (499)
                                    ....|..+..+++|++|+|++|.+++... ..+..+                        ++|++|
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence                          11223334455666666666666543221 123344                        445555


Q ss_pred             eeec-----------CCCCCcC-CccccCCccCCeeeccccCCCC-CCccccC-CCCCcEEEcC----CCcCCCC-----
Q 010856          109 DLDG-----------NKLSGSL-PACFSNLTSLRIVSLGSNKLTS-VPLTFWN-LKDILNLNFS----SNFLTSP-----  165 (499)
Q Consensus       109 ~L~~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-l~~L~~L~l~----~n~l~~~-----  165 (499)
                      ++++           |.+++.. +.....+++|++|+++.|+++. .+..+.. +++|+.|+++    .|.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            5552           3333211 1112335666666666666654 2223333 6778888885    5666653     


Q ss_pred             CcccccCCCCccEEEccCCc--ccccCccccc-CCcCCceeeCcCCcCCCC-CCccccCCCCCCEEeCCCCcCCcc-Ccc
Q 010856          166 LPLEIGNLKVLIGIDFSMNN--FSGVIPTEIG-GLKNLEYLFLGYNRLQGS-IPDSFGDLISLKFLNLSNNNLSGA-IPA  240 (499)
Q Consensus       166 ~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~-~~~  240 (499)
                      .+..+.++++|+.|++++|.  +++..+..+. .+++|++|++++|++++. .+..+..+++|+.|++++|++++. .+.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            22235567888888887543  5544444443 489999999999999863 345568899999999999998754 344


Q ss_pred             cccCCCCCCEEEccCCcCccc
Q 010856          241 SLEKLSYLENLNLSFNKLEGE  261 (499)
Q Consensus       241 ~~~~l~~L~~L~l~~N~l~~~  261 (499)
                      ....+++|+.|++++|+++..
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCccCeeECcCCcCCHH
Confidence            456799999999999998854

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=2.2e-19  Score=173.69  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=69.7

Q ss_pred             CCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCc-eeeCcCCcCCCCCCccccCCCCCCEE
Q 010856          149 LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE-YLFLGYNRLQGSIPDSFGDLISLKFL  227 (499)
Q Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L  227 (499)
                      +++|+.|++++|.++.+....|.++++|+.|++.+| ++.+.+..|.++++|+ .+++.+ .++.+.+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566777777776666666666777777777777666 6656666677777776 777766 5655666667777777777


Q ss_pred             eCCCCcCCccCcccccCCCCCCEEE
Q 010856          228 NLSNNNLSGAIPASLEKLSYLENLN  252 (499)
Q Consensus       228 ~l~~N~l~~~~~~~~~~l~~L~~L~  252 (499)
                      ++++|+++.+.+.+|.++++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            7777777666666777777776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.76  E-value=1.8e-17  Score=163.89  Aligned_cols=244  Identities=12%  Similarity=0.073  Sum_probs=202.9

Q ss_pred             CCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         4 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      +..++.+.+.+ .++.+... +|.+ . +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+.+.+|.++++|+.
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~-aF~~-~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKD-AFRN-S-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTT-TTTT-C-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccCEehHh-hccc-C-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            46777888874 46656555 6665 3 6999999876 777888899885 799999986 777788889999999999


Q ss_pred             EecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCC
Q 010856           84 LGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus        84 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~  163 (499)
                      +++++|+++.+....|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.++...+.-.+|+.+.+. +.++
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT  260 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc
Confidence            99999999977777777 589999999854 77788899999999999999875 66666544444899999994 5577


Q ss_pred             CCCcccccCCCCccEEEccCCccc-----ccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccC
Q 010856          164 SPLPLEIGNLKVLIGIDFSMNNFS-----GVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAI  238 (499)
Q Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  238 (499)
                      .+....|.++++|+.+++.+|.+.     .+.+..|.++++|+.+.+. +.++.+....|.++++|+.+++..| ++.+.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            778889999999999999988775     5677889999999999999 4588788889999999999999655 77788


Q ss_pred             cccccCCCCCCEEEccCCcCccc
Q 010856          239 PASLEKLSYLENLNLSFNKLEGE  261 (499)
Q Consensus       239 ~~~~~~l~~L~~L~l~~N~l~~~  261 (499)
                      ..+|.++ +|+.+++++|.+...
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBC
T ss_pred             HHhCCCC-CCCEEEEcCCCCccc
Confidence            8999999 999999999987643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=2.7e-18  Score=152.33  Aligned_cols=173  Identities=21%  Similarity=0.277  Sum_probs=120.0

Q ss_pred             cEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc--ccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccC
Q 010856          106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT--FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSM  183 (499)
Q Consensus       106 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  183 (499)
                      +++++++|+++. +|..+.  .+|+.|++++|+++.++..  +..+++|++|++++|.+++..|..|.++++|+.|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            466666666653 333333  2677777777777776543  67778888888888888877778888888888888888


Q ss_pred             CcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcc-cccCCCCCCEEEccCCcCcccC
Q 010856          184 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA-SLEKLSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       184 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~  262 (499)
                      |++++..+..|.++++|++|+|++|++++..|..|..+++|+.|++++|+++...+. ++..  .++...+..+...+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~  165 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence            888888887888888888888888888888888888888999999999988754331 1111  1222233445555444


Q ss_pred             CCCCCCCCccccccCCCcCCCCC
Q 010856          263 PRGGSFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       263 ~~~~~~~~l~~~~l~~N~~~c~~  285 (499)
                      |..  +......++..+.+.|..
T Consensus       166 P~~--l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          166 PSK--VRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             STT--TTTSBGGGSCTTTCCCCC
T ss_pred             ChH--HcCCChhhCcHhhcCcCC
Confidence            443  334445566677777754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.75  E-value=1.1e-18  Score=168.11  Aligned_cols=149  Identities=19%  Similarity=0.175  Sum_probs=117.4

Q ss_pred             cccccCHHHHHHHhhh----------cccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCC
Q 010856          347 TWRTFSYLELFRATDE----------FSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIR  415 (499)
Q Consensus       347 ~~~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~  415 (499)
                      ....++.+++..++..          |...+.||+|+||.||+|+.. +|+.||||++........+.+.+|++++++++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  100 (321)
T 2c30_A           21 QSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQ  100 (321)
T ss_dssp             ----CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCC
T ss_pred             cCCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCC
Confidence            3456788888877764          777789999999999999975 79999999998766666788999999999999


Q ss_pred             CCCccccceeEEccccceeeeeecccCCCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCC
Q 010856          416 HRNLIKILHGVAVITFTVCLCLFHHSSASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP  485 (499)
Q Consensus       416 H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~  485 (499)
                      ||||+++++++...+  ..++++|++.|+.+..+..    .+.....++.|++.||+|||+      +++|.||+++.++
T Consensus       101 h~niv~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~  178 (321)
T 2c30_A          101 HFNVVEMYKSYLVGE--ELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDG  178 (321)
T ss_dssp             CTTBCCEEEEEEETT--EEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC
T ss_pred             CCCcceEEEEEEECC--EEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC
Confidence            999999999987643  4566788886654443322    222344456899999998876      8999999999999


Q ss_pred             CeEEEEEEEeec
Q 010856          486 GVEVICFVFEIL  497 (499)
Q Consensus       486 ~~~~~~f~~~~~  497 (499)
                      .++++|||++..
T Consensus       179 ~~kl~Dfg~~~~  190 (321)
T 2c30_A          179 RVKLSDFGFCAQ  190 (321)
T ss_dssp             CEEECCCTTCEE
T ss_pred             cEEEeeeeeeee
Confidence            999999998764

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.75  E-value=2.1e-19  Score=173.31  Aligned_cols=145  Identities=23%  Similarity=0.268  Sum_probs=114.8

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      ++..++...+++|...+.||+|+||.||+|+.++++.||+|++........+.+.+|+++++.++||||+++++++...+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  108 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN  108 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            44445556778999999999999999999998889999999987766566788999999999999999999999886533


Q ss_pred             cceeeeeecccCC-Ccccccccc--------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          431 FTVCLCLFHHSSA-SASASLVSS--------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       431 ~~~~~~l~~~~~~-~~~~~l~~~--------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                        ..+++++++.+ .+.+.+...        +.....++.|+++||+|||+      +++|.||+++.++.++++|||++
T Consensus       109 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  186 (321)
T 2qkw_B          109 --EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS  186 (321)
T ss_dssp             --CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTC
T ss_pred             --eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccc
Confidence              34556777754 444433221        12233456899999998876      89999999999999999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       187 ~~  188 (321)
T 2qkw_B          187 KK  188 (321)
T ss_dssp             EE
T ss_pred             cc
Confidence            63

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.75  E-value=1e-18  Score=169.12  Aligned_cols=140  Identities=15%  Similarity=0.163  Sum_probs=107.4

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccc-----
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF-----  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~-----  431 (499)
                      ..++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++...+.     
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   83 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE   83 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence            3567999999999999999999975 79999999997654 3456789999999999999999999998855321     


Q ss_pred             --------------------------------------------------ceeeeeecccCCCccc-ccccccc------
Q 010856          432 --------------------------------------------------TVCLCLFHHSSASASA-SLVSSLT------  454 (499)
Q Consensus       432 --------------------------------------------------~~~~~l~~~~~~~~~~-~l~~~~~------  454 (499)
                                                                        ...++++|++.|+.+. .+.....      
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  163 (332)
T 3qd2_B           84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH  163 (332)
T ss_dssp             HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred             hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence                                                              1145567777654333 3222111      


Q ss_pred             -ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          455 -LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       455 -~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                       ....++.|++.||+|||+      ++||.||+++.++.++++|||++...
T Consensus       164 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  214 (332)
T 3qd2_B          164 GVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAM  214 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCccccc
Confidence             123456899999998876      89999999999999999999987643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=3.2e-18  Score=151.83  Aligned_cols=130  Identities=30%  Similarity=0.410  Sum_probs=91.2

Q ss_pred             CeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCc
Q 010856          130 RIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR  209 (499)
Q Consensus       130 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  209 (499)
                      +.+++++|+++.+|..+.  ++|++|++++|.++. +|..|.++++|+.|++++|.|++..+..|.++++|++|+|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456666666666665432  466677777776663 44566667777777777777776666667777777777777777


Q ss_pred             CCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccC
Q 010856          210 LQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       210 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  262 (499)
                      ++++.+..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|++.+..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            77777777777777777777777777666667777777888887777776543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.74  E-value=4.2e-20  Score=193.66  Aligned_cols=179  Identities=12%  Similarity=0.035  Sum_probs=105.1

Q ss_pred             CcccccEEeeecCCCCCcC-CccccCCccCCeeeccccCCCC--CCccccCCCCCcEEEcCC---------CcCCCCCcc
Q 010856          101 HLAELYRLDLDGNKLSGSL-PACFSNLTSLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSS---------NFLTSPLPL  168 (499)
Q Consensus       101 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~---------n~l~~~~~~  168 (499)
                      .+++|++|++++|.+++.. ...+..+++|+.|++++| ++.  ++.....+++|++|++.+         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            5678899999888866432 223457788888888887 432  222233477888887733         344332222


Q ss_pred             cc-cCCCCccEEEccCCcccccCccccc-CCcCCceeeCc--C----CcCCCCCC-----ccccCCCCCCEEeCCCCcCC
Q 010856          169 EI-GNLKVLIGIDFSMNNFSGVIPTEIG-GLKNLEYLFLG--Y----NRLQGSIP-----DSFGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       169 ~~-~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~~-----~~l~~l~~L~~L~l~~N~l~  235 (499)
                      .+ ..+++|+.|.++.|.+++.....+. .+++|++|+++  +    +.+++...     ..+..+++|+.|++++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            22 2367777777777777655444443 46777777777  3    44542211     1245566777777765 555


Q ss_pred             ccCcccccC-CCCCCEEEccCCcCcccCCCC--CCCCCccccccCCCcC
Q 010856          236 GAIPASLEK-LSYLENLNLSFNKLEGEIPRG--GSFGNFSAESFEGNEL  281 (499)
Q Consensus       236 ~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~--~~~~~l~~~~l~~N~~  281 (499)
                      +..+..+.. +++|+.|++++|.+++.....  ..+++++.+++.+|+.
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            444444443 667777777777765432211  1256667777776664

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.74  E-value=9.6e-19  Score=166.66  Aligned_cols=136  Identities=17%  Similarity=0.191  Sum_probs=109.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..+|...+.||+|+||+||+|+. .+++.||+|++........+.+.+|+.++++++||||+++++++...+  ..++++
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   96 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVM   96 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECC--EEEEEE
Confidence            45799999999999999999995 579999999998766566778999999999999999999999987643  445677


Q ss_pred             cccCCCcccc-ccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASAS-LVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~-l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |++.|+.+.. +..   .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        97 e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (297)
T 3fxz_A           97 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  165 (297)
T ss_dssp             ECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             ECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCcee
Confidence            7775544333 221   222344556899999998876      8999999999999999999998754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.74  E-value=1.4e-16  Score=157.55  Aligned_cols=237  Identities=12%  Similarity=0.071  Sum_probs=186.8

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      .++.+.+.+ .++.+...+|.++ +|+.+.+..| ++.+...+|.++ +|+.+.+.. .++.+...+|.++++|+.+++.
T Consensus       114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred             CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence            788888765 4666778888885 7999998876 777778888884 699999986 6776777889999999999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCC-ccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccC
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI  190 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (499)
                      +|.++.+....|. ..+|+.+.+..+ ++.++ ..|.++++|+.+++..| ++.+....|.+ .+|+.+.+ .+.++.+.
T Consensus       189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~  263 (401)
T 4fdw_A          189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA  263 (401)
T ss_dssp             TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred             CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence            9999987777887 589999999854 77654 46778899999999875 66677777877 78999999 45577777


Q ss_pred             cccccCCcCCceeeCcCCcCC-----CCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC
Q 010856          191 PTEIGGLKNLEYLFLGYNRLQ-----GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG  265 (499)
Q Consensus       191 ~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  265 (499)
                      ...|.++++|+.+++.+|.+.     .+....|.++++|+.+++. +.++.+...+|.++++|+.+++..| ++...+..
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            888999999999999888765     4667889999999999998 4588788889999999999999655 65443333


Q ss_pred             CCCCCccccccCCCc
Q 010856          266 GSFGNFSAESFEGNE  280 (499)
Q Consensus       266 ~~~~~l~~~~l~~N~  280 (499)
                      -.-..+..+.+.+|.
T Consensus       342 F~~~~L~~l~l~~n~  356 (401)
T 4fdw_A          342 FNNTGIKEVKVEGTT  356 (401)
T ss_dssp             SSSSCCCEEEECCSS
T ss_pred             CCCCCCCEEEEcCCC
Confidence            222267778887775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=8.6e-18  Score=145.76  Aligned_cols=132  Identities=23%  Similarity=0.269  Sum_probs=94.1

Q ss_pred             ccccEEEcccCCCc-ccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEe
Q 010856           31 HSLEDFRMYNCNIS-GGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLD  109 (499)
Q Consensus        31 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  109 (499)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            36777777777776 45566667777777777777777754  5667777777777777777765666666677777777


Q ss_pred             eecCCCCCcCC-ccccCCccCCeeeccccCCCCCCc----cccCCCCCcEEEcCCCcCCC
Q 010856          110 LDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTSVPL----TFWNLKDILNLNFSSNFLTS  164 (499)
Q Consensus       110 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~~  164 (499)
                      +++|.+++... ..+..+++|+.|++++|.++.++.    .+..+++|++|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            77777775432 567777777777777777777665    56677777777777777654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.74  E-value=5.8e-19  Score=169.36  Aligned_cols=137  Identities=15%  Similarity=0.195  Sum_probs=109.1

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..++|...+.||+|+||+||+|+..+|+.||+|++....  ....+.+.+|++++++++||||+++++++...+  ..++
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~l   96 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSER--CLTL   96 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS--CEEE
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC--EEEE
Confidence            346799999999999999999998889999999996543  233567899999999999999999999987633  4456


Q ss_pred             eecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.+++...+...     ......++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus        97 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~  168 (311)
T 3niz_A           97 VFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARA  168 (311)
T ss_dssp             EEECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCcee
Confidence            7888887765544322     22234456899999998876      8999999999999999999998865

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.74  E-value=2.4e-19  Score=179.33  Aligned_cols=144  Identities=13%  Similarity=0.076  Sum_probs=111.6

Q ss_pred             CHHHHHHHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEE
Q 010856          352 SYLELFRATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVA  427 (499)
Q Consensus       352 ~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~  427 (499)
                      .+.++....++|...++||+|+||+||+|+.+ +++.||+|++++..   ....+.+.+|+.++..++||||++++++|.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            34555666789999999999999999999975 58899999997532   223345889999999999999999999987


Q ss_pred             ccccceeeeeecccC-CCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          428 VITFTVCLCLFHHSS-ASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~-~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ..+  ..++++||+. |++...+..     .+...+.++.|++.||+|||+      ++||.||+++.++.++++|||++
T Consensus       145 ~~~--~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla  222 (437)
T 4aw2_A          145 DDN--NLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSC  222 (437)
T ss_dssp             CSS--EEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             eCC--EEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence            743  4456777774 454444432     122234456888999988765      89999999999999999999988


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      +.
T Consensus       223 ~~  224 (437)
T 4aw2_A          223 LK  224 (437)
T ss_dssp             EE
T ss_pred             hh
Confidence            64

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.74  E-value=1.9e-18  Score=164.78  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=105.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--------------------------ccHHHHHHHHHHHh
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--------------------------RAFESFDVECEMMK  412 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~il~  412 (499)
                      .++|...+.||+|+||.||+|+. .+++.||+|++.....                          ...+.+.+|+++++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            46799999999999999999996 5789999999975431                          11356899999999


Q ss_pred             cCCCCCccccceeEEccccceeeeeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEe
Q 010856          413 NIRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       413 ~l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      +++||||+++++++........++++|++.++....+...    +.....++.|+++||+|||+      +++|.||+++
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~  171 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVG  171 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEC
Confidence            9999999999999876434455667888866554443222    22234446899999998876      8999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||++..
T Consensus       172 ~~~~~kl~Dfg~~~~  186 (298)
T 2zv2_A          172 EDGHIKIADFGVSNE  186 (298)
T ss_dssp             TTSCEEECCCTTCEE
T ss_pred             CCCCEEEecCCCccc
Confidence            999999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=6.2e-20  Score=192.38  Aligned_cols=275  Identities=14%  Similarity=0.094  Sum_probs=180.2

Q ss_pred             CCCCCCEEECcCCCCCccCChhccc-cccccccEEEcccC-CCccc-CCccccCCCCCCEEeccCCcCCccCCccc----
Q 010856            3 NCKSLTLIYLSNNPLDGILPKTSVG-NLSHSLEDFRMYNC-NISGG-IPEEISNLTNSTIVNLGGNKLNGSIPITL----   75 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----   75 (499)
                      .+++|++|+|++|.+++..+. .+. .++ +|++|++++| .++.. .+..+.++++|++|+|++|.+++..+..+    
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~-~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLE-LIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHH-HHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcEEcHHHHH-HHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            467899999999888766554 333 566 8999999888 55432 33344578888888888888775444333    


Q ss_pred             cCCCCCCeEeccccc--cccc-CCccccCcccccEEeeecCC--------------------------------------
Q 010856           76 SKLQKLQGLGLEDNK--LEGS-IPDDICHLAELYRLDLDGNK--------------------------------------  114 (499)
Q Consensus        76 ~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~--------------------------------------  114 (499)
                      ..+++|++|++++|.  +... ....+..+++|++|++++|.                                      
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            356688888888876  2211 11112345777777777661                                      


Q ss_pred             ------------CCCc----CCccccCCccCCeeeccccCCCC--CCccccCCCCCcEEEcCCCcCCCC-CcccccCCCC
Q 010856          115 ------------LSGS----LPACFSNLTSLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSP-LPLEIGNLKV  175 (499)
Q Consensus       115 ------------l~~~----~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~  175 (499)
                                  +...    .+..+..+++|+.|++++|.++.  +...+..+++|++|++++| +++. .+.....+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence                        1111    11122256899999999999775  3334668899999999988 4321 1222235789


Q ss_pred             ccEEEccC---------CcccccCcccc-cCCcCCceeeCcCCcCCCCCCcccc-CCCCCCEEeCC--C----CcCCccC
Q 010856          176 LIGIDFSM---------NNFSGVIPTEI-GGLKNLEYLFLGYNRLQGSIPDSFG-DLISLKFLNLS--N----NNLSGAI  238 (499)
Q Consensus       176 L~~L~l~~---------n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~--~----N~l~~~~  238 (499)
                      |+.|++++         +.+++.....+ .++++|++|.++.|.+++.....+. .+++|+.|+++  +    |.+++..
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            99999843         45554333333 3489999999999998865555554 58999999999  4    5666322


Q ss_pred             -----cccccCCCCCCEEEccCCcCcccCCCC-C-CCCCccccccCCCcC
Q 010856          239 -----PASLEKLSYLENLNLSFNKLEGEIPRG-G-SFGNFSAESFEGNEL  281 (499)
Q Consensus       239 -----~~~~~~l~~L~~L~l~~N~l~~~~~~~-~-~~~~l~~~~l~~N~~  281 (499)
                           +..+..+++|+.|++++ .+++..+.. . ..++++.+++.+|..
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i  468 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD  468 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC
Confidence                 22367789999999987 565432211 1 256788899988763

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.73  E-value=1.1e-18  Score=165.95  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|+..+.||+|+||+||+|+. .+++.||+|++....  ....+.+.+|++++++++||||+++++++...  ...+++
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~lv   79 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD--KKLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET--TEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC--CEEEEE
Confidence            4689999999999999999996 468999999997654  23357789999999999999999999998763  345668


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|++.+++...+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        80 ~e~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~  150 (292)
T 3o0g_A           80 FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARA  150 (292)
T ss_dssp             EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccee
Confidence            88888876554432     222344556899999998876      8999999999999999999999864

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.73  E-value=1.1e-18  Score=167.95  Aligned_cols=137  Identities=16%  Similarity=0.215  Sum_probs=95.8

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..++|+..+.||+|+||.||+|+. .+|+.||+|+++... ....+.+.+|++++++++||||+++++++...+  ..++
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~l   80 (317)
T 2pmi_A            3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTEN--KLTL   80 (317)
T ss_dssp             ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTT--EEEE
T ss_pred             cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECC--eEEE
Confidence            346799999999999999999996 469999999997654 334577899999999999999999999987633  4556


Q ss_pred             eecccCCCcccccccc----------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVSS----------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~----------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.|++.+.+...          ......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        81 v~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~  157 (317)
T 2pmi_A           81 VFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARA  157 (317)
T ss_dssp             EEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred             EEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence            7888887765544321          12233345799999998876      8999999999999999999999864

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.73  E-value=7e-19  Score=170.01  Aligned_cols=150  Identities=31%  Similarity=0.360  Sum_probs=116.9

Q ss_pred             cccccCHHHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCcccccee
Q 010856          347 TWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHG  425 (499)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~  425 (499)
                      ....++.+++....++|...+.||+|+||.||+|+..+|+.||+|++.... ......+.+|+++++.++||||++++++
T Consensus        16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~   95 (326)
T 3uim_A           16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF   95 (326)
T ss_dssp             CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred             ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence            456789999999999999999999999999999998789999999997654 2233478999999999999999999999


Q ss_pred             EEccccceeeeeecccCC-Ccccccccc--------ccccccccccccccceeecc---------CCCcccEEEeeCCCe
Q 010856          426 VAVITFTVCLCLFHHSSA-SASASLVSS--------LTLSRPAKGGGFRGCVLWHV---------GVDFAAFVFVLEPGV  487 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~-~~~~~l~~~--------~~~~~~~~~~i~~gl~yLH~---------~~~p~~~l~~~~~~~  487 (499)
                      +...+  ..+++++++.+ ++.+.+...        +.....++.|++.||+|||+         +++|.||+++.++.+
T Consensus        96 ~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~  173 (326)
T 3uim_A           96 CMTPT--ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEA  173 (326)
T ss_dssp             ECCSS--CCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCE
T ss_pred             EecCC--ceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCE
Confidence            87643  33456777755 443333221        12234456888888877765         689999999999999


Q ss_pred             EEEEEEEeecc
Q 010856          488 EVICFVFEILL  498 (499)
Q Consensus       488 ~~~~f~~~~~~  498 (499)
                      +++|||++...
T Consensus       174 kl~Dfg~~~~~  184 (326)
T 3uim_A          174 VVGDFGLAKLM  184 (326)
T ss_dssp             EECCCSSCEEC
T ss_pred             EeccCcccccc
Confidence            99999998653

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.73  E-value=6.9e-19  Score=167.52  Aligned_cols=138  Identities=18%  Similarity=0.137  Sum_probs=108.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-----CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|+..+.||+|+||.||+|++     .+++.||+|++........+.+.+|++++++++||||+++++++...+....
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence            46789999999999999999984     3688999999976655556789999999999999999999999866443345


Q ss_pred             eeeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++++.+ ++.+.+...     +.....++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~  163 (295)
T 3ugc_A           89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV  163 (295)
T ss_dssp             EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred             EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCccccc
Confidence            567777754 544433221     12233456899999999876      8999999999999999999999865

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.73  E-value=6.1e-19  Score=170.24  Aligned_cols=138  Identities=18%  Similarity=0.206  Sum_probs=110.1

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ...++|...+.||+|+||.||+|+. .+|+.||+|++....  ....+.+.+|+++++.++||||+++++++...+  ..
T Consensus        12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~--~~   89 (328)
T 3fe3_A           12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEK--TL   89 (328)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EE
T ss_pred             CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--EE
Confidence            4467899999999999999999996 689999999997653  234567889999999999999999999987633  45


Q ss_pred             eeeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.| ++.+.+...    ......++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  163 (328)
T 3fe3_A           90 YLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNE  163 (328)
T ss_dssp             EEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGG
T ss_pred             EEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCcee
Confidence            567788754 444443322    22334556899999999876      8999999999999999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.73  E-value=8.4e-19  Score=177.67  Aligned_cols=139  Identities=17%  Similarity=0.166  Sum_probs=103.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc---cce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT---FTV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---~~~  433 (499)
                      .++|...+.||+|+||+||+|+. .+++.||||++....  ....+++.+|++++++++|||||++++++...+   ...
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            36799999999999999999995 479999999996543  234577899999999999999999999985432   234


Q ss_pred             eeeeecccCCCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++++|++++++...+....    ...+.++.||+.||+|||+      ++||.|||++.++.++++|||+++..
T Consensus       132 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  206 (458)
T 3rp9_A          132 LYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTV  206 (458)
T ss_dssp             EEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred             EEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence            56678888887666554332    2244456899999999876      89999999999999999999998753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=1.4e-17  Score=144.42  Aligned_cols=133  Identities=23%  Similarity=0.222  Sum_probs=68.2

Q ss_pred             CCCCEEeccCCcCC-ccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeee
Q 010856           55 TNSTIVNLGGNKLN-GSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVS  133 (499)
Q Consensus        55 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  133 (499)
                      ++|++|++++|.++ +..|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554 33344445555555555555555433  3444455555555555555443444444444444444


Q ss_pred             ccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCc---ccccCCcCCceeeCcCCcC
Q 010856          134 LGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIP---TEIGGLKNLEYLFLGYNRL  210 (499)
Q Consensus       134 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l  210 (499)
                      +++|+++.++                      .+..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       102 Ls~N~l~~~~----------------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDIS----------------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSG----------------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcch----------------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            4444444433                      11445555555666666665554433   3556666666666666665


Q ss_pred             C
Q 010856          211 Q  211 (499)
Q Consensus       211 ~  211 (499)
                      .
T Consensus       160 ~  160 (168)
T 2ell_A          160 Q  160 (168)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.73  E-value=1e-18  Score=168.99  Aligned_cols=136  Identities=16%  Similarity=0.162  Sum_probs=111.3

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|.+.+.||+|+||+||+|+. .+++.||+|++....   ....+.+.+|+++++.++||||+++++++...+  ..+
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~--~~~   85 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPT--DIV   85 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEE
Confidence            46899999999999999999996 679999999997542   233467899999999999999999999987743  455


Q ss_pred             eeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++||++|++.+.+...    +.....++.|++.||+|||+      +++|.||++++++.++++|||++..
T Consensus        86 lv~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~  157 (336)
T 3h4j_B           86 MVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNI  157 (336)
T ss_dssp             EEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBT
T ss_pred             EEEECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEecccee
Confidence            67888888776655432    22344556899999999876      8999999999999999999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=9.4e-19  Score=186.33  Aligned_cols=220  Identities=22%  Similarity=0.191  Sum_probs=124.4

Q ss_pred             CCCCEEECcCCCCCccCChhcccccc---ccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCC
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLS---HSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKL   81 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   81 (499)
                      +.++.|+|.+|.+...... .+..+.   .++..+++..|.+. ..++.|..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            4578899999988764222 111110   01222333334444 56888999999999999999998 556666699999


Q ss_pred             CeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCc
Q 010856           82 QGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNF  161 (499)
Q Consensus        82 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  161 (499)
                      ++|+|++|.|+ .+|..|..+++|++|+|++|.++ .+|..|..+++|++|+|++|.|+.+|..+..+++|+.|+|++|.
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            99999999999 77889999999999999999999 66888999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCC-ccEEEccCCcccccCcccccCCcCCceeeCcCC--------cCCCCCCccccCCCCCCEEeCCCC
Q 010856          162 LTSPLPLEIGNLKV-LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN--------RLQGSIPDSFGDLISLKFLNLSNN  232 (499)
Q Consensus       162 l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~l~~N  232 (499)
                      +++.+|..+..+.. +..+++++|.+++..|.      .|+.|+++.|        .+.+..+..+..+..+....+++|
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N  401 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN  401 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence            99888777655432 23478999999877665      4556667766        344444445566667777788888


Q ss_pred             cCC
Q 010856          233 NLS  235 (499)
Q Consensus       233 ~l~  235 (499)
                      -+.
T Consensus       402 il~  404 (727)
T 4b8c_D          402 TLC  404 (727)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=4.5e-17  Score=142.49  Aligned_cols=133  Identities=26%  Similarity=0.271  Sum_probs=107.7

Q ss_pred             CCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCC
Q 010856          129 LRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN  208 (499)
Q Consensus       129 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  208 (499)
                      .+.+++++|+++.+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4567777777777775443  67888888888888776677788888888888888888777777888888899999988


Q ss_pred             cCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCC
Q 010856          209 RLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       209 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  263 (499)
                      .+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8887777778888899999999999887777777888899999999998887655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=4e-18  Score=164.83  Aligned_cols=223  Identities=16%  Similarity=0.118  Sum_probs=149.1

Q ss_pred             cccEEEcccCCCc--ccCCccccCCCCCCEEeccCCcCCccCCccccC--------CCCCCeEecccccccccCCccccC
Q 010856           32 SLEDFRMYNCNIS--GGIPEEISNLTNSTIVNLGGNKLNGSIPITLSK--------LQKLQGLGLEDNKLEGSIPDDICH  101 (499)
Q Consensus        32 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~  101 (499)
                      +|+.|+|++|++.  ...+..+   +.+..+.+..|.   +.+.+|.+        +++|+.|+|.+ .++.+.+.+|.+
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~  122 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG  122 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred             cCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence            5666666666665  2221111   123334444442   33456666        77777777777 666666667777


Q ss_pred             cccccEEeeecCCCCCcCCccccCCccCCeeeccccC----CCCC-CccccCCCCCc-EEEc------------------
Q 010856          102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNK----LTSV-PLTFWNLKDIL-NLNF------------------  157 (499)
Q Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~-~~~~~~l~~L~-~L~l------------------  157 (499)
                      +++|+.|++.+|.+..+.+.+|.++.++..+.+..+.    ...+ ...|.++..|+ .+.+                  
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR  202 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence            7777777777777776777777776666666655421    1111 12233444444 2322                  


Q ss_pred             -------CCCcCCCCCcccc-cCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCC-EEe
Q 010856          158 -------SSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLK-FLN  228 (499)
Q Consensus       158 -------~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~  228 (499)
                             .++- .......+ ..+++|+.+++++|+++.+.+..|.++++|++|++.+| ++.+.+..|.++++|+ .++
T Consensus       203 ~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          203 DINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             GCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence                   2221 00000001 13789999999999999888899999999999999998 8878888999999999 999


Q ss_pred             CCCCcCCccCcccccCCCCCCEEEccCCcCcccCCC
Q 010856          229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPR  264 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  264 (499)
                      +.+ .++.+.+.+|.++++|+.+++++|.++...+.
T Consensus       281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred             Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence            998 88888889999999999999999999865543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.72  E-value=2.7e-18  Score=164.65  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=108.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|...+.||+|+||+||+|+. .+++.||+|++........+.+.+|++++++++||||+++++++...+  ..++++
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   86 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK--RLNFIT   86 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCC--eeEEEE
Confidence            46789999999999999999996 469999999986655556678999999999999999999999987633  445577


Q ss_pred             cccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++ +.+.+..     .+.....++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  157 (310)
T 3s95_A           87 EYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARL  157 (310)
T ss_dssp             ECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEE
T ss_pred             EecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeeccccee
Confidence            777554 4333322     122234456899999998876      8999999999999999999998864

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.72  E-value=1.3e-18  Score=175.83  Aligned_cols=138  Identities=16%  Similarity=0.102  Sum_probs=110.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----cc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----FT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~~  432 (499)
                      .++|...+.||+|+||+||+|+. .+|+.||||++....  ....+++.+|+++++.++|||||++++++...+    ..
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            46799999999999999999995 578999999997643  234567899999999999999999999986532    23


Q ss_pred             eeeeeecccCCCcccccccc--ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVSS--LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++|++.+++...+...  +.....++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus       141 ~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~  213 (464)
T 3ttj_A          141 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  213 (464)
T ss_dssp             EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred             eEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence            45678899988866554322  22344556899999999876      8999999999999999999999864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.72  E-value=1.1e-18  Score=173.10  Aligned_cols=143  Identities=13%  Similarity=0.068  Sum_probs=111.4

Q ss_pred             HHHHHHHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEc
Q 010856          353 YLELFRATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAV  428 (499)
Q Consensus       353 ~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~  428 (499)
                      ..++....++|...+.||+|+||+||+|+.+ +++.||+|++++..   ....+.+.+|+++++.++|||||++++++..
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3445556788999999999999999999964 68999999997532   2334568899999999999999999999876


Q ss_pred             cccceeeeeecccCCC-ccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          429 ITFTVCLCLFHHSSAS-ASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~-~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+  ..++++||+.|+ +...+..   .+...+.++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus       141 ~~--~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~  217 (410)
T 3v8s_A          141 DR--YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK  217 (410)
T ss_dssp             SS--EEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CC--EEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence            33  445678888554 4333221   223344556899999998876      8999999999999999999999864

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.72  E-value=1e-18  Score=165.74  Aligned_cols=135  Identities=17%  Similarity=0.207  Sum_probs=108.8

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|...+.||+|+||.||+|+..+|+.||+|++....  ....+.+.+|++++++++||||+++++++...+  ..++++
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK--RLVLVF   79 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--CEEEEE
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCC--eEEEEE
Confidence            4688999999999999999998789999999996543  233477899999999999999999999987643  455678


Q ss_pred             cccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |++.+++...+...     ......++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  149 (288)
T 1ob3_A           80 EHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARA  149 (288)
T ss_dssp             ECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             EecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccc
Confidence            88887654443321     22234456899999999876      8999999999999999999998753

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.71  E-value=2e-18  Score=169.76  Aligned_cols=136  Identities=18%  Similarity=0.195  Sum_probs=101.6

Q ss_pred             hhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .+|...+.||+|+||.||+|+..    ++..||||+++... ....+.|.+|++++++++||||+++++++...+  ..+
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~  122 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK--PVM  122 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--SCE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--ceE
Confidence            57889999999999999999853    57789999997653 234567999999999999999999999987633  445


Q ss_pred             eeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++|++.+ .+.+.+...     +.....++.|+++||+|||+      +++|.||+++.++.++++|||+++..
T Consensus       123 lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  197 (373)
T 2qol_A          123 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVL  197 (373)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence            67788754 444333221     12234456899999998876      89999999999999999999998753

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.71  E-value=3.3e-18  Score=168.20  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=108.1

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||.||+|+. .+++.||+|++.+..   ....+.+.+|+++++.++|||||++++++...+  ..+
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~   91 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE--DMF   91 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEE
Confidence            46799999999999999999996 468999999997543   344678899999999999999999999887643  345


Q ss_pred             eeecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++++.|+ +...+...    ......++.|++.||+|||+      ++||.||+++.++.++++|||++..+
T Consensus        92 lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~  165 (384)
T 4fr4_A           92 MVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAML  165 (384)
T ss_dssp             EEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeec
Confidence            567777554 43333322    22334456899999998876      89999999999999999999998753

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.71  E-value=4e-18  Score=164.56  Aligned_cols=137  Identities=18%  Similarity=0.158  Sum_probs=106.3

Q ss_pred             hhhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|.+.+.||+|+||.||+|+..    .+..||||+++... ....+.+.+|++++++++||||+++++++...+  ..
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~  125 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR--LA  125 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGG--CC
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--cc
Confidence            356888999999999999999963    34569999997653 334567999999999999999999999986633  44


Q ss_pred             eeeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++|++.| ++.+.+...     ......++.|++.||+|||+      +++|.||+++.++.++++|||+++..
T Consensus       126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          126 MIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             EEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence            567787755 443333221     22234456899999998876      89999999999999999999998754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.71  E-value=2.3e-18  Score=170.51  Aligned_cols=140  Identities=15%  Similarity=0.103  Sum_probs=104.5

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCC-CCCccccceeEEccccce
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTV  433 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~  433 (499)
                      ...++|...+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|+.+++++. ||||+++++++...+...
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            3457899999999999999999995 579999999996542  234567889999999997 999999999987655545


Q ss_pred             eeeeecccCCCcccccccc---ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSASASASLVSS---LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~---~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+++++++.+++...+...   ......++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus        86 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  158 (388)
T 3oz6_A           86 VYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRS  158 (388)
T ss_dssp             EEEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence            6678899988765544321   12233446899999998876      8999999999999999999999864

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.71  E-value=3.9e-18  Score=165.13  Aligned_cols=136  Identities=15%  Similarity=0.141  Sum_probs=108.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||+||+|+. .+|+.||+|++++..   ....+.+.+|+++++.++||||+++++++...+  ..+
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~--~~~   81 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLC   81 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS--EEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCC--EEE
Confidence            46799999999999999999996 479999999997642   344677899999999999999999999887643  445


Q ss_pred             eeecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++||+.|+ +...+...    +...+.++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        82 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~  154 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhh
Confidence            577777654 43333222    22334456899999999876      8999999999999999999998763

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.71  E-value=3.6e-18  Score=164.68  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=105.4

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|+..+.||+|+||+||+|+.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++...+  ..+++
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv   83 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYLF   83 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--eEEEE
Confidence            467999999999999999999964 79999999997554 233466889999999999999999999987633  34456


Q ss_pred             ecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|++.| ++.+.+...    +.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~  154 (323)
T 3tki_A           84 LEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATV  154 (323)
T ss_dssp             EECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccce
Confidence            777755 444444332    22344556899999998876      8999999999999999999998864

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.71  E-value=8.4e-18  Score=164.30  Aligned_cols=136  Identities=16%  Similarity=0.167  Sum_probs=107.1

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC------ccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG------RAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .+.|...+.||+|+||.||+|+. .+|+.||+|+++....      ...+.+.+|+.++++++||||+++++++...+  
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~--   88 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT--   88 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC--
Confidence            45699999999999999999996 4799999999976542      13578999999999999999999999987633  


Q ss_pred             eeeeeecccC-CCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC----CeEEEEEEEeec
Q 010856          433 VCLCLFHHSS-ASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP----GVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~-~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~----~~~~~~f~~~~~  497 (499)
                      ..++++|++. |++.+.+...    +.....++.|++.||+|||+      +++|.||++.+++    .++++|||++..
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           89 DVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             EEEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            4456777774 5554444322    22334456899999998876      8999999998776    699999999864

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.71  E-value=1.7e-18  Score=171.92  Aligned_cols=144  Identities=13%  Similarity=0.064  Sum_probs=112.1

Q ss_pred             CHHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEE
Q 010856          352 SYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVA  427 (499)
Q Consensus       352 ~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~  427 (499)
                      .+++.....++|...+.||+|+||+||+|+. .+|+.||+|++++..   ....+.+.+|+.++..++||||+++++++.
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            4455556678999999999999999999996 479999999997542   223455889999999999999999999887


Q ss_pred             ccccceeeeeecccC-CCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          428 VITFTVCLCLFHHSS-ASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~-~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ..+  ..++++||+. |++...+...     +...+.++.|++.||+|||+      ++||.||+++.++.++++|||++
T Consensus       132 ~~~--~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla  209 (412)
T 2vd5_A          132 DEN--YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSC  209 (412)
T ss_dssp             CSS--EEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             eCC--EEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhh
Confidence            643  4456777774 4544444321     22234456889999998865      89999999999999999999988


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       210 ~~  211 (412)
T 2vd5_A          210 LK  211 (412)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.71  E-value=2.9e-18  Score=165.12  Aligned_cols=138  Identities=16%  Similarity=0.115  Sum_probs=106.7

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.|.+.+.||+|+||+||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++...+....++++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            56899999999999999999964 69999999997644 34467789999999999999999999998765444455677


Q ss_pred             cccCC-Cccccccc-------cccccccccccccccceeecc------CCCcccEEE----eeCCCeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVS-------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF----VLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~-------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~----~~~~~~~~~~f~~~~~~  498 (499)
                      |++.+ ++...+..       .+.....++.|++.||+|||+      +++|.||++    +.++.++++|||+++..
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~  166 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL  166 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEEC
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceec
Confidence            88755 44333322       122234456899999998876      899999998    44456999999998653

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.71  E-value=5.6e-18  Score=162.78  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=108.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||+||+|+. .+|+.||+|++++..   ....+.+.+|+.+++.++||||+++++++...+  ..+
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~--~~~   82 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ--QIF   82 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS--EEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCC--EEE
Confidence            46799999999999999999996 479999999997643   244677889999999999999999999987633  445


Q ss_pred             eeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++.| ++...+...    +.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        83 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~  155 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKY  155 (318)
T ss_dssp             EEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred             EEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCccee
Confidence            67777755 444443322    22334456899999998876      8999999999999999999999864

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.70  E-value=3.1e-18  Score=168.27  Aligned_cols=136  Identities=19%  Similarity=0.199  Sum_probs=104.8

Q ss_pred             hhhcccccccccCCcceEEEEEe--------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL--------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      .++|...+.||+|+||.||+|+.        .++..||+|+++... ....+.+.+|+++++++ +||||+++++++...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            46799999999999999999984        235679999997654 23456799999999999 899999999998763


Q ss_pred             ccceeeeeecccCC-Cccccccccc--------------------cccccccccccccceeecc------CCCcccEEEe
Q 010856          430 TFTVCLCLFHHSSA-SASASLVSSL--------------------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~~~--------------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      +  ..++++||+.| ++.+.+....                    .....++.|+++||+|||+      ++||.||+++
T Consensus       160 ~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~  237 (370)
T 2psq_A          160 G--PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVT  237 (370)
T ss_dssp             S--SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC
T ss_pred             C--CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEEC
Confidence            3  34456777755 4444333211                    1123346899999999876      8999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||+++.
T Consensus       238 ~~~~~kl~DFG~a~~  252 (370)
T 2psq_A          238 ENNVMKIADFGLARD  252 (370)
T ss_dssp             TTCCEEECCCSSCEE
T ss_pred             CCCCEEEccccCCcc
Confidence            999999999999874

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.70  E-value=2.6e-18  Score=172.51  Aligned_cols=139  Identities=15%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc---ce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF---TV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~---~~  433 (499)
                      .++|...+.||+|+||.||+|+. .+++.||||++....  ....+.+.+|++++++++||||+++++++...+.   ..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            46799999999999999999996 468999999997543  2345779999999999999999999998866432   34


Q ss_pred             eeeeecccCCCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++++|++++++...+....    ...+.++.|+++||+|||+      ++||.||+++.++.++++|||+++..
T Consensus       105 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~  179 (432)
T 3n9x_A          105 LYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTI  179 (432)
T ss_dssp             EEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence            56678899887766554332    2344556899999999876      89999999999999999999998753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.2e-16  Score=141.62  Aligned_cols=127  Identities=24%  Similarity=0.303  Sum_probs=107.9

Q ss_pred             cEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCc
Q 010856          106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNN  185 (499)
Q Consensus       106 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  185 (499)
                      +.+++++|+++.+ |..+.  ++|+.|++++|+++.+|..+..+++|+.|++++|.|+++.+..|.++++|+.|+|++|+
T Consensus        13 ~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcC-CCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4677777777743 43332  57888888888888888888888899999999999988888889999999999999999


Q ss_pred             ccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCC
Q 010856          186 FSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       186 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~  235 (499)
                      +++..+..|.++++|++|+|++|+++...+..|..+++|+.|++++|++.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99888888999999999999999999777778999999999999999886

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.70  E-value=4.7e-18  Score=159.42  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=107.2

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|+..+.||+|+||.||+|+..+++.||+|++.... ...+++.+|++++++++||||+++++++...+  ..+++++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   85 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVFE   85 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SEEEEEE
T ss_pred             hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--ceEEEEE
Confidence            46789999999999999999998788899999997654 23567999999999999999999999987633  3456778


Q ss_pred             ccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++ +.+.+..     .......++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           86 FMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             CCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             eCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccc
Confidence            77655 3333322     122233446899999998876      8999999999999999999998764

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.70  E-value=4.4e-18  Score=166.94  Aligned_cols=146  Identities=10%  Similarity=0.089  Sum_probs=114.9

Q ss_pred             CHHHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCc-----------cHHHHHHHHHHHhcCCCCCcc
Q 010856          352 SYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-----------AFESFDVECEMMKNIRHRNLI  420 (499)
Q Consensus       352 ~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~il~~l~H~niv  420 (499)
                      ..+++....++|...+.||+|+||.||+|...+|+.||+|++......           ..+.+.+|++++++++||||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            456777888999999999999999999999878999999999543211           136799999999999999999


Q ss_pred             ccceeEEccc---cceeeeeecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCC
Q 010856          421 KILHGVAVIT---FTVCLCLFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG  486 (499)
Q Consensus       421 ~l~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~  486 (499)
                      ++++++...+   ....+++++++.|++...+...     ......++.|++.||+|||+      +++|.||+++.++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~  172 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNND  172 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCC
T ss_pred             ceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCC
Confidence            9999986532   2245668888888766655422     22234456899999999876      89999999999999


Q ss_pred             eEEEEEEEeec
Q 010856          487 VEVICFVFEIL  497 (499)
Q Consensus       487 ~~~~~f~~~~~  497 (499)
                      ++++|||++..
T Consensus       173 ~kl~Dfg~~~~  183 (362)
T 3pg1_A          173 ITICDFNLARE  183 (362)
T ss_dssp             EEECCTTC---
T ss_pred             EEEEecCcccc
Confidence            99999998853

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.70  E-value=2.5e-18  Score=169.56  Aligned_cols=138  Identities=16%  Similarity=0.180  Sum_probs=108.2

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ...++|...+.||+|+||.||+|+.. +++.||||+++.... ...++|.+|++++++++||||+++++++...+  ..+
T Consensus       111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~  188 (377)
T 3cbl_A          111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ--PIY  188 (377)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSS--SCE
T ss_pred             EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCC--CcE
Confidence            44567999999999999999999975 789999999975432 23456889999999999999999999987633  345


Q ss_pred             eeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++.+ ++.+.+...     ......++.|+++||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       189 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~  262 (377)
T 3cbl_A          189 IVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSRE  262 (377)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCcee
Confidence            67777754 444443321     22234456899999998866      8999999999999999999998764

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.70  E-value=5.4e-18  Score=162.35  Aligned_cols=140  Identities=21%  Similarity=0.180  Sum_probs=104.4

Q ss_pred             HHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          355 ELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       355 ~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      ++....++|...+.||+|+||.||+|+. +|+.||+|++....  ....+.+.+|++++++++||||+++++++...+  
T Consensus        31 ~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--  107 (309)
T 3p86_A           31 DMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP--  107 (309)
T ss_dssp             -CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT--
T ss_pred             cccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--
Confidence            3344567899999999999999999987 67899999997654  233567899999999999999999999987643  


Q ss_pred             eeeeeecccCC-Ccccccccc-------ccccccccccccccceeecc--------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          433 VCLCLFHHSSA-SASASLVSS-------LTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~~-------~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ..+++++++.+ ++.+.+...       +.....++.|++.||+|||+        +++|.||+++.++.++++|||+++
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~  187 (309)
T 3p86_A          108 NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR  187 (309)
T ss_dssp             CCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred             ceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence            34557777755 443333321       12233456889999987765        679999999999999999999986


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       188 ~  188 (309)
T 3p86_A          188 L  188 (309)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.70  E-value=9.4e-18  Score=160.58  Aligned_cols=148  Identities=24%  Similarity=0.321  Sum_probs=116.2

Q ss_pred             cccccCHHHHHHHhhhcccc------cccccCCcceEEEEEeCCCCEEEEEEeeccC----CccHHHHHHHHHHHhcCCC
Q 010856          347 TWRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRH  416 (499)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l~H  416 (499)
                      ....|++.++..++.+|...      +.||+|+||.||+|.. +++.||+|++....    ....+.+.+|++++++++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            34678999999999998877      8899999999999987 67899999996532    2345779999999999999


Q ss_pred             CCccccceeEEccccceeeeeecccCC-Cccccccc-------cccccccccccccccceeecc------CCCcccEEEe
Q 010856          417 RNLIKILHGVAVITFTVCLCLFHHSSA-SASASLVS-------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       417 ~niv~l~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~-------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      |||+++++++...+  ..+++++++.+ .+.+.+..       .+.....++.|++.||+|||+      +++|.||+++
T Consensus        90 ~~i~~~~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~  167 (307)
T 2nru_A           90 ENLVELLGFSSDGD--DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLD  167 (307)
T ss_dssp             TTBCCEEEEECSSS--SCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC
T ss_pred             CCeEEEEEEEecCC--ceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEc
Confidence            99999999887633  34456777744 44333321       122233456889999998866      8999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||+++.
T Consensus       168 ~~~~~kl~Dfg~~~~  182 (307)
T 2nru_A          168 EAFTAKISDFGLARA  182 (307)
T ss_dssp             TTCCEEECCCTTCEE
T ss_pred             CCCcEEEeecccccc
Confidence            999999999998764

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.69  E-value=6.6e-18  Score=164.45  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=108.4

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||.||+|+. .+|+.||+|++.+..   ....+.+.+|+++++.++||||+++++++...+  ..+
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~  117 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS--NLY  117 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC--EEE
Confidence            46799999999999999999996 479999999997643   344678899999999999999999999887633  445


Q ss_pred             eeecccC-CCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSS-ASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~-~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++. |++...+..    .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       118 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~  190 (350)
T 1rdq_E          118 MVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR  190 (350)
T ss_dssp             EEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEccccccee
Confidence            6777775 454444432    222344456899999998876      8999999999999999999999864

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.69  E-value=5.5e-18  Score=165.39  Aligned_cols=137  Identities=18%  Similarity=0.226  Sum_probs=106.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .+.|...+.||+|+||+||+|+. .+|+.||+|+++...     ....+.+.+|+++++.++||||+++++++...+  .
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~  100 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG--M  100 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--E
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--E
Confidence            35799999999999999999996 479999999996532     224678999999999999999999999987633  4


Q ss_pred             eeeeecccCCC-ccccccc--------cccccccccccccccceeecc------CCCcccEEEeeCCC---eEEEEEEEe
Q 010856          434 CLCLFHHSSAS-ASASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG---VEVICFVFE  495 (499)
Q Consensus       434 ~~~l~~~~~~~-~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~---~~~~~f~~~  495 (499)
                      .++++|++.|+ +...+..        .+.....++.|++.||+|||+      ++||.||+++.++.   ++++|||++
T Consensus       101 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a  180 (351)
T 3c0i_A          101 LYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA  180 (351)
T ss_dssp             EEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred             EEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence            45677777654 4333321        222334456899999999876      89999999987654   999999998


Q ss_pred             ecc
Q 010856          496 ILL  498 (499)
Q Consensus       496 ~~~  498 (499)
                      +..
T Consensus       181 ~~~  183 (351)
T 3c0i_A          181 IQL  183 (351)
T ss_dssp             EEC
T ss_pred             eEe
Confidence            653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.69  E-value=7.8e-18  Score=169.87  Aligned_cols=136  Identities=18%  Similarity=0.100  Sum_probs=107.6

Q ss_pred             HHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ...++|...+.||+|+||.||+|.. .|+.||||+++...  ..+.|.+|++++++++|||||++++++...+. ..+++
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~iv  265 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIV  265 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTS-CEEEE
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCC-ceEEE
Confidence            3457789999999999999999998 47799999997643  45789999999999999999999999876433 34456


Q ss_pred             ecccCC-Ccccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|++.+ ++.+.+...      ......++.|+++||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       266 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  338 (450)
T 1k9a_A          266 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  338 (450)
T ss_dssp             EECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccc
Confidence            777754 554444322      12234456899999998866      8999999999999999999998764

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.69  E-value=5.2e-18  Score=165.22  Aligned_cols=135  Identities=21%  Similarity=0.215  Sum_probs=108.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..|...+.||+|+||.||+|+. .+|+.||||++.....   ...+.+.+|++++++++||||+++++++...+  ..++
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l  131 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWL  131 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--eEEE
Confidence            4588899999999999999995 5799999999976542   23467899999999999999999999987633  4556


Q ss_pred             eecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.|++.+.+..     .+.....++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus       132 v~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  203 (348)
T 1u5q_A          132 VMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASI  203 (348)
T ss_dssp             EEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred             EEecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCcee
Confidence            788888776554421     122234456899999999876      8999999999999999999998764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=4.1e-17  Score=138.43  Aligned_cols=125  Identities=20%  Similarity=0.154  Sum_probs=56.9

Q ss_pred             cCCeeeccccCCC--CCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeC
Q 010856          128 SLRIVSLGSNKLT--SVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL  205 (499)
Q Consensus       128 ~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  205 (499)
                      +|+.|++++|.++  .+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3334444444433  2333333444444444444444432  33444444444444444444434444444555555555


Q ss_pred             cCCcCCCC-CCccccCCCCCCEEeCCCCcCCccCc---ccccCCCCCCEEEcc
Q 010856          206 GYNRLQGS-IPDSFGDLISLKFLNLSNNNLSGAIP---ASLEKLSYLENLNLS  254 (499)
Q Consensus       206 ~~n~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~  254 (499)
                      ++|++++. .+..+..+++|+.|++++|++++..+   ..+..+++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555432 12445555555555555555554433   345555555555544

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.69  E-value=7.8e-18  Score=170.16  Aligned_cols=138  Identities=19%  Similarity=0.192  Sum_probs=109.7

Q ss_pred             HHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ....++|...+.||+|+||+||+|...++..||||+++... ...+.|.+|++++++++|||||++++++..  . ..++
T Consensus       184 ~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~--~-~~~l  259 (454)
T 1qcf_A          184 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK--E-PIYI  259 (454)
T ss_dssp             BCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECS--S-SCEE
T ss_pred             eechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeC--C-ccEE
Confidence            34557799999999999999999998888899999997654 346789999999999999999999998753  2 3445


Q ss_pred             eecccCC-Ccccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++|++.+ ++.+.+...      ......++.|++.||+|||+      +++|.||+++.++.++++|||+++..
T Consensus       260 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  334 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVI  334 (454)
T ss_dssp             EECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGB
T ss_pred             EEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEc
Confidence            6777754 554444321      11233456899999999876      89999999999999999999998753

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.69  E-value=1e-17  Score=159.93  Aligned_cols=137  Identities=18%  Similarity=0.133  Sum_probs=104.3

Q ss_pred             hhcccccccccCCcceEEEEEe-----CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..|+..+.||+|+||.||+|++     .+++.||+|++.... ....+.+.+|++++++++||||+++++++...+....
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            4588899999999999999983     368899999997544 3446789999999999999999999999877543445


Q ss_pred             eeeecccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++++.+ ++.+.+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKA  175 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECccccccc
Confidence            567777755 44333321     122234456899999998876      8999999999999999999998764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=4.6e-17  Score=138.14  Aligned_cols=130  Identities=21%  Similarity=0.216  Sum_probs=112.4

Q ss_pred             CcccccEEeeecCCCC-CcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEE
Q 010856          101 HLAELYRLDLDGNKLS-GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI  179 (499)
Q Consensus       101 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  179 (499)
                      ..++|+.|++++|.++ +..|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4578999999999998 67777888999999999999999988 678889999999999999998778888889999999


Q ss_pred             EccCCccccc-CcccccCCcCCceeeCcCCcCCCCCC---ccccCCCCCCEEeCCC
Q 010856          180 DFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRLQGSIP---DSFGDLISLKFLNLSN  231 (499)
Q Consensus       180 ~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~  231 (499)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999874 34778899999999999999987766   5788899999998864

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.69  E-value=1.9e-18  Score=169.22  Aligned_cols=147  Identities=16%  Similarity=0.135  Sum_probs=111.4

Q ss_pred             ccCHHHHHHHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcC-CCCCccc
Q 010856          350 TFSYLELFRATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNI-RHRNLIK  421 (499)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l-~H~niv~  421 (499)
                      .+....+....++|...+.||+|+||.||+|+.      .+++.||||+++.... ...+.+.+|+++++++ +||||++
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence            455666777788999999999999999999973      3468999999976542 3356799999999999 8999999


Q ss_pred             cceeEEccccceeeeeecccCC-Ccccccccc------------------------------------------------
Q 010856          422 ILHGVAVITFTVCLCLFHHSSA-SASASLVSS------------------------------------------------  452 (499)
Q Consensus       422 l~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~------------------------------------------------  452 (499)
                      +++++...+.. .++++|++.| ++.+.+...                                                
T Consensus        91 ~~~~~~~~~~~-~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (359)
T 3vhe_A           91 LLGACTKPGGP-LMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVE  169 (359)
T ss_dssp             EEEEECSTTSC-CEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------
T ss_pred             eeeeeecCCCc-eEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccc
Confidence            99998764332 3456666654 433332211                                                


Q ss_pred             ----------------------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          453 ----------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       453 ----------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                                            +.....++.|+++||+|||+      ++||.||+++.++.++++|||++..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  242 (359)
T 3vhe_A          170 EKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARD  242 (359)
T ss_dssp             --------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSC
T ss_pred             ccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceee
Confidence                                  11122335789999999876      8999999999999999999998764

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.69  E-value=5.1e-18  Score=169.06  Aligned_cols=135  Identities=19%  Similarity=0.177  Sum_probs=101.2

Q ss_pred             hhccc-ccccccCCcceEEEEEeC---CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSE-NNLIGKGGFGSVYKARLG---DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~-~~~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      +.|.. .++||+|+||.||+|+.+   +++.||+|++....  ..+.+.+|++++++++|||||++++++...+....++
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l   97 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL   97 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence            34655 568999999999999954   57899999997543  2357889999999999999999999997644556677


Q ss_pred             eecccCCCcccccc-------------ccccccccccccccccceeecc------CCCcccEEE----eeCCCeEEEEEE
Q 010856          437 LFHHSSASASASLV-------------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF----VLEPGVEVICFV  493 (499)
Q Consensus       437 l~~~~~~~~~~~l~-------------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~----~~~~~~~~~~f~  493 (499)
                      +++|+.+++...+.             ..+.....++.|++.||+|||+      ++||.||++    ..++.++++|||
T Consensus        98 v~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg  177 (405)
T 3rgf_A           98 LFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMG  177 (405)
T ss_dssp             EEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTT
T ss_pred             EEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECC
Confidence            88998887655443             2222344556899999999876      899999999    566799999999


Q ss_pred             Eeec
Q 010856          494 FEIL  497 (499)
Q Consensus       494 ~~~~  497 (499)
                      +++.
T Consensus       178 ~a~~  181 (405)
T 3rgf_A          178 FARL  181 (405)
T ss_dssp             CCC-
T ss_pred             Ccee
Confidence            9864

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.69  E-value=8.5e-18  Score=159.85  Aligned_cols=135  Identities=14%  Similarity=0.168  Sum_probs=106.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|...+.||+|+||.||+|+. .+++.||+|++.....   ...+.+.+|++++++++||||+++++++...+  ..++
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~l   88 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDD--CYYL   88 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSS--EEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCC--eEEE
Confidence            5699999999999999999995 4789999999965432   23467899999999999999999999987633  4456


Q ss_pred             eecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.|+ +.+.+..    .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        89 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  160 (294)
T 4eqm_A           89 VMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKA  160 (294)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTT
T ss_pred             EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccc
Confidence            77777654 4333322    222334456899999998876      8999999999999999999998754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.69  E-value=5.9e-18  Score=164.96  Aligned_cols=138  Identities=16%  Similarity=0.138  Sum_probs=107.0

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFT  432 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~  432 (499)
                      ...++|...+.||+|+||+||+|+. .+|+.||+|++++..   ....+.+.+|+++++.+ +||||+++++++...+  
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~--   97 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD--   97 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC--
Confidence            3457899999999999999999996 468999999997642   23456788999999988 7999999999887643  


Q ss_pred             eeeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++||+.| ++...+..    .+...+.++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        98 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~  173 (353)
T 3txo_A           98 RLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKE  173 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceee
Confidence            34557777765 44333332    222344456899999999876      8999999999999999999998763

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.69  E-value=1.5e-17  Score=160.60  Aligned_cols=137  Identities=16%  Similarity=0.193  Sum_probs=107.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC------ccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG------RAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .+.|...+.||+|+||.||+|+. .+|+.||+|++.....      ...+.+.+|++++++++||||+++++++...+  
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--   87 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT--   87 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--
Confidence            35699999999999999999996 4699999999976532      13578999999999999999999999987633  


Q ss_pred             eeeeeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC----CeEEEEEEEeec
Q 010856          433 VCLCLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP----GVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~----~~~~~~f~~~~~  497 (499)
                      ..++++|++.| ++.+.+...    +.....++.|++.||+|||+      +++|.||++.+++    .++++|||++..
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~  167 (326)
T 2y0a_A           88 DVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  167 (326)
T ss_dssp             EEEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeE
Confidence            44556777754 444433322    22334456899999999876      8999999998776    799999998865


Q ss_pred             c
Q 010856          498 L  498 (499)
Q Consensus       498 ~  498 (499)
                      .
T Consensus       168 ~  168 (326)
T 2y0a_A          168 I  168 (326)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.69  E-value=1.5e-17  Score=168.12  Aligned_cols=137  Identities=17%  Similarity=0.179  Sum_probs=108.9

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|.+.+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+++++.++||||+++++++...+  ..+
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~--~~~   92 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS--DIF   92 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEE
Confidence            467999999999999999999964 79999999997543   233567899999999999999999999987643  445


Q ss_pred             eeecccC-CCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSS-ASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~-~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++|++. |++.+.+...    +.....++.|++.||+|||+      +++|.||+++.++.++++|||++...
T Consensus        93 lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~  166 (476)
T 2y94_A           93 MVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMM  166 (476)
T ss_dssp             EEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhc
Confidence            5777774 4544444322    22334456899999999876      89999999999999999999998653

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.69  E-value=8.4e-18  Score=162.49  Aligned_cols=138  Identities=16%  Similarity=0.086  Sum_probs=109.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-----CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|+..+.||+|+||.||+|++     .+++.||+|++........+.+.+|++++++++||||+++++++...+....
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence            35789999999999999999983     3688999999987655556779999999999999999999998876444555


Q ss_pred             eeeecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.++ +.+.+..     .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL  176 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred             EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEccccccee
Confidence            6678888554 4333322     222334456899999998876      8999999999999999999998864

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.68  E-value=9.1e-18  Score=163.92  Aligned_cols=138  Identities=16%  Similarity=0.191  Sum_probs=109.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc------
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT------  430 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~------  430 (499)
                      .++|...+.||+|+||.||+|+. .+|+.||+|++....  ......+.+|++++++++||||+++++++...+      
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            46899999999999999999996 579999999986544  233567889999999999999999999987632      


Q ss_pred             cceeeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FTVCLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ....++++|++.+++...+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        96 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  173 (351)
T 3mi9_A           96 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARA  173 (351)
T ss_dssp             -CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhccc
Confidence            123556788888765544332     222344556899999999876      8999999999999999999998764

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.68  E-value=7e-18  Score=167.45  Aligned_cols=138  Identities=16%  Similarity=0.115  Sum_probs=106.6

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.|.+.+.||+|+||+||+|+.. +|+.||+|++.... ....+.+.+|++++++++||||+++++++...+....++++
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            56899999999999999999964 69999999997544 34467788999999999999999999998765444455677


Q ss_pred             cccCC-Ccccccccc-------ccccccccccccccceeecc------CCCcccEEE----eeCCCeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVSS-------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVF----VLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~~-------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~----~~~~~~~~~~f~~~~~~  498 (499)
                      |++.| ++...+...       +.....++.|++.||+|||+      ++||.||++    +.++.++++|||+++.+
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~  166 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL  166 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEEC
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEc
Confidence            87755 443333321       22234456899999998876      899999998    44456999999998753

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.68  E-value=8.7e-18  Score=163.02  Aligned_cols=138  Identities=16%  Similarity=0.222  Sum_probs=103.9

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--------CccHHHHHHHHHHHhcCC---------CCCcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--------GRAFESFDVECEMMKNIR---------HRNLIKI  422 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~il~~l~---------H~niv~l  422 (499)
                      .++|...+.||+|+||+||+|+. +|+.||||++....        ....+.+.+|++++++++         |||||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            46799999999999999999998 78999999997653        123478899999998885         7777777


Q ss_pred             ceeEEcc----------------------------ccceeeeeecccCCC-ccccccc---cccccccccccccccceee
Q 010856          423 LHGVAVI----------------------------TFTVCLCLFHHSSAS-ASASLVS---SLTLSRPAKGGGFRGCVLW  470 (499)
Q Consensus       423 ~~~~~~~----------------------------~~~~~~~l~~~~~~~-~~~~l~~---~~~~~~~~~~~i~~gl~yL  470 (499)
                      .+++...                            +....++++||+.++ +.+.+..   .....+.++.|++.||+||
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~l  177 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVA  177 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            7654310                            123455677776544 5555432   2233455568999999999


Q ss_pred             c-c------CCCcccEEEeeCC--------------------CeEEEEEEEeecc
Q 010856          471 H-V------GVDFAAFVFVLEP--------------------GVEVICFVFEILL  498 (499)
Q Consensus       471 H-~------~~~p~~~l~~~~~--------------------~~~~~~f~~~~~~  498 (499)
                      | +      |+||.||+++.++                    .++++|||+++..
T Consensus       178 H~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~  232 (336)
T 2vuw_A          178 EASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLE  232 (336)
T ss_dssp             HHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEE
T ss_pred             HHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEec
Confidence            8 4      8999999999886                    8999999998753

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.68  E-value=1.4e-17  Score=162.23  Aligned_cols=140  Identities=17%  Similarity=0.213  Sum_probs=107.3

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCCCCCccccceeEEcc
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLIKILHGVAVI  429 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~  429 (499)
                      +....++|...+.||+|+||.||+|+. .+++.||+|++....     ....+.+.+|++++++++||||+++++++...
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            445667899999999999999999996 578999999997542     34467899999999999999999999998763


Q ss_pred             ccceeeeeecccCC-Cccccccc--------------------------------------------ccccccccccccc
Q 010856          430 TFTVCLCLFHHSSA-SASASLVS--------------------------------------------SLTLSRPAKGGGF  464 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~--------------------------------------------~~~~~~~~~~~i~  464 (499)
                      +  ...+++|++.| ++.+.+..                                            .+.....++.|++
T Consensus       101 ~--~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~  178 (345)
T 3hko_A          101 Q--YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIF  178 (345)
T ss_dssp             S--EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHH
T ss_pred             C--eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHH
Confidence            3  44556777754 44333321                                            1111233567999


Q ss_pred             ccceeecc------CCCcccEEEeeCC--CeEEEEEEEeec
Q 010856          465 RGCVLWHV------GVDFAAFVFVLEP--GVEVICFVFEIL  497 (499)
Q Consensus       465 ~gl~yLH~------~~~p~~~l~~~~~--~~~~~~f~~~~~  497 (499)
                      .||+|||+      +++|.||+++.++  .++++|||++..
T Consensus       179 ~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~  219 (345)
T 3hko_A          179 SALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKE  219 (345)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEE
T ss_pred             HHHHHHHHCCccccCCChhhEEEecCCCceEEEeecccccc
Confidence            99998876      8999999997665  899999998764

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.68  E-value=9.9e-18  Score=164.39  Aligned_cols=138  Identities=17%  Similarity=0.160  Sum_probs=98.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc----ccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI----TFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~----~~~  432 (499)
                      .++|...+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|+++++.++||||+++++++...    +..
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            46799999999999999999995 579999999996543  23456788999999999999999999998652    223


Q ss_pred             eeeeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++++++++++...+..   .......++.|+++||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       108 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~  181 (367)
T 2fst_X          108 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH  181 (367)
T ss_dssp             CCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred             eEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence            4566788887766554432   122234456899999999876      8999999999999999999999864

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.68  E-value=7.7e-18  Score=166.18  Aligned_cols=137  Identities=11%  Similarity=0.100  Sum_probs=106.2

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~  433 (499)
                      ...+|...+.||+|+||+||+|+.+ +++.||+|++++..   ....+.+.+|..++.++ +|||||++++++...+  .
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~--~  127 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--R  127 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSS--E
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECC--E
Confidence            3568999999999999999999964 68899999998653   23345688999999876 8999999999887633  4


Q ss_pred             eeeeecccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++++||+.|+ +...+..    .+...+.++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus       128 ~~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~  202 (396)
T 4dc2_A          128 LFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  202 (396)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             EEEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeee
Confidence            45677777654 4333332    223344556899999999876      8999999999999999999998763

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.68  E-value=1.4e-17  Score=156.05  Aligned_cols=136  Identities=17%  Similarity=0.108  Sum_probs=107.8

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..++|...+.||+|+||.||+|+..++..||+|++.... ...+++.+|++++++++||||+++++++....  ..++++
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   82 (268)
T 3sxs_A            6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY--PIYIVT   82 (268)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SEEEEE
T ss_pred             chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--ceEEEE
Confidence            346799999999999999999998888899999997654 23567999999999999999999999886532  345677


Q ss_pred             cccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++ +.+.+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~  153 (268)
T 3sxs_A           83 EYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRY  153 (268)
T ss_dssp             ECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEE
T ss_pred             EccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCcccee
Confidence            777555 4333322     222334456899999998876      8999999999999999999998864

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.68  E-value=1.1e-17  Score=171.56  Aligned_cols=138  Identities=10%  Similarity=0.098  Sum_probs=108.5

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..++|...+.||+|+||.||+|+. .+|+.||+|++.+..   ......+.+|+++++.++|||||++++++...+  ..
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~--~l  259 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD--AL  259 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EE
T ss_pred             cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCC--EE
Confidence            346799999999999999999996 479999999997643   334567899999999999999999999887643  45


Q ss_pred             eeeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++||+.| ++...+..      .+.....++.||+.||+|||+      ++||.||+++.++.++++|||++...
T Consensus       260 ~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~  336 (576)
T 2acx_A          260 CLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHV  336 (576)
T ss_dssp             EEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceec
Confidence            567787755 44333322      122234446899999998876      89999999999999999999998643

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.68  E-value=1.5e-17  Score=160.33  Aligned_cols=137  Identities=18%  Similarity=0.142  Sum_probs=104.9

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccc--ceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITF--TVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~--~~~~~  436 (499)
                      ...+|+..+.||+|+||+||+|+.. ++.||||++.... .....+.+|+.++++++||||+++++++.....  ...++
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l   99 (322)
T 3soc_A           22 QSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL   99 (322)
T ss_dssp             TTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             chhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence            3467999999999999999999874 7899999996543 234456779999999999999999999876432  23456


Q ss_pred             eecccCC-Cccccccc---cccccccccccccccceeecc----------------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          437 LFHHSSA-SASASLVS---SLTLSRPAKGGGFRGCVLWHV----------------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~----------------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++|++.+ ++.+.+..   .+.....++.|+++||+|||+                ++||.||+++.++.++++|||+++
T Consensus       100 v~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~  179 (322)
T 3soc_A          100 ITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL  179 (322)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCccc
Confidence            7777755 44433322   223344556888898877764                589999999999999999999986


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       180 ~  180 (322)
T 3soc_A          180 K  180 (322)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.68  E-value=1.1e-17  Score=165.32  Aligned_cols=138  Identities=17%  Similarity=0.126  Sum_probs=103.8

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc-----
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT-----  430 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~-----  430 (499)
                      .....+|...+.||+|+||+||+|+. .+|+.||+|++.....    ...+|+++++.++|||||++++++....     
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            34567899999999999999999995 5799999999975432    2337999999999999999999885421     


Q ss_pred             -------------------------------cceeeeeecccCCCccccccc--------cccccccccccccccceeec
Q 010856          431 -------------------------------FTVCLCLFHHSSASASASLVS--------SLTLSRPAKGGGFRGCVLWH  471 (499)
Q Consensus       431 -------------------------------~~~~~~l~~~~~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH  471 (499)
                                                     .....+++|++.+++.+.+..        .+.....++.|+++||+|||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  158 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH  158 (383)
T ss_dssp             -------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                           123556888988775444331        12234445689999999887


Q ss_pred             c------CCCcccEEEe-eCCCeEEEEEEEeecc
Q 010856          472 V------GVDFAAFVFV-LEPGVEVICFVFEILL  498 (499)
Q Consensus       472 ~------~~~p~~~l~~-~~~~~~~~~f~~~~~~  498 (499)
                      +      ++||.||+++ .++.++++|||++..+
T Consensus       159 ~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~  192 (383)
T 3eb0_A          159 SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKL  192 (383)
T ss_dssp             TTTEECSCCCGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             HCcCccCccCHHHEEEcCCCCcEEEEECCCCccc
Confidence            6      8999999998 5678999999998753

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.68  E-value=1.2e-17  Score=162.46  Aligned_cols=136  Identities=12%  Similarity=0.092  Sum_probs=106.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcC-CCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|...+.||+|+||.||+|+. .+++.||+|++.+...   ...+.+.+|++++.++ +||||+++++++...+  ..
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~--~~   85 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--RL   85 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EE
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCC--EE
Confidence            46799999999999999999996 4689999999986542   2345688999999987 8999999999987633  44


Q ss_pred             eeeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.| ++...+...    +...+.++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus        86 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~  159 (345)
T 3a8x_A           86 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  159 (345)
T ss_dssp             EEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBC
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEecccccc
Confidence            567777755 443333322    22344456899999999876      8999999999999999999998763

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.68  E-value=1.7e-17  Score=162.45  Aligned_cols=138  Identities=15%  Similarity=0.270  Sum_probs=107.4

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ...++|...+.||+|+||.||+|.. .+|+.||+|++.....  ...+.+.+|++++++++||||+++++++...+  ..
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~  103 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES--FH  103 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EE
Confidence            3456899999999999999999996 4699999999976542  33567899999999999999999999987633  44


Q ss_pred             eeeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC---CeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~f~~~~~  497 (499)
                      ++++|++.| .+.+.+...    +.....++.|++.||+|||+      +++|.||+++.++   .++++|||+++.
T Consensus       104 ~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~  180 (362)
T 2bdw_A          104 YLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  180 (362)
T ss_dssp             EEEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred             EEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence            557777755 444443322    22234456899999999876      8999999997654   499999999864

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.68  E-value=2.3e-17  Score=156.20  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=106.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.|...+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|++++++++||||+++++++...+  ..++++
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~   99 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYH--NMYIVM   99 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEEEEE
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCC--eEEEEE
Confidence            5799999999999999999996 468999999997654 344678999999999999999999999987633  455677


Q ss_pred             cccCC-Ccccccc--------ccccccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeec
Q 010856          439 HHSSA-SASASLV--------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~-~~~~~l~--------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~  497 (499)
                      |++.+ ++.+.+.        ........++.|+++||+|||+      +++|.||++.+   ++.++++|||++..
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~  176 (285)
T 3is5_A          100 ETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL  176 (285)
T ss_dssp             CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred             EeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence            77765 4433332        1222344556899999998876      89999999943   46799999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=4.1e-16  Score=136.32  Aligned_cols=129  Identities=26%  Similarity=0.307  Sum_probs=66.1

Q ss_pred             ccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeec
Q 010856           33 LEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG  112 (499)
Q Consensus        33 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  112 (499)
                      .+.+++++++++.+ |..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            34444555544422 2211  13455555555555544444445555555555555555544444455555555555555


Q ss_pred             CCCCCcCCccccCCccCCeeeccccCCCCCCcc-ccCCCCCcEEEcCCCcCCC
Q 010856          113 NKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDILNLNFSSNFLTS  164 (499)
Q Consensus       113 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~  164 (499)
                      |++++..+..|..+++|+.|++++|+++.+|.. +..+++|++|++++|.+.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            555554444555555555555555555555443 3445566666666665554

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.68  E-value=9.6e-18  Score=171.19  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=108.6

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ...+|...+.||+|+||.||+|+.. ++..||||+++... ...++|.+|++++++++|||||+++++|...+  ..+++
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~--~~~lv  294 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PFYII  294 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SCEEE
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCC--cEEEE
Confidence            4567899999999999999999975 48899999997654 34678999999999999999999999987633  44567


Q ss_pred             ecccC-CCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSS-ASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~-~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +|++. |++.+.+...      ......++.|++.||+|||+      +++|.||+++.++.++++|||+++..
T Consensus       295 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  368 (495)
T 1opk_A          295 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLM  368 (495)
T ss_dssp             EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECC
T ss_pred             EEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceec
Confidence            77776 4544444321      12233446899999998866      89999999999999999999998754

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.68  E-value=1.8e-17  Score=162.28  Aligned_cols=135  Identities=18%  Similarity=0.181  Sum_probs=105.3

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..++|...+.||+|+||+||+|+.. +++.||+|++..... ..+.+.+|+.++++++||||+++++++...+  ..+++
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~lv   94 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPT--HLAII   94 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCC--EEEEE
Confidence            3467999999999999999999964 799999999976542 3467889999999999999999999987643  44567


Q ss_pred             ecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCC--eEEEEEEEee
Q 010856          438 FHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG--VEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~--~~~~~f~~~~  496 (499)
                      ++|+.| ++...+..    .......++.|++.||+|||+      ++||.||+++.++.  ++++|||+++
T Consensus        95 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~  166 (361)
T 3uc3_A           95 MEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSK  166 (361)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-
T ss_pred             EEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccc
Confidence            777754 44333322    223344556899999998876      89999999976654  9999999875

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.68  E-value=3.3e-18  Score=165.13  Aligned_cols=135  Identities=15%  Similarity=0.166  Sum_probs=105.5

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|...+.||+|+||.||+|+.. +++.||+|++..... .....+.+|++++++++||||+++++++...+  ..++++
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~   79 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK--SLTLVF   79 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS--CEEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCC--EEEEEe
Confidence            46889999999999999999964 789999999965432 22234568999999999999999999987633  445678


Q ss_pred             cccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |++.|++...+...     ......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~  149 (324)
T 3mtl_A           80 EYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARA  149 (324)
T ss_dssp             ECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEEC
T ss_pred             cccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCccccc
Confidence            88888765554322     12234446899999998876      8999999999999999999999864

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.68  E-value=1e-17  Score=160.76  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=106.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccc--e
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFT--V  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~--~  433 (499)
                      .++|...+.||+|+||.||+|+. .+++.||+|++.....   ...+.+.+|++++++++||||+++++++...+..  .
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            36799999999999999999995 5789999999976542   2245789999999999999999999988653322  2


Q ss_pred             eeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++++|++.| .+.+.+..    .+.....++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~  165 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA  165 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence            2557777755 44333322    222344556899999999876      8999999999999999999998764

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.68  E-value=4.7e-18  Score=167.65  Aligned_cols=138  Identities=12%  Similarity=0.030  Sum_probs=105.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHH---HHHhcCCCCCccccc-------ee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVEC---EMMKNIRHRNLIKIL-------HG  425 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~---~il~~l~H~niv~l~-------~~  425 (499)
                      .++|...+.||+|+||+||+|+. .+|+.||||++....   ....+.+.+|+   +++++++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46788899999999999999995 579999999997542   34467899999   556667899999998       44


Q ss_pred             EEcccc---------------ceeeeeecccCCCccccccccc-----------cccccccccccccceeecc------C
Q 010856          426 VAVITF---------------TVCLCLFHHSSASASASLVSSL-----------TLSRPAKGGGFRGCVLWHV------G  473 (499)
Q Consensus       426 ~~~~~~---------------~~~~~l~~~~~~~~~~~l~~~~-----------~~~~~~~~~i~~gl~yLH~------~  473 (499)
                      +.....               ...++++|+++|++.+.+....           .....++.|++.||+|||+      +
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrD  231 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  231 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            432210               0244577888877666554322           2233456899999999876      8


Q ss_pred             CCcccEEEeeCCCeEEEEEEEeec
Q 010856          474 VDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       474 ~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +||.||+++.++.++++|||+++.
T Consensus       232 ikp~NIll~~~~~~kL~DFG~a~~  255 (377)
T 3byv_A          232 LRPVDIVLDQRGGVFLTGFEHLVR  255 (377)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEE
T ss_pred             CCHHHEEEcCCCCEEEEechhhee
Confidence            999999999999999999998863

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.68  E-value=9.8e-18  Score=162.76  Aligned_cols=139  Identities=14%  Similarity=0.167  Sum_probs=108.0

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEcccc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITF  431 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~  431 (499)
                      ....++|...+.||+|+||+||+|+. .+|+.||+|++++..   ....+.+.+|.+++..+ +||||+++++++...+ 
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~-   91 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE-   91 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS-
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC-
Confidence            35567899999999999999999996 468999999997643   33456788999999876 9999999999887643 


Q ss_pred             ceeeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ..++++||+.| ++...+..    .+.....++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        92 -~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~  167 (345)
T 1xjd_A           92 -NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKE  167 (345)
T ss_dssp             -EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             -EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhh
Confidence             44567777754 54443332    222344456899999999876      8999999999999999999998763

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.68  E-value=6.8e-18  Score=165.65  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=102.6

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc----cc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----FT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~~  432 (499)
                      .+.|...+.||+|+||.||+|.. .+|+.||||++....  ....+++.+|+++++.++||||+++++++...+    ..
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            46799999999999999999996 579999999996543  223567899999999999999999999986532    23


Q ss_pred             eeeeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++++++++++...+..   .......++.|+++||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  177 (367)
T 1cm8_A          104 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  177 (367)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence            4466788886655443322   122234456899999999876      8999999999999999999999864

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.68  E-value=1.8e-17  Score=156.73  Aligned_cols=137  Identities=13%  Similarity=0.091  Sum_probs=105.2

Q ss_pred             HHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ...++|...+.||+|+||.||+|...++..||+|++.... ...+++.+|++++++++||||+++++++...+  ..+++
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   97 (283)
T 3gen_A           21 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR--PIFII   97 (283)
T ss_dssp             CCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SEEEE
T ss_pred             CCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCC--CeEEE
Confidence            3456799999999999999999998888899999997654 23477999999999999999999999886533  34567


Q ss_pred             ecccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.+ .+.+.+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  169 (283)
T 3gen_A           98 TEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  169 (283)
T ss_dssp             ECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGG
T ss_pred             EeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccc
Confidence            777754 44333322     122234456899999998876      8999999999999999999998764

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.68  E-value=1.1e-17  Score=164.46  Aligned_cols=138  Identities=15%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc----c
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF----T  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~----~  432 (499)
                      .++|...+.||+|+||.||+|+. .+++.||||++....  ....+.+.+|+.+++.++||||+++++++...+.    .
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            46799999999999999999996 478999999997643  2335678899999999999999999999865332    2


Q ss_pred             eeeeeecccCCCccccccc--cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS--SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~--~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++|++.+++...+..  .......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       104 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          104 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  176 (371)
T ss_dssp             EEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred             ceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence            4567889988876554432  222334456899999999876      8999999999999999999999864

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.67  E-value=9.7e-18  Score=160.81  Aligned_cols=135  Identities=13%  Similarity=0.047  Sum_probs=104.8

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC--ccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG--RAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|...+.||+|+||+||+|+.. +|+.||||++.....  .....+.+|+..+.++ +||||+++++++...  ...++
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~--~~~~l  134 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG--GILYL  134 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeC--CEEEE
Confidence            57999999999999999999975 799999999865432  2334556666665554 999999999998763  34566


Q ss_pred             eecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++++++...+..     .+.....++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus       135 v~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~  206 (311)
T 3p1a_A          135 QTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVE  206 (311)
T ss_dssp             EEECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEE
T ss_pred             EEeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeee
Confidence            888888776554432     222344556899999999876      8999999999999999999998764

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.67  E-value=1.4e-17  Score=163.61  Aligned_cols=133  Identities=16%  Similarity=0.191  Sum_probs=97.9

Q ss_pred             ccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecccC
Q 010856          364 SENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      ...+.||+|+||.||+|+. .+|+.||+|+++.......+.+.+|++++++++||||+++++++...+  ..++++|++.
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv~E~~~  169 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKN--DIVLVMEYVD  169 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEEEECCT
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEEeCCC
Confidence            3357899999999999996 579999999998765455678999999999999999999999987643  4556778876


Q ss_pred             CC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEee--CCCeEEEEEEEeecc
Q 010856          443 AS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL--EPGVEVICFVFEILL  498 (499)
Q Consensus       443 ~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~--~~~~~~~~f~~~~~~  498 (499)
                      ++ +.+.+..     .+.....++.|+++||+|||+      +++|.||++.+  ++.++++|||+++..
T Consensus       170 ~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~  239 (373)
T 2x4f_A          170 GGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRY  239 (373)
T ss_dssp             TCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEEC
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceec
Confidence            54 3333321     122233446799999998876      89999999854  457999999998753

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.67  E-value=1.7e-17  Score=159.76  Aligned_cols=136  Identities=13%  Similarity=0.170  Sum_probs=106.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|...+.||+|+||.||+|+. .+++.||+|.+.... ...+.+.+|+++++.++||||+++++++...+  ..++++
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~lv~   80 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESME--ELVMIF   80 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC--EEEEEE
Confidence            36799999999999999999996 468999999987543 34567889999999999999999999987643  445677


Q ss_pred             cccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEee--CCCeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL--EPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~--~~~~~~~~f~~~~~~  498 (499)
                      |++.| ++.+.+...     +.....++.|++.||+|||+      +++|.||+++.  ++.++++|||+++..
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~  154 (321)
T 1tki_A           81 EFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL  154 (321)
T ss_dssp             CCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred             EeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeEC
Confidence            77755 444433321     22234456899999999876      89999999986  679999999998653

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.67  E-value=1.3e-17  Score=161.05  Aligned_cols=136  Identities=13%  Similarity=0.125  Sum_probs=99.6

Q ss_pred             hhhcccccccccCCcceEEEEEe----CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      .++|...+.||+|+||.||+|+.    .+|+.||+|++++..    ......+.+|++++++++||||+++++++...+ 
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-   94 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG-   94 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS-
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC-
Confidence            46799999999999999999996    468999999997643    223456889999999999999999999987633 


Q ss_pred             ceeeeeecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ..++++|++.|+ +...+...    ......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        95 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~  170 (327)
T 3a62_A           95 -KLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE  170 (327)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred             -EEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence             345577777544 43333222    22233446899999998876      8999999999999999999998753

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.67  E-value=8.2e-18  Score=162.68  Aligned_cols=142  Identities=15%  Similarity=0.169  Sum_probs=105.2

Q ss_pred             HHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          354 LELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       354 ~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      .......++|...+.||+|+||+||+|+. .+++.||+|++....  ....+.+.+|++++++++||||+++++++...+
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  106 (329)
T 3gbz_A           27 APSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNH  106 (329)
T ss_dssp             -----CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETT
T ss_pred             CCcccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCC
Confidence            33445667899999999999999999995 578999999997544  223456889999999999999999999987633


Q ss_pred             cceeeeeecccCCCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCC-----CeEEEEEEEe
Q 010856          431 FTVCLCLFHHSSASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-----GVEVICFVFE  495 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-----~~~~~~f~~~  495 (499)
                        ..++++|++.|++.+.+....    .....++.|++.||+|||+      ++||.||++..++     .++++|||++
T Consensus       107 --~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a  184 (329)
T 3gbz_A          107 --RLHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA  184 (329)
T ss_dssp             --EEEEEEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred             --EEEEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence              456678888887655544322    2234456899999999876      8999999995443     4999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      +.
T Consensus       185 ~~  186 (329)
T 3gbz_A          185 RA  186 (329)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.67  E-value=2.1e-17  Score=162.97  Aligned_cols=137  Identities=15%  Similarity=0.130  Sum_probs=107.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .+.|...+.||+|+||.||+|.. .+|+.||+|++..........+.+|++++++++||||+++++++...  ...++++
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--~~~~lv~  127 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK--YEMVLIL  127 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS--SEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeC--CEEEEEE
Confidence            35799999999999999999996 47899999999866544556789999999999999999999998763  3445577


Q ss_pred             cccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEee--CCCeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL--EPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~--~~~~~~~~f~~~~~~  498 (499)
                      |++.| ++.+.+..     .+.....++.|++.||+|||+      +++|.||+++.  ++.++++|||++..+
T Consensus       128 E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~  201 (387)
T 1kob_A          128 EFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  201 (387)
T ss_dssp             ECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             EcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceec
Confidence            77755 44343332     122234456899999999876      89999999974  357999999998653

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.67  E-value=1.9e-17  Score=159.93  Aligned_cols=139  Identities=19%  Similarity=0.146  Sum_probs=107.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-----CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|...+.||+|+||.||+|++     .+++.||+|++........+.+.+|++++++++||||+++++++...+....
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            46689999999999999999983     3688999999987655566789999999999999999999998866443344


Q ss_pred             eeeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++++++.+ ++.+.+...     +.....++.|+++||+|||+      +++|.||+++.++.++++|||+++..
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~  195 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL  195 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhc
Confidence            567777755 443333221     12233446899999998876      89999999999999999999988653

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.67  E-value=2.1e-17  Score=165.89  Aligned_cols=138  Identities=15%  Similarity=0.214  Sum_probs=105.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ...++|...+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|++++++++|||||++++++...+  ..
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~--~~   85 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEG--HH   85 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSS--EE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECC--EE
Confidence            3457799999999999999999995 579999999997654  234567899999999999999999999987633  44


Q ss_pred             eeeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~  497 (499)
                      ++++|++.| ++.+.+....    .....++.|++.||+|||+      ++||.||+++.   ++.++++|||+++.
T Consensus        86 ~lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~  162 (444)
T 3soa_A           86 YLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE  162 (444)
T ss_dssp             EEEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred             EEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence            556777755 4444443222    2234456899999999876      89999999984   46799999999864

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.67  E-value=1.6e-17  Score=160.23  Aligned_cols=140  Identities=20%  Similarity=0.201  Sum_probs=98.5

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CC---CEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DR---MEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~---~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      ...++|...+.||+|+||.||+|+.. ++   ..||+|+++...  ....+.+.+|++++++++||||+++++++...+.
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            34567999999999999999999964 33   379999997653  3446789999999999999999999999876432


Q ss_pred             c----eeeeeecccCC-Ccccccc----------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEE
Q 010856          432 T----VCLCLFHHSSA-SASASLV----------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       432 ~----~~~~l~~~~~~-~~~~~l~----------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~  490 (499)
                      .    ..+.+++++.+ ++...+.          ..+.....++.|+++||+|||+      ++||.||+++.++.++++
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~  179 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVA  179 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEEC
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEe
Confidence            2    12456666655 4433332          1222334456899999999876      899999999999999999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||+++.
T Consensus       180 Dfg~a~~  186 (323)
T 3qup_A          180 DFGLSRK  186 (323)
T ss_dssp             CCCC---
T ss_pred             ecccccc
Confidence            9999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.67  E-value=1.4e-17  Score=168.17  Aligned_cols=136  Identities=19%  Similarity=0.171  Sum_probs=107.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ...++|...+.||+|+||.||+|...++..||||+++... ...++|.+|++++++++||||+++++++.. +  ..+++
T Consensus       181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~--~~~iv  256 (452)
T 1fmk_A          181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E--PIYIV  256 (452)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-S--SCEEE
T ss_pred             cChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-C--ceEEE
Confidence            4456789999999999999999998777889999997654 345789999999999999999999998865 2  34457


Q ss_pred             ecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|++.+ ++.+.+..      .......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       257 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  329 (452)
T 1fmk_A          257 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL  329 (452)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-
T ss_pred             ehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCcccee
Confidence            777755 54444432      112234456899999998876      8999999999999999999999864

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.67  E-value=1.2e-17  Score=163.90  Aligned_cols=140  Identities=16%  Similarity=0.107  Sum_probs=110.8

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccc---cce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVIT---FTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---~~~  433 (499)
                      ..+.|...+.||+|+||.||+|+. .+++.||+|++..... ...+.+.+|++++++++||||+++++++....   ...
T Consensus        25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  104 (364)
T 3qyz_A           25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD  104 (364)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             ccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence            345799999999999999999996 4788999999975442 33467899999999999999999999886532   134


Q ss_pred             eeeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .+++++++.+++...+..   .......++.|++.||+|||+      +++|.||+++.++.++++|||+++..
T Consensus       105 ~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  178 (364)
T 3qyz_A          105 VYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA  178 (364)
T ss_dssp             EEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence            566888888876554432   222344456899999998876      89999999999999999999998653

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.67  E-value=1.8e-17  Score=157.06  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=106.3

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CC-------CEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DR-------MEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      .++|...+.||+|+||.||+|+.. ++       ..||+|++........+.+.+|++++++++||||+++++++...+ 
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-   85 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD-   85 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT-
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC-
Confidence            357899999999999999999853 34       579999997766566788999999999999999999999987633 


Q ss_pred             ceeeeeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCC--------eEEEE
Q 010856          432 TVCLCLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG--------VEVIC  491 (499)
Q Consensus       432 ~~~~~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~--------~~~~~  491 (499)
                       ..++++|++.| ++.+.+...     ......++.|++.||+|||+      +++|.||+++.++.        ++++|
T Consensus        86 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~D  164 (289)
T 4fvq_A           86 -ENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSD  164 (289)
T ss_dssp             -CCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECC
T ss_pred             -CCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeecc
Confidence             33457777764 444433322     12234456899999999876      89999999988876        99999


Q ss_pred             EEEeec
Q 010856          492 FVFEIL  497 (499)
Q Consensus       492 f~~~~~  497 (499)
                      ||++..
T Consensus       165 fg~~~~  170 (289)
T 4fvq_A          165 PGISIT  170 (289)
T ss_dssp             CCSCTT
T ss_pred             Cccccc
Confidence            998753

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.67  E-value=9.8e-18  Score=164.58  Aligned_cols=135  Identities=15%  Similarity=0.178  Sum_probs=102.3

Q ss_pred             hhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .++|...+.||+|+||+||+|+.      .+++.||||+++... .....++.+|+.++++++|||||++++++...+  
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--  147 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL--  147 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--
Confidence            35789999999999999999994      246789999997543 334567899999999999999999999987633  


Q ss_pred             eeeeeecccCC-Cccccccccc-----------cccccccccccccceeecc------CCCcccEEEeeCC---CeEEEE
Q 010856          433 VCLCLFHHSSA-SASASLVSSL-----------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVIC  491 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~~~-----------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~  491 (499)
                      ..++++|++.| ++.+.+....           .....++.|++.||+|||+      ++||.||+++.++   .++++|
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~D  227 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD  227 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred             CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECC
Confidence            33456777754 5444333211           1223456899999999876      8999999998554   499999


Q ss_pred             EEEee
Q 010856          492 FVFEI  496 (499)
Q Consensus       492 f~~~~  496 (499)
                      ||+++
T Consensus       228 FG~a~  232 (367)
T 3l9p_A          228 FGMAR  232 (367)
T ss_dssp             CHHHH
T ss_pred             Ccccc
Confidence            99875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.67  E-value=1.3e-17  Score=164.78  Aligned_cols=136  Identities=20%  Similarity=0.202  Sum_probs=105.1

Q ss_pred             hhhcccccccccCCcceEEEEEe--------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL--------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      .++|...+.||+|+||.||+|+.        ..+..||+|+++... ....+++.+|+++++++ +||||+++++++...
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            46789999999999999999984        123579999997654 23457799999999999 999999999998763


Q ss_pred             ccceeeeeecccCC-Cccccccc--------------------cccccccccccccccceeecc------CCCcccEEEe
Q 010856          430 TFTVCLCLFHHSSA-SASASLVS--------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~--------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      +  ..++++|++.+ ++.+.+..                    .+.....++.|++.||+|||+      ++||.||+++
T Consensus       148 ~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~  225 (382)
T 3tt0_A          148 G--PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT  225 (382)
T ss_dssp             S--SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC
T ss_pred             C--ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEc
Confidence            3  34556777755 44433322                    112233446899999999876      8999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||+++.
T Consensus       226 ~~~~~kL~DFG~a~~  240 (382)
T 3tt0_A          226 EDNVMKIADFGLARD  240 (382)
T ss_dssp             TTCCEEECSCSCCCC
T ss_pred             CCCcEEEcccCcccc
Confidence            999999999999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.67  E-value=1.2e-17  Score=162.74  Aligned_cols=138  Identities=15%  Similarity=0.194  Sum_probs=102.6

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-----ccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-----RAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      ...++|...+.||+|+||.||+|+. .+|+.||+|++.....     ...+.+.+|++++++++||||+++++++...+ 
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-   85 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS-   85 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT-
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC-
Confidence            3456799999999999999999996 4699999999975431     11356889999999999999999999986633 


Q ss_pred             ceeeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ..+++++++.+++...+..     .......++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus        86 -~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  161 (346)
T 1ua2_A           86 -NISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKS  161 (346)
T ss_dssp             -CCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             -ceEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence             4456788888765444332     222334456899999998876      8999999999999999999998764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.67  E-value=3.8e-17  Score=157.24  Aligned_cols=135  Identities=16%  Similarity=0.133  Sum_probs=105.8

Q ss_pred             cccccccccCCcceEEEEEe-----CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-----GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      |...+.||+|+||.||+|.+     .+++.||+|++..... ...+.+.+|++++++++||||+++++++...+....++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            48899999999999999874     2588999999976542 34567999999999999999999999988754445566


Q ss_pred             eecccCCC-ccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSAS-ASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.++ +.+.+..   .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       113 v~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  183 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKA  183 (318)
T ss_dssp             EECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             EEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCcccccc
Confidence            78887654 4333322   222334456899999998866      8999999999999999999998864

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.67  E-value=3.3e-17  Score=154.31  Aligned_cols=136  Identities=18%  Similarity=0.233  Sum_probs=108.3

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .+.|...+.||+|+||.||+|+.. ++..||+|++........+.+.+|++++++++||||+++++++...  ...++++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~~lv~   85 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN--TDIYLVM   85 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--SEEEEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC--CeEEEEE
Confidence            467999999999999999999964 6889999999876656678899999999999999999999998763  3445677


Q ss_pred             cccCCC-ccccccc----cccccccccccccccceeecc------CCCcccEEE---eeCCCeEEEEEEEeec
Q 010856          439 HHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF---VLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~---~~~~~~~~~~f~~~~~  497 (499)
                      +++.++ +.+.+..    .+.....++.|++.||+|||+      +++|.||++   ..++.++++|||++..
T Consensus        86 e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~  158 (277)
T 3f3z_A           86 ELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR  158 (277)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             eccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEeccccee
Confidence            777554 3333322    222344556899999998876      899999999   6678999999998764

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.67  E-value=7.8e-18  Score=162.67  Aligned_cols=136  Identities=17%  Similarity=0.125  Sum_probs=99.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCE----EEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRME----VAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .++|...+.||+|+||.||+|+. .+++.    ||+|.+.... ....+.+.+|++++++++||||+++++++...+  .
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~   91 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--V   91 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS--E
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--e
Confidence            35699999999999999999995 34544    5777775433 345678999999999999999999999998643  3


Q ss_pred             eeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++++++.+|++.+.+..     .+.....++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeE
Confidence            444445555555544432     122234456899999999876      8999999999999999999998764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.67  E-value=2.1e-17  Score=163.78  Aligned_cols=136  Identities=14%  Similarity=0.101  Sum_probs=107.2

Q ss_pred             HhhhcccccccccC--CcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKG--GFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G--~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ..++|+..+.||+|  +||.||+|+.. +|+.||||++....  ....+.+.+|++++++++|||||++++++...+  .
T Consensus        23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~  100 (389)
T 3gni_B           23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--E  100 (389)
T ss_dssp             CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--E
T ss_pred             CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC--E
Confidence            44679999999999  99999999964 79999999997654  233567889999999999999999999987633  4


Q ss_pred             eeeeecccCCCccc-cccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          434 CLCLFHHSSASASA-SLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       434 ~~~l~~~~~~~~~~-~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      .+++++++.++.+. .+..      .+.....++.|++.||+|||+      ++||.||+++.++.++++|||.+.
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~  176 (389)
T 3gni_B          101 LWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNL  176 (389)
T ss_dssp             EEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             EEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccce
Confidence            55677777654333 3221      122234456899999998876      899999999999999999999764

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.67  E-value=1.6e-17  Score=159.41  Aligned_cols=138  Identities=16%  Similarity=0.132  Sum_probs=105.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      ....+|...+.||+|+||.||+|+.      .+++.||+|++.... ....+.+.+|++++++++||||+++++++...+
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   99 (314)
T 2ivs_A           20 FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG   99 (314)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             cchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC
Confidence            3456799999999999999999984      245789999997654 234577899999999999999999999886633


Q ss_pred             cceeeeeecccC-CCcccccccc----------------------------ccccccccccccccceeecc------CCC
Q 010856          431 FTVCLCLFHHSS-ASASASLVSS----------------------------LTLSRPAKGGGFRGCVLWHV------GVD  475 (499)
Q Consensus       431 ~~~~~~l~~~~~-~~~~~~l~~~----------------------------~~~~~~~~~~i~~gl~yLH~------~~~  475 (499)
                        ..+++++++. +++.+.+...                            ......++.|+++||+|||+      +++
T Consensus       100 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dik  177 (314)
T 2ivs_A          100 --PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLA  177 (314)
T ss_dssp             --SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             --ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccc
Confidence              3455677775 4443333221                            11223446899999998876      899


Q ss_pred             cccEEEeeCCCeEEEEEEEeec
Q 010856          476 FAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       476 p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |.||+++.++.++++|||+++.
T Consensus       178 p~NIli~~~~~~kl~Dfg~~~~  199 (314)
T 2ivs_A          178 ARNILVAEGRKMKISDFGLSRD  199 (314)
T ss_dssp             GGGEEEETTTEEEECCCTTCEE
T ss_pred             hheEEEcCCCCEEEcccccccc
Confidence            9999999999999999998764

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.66  E-value=1.9e-17  Score=158.76  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=107.3

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|...+.||+|+||.||+|+.. +|+.||+|++.....  ...+.+.+|++++++++||||+++++++...+  ..+++
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   80 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR--RLHLV   80 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCC--eEEEE
Confidence            57899999999999999999964 699999999865542  22567889999999999999999999987633  44567


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.++....+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  151 (311)
T 4agu_A           81 FEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARL  151 (311)
T ss_dssp             EECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchh
Confidence            88887765443321     122344556899999998876      8999999999999999999998864

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.66  E-value=2.6e-17  Score=168.27  Aligned_cols=137  Identities=14%  Similarity=0.173  Sum_probs=107.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||+||+|+. .+|+.||+|++.+..   ....+.+.+|++++++++||||+++++++...+  ..+
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~--~l~  261 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT--DLC  261 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCC--EEE
Confidence            36788899999999999999997 479999999997643   234567899999999999999999999887633  445


Q ss_pred             eeecccCCCcc-ccccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASAS-ASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~-~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++|+.|+.+ ..+..        .+.....++.||+.||+|||+      ++||.||+++.++.++++|||+++.+
T Consensus       262 lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~  339 (543)
T 3c4z_A          262 LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL  339 (543)
T ss_dssp             EEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence            67777765433 33221        112233446899999998876      89999999999999999999998643

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.66  E-value=1.7e-17  Score=158.85  Aligned_cols=139  Identities=20%  Similarity=0.238  Sum_probs=106.5

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-----CccHHHHHHHHHHHhcCC---CCCccccceeEEcc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIR---HRNLIKILHGVAVI  429 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~il~~l~---H~niv~l~~~~~~~  429 (499)
                      ..++|...+.||+|+||+||+|+. .+++.||+|++....     ......+.+|++++++++   ||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            356899999999999999999995 579999999996432     122456788888887765   99999999998763


Q ss_pred             cc---ceeeeeecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          430 TF---TVCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       430 ~~---~~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      +.   ....++++++.+++...+...      +.....++.|++.||+|||+      +++|.||+++.++.++++|||+
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  166 (308)
T 3g33_A           87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL  166 (308)
T ss_dssp             CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred             CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCcc
Confidence            32   235567888888765554332      22344556899999999876      8999999999999999999998


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      +..
T Consensus       167 a~~  169 (308)
T 3g33_A          167 ARI  169 (308)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.66  E-value=1.7e-17  Score=161.46  Aligned_cols=139  Identities=19%  Similarity=0.140  Sum_probs=107.1

Q ss_pred             HHHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVI  429 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~  429 (499)
                      ....++|...+.||+|+||.||+|+..      +++.||+|+++.... ...+.+.+|++++++++||||+++++++...
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  122 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG  122 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence            345678999999999999999999963      348899999976542 3356799999999999999999999998763


Q ss_pred             ccceeeeeecccCC-Ccccccccc----------------------------ccccccccccccccceeecc------CC
Q 010856          430 TFTVCLCLFHHSSA-SASASLVSS----------------------------LTLSRPAKGGGFRGCVLWHV------GV  474 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~~----------------------------~~~~~~~~~~i~~gl~yLH~------~~  474 (499)
                      +  ..++++|++.+ ++.+.+...                            +.....++.|+++||+|||+      ++
T Consensus       123 ~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dl  200 (343)
T 1luf_A          123 K--PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  200 (343)
T ss_dssp             S--SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             C--ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            3  34556777755 443333221                            11123346899999999876      89


Q ss_pred             CcccEEEeeCCCeEEEEEEEeec
Q 010856          475 DFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       475 ~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|.||+++.++.++++|||++..
T Consensus       201 kp~NIl~~~~~~~kl~Dfg~~~~  223 (343)
T 1luf_A          201 ATRNCLVGENMVVKIADFGLSRN  223 (343)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHH
T ss_pred             CcceEEECCCCeEEEeecCCCcc
Confidence            99999999999999999998753

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.66  E-value=1.6e-17  Score=171.15  Aligned_cols=139  Identities=19%  Similarity=0.163  Sum_probs=110.0

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      +....++|.+.+.||+|+||.||+|...++..||||+++... ...++|.+|+++|++++|||||++++++.. +  ..+
T Consensus       262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~--~~~  337 (535)
T 2h8h_A          262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-E--PIY  337 (535)
T ss_dssp             SBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-S--SCE
T ss_pred             eecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-c--cce
Confidence            344567799999999999999999998777889999997654 345789999999999999999999998865 2  344


Q ss_pred             eeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++|++.+ ++.+.+..      .......++.|+++||+|||+      +++|.||+++.++.++++|||+++..
T Consensus       338 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  413 (535)
T 2h8h_A          338 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI  413 (535)
T ss_dssp             EEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTC
T ss_pred             EeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceec
Confidence            57777755 44444432      122234556899999999876      89999999999999999999998653

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.66  E-value=3.2e-17  Score=154.58  Aligned_cols=138  Identities=17%  Similarity=0.203  Sum_probs=108.1

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .+.++|...+.||+|+||.||+|+. .+++.||+|++....   ....+.+.+|++++++++||||+++++++...+  .
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~   83 (279)
T 3fdn_A            6 WALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT--R   83 (279)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--E
T ss_pred             eecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCC--E
Confidence            3567899999999999999999996 468899999996543   233567899999999999999999999987633  4


Q ss_pred             eeeeecccCCCc-cccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSASA-SASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~~-~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+++++++.++. ...+..    .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        84 ~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~  158 (279)
T 3fdn_A           84 VYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVH  158 (279)
T ss_dssp             EEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESC
T ss_pred             EEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEecccccc
Confidence            456777776543 333322    222334456899999999877      8999999999999999999998753

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.66  E-value=2.3e-17  Score=157.65  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=108.1

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|...+.||+|+||.||+|.. .+++.||+|++....    ....+.+.+|++++++++||||+++++++...+....
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            46799999999999999999996 578999999997543    2345779999999999999999999999865444455


Q ss_pred             eeeecccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.+++...+..      .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~  158 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEA  158 (305)
T ss_dssp             EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence            66788887764443322      112233446899999998866      8999999999999999999998764

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.66  E-value=1.9e-17  Score=162.61  Aligned_cols=135  Identities=19%  Similarity=0.127  Sum_probs=98.9

Q ss_pred             hcccccccccCCcceEEEEEeC--C--CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARLG--D--RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~~--~--~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .|...+.||+|+||.||+|+..  +  +..||+|.++... ....+++.+|+.++++++||||+++++++...+...+ +
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~-l  168 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL-V  168 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCE-E
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeE-E
Confidence            4677789999999999999852  3  2468999987543 3446789999999999999999999998865443333 4


Q ss_pred             eecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.+ ++.+.+...     ......++.|+++||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       169 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~  241 (373)
T 3c1x_A          169 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD  241 (373)
T ss_dssp             EEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             EEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccc
Confidence            6666654 554444321     11233445899999999876      8999999999999999999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.66  E-value=2.6e-17  Score=160.10  Aligned_cols=135  Identities=15%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCC--CCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRH--RNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H--~niv~l~~~~~~~~~~~~~  435 (499)
                      ...|...+.||+|+||.||+|...+++.||+|++.....  ...+.+.+|++++++++|  |||+++++++...+  ..+
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~--~~~   85 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIY   85 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCC--EEE
Confidence            356899999999999999999988899999999976542  234678999999999976  99999999987643  445


Q ss_pred             eeecccCCCcccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|+.++++.+.+.....    ....++.|++.||+|||+      ++||.||+++ ++.++++|||+++.
T Consensus        86 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~  156 (343)
T 3dbq_A           86 MVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQ  156 (343)
T ss_dssp             EEECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccc
Confidence            5677777776555543222    234456899999998876      8999999995 67899999998864

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.66  E-value=1.7e-17  Score=156.48  Aligned_cols=136  Identities=16%  Similarity=0.188  Sum_probs=106.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ...++|...+.||+|+||.||+|+..++..||+|++.... ...+.+.+|++++++++||||+++++++...   ..+++
T Consensus        10 v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~~~v   85 (279)
T 1qpc_A           10 VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE---PIYII   85 (279)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEEE
T ss_pred             cCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcCC---CcEEE
Confidence            3456799999999999999999998888899999997544 3457899999999999999999999987542   23456


Q ss_pred             ecccC-CCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSS-ASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~-~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++. +++.+.+..      .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  158 (279)
T 1qpc_A           86 TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL  158 (279)
T ss_dssp             EECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCccccc
Confidence            77774 454443332      122234456899999998876      8999999999999999999998764

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.66  E-value=2.4e-17  Score=161.74  Aligned_cols=137  Identities=17%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHH-HhcCCCCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEM-MKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~i-l~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ..++|...+.||+|+||+||+|+.+ +++.||+|++++..   ....+.+.+|..+ ++.++||||+++++++...+  .
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~--~  113 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD--K  113 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSS--E
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCC--E
Confidence            3467999999999999999999964 68999999997654   2234567788877 57799999999999887643  4


Q ss_pred             eeeeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++++||+.| ++...+...    +...+.++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus       114 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~  188 (373)
T 2r5t_A          114 LYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKE  188 (373)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGG
T ss_pred             EEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccc
Confidence            4557777755 443333322    22334456899999998876      8999999999999999999999763

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.66  E-value=9.1e-18  Score=161.83  Aligned_cols=145  Identities=19%  Similarity=0.188  Sum_probs=110.8

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKIL  423 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~  423 (499)
                      +..+++....++|...+.||+|+||.||+|+..      +++.||+|.+..... .....+.+|++++++++||||++++
T Consensus        15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   94 (322)
T 1p4o_A           15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL   94 (322)
T ss_dssp             CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred             cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence            344455566788999999999999999999853      367899999975542 3356789999999999999999999


Q ss_pred             eeEEccccceeeeeecccCC-Cccccccc--------------cccccccccccccccceeecc------CCCcccEEEe
Q 010856          424 HGVAVITFTVCLCLFHHSSA-SASASLVS--------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       424 ~~~~~~~~~~~~~l~~~~~~-~~~~~l~~--------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      +++...+  ..+++++++.+ ++.+.+..              .......++.|++.||+|||+      +++|.||+++
T Consensus        95 ~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~  172 (322)
T 1p4o_A           95 GVVSQGQ--PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVA  172 (322)
T ss_dssp             EEECSSS--SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEEC
T ss_pred             EEEccCC--ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEc
Confidence            9986633  34556777755 54443332              112233446899999998876      8999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||+++.
T Consensus       173 ~~~~~kl~Dfg~~~~  187 (322)
T 1p4o_A          173 EDFTVKIGDFGMTRD  187 (322)
T ss_dssp             TTCCEEECCTTCCCG
T ss_pred             CCCeEEECcCccccc
Confidence            999999999998763

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.66  E-value=1.7e-17  Score=167.39  Aligned_cols=137  Identities=15%  Similarity=0.133  Sum_probs=100.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..++|...+.||+|+||.||+|+. .+|+.||+|++....   ......+.+|+++++.++||||+++++++...+  ..
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~--~~  223 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD--RL  223 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETT--EE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCC--EE
Confidence            346799999999999999999996 579999999997542   233466889999999999999999999987643  45


Q ss_pred             eeeecccCCCcc-ccccc----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASAS-ASLVS----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~-~~l~~----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++||+.|+.+ ..+..    .......++.|++.||+|||+       ++||.||+++.++.++++|||+++.
T Consensus       224 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~  298 (446)
T 4ejn_A          224 CFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKE  298 (446)
T ss_dssp             EEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCT
T ss_pred             EEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCcee
Confidence            567888866543 33322    222344456899999999885       7999999999999999999998764

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.66  E-value=3.1e-17  Score=157.72  Aligned_cols=139  Identities=14%  Similarity=0.014  Sum_probs=106.6

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcc--ccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVI--TFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~--~~~~~~  435 (499)
                      ..++|...+.||+|+||.||+|+. .+++.||+|++........+.+.+|+++++.++||||+++++++...  .....+
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence            346799999999999999999996 57999999999765555567899999999999999999999998642  122445


Q ss_pred             eeecccCC-Cccccccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.+ ++.+.+..        .+.....++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus       107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~  183 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ  183 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred             EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence            56777755 44333322        122234456899999998876      8999999999999999999997653

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.66  E-value=1.6e-17  Score=166.03  Aligned_cols=134  Identities=16%  Similarity=0.173  Sum_probs=101.9

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcc----ccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVI----TFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~----~~~~~~  435 (499)
                      ..|...+.||+|+||+||+|+. .+|+.||||++....    +...+|++++++++|||||++++++...    +.....
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            4588999999999999999997 469999999996543    2234799999999999999999988542    122345


Q ss_pred             eeecccCCCccccccc--------cccccccccccccccceeecc------CCCcccEEEeeCCC-eEEEEEEEeecc
Q 010856          436 CLFHHSSASASASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG-VEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~-~~~~~f~~~~~~  498 (499)
                      ++++|+.+++...+..        .+.....++.|+++||+|||+      ++||.||+++.+++ ++++|||+++.+
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~  207 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  207 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhc
Confidence            6788888765443321        112234456899999999876      89999999986654 699999998753

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.66  E-value=4e-17  Score=157.86  Aligned_cols=135  Identities=16%  Similarity=0.163  Sum_probs=106.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|+..+.||+|+||.||+|+. .+++.||+|+++..   ..+.+.+|++++++++ ||||+++++++........+++
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            36799999999999999999995 57899999999743   3577999999999997 9999999999876444445567


Q ss_pred             ecccCCCccccccc--cccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS--SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~--~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~  497 (499)
                      ++++.++.+..+..  .......++.|++.||+|||+      +++|.||+++.++ .++++|||++..
T Consensus       112 ~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~  180 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF  180 (330)
T ss_dssp             EECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceE
Confidence            78876654443322  222344556899999998876      8999999998766 799999999864

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.66  E-value=3.3e-17  Score=162.13  Aligned_cols=134  Identities=14%  Similarity=0.175  Sum_probs=106.1

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCC--CCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIR--HRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~--H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..|...+.||+|+||.||+|...+++.||||++....  ....+.+.+|++++++++  ||||+++++++...+  ..++
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~--~~~l  133 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ--YIYM  133 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCC--EEEE
Confidence            4599999999999999999998779999999997654  234577999999999996  599999999887744  3455


Q ss_pred             eecccCCCcccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|+.++++.+.+.....    ....++.||+.||+|||+      ++||.||++ +++.++++|||+++.
T Consensus       134 v~E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll-~~~~~kl~DFG~a~~  203 (390)
T 2zmd_A          134 VMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIANQ  203 (390)
T ss_dssp             EEECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEE-SSSCEEECCCSSSCC
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEE-ECCeEEEEecCcccc
Confidence            677776666554433222    234456899999999876      899999999 568999999999864

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.65  E-value=3.4e-17  Score=154.63  Aligned_cols=136  Identities=14%  Similarity=0.098  Sum_probs=98.9

Q ss_pred             HhhhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ..++|...+.||+|+||.||+|+..    .+..||+|.+.... ....+.+.+|+.++++++||||+++++++..  . .
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~-~   89 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--N-P   89 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS--S-S
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc--C-c
Confidence            3467999999999999999999963    24579999987543 2345679999999999999999999998743  2 2


Q ss_pred             eeeeecccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .+++++++.+ ++.+.+..     .+.....++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           90 VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccc
Confidence            3456677655 44333321     122233446899999998876      8999999999999999999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=1.6e-16  Score=138.75  Aligned_cols=134  Identities=20%  Similarity=0.180  Sum_probs=87.1

Q ss_pred             ccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCce
Q 010856          123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEY  202 (499)
Q Consensus       123 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  202 (499)
                      +..+.+|+.|++++|+++.++......++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3445556666666666665543222223666666666666654  45666777777777777777655555577777777


Q ss_pred             eeCcCCcCCCCCCc--cccCCCCCCEEeCCCCcCCccCcc---cccCCCCCCEEEccCCcCc
Q 010856          203 LFLGYNRLQGSIPD--SFGDLISLKFLNLSNNNLSGAIPA---SLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       203 L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~  259 (499)
                      |++++|+++. .|.  .+..+++|+.|++++|+++...+.   .+..+++|+.||+++|.+.
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777763 333  677777888888888877743322   3777788888888877765

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.65  E-value=6.5e-17  Score=155.40  Aligned_cols=135  Identities=16%  Similarity=0.111  Sum_probs=104.8

Q ss_pred             hhcccc-cccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeee
Q 010856          361 DEFSEN-NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~-~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      +.|.+. +.||+|+||.||+|+. .+++.||||++........+.+.+|++++.++ +||||+++++++...+  ..+++
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~--~~~lv   89 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEED--RFYLV   89 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC--EEEEE
Confidence            457764 7899999999999995 57999999999876655677899999999884 7999999999987633  45567


Q ss_pred             ecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCC---eEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG---VEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~---~~~~~f~~~~~  497 (499)
                      +|++.| .+.+.+...    ......++.|++.||+|||+      +++|.||+++.++.   ++++|||++..
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~  163 (316)
T 2ac3_A           90 FEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSG  163 (316)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred             EEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence            777754 444433322    22334456899999999876      89999999987766   99999998753

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.65  E-value=6.1e-17  Score=161.78  Aligned_cols=137  Identities=14%  Similarity=0.120  Sum_probs=103.3

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--------ccHHHHHHHHHHHhcCCCCCccccceeEEc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--------RAFESFDVECEMMKNIRHRNLIKILHGVAV  428 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~il~~l~H~niv~l~~~~~~  428 (499)
                      ...++|...+.||+|+||+||+|+. .+++.||+|++.....        .....+.+|++++++++||||+++++++..
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~  211 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA  211 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            3456799999999999999999996 5689999999975431        112358899999999999999999998754


Q ss_pred             cccceeeeeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCC---CeEEEEEEE
Q 010856          429 ITFTVCLCLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVICFVF  494 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~f~~  494 (499)
                      .+   .++++|++.+ ++.+.+....    .....++.|++.||+|||+      ++||.||++..++   .++++|||+
T Consensus       212 ~~---~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~  288 (419)
T 3i6u_A          212 ED---YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGH  288 (419)
T ss_dssp             SE---EEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSST
T ss_pred             Cc---eEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeeccc
Confidence            32   3456777754 5444443322    2234446899999999876      8999999997654   499999998


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      ++.
T Consensus       289 a~~  291 (419)
T 3i6u_A          289 SKI  291 (419)
T ss_dssp             TTS
T ss_pred             cee
Confidence            764

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.65  E-value=2.8e-17  Score=158.08  Aligned_cols=137  Identities=15%  Similarity=0.144  Sum_probs=103.0

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcc----------
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVI----------  429 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~----------  429 (499)
                      ++|...+.||+|+||.||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++...          
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            57899999999999999999974 5899999999866555567899999999999999999999987431          


Q ss_pred             --ccceeeeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEee-CCCeEEEEEEEeec
Q 010856          430 --TFTVCLCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-EPGVEVICFVFEIL  497 (499)
Q Consensus       430 --~~~~~~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-~~~~~~~~f~~~~~  497 (499)
                        +....+++++++.|++.+.+..   .......++.|++.||+|||+      +++|.||+++. ++.++++|||+++.
T Consensus        91 ~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~  170 (320)
T 2i6l_A           91 LTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARI  170 (320)
T ss_dssp             CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBC
T ss_pred             ccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccc
Confidence              2234566788888765544432   122234456899999999876      89999999974 55889999998864

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.65  E-value=3.6e-17  Score=159.44  Aligned_cols=135  Identities=14%  Similarity=0.179  Sum_probs=96.7

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..+.|...+.||+|+||.||+|+.. +++.||+|+++...  ..+.+.+|++++++++||||+++++++...+  ..+++
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv  126 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPT--EISLV  126 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCC--eEEEE
Confidence            3467999999999999999999974 68899999997543  3456889999999999999999999987633  44557


Q ss_pred             ecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~  497 (499)
                      +|++.| .+.+.+...    +.....++.|++.||+|||+      +++|.||++..   ++.++++|||++..
T Consensus       127 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~  200 (349)
T 2w4o_A          127 LELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKI  200 (349)
T ss_dssp             ECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC----
T ss_pred             EEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccc
Confidence            777754 443433322    22334456899999999876      89999999975   77899999999864

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.65  E-value=3e-17  Score=156.28  Aligned_cols=135  Identities=18%  Similarity=0.144  Sum_probs=102.2

Q ss_pred             hcccccccccCCcceEEEEEe-CC---CCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GD---RMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~---~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .|...+.||+|+||+||+|+. .+   +..||+|.+..... ...+.+.+|++++++++||||+++++++...+...++ 
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~-  100 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV-  100 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE-
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE-
Confidence            355668999999999999984 23   33799999975442 3457899999999999999999999998765544444 


Q ss_pred             eeccc-CCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHS-SASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~-~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++ ++++.+.+...     ......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       101 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  173 (298)
T 3pls_A          101 LLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARD  173 (298)
T ss_dssp             EECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCT
T ss_pred             EEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCccc
Confidence            45555 55554444321     12233445799999998876      8999999999999999999998863

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.65  E-value=3.5e-17  Score=158.40  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=107.9

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCc--cHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGR--AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..++|...+.||+|+||.||+|+.. +|+.||+|++......  ..+.+.+|++++++++||||+++++++...  ...+
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~  100 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK--KRWY  100 (331)
T ss_dssp             CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TEEE
T ss_pred             hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC--CEEE
Confidence            3467999999999999999999964 6999999999665422  245688999999999999999999998763  3455


Q ss_pred             eeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.++....+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       101 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  173 (331)
T 4aaa_A          101 LVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFART  173 (331)
T ss_dssp             EEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC--
T ss_pred             EEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCcee
Confidence            6788887775554321     122344556899999998876      8999999999999999999998754

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.65  E-value=2.3e-17  Score=159.26  Aligned_cols=135  Identities=16%  Similarity=0.140  Sum_probs=101.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCE----EEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRME----VAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ++|...+.||+|+||+||+|+. .+++.    ||+|.+.... ....+.+.+|+.++++++||||+++++++..  ...+
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~   90 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG--SSLQ   90 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB--SSEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CccE
Confidence            5688999999999999999995 35554    7777775433 2334567899999999999999999998854  2233


Q ss_pred             eeeeccc-CCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHS-SASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~-~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                       .+++++ +|++.+.+...     +.....++.|++.||+|||+      ++||.||+++.++.++++|||+++..
T Consensus        91 -~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~  165 (325)
T 3kex_A           91 -LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLL  165 (325)
T ss_dssp             -EEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred             -EEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCccccc
Confidence             455555 45554444321     22234446899999999876      89999999999999999999998653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.65  E-value=3.8e-17  Score=156.84  Aligned_cols=142  Identities=20%  Similarity=0.196  Sum_probs=102.0

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI  429 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~  429 (499)
                      +....++|...+.||+|+||.||+|+..    +++.||+|+++...  ....+.+.+|++++++++||||+++++++...
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            3345577899999999999999999852    35589999997553  23356799999999999999999999998764


Q ss_pred             ccc---eeeeeecccCC-Ccccccc----------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEE
Q 010856          430 TFT---VCLCLFHHSSA-SASASLV----------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEV  489 (499)
Q Consensus       430 ~~~---~~~~l~~~~~~-~~~~~l~----------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~  489 (499)
                      +..   ..+++++++.+ ++...+.          ..+.....++.|+++||+|||+      +++|.||+++.++.+++
T Consensus       109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl  188 (313)
T 3brb_A          109 SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCV  188 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEE
T ss_pred             cccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEE
Confidence            322   23456677655 4433331          1122234456899999999877      89999999999999999


Q ss_pred             EEEEEeec
Q 010856          490 ICFVFEIL  497 (499)
Q Consensus       490 ~~f~~~~~  497 (499)
                      +|||++..
T Consensus       189 ~Dfg~~~~  196 (313)
T 3brb_A          189 ADFGLSKK  196 (313)
T ss_dssp             CSCSCC--
T ss_pred             eecCccee
Confidence            99998764

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.65  E-value=8.8e-17  Score=153.27  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=102.2

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhc--CCCCCccccceeEEcc--ccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKN--IRHRNLIKILHGVAVI--TFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~--l~H~niv~l~~~~~~~--~~~~~~  435 (499)
                      .++|...+.||+|+||+||+|+. +++.||||++...   ..+.+.+|.+++..  ++||||+++++++...  .....+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence            46799999999999999999988 7889999999653   34556677777665  8999999999987652  123345


Q ss_pred             eeecccCC-Cccccccc---cccccccccccccccceeec--------c------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVS---SLTLSRPAKGGGFRGCVLWH--------V------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~---~~~~~~~~~~~i~~gl~yLH--------~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++.+ ++.+.+..   .+.....++.|++.||+|||        +      ++||.||+++.++.++++|||+++.
T Consensus        83 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~  162 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVM  162 (301)
T ss_dssp             EEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeee
Confidence            67777765 44333321   22233445689999999998        4      8999999999999999999998764

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.65  E-value=1.9e-17  Score=160.24  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=104.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|...+.||+|+||.||+|+. .+|+.||||++.....  .+.+.+|+++++++ +||||+++++++...+  ..++++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~--~~~lv~   84 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGK--YNAMVL   84 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETT--EEEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCC--ccEEEE
Confidence            5799999999999999999995 5799999999975432  34688999999999 9999999999887633  445677


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCC-----eEEEEEEEeec
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG-----VEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~-----~~~~~f~~~~~  497 (499)
                      +++++++.+.+..     .+.....++.|++.||+|||+      ++||.||+++.++.     ++++|||+++.
T Consensus        85 e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           85 ELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred             EeCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence            7776665544432     222344556899999998876      89999999988776     99999999874

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.65  E-value=8.2e-17  Score=154.26  Aligned_cols=137  Identities=18%  Similarity=0.119  Sum_probs=102.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..++|...+.||+|+||.||+|+. .+|+.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~  107 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN--EL  107 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EE
T ss_pred             cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--cE
Confidence            446799999999999999999996 579999999997543   233567899999999999999999999987633  44


Q ss_pred             eeeecccCCC-ccccccc--------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSAS-ASASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++++.++ +.+.+..        .......++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus       108 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~  185 (310)
T 2wqm_A          108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRF  185 (310)
T ss_dssp             EEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC-----
T ss_pred             EEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceee
Confidence            5677777664 3333221        122233456899999999876      8999999999999999999998764

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.65  E-value=2.8e-17  Score=160.53  Aligned_cols=138  Identities=16%  Similarity=0.138  Sum_probs=109.3

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEccc---ccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVIT---FTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~---~~~~  434 (499)
                      .++|...+.||+|+||.||+|+. .+|+.||||++..... .....+.+|++++++++||||+++++++....   ....
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            46799999999999999999996 4789999999975432 33567889999999999999999999875421   2345


Q ss_pred             eeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++++.+++...+..   .......++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus        90 ~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  161 (353)
T 2b9h_A           90 YIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARI  161 (353)
T ss_dssp             EEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence            66888888776544332   222344556899999998876      8999999999999999999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=1.3e-16  Score=139.37  Aligned_cols=109  Identities=20%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             ccCCCCCCEEeccCCcCCccCCccccCCC-CCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccC
Q 010856           51 ISNLTNSTIVNLGGNKLNGSIPITLSKLQ-KLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL  129 (499)
Q Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  129 (499)
                      +.++++|++|++++|.++.. +. +..+. +|+.|++++|.+++.  ..+..+++|++|++++|++++..+..|..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            44445555555555555532 22 22222 555555555555433  344455555555555555554433333445555


Q ss_pred             CeeeccccCCCCCCc--cccCCCCCcEEEcCCCcCC
Q 010856          130 RIVSLGSNKLTSVPL--TFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus       130 ~~L~L~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~  163 (499)
                      +.|++++|+++.+|.  .+..+++|+.|++++|.++
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence            555555555544443  3444444444444444443

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.65  E-value=1.6e-16  Score=149.50  Aligned_cols=137  Identities=15%  Similarity=0.161  Sum_probs=108.2

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..++|+..+.||+|+||.||+|+.. +++.||+|+++... ....+.+.+|+++++.++||||+++++++...  ...++
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~l   82 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG--NIQYL   82 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEET--TEEEE
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcC--CEEEE
Confidence            3467999999999999999999964 78999999997654 34457899999999999999999999988763  24455


Q ss_pred             eecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.+ ++.+.+....    .....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  154 (276)
T 2yex_A           83 FLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATV  154 (276)
T ss_dssp             EEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccc
Confidence            6777755 4444443221    2234456899999998866      8999999999999999999998754

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.65  E-value=1.8e-17  Score=159.24  Aligned_cols=147  Identities=16%  Similarity=0.131  Sum_probs=111.2

Q ss_pred             ccCHHHHHHHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcC-CCCCccc
Q 010856          350 TFSYLELFRATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNI-RHRNLIK  421 (499)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l-~H~niv~  421 (499)
                      .+....+....++|...+.||+|+||.||+|+.      .+++.||+|++..... ...+.+.+|+++++++ +||||++
T Consensus        16 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~   95 (316)
T 2xir_A           16 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   95 (316)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             cccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeee
Confidence            345556666678999999999999999999983      3568999999976542 3356789999999999 7999999


Q ss_pred             cceeEEccccceeeeeecccCC-Ccccccccc--------------------ccccccccccccccceeecc------CC
Q 010856          422 ILHGVAVITFTVCLCLFHHSSA-SASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GV  474 (499)
Q Consensus       422 l~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~  474 (499)
                      +++++...+. ..+++++++.+ ++.+.+...                    ......++.|++.||+|||+      ++
T Consensus        96 ~~~~~~~~~~-~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~di  174 (316)
T 2xir_A           96 LLGACTKPGG-PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDL  174 (316)
T ss_dssp             EEEEECCTTS-CCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             EEEEEecCCC-ceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccC
Confidence            9999876433 24456677654 443333221                    11223345799999998877      89


Q ss_pred             CcccEEEeeCCCeEEEEEEEeec
Q 010856          475 DFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       475 ~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|.||+++.++.++++|||+++.
T Consensus       175 kp~Nil~~~~~~~kl~Dfg~~~~  197 (316)
T 2xir_A          175 AARNILLSEKNVVKICDFGLARD  197 (316)
T ss_dssp             SGGGEEECGGGCEEECCCGGGSC
T ss_pred             ccceEEECCCCCEEECCCccccc
Confidence            99999999999999999998764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.65  E-value=3.3e-17  Score=158.77  Aligned_cols=137  Identities=19%  Similarity=0.204  Sum_probs=104.2

Q ss_pred             HhhhcccccccccCCcceEEEEEe--------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL--------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      ..++|...+.||+|+||.||+|+.        .+++.||+|++.... ....+.+.+|+++++++ +||||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            347899999999999999999985        246789999997654 23456789999999999 99999999999876


Q ss_pred             cccceeeeeecccCC-Cccccccccc--------------------cccccccccccccceeecc------CCCcccEEE
Q 010856          429 ITFTVCLCLFHHSSA-SASASLVSSL--------------------TLSRPAKGGGFRGCVLWHV------GVDFAAFVF  481 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~-~~~~~l~~~~--------------------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~  481 (499)
                      .+  ..+++++++.+ ++.+.+....                    .....++.|++.||+|||+      +++|.||++
T Consensus       113 ~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll  190 (334)
T 2pvf_A          113 DG--PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLV  190 (334)
T ss_dssp             SS--CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             CC--ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEE
Confidence            33  34556777755 4433332211                    1123345799999998876      899999999


Q ss_pred             eeCCCeEEEEEEEeec
Q 010856          482 VLEPGVEVICFVFEIL  497 (499)
Q Consensus       482 ~~~~~~~~~~f~~~~~  497 (499)
                      +.++.++++|||+++.
T Consensus       191 ~~~~~~kL~Dfg~~~~  206 (334)
T 2pvf_A          191 TENNVMKIADFGLARD  206 (334)
T ss_dssp             CTTCCEEECCCTTCEE
T ss_pred             cCCCCEEEcccccccc
Confidence            9999999999998764

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.65  E-value=3e-17  Score=161.49  Aligned_cols=138  Identities=14%  Similarity=0.101  Sum_probs=108.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccccc----
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITFT----  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~----  432 (499)
                      .+.|...+.||+|+||.||+|+. .+|+.||+|++.....  ...+.+.+|+++++.++||||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            46789999999999999999996 4799999999976432  2356789999999999999999999998764322    


Q ss_pred             eeeeeecccCCCccccccc--cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS--SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~--~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++++++.+++...+..  .+.....++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       121 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~  193 (371)
T 4exu_A          121 DFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARH  193 (371)
T ss_dssp             CCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred             eEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence            2356788888776544332  223344556899999999876      8999999999999999999998864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.65  E-value=5.5e-17  Score=152.87  Aligned_cols=137  Identities=16%  Similarity=0.283  Sum_probs=107.7

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..++|...+.||+|+||.||+|+. .+|+.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   86 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN--YV   86 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSS--EE
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCC--eE
Confidence            456799999999999999999996 579999999997543   233577999999999999999999999987633  44


Q ss_pred             eeeecccCCCccc-cccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASA-SLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~-~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.++.+. .+..     .......++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus        87 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  161 (278)
T 3cok_A           87 YLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQ  161 (278)
T ss_dssp             EEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceee
Confidence            5677777554333 2221     122334456899999998876      8999999999999999999998764

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.65  E-value=4.3e-17  Score=157.46  Aligned_cols=137  Identities=18%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCE----EEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRME----VAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      .++|...+.||+|+||.||+|+. .+++.    ||+|.+.... ....+.+.+|++++++++||||+++++++....  .
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~   91 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--V   91 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS--E
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC--c
Confidence            35799999999999999999995 45554    4677665433 345678999999999999999999999988643  3


Q ss_pred             eeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++++++.+|++.+.+..     .......++.|++.||+|||+      ++||.||+++.++.++++|||++...
T Consensus        92 ~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~  167 (327)
T 3lzb_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             EEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred             eEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence            444445555555544432     122234456899999998876      89999999999999999999998653

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.64  E-value=1.6e-17  Score=157.35  Aligned_cols=137  Identities=18%  Similarity=0.153  Sum_probs=107.5

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ....+|+..+.||+|+||.||+|+.. ++..||+|.+.... ...+.+.+|++++++++||||+++++++...+  ..++
T Consensus        10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~   86 (288)
T 3kfa_A           10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PFYI   86 (288)
T ss_dssp             CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SEEE
T ss_pred             ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--CEEE
Confidence            45678999999999999999999964 58899999997543 34678999999999999999999999886533  3455


Q ss_pred             eecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.| ++.+.+..      .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        87 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~  160 (288)
T 3kfa_A           87 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRL  160 (288)
T ss_dssp             EEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGT
T ss_pred             EEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCcccee
Confidence            7777764 44333321      112233445799999998876      8999999999999999999998764

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.64  E-value=5.6e-17  Score=154.77  Aligned_cols=135  Identities=17%  Similarity=0.231  Sum_probs=105.8

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..+.|...+.||+|+||.||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++...+  ..+++
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   94 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDG--KLWIM   94 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC---CEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCC--eEEEE
Confidence            3467999999999999999999974 68999999997666566788999999999999999999999987633  44567


Q ss_pred             ecccCCCcccccc------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          438 FHHSSASASASLV------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       438 ~~~~~~~~~~~l~------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ++++.++....+.      ........++.|++.||+|||+      +++|.||+++.++.++++|||++
T Consensus        95 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             EECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             EEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            7887665443321      1222334456899999998876      89999999999999999999975

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.64  E-value=4.6e-17  Score=170.19  Aligned_cols=134  Identities=14%  Similarity=0.175  Sum_probs=103.0

Q ss_pred             hccccc-ccccCCcceEEEEEeC---CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          362 EFSENN-LIGKGGFGSVYKARLG---DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~~-~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++.... .||+|+||.||+|.++   ++..||||+++... ....++|.+|++++++++|||||++++++.. +  ..++
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~--~~~l  412 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E--ALML  412 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-S--SEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-C--CeEE
Confidence            344444 7999999999999853   46679999997654 3456889999999999999999999999865 2  2445


Q ss_pred             eecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++|++.++ +.+.+..     .+.....++.|++.||+|||+      +++|.||+++.++.++++|||+++.+
T Consensus       413 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~  486 (613)
T 2ozo_A          413 VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKAL  486 (613)
T ss_dssp             EEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTC
T ss_pred             EEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccc
Confidence            67777554 4333321     122344556899999999876      89999999999999999999998653

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.64  E-value=8.8e-17  Score=154.87  Aligned_cols=136  Identities=16%  Similarity=0.166  Sum_probs=106.6

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC------ccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG------RAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .+.|...+.||+|+||.||+|+.. +|+.||+|++.....      ...+.+.+|++++++++||||+++++++...+  
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--   88 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRT--   88 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCC--
Confidence            467999999999999999999964 699999999976532      13577999999999999999999999987633  


Q ss_pred             eeeeeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC----CeEEEEEEEeec
Q 010856          433 VCLCLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP----GVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~----~~~~~~f~~~~~  497 (499)
                      ..++++|++.| ++.+.+...    ......++.|++.||+|||+      +++|.||++++++    .++++|||++..
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~  168 (321)
T 2a2a_A           89 DVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (321)
T ss_dssp             EEEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEE
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCcccee
Confidence            44567777754 444433322    22334556899999998866      8999999998877    799999998764

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.64  E-value=4e-17  Score=160.24  Aligned_cols=135  Identities=14%  Similarity=0.123  Sum_probs=103.6

Q ss_pred             HHhhhcccccccccCCcceEEEEE------eCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC---CCCccccceeEEc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKAR------LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR---HRNLIKILHGVAV  428 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~---H~niv~l~~~~~~  428 (499)
                      ...++|...+.||+|+||+||+|.      ..+++.||+|+++..   ...++.+|++++.+++   |+||+++++++..
T Consensus        62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~  138 (365)
T 3e7e_A           62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF  138 (365)
T ss_dssp             CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred             ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence            345679999999999999999994      356889999999753   3467888888888876   9999999999876


Q ss_pred             cccceeeeeecccC-CCccccccc---------cccccccccccccccceeecc------CCCcccEEEee---------
Q 010856          429 ITFTVCLCLFHHSS-ASASASLVS---------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---------  483 (499)
Q Consensus       429 ~~~~~~~~l~~~~~-~~~~~~l~~---------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---------  483 (499)
                      .+  ..++++||+. |++.+.+..         .+.....++.|+++||+|||+      ++||.||+++.         
T Consensus       139 ~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~  216 (365)
T 3e7e_A          139 QN--GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDED  216 (365)
T ss_dssp             SS--CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC----
T ss_pred             CC--CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccc
Confidence            44  3345677775 444444431         122244556899999998877      89999999988         


Q ss_pred             --CCCeEEEEEEEeec
Q 010856          484 --EPGVEVICFVFEIL  497 (499)
Q Consensus       484 --~~~~~~~~f~~~~~  497 (499)
                        ++.++++|||+++.
T Consensus       217 ~~~~~~kl~DFG~a~~  232 (365)
T 3e7e_A          217 DLSAGLALIDLGQSID  232 (365)
T ss_dssp             --CTTEEECCCTTCEE
T ss_pred             cccCCEEEeeCchhhh
Confidence              89999999999864

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.64  E-value=5.4e-17  Score=151.92  Aligned_cols=135  Identities=16%  Similarity=0.083  Sum_probs=107.3

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|...+.||+|+||.||+|+..+++.||+|++..... ..+.+.+|++++++++||||+++++++...+  ..+++++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~e   83 (267)
T 3t9t_A            7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVTE   83 (267)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SCEEEEC
T ss_pred             hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--CeEEEEe
Confidence            467899999999999999999988888999999976542 3478999999999999999999999887633  3456777


Q ss_pred             ccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++.+ .+.+.+...     ......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        84 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           84 FMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRF  153 (267)
T ss_dssp             CCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             CCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccc
Confidence            7755 443333221     22233446899999998876      8999999999999999999998754

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.64  E-value=6.7e-17  Score=152.36  Aligned_cols=139  Identities=12%  Similarity=0.130  Sum_probs=108.5

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..++|+..+.||+|+||.||+|+. .+++.||+|++....  ....+.+.+|++++++++||||+++++++...+....+
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   83 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   83 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred             chhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence            356899999999999999999996 479999999997654  23456799999999999999999999988654444556


Q ss_pred             eeecccCC-Cccccccc--------cccccccccccccccceeec-----------cCCCcccEEEeeCCCeEEEEEEEe
Q 010856          436 CLFHHSSA-SASASLVS--------SLTLSRPAKGGGFRGCVLWH-----------VGVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH-----------~~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      +++|++.+ ++.+.+..        .+.....++.|++.||+|||           .+++|.||+++.++.++++|||++
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~  163 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  163 (279)
T ss_dssp             EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHH
T ss_pred             EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchh
Confidence            67888865 44333321        22233445688999998765           478999999999999999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       164 ~~  165 (279)
T 2w5a_A          164 RI  165 (279)
T ss_dssp             HH
T ss_pred             ee
Confidence            54

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.64  E-value=6.4e-17  Score=156.83  Aligned_cols=136  Identities=13%  Similarity=0.174  Sum_probs=107.8

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||.||+|+.. +++.||+|++....   ....+.+.+|+++++.++||||+++++++...+  ..+
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~  117 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND--FVF  117 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--eEE
Confidence            467999999999999999999964 68899999997653   234567899999999999999999999987633  455


Q ss_pred             eeecccCCCccccc-cc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASL-VS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l-~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++.++.+..+ ..    .+.....++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus       118 lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~  190 (335)
T 2owb_A          118 VVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATK  190 (335)
T ss_dssp             EEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCcee
Confidence            67888865543332 21    222344456899999998876      8999999999999999999998764

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.64  E-value=2.2e-17  Score=161.85  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=113.5

Q ss_pred             ccccCHHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-----CCCccc
Q 010856          348 WRTFSYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-----HRNLIK  421 (499)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-----H~niv~  421 (499)
                      ...+++++.....++|...+.||+|+||.||+|+. .+++.||+|++.... ...+.+.+|+++++.+.     ||||++
T Consensus        22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~  100 (360)
T 3llt_A           22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVK  100 (360)
T ss_dssp             GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred             ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence            34455555556678899999999999999999996 578999999997432 33466788999999886     999999


Q ss_pred             cceeEEccccceeeeeecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEEee------
Q 010856          422 ILHGVAVITFTVCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL------  483 (499)
Q Consensus       422 l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~------  483 (499)
                      +++++...+  ..+++++++++++.+.+...      ......++.|++.||+|||+      ++||.||+++.      
T Consensus       101 ~~~~~~~~~--~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~  178 (360)
T 3llt_A          101 YHGKFMYYD--HMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKS  178 (360)
T ss_dssp             EEEEEEETT--EEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEE
T ss_pred             ccceeeECC--eeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEcccccccc
Confidence            999987743  45567788877665554322      12234456899999998876      89999999964      


Q ss_pred             -------------------CCCeEEEEEEEeec
Q 010856          484 -------------------EPGVEVICFVFEIL  497 (499)
Q Consensus       484 -------------------~~~~~~~~f~~~~~  497 (499)
                                         ++.++++|||++..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~  211 (360)
T 3llt_A          179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATF  211 (360)
T ss_dssp             EEEEECTTTCCEEEEEEESCCCEEECCCTTCEE
T ss_pred             ccchhcccccccccccccCCCCEEEEeccCcee
Confidence                               78999999999864

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.64  E-value=4.3e-17  Score=155.23  Aligned_cols=136  Identities=18%  Similarity=0.111  Sum_probs=102.8

Q ss_pred             hhcccccccccCCcceEEEEEeCC----CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD----RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..|...+.||+|+||.||+|+..+    +..||+|.+.... ....+.+.+|++++++++||||+++++++...+...+ 
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~-  103 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL-  103 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE-
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE-
Confidence            458888999999999999998532    3368999987544 2345779999999999999999999998766443333 


Q ss_pred             eeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.+ ++.+.+...     ......++.|++.||+|||+      +++|.||++++++.++++|||++..
T Consensus       104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~  177 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD  177 (298)
T ss_dssp             EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred             EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECccccccc
Confidence            46677655 444333221     12233445799999998876      8999999999999999999998864

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.64  E-value=6.6e-17  Score=153.66  Aligned_cols=136  Identities=13%  Similarity=0.173  Sum_probs=107.5

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||.||+|+.. +++.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..+
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~   91 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND--FVF   91 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC--EEE
Confidence            467899999999999999999964 68899999997653   234567899999999999999999999987633  445


Q ss_pred             eeecccCCCcccccc-c----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLV-S----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~-~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++.++....+. .    .+.....++.|+++||+|||+      +++|.||+++.++.++++|||++..
T Consensus        92 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  164 (294)
T 2rku_A           92 VVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATK  164 (294)
T ss_dssp             EEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCcee
Confidence            677888655433322 1    222334456899999998876      8999999999999999999998764

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.64  E-value=3.7e-17  Score=158.50  Aligned_cols=138  Identities=16%  Similarity=0.135  Sum_probs=109.3

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEc------ccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAV------ITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~------~~~  431 (499)
                      ..+|...+.||+|+||.||+|+. .+++.||+|++........+.+.+|+.+++++. ||||+++++++..      .+.
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            45799999999999999999996 478999999997665555678999999999996 9999999998853      122


Q ss_pred             ceeeeeecccCCCccccccc-------cccccccccccccccceeecc--------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          432 TVCLCLFHHSSASASASLVS-------SLTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~-------~~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ...+++++++.|++.+.+..       .+.....++.|++.||+|||+        +++|.||+++.++.++++|||++.
T Consensus       107 ~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  186 (337)
T 3ll6_A          107 AEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSAT  186 (337)
T ss_dssp             EEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCB
T ss_pred             ceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccce
Confidence            34567888888876554432       222334456889999987765        679999999999999999999876


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       187 ~  187 (337)
T 3ll6_A          187 T  187 (337)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.64  E-value=4e-17  Score=158.12  Aligned_cols=138  Identities=17%  Similarity=0.174  Sum_probs=106.2

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--------ccHHHHHHHHHHHhcCCCCCccccceeEEcc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--------RAFESFDVECEMMKNIRHRNLIKILHGVAVI  429 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~  429 (499)
                      ..++|...+.||+|+||.||+|+. .+++.||+|++.....        ...+.+.+|++++++++||||+++++++...
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            456799999999999999999995 5789999999976531        1234678899999999999999999998763


Q ss_pred             ccceeeeeeccc-CC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          430 TFTVCLCLFHHS-SA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       430 ~~~~~~~l~~~~-~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +  ..+++++++ .| ++...+...    +.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       102 ~--~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~  179 (335)
T 3dls_A          102 G--FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAY  179 (335)
T ss_dssp             S--EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             C--EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceE
Confidence            3  344566655 44 333333222    22334456899999998876      8999999999999999999998864


Q ss_pred             c
Q 010856          498 L  498 (499)
Q Consensus       498 ~  498 (499)
                      .
T Consensus       180 ~  180 (335)
T 3dls_A          180 L  180 (335)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.64  E-value=3e-17  Score=157.44  Aligned_cols=138  Identities=16%  Similarity=0.144  Sum_probs=106.5

Q ss_pred             HHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccCC-ccHHHHHHHHHHHhcC-CCCCccccceeEEcc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECEMMKNI-RHRNLIKILHGVAVI  429 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~  429 (499)
                      ...++|...+.||+|+||.||+|+.      .+++.||+|++..... ...+.+.+|+++++++ +||||+++++++...
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   99 (313)
T 1t46_A           20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (313)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             cChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence            3446799999999999999999984      3578999999976542 3457799999999999 999999999998763


Q ss_pred             ccceeeeeecccCC-Ccccccccc----------------------ccccccccccccccceeecc------CCCcccEE
Q 010856          430 TFTVCLCLFHHSSA-SASASLVSS----------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFV  480 (499)
Q Consensus       430 ~~~~~~~l~~~~~~-~~~~~l~~~----------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l  480 (499)
                      +  ..++++|++.+ ++.+.+...                      +.....++.|+++||+|||+      +++|.||+
T Consensus       100 ~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil  177 (313)
T 1t46_A          100 G--PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNIL  177 (313)
T ss_dssp             S--SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             C--CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEE
Confidence            3  34556777755 444333221                      12233445899999999876      89999999


Q ss_pred             EeeCCCeEEEEEEEeec
Q 010856          481 FVLEPGVEVICFVFEIL  497 (499)
Q Consensus       481 ~~~~~~~~~~~f~~~~~  497 (499)
                      ++.++.++++|||++..
T Consensus       178 ~~~~~~~kl~Dfg~~~~  194 (313)
T 1t46_A          178 LTHGRITKICDFGLARD  194 (313)
T ss_dssp             EETTTEEEECCCGGGSC
T ss_pred             EcCCCCEEEcccccccc
Confidence            99999999999998764

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.64  E-value=3.5e-17  Score=159.32  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=105.0

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      ....++|...+.||+|+||.||+|+.      .+++.||+|++.... ....+.+.+|+++++++ +||||+++++++..
T Consensus        41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  120 (344)
T 1rjb_A           41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL  120 (344)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence            34557899999999999999999995      245689999997543 33457899999999999 99999999999876


Q ss_pred             cccceeeeeecccCC-Ccccccccc---------------------------ccccccccccccccceeecc------CC
Q 010856          429 ITFTVCLCLFHHSSA-SASASLVSS---------------------------LTLSRPAKGGGFRGCVLWHV------GV  474 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~-~~~~~l~~~---------------------------~~~~~~~~~~i~~gl~yLH~------~~  474 (499)
                      .+  ..+++++++.+ ++.+.+...                           +.....++.|++.||+|||+      ++
T Consensus       121 ~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Di  198 (344)
T 1rjb_A          121 SG--PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  198 (344)
T ss_dssp             SS--SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             CC--ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            33  34556777754 544433221                           11223346899999998876      89


Q ss_pred             CcccEEEeeCCCeEEEEEEEeec
Q 010856          475 DFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       475 ~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|.||+++.++.++++|||++..
T Consensus       199 kp~NIll~~~~~~kL~Dfg~~~~  221 (344)
T 1rjb_A          199 AARNVLVTHGKVVKICDFGLARD  221 (344)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSC
T ss_pred             ChhhEEEcCCCcEEeCCCccCcc
Confidence            99999999999999999998764

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.64  E-value=4.4e-17  Score=152.80  Aligned_cols=136  Identities=14%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|...+.||+|+||.||+|+. +++.||+|++....  ....+.+.+|++++++++||||+++++++...+....+++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI   87 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred             HHHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence            45789999999999999999998 48899999997654  2335679999999999999999999999877533445567


Q ss_pred             ecccCC-Ccccccccc------ccccccccccccccceeecc--------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSA-SASASLVSS------LTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++++.+ ++.+.+...      +.....++.|+++||+|||+        +++|.||+++.++.++++||||..
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~  161 (271)
T 3kmu_A           88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKF  161 (271)
T ss_dssp             EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCC
T ss_pred             ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEecccee
Confidence            777765 554444332      22234456899999998886        579999999989999999998864

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.64  E-value=5.4e-17  Score=158.56  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=109.3

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEcccc----c
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVITF----T  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~----~  432 (499)
                      .++|...+.||+|+||.||+|+. .+|+.||||++.....  ...+.+.+|+.++++++||||+++++++...+.    .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            35789999999999999999996 4799999999975432  235678999999999999999999999876432    2


Q ss_pred             eeeeeecccCCCccccccc--cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS--SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~--~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..+++++++.+++...+..  .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~  175 (353)
T 3coi_A          103 DFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARH  175 (353)
T ss_dssp             CCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred             eEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence            3456788888776554432  222344556899999999876      8999999999999999999998753

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.64  E-value=5.8e-17  Score=152.72  Aligned_cols=135  Identities=19%  Similarity=0.108  Sum_probs=102.7

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..++|+..+.||+|+||.||+|+. +|+.||+|+++...  ..+.+.+|++++++++||||+++++++...+. ..++++
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv~   94 (278)
T 1byg_A           19 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVT   94 (278)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEE
T ss_pred             ChhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCC-ceEEEE
Confidence            356799999999999999999987 57899999997543  45789999999999999999999998765332 344567


Q ss_pred             cccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.+ ++.+.+..      .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~  166 (278)
T 1byg_A           95 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  166 (278)
T ss_dssp             CCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             ecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeecccccc
Confidence            77765 44443332      122234556899999998876      8999999999999999999998753

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.64  E-value=9.1e-17  Score=157.38  Aligned_cols=135  Identities=13%  Similarity=0.107  Sum_probs=106.6

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++...+  ..+++
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~lv  109 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISIC  109 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECC--EEEEE
Confidence            367999999999999999999964 78999999997653 233567999999999999999999999887633  45567


Q ss_pred             ecccCC-Ccccccccc----ccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          438 FHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      ++++.| ++.+.+...    ......++.|++.||+|||+       +++|.||+++.++.++++|||++.
T Consensus       110 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  180 (360)
T 3eqc_A          110 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSG  180 (360)
T ss_dssp             ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             EECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCc
Confidence            888865 443333322    22234456888999888764       789999999999999999999874

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.64  E-value=1.2e-16  Score=151.88  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=101.1

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      |.....||+|+||.||+|+. .+++.||+|.+........+.+.+|+++++.++||||+++++++...+  ...++++++
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~  101 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENG--FIKIFMEQV  101 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEEEECC
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCC--cEEEEEEeC
Confidence            44456899999999999995 578999999998766555678999999999999999999999987633  445567777


Q ss_pred             CCC-cccccccc-------ccccccccccccccceeecc------CCCcccEEEee-CCCeEEEEEEEeec
Q 010856          442 SAS-ASASLVSS-------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-EPGVEVICFVFEIL  497 (499)
Q Consensus       442 ~~~-~~~~l~~~-------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-~~~~~~~~f~~~~~  497 (499)
                      .++ +.+.+...       +.....++.|++.||+|||+      +++|.||+++. ++.++++|||++..
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~  172 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKR  172 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEE
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccc
Confidence            544 33333221       11223345799999998876      89999999987 78999999998764

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.64  E-value=4.3e-17  Score=155.33  Aligned_cols=136  Identities=21%  Similarity=0.260  Sum_probs=105.6

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .++|+..+.||+|+||.||+|+.. +|+.||+|++....  ....+.+.+|++++++++||||+++++++...+  ..++
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~l   79 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--KLYL   79 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEE
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCC--ceEE
Confidence            357899999999999999999964 78999999986543  233467899999999999999999999987633  4556


Q ss_pred             eecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.+++.+.+...      ......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        80 v~e~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  152 (299)
T 2r3i_A           80 VFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARA  152 (299)
T ss_dssp             EEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECSTTHHHH
T ss_pred             EEEcccCCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHeEEcCCCCEEECcchhhhh
Confidence            7888877655444322      12233456899999999876      8999999999999999999998653

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.64  E-value=5.4e-17  Score=158.03  Aligned_cols=138  Identities=12%  Similarity=0.072  Sum_probs=107.7

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFT  432 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~  432 (499)
                      ...++|...+.||+|+||+||+|+.+ +|+.||+|++++..   ....+.+.+|.+++..+ +||||+++++++...+  
T Consensus        17 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~--   94 (353)
T 2i0e_A           17 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--   94 (353)
T ss_dssp             --CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSS--
T ss_pred             CchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCC--
Confidence            34578999999999999999999975 58899999997643   34467789999999988 8999999999887643  


Q ss_pred             eeeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++||+.| ++...+..    .+.....++.|++.||+|||+      ++||.||+++.++.++++|||++..
T Consensus        95 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~  170 (353)
T 2i0e_A           95 RLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  170 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccc
Confidence            44557777755 44444332    222334456899999998876      8999999999999999999998763

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.64  E-value=7.6e-17  Score=152.68  Aligned_cols=135  Identities=15%  Similarity=0.185  Sum_probs=103.1

Q ss_pred             hhccccc-ccccCCcceEEEEEeC---CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENN-LIGKGGFGSVYKARLG---DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~-~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|.... .||+|+||.||+|...   ++..||+|+++... ....+.+.+|++++++++||||+++++++.. +  ..+
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~--~~~   85 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E--ALM   85 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-S--SEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecC-C--CcE
Confidence            4566665 8999999999999853   57889999997654 3346779999999999999999999999843 2  244


Q ss_pred             eeecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++++.++ +.+.+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||+++..
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~  160 (287)
T 1u59_A           86 LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL  160 (287)
T ss_dssp             EEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeee
Confidence            567777654 3333321     122334456899999998876      89999999999999999999988643

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.63  E-value=1.9e-16  Score=155.32  Aligned_cols=141  Identities=14%  Similarity=0.191  Sum_probs=109.0

Q ss_pred             HHHHHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCc--------cHHHHHHHHHHHhcC-CCCCccccce
Q 010856          355 ELFRATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGR--------AFESFDVECEMMKNI-RHRNLIKILH  424 (499)
Q Consensus       355 ~~~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~--------~~~~~~~E~~il~~l-~H~niv~l~~  424 (499)
                      ......++|...+.||+|+||.||+|+.. +|+.||||++......        ..+.+.+|+.+++++ +||||+++++
T Consensus        88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  167 (365)
T 2y7j_A           88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID  167 (365)
T ss_dssp             HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence            33455678999999999999999999974 7999999999765421        145678999999998 8999999999


Q ss_pred             eEEccccceeeeeecccCCCcc-ccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEE
Q 010856          425 GVAVITFTVCLCLFHHSSASAS-ASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       425 ~~~~~~~~~~~~l~~~~~~~~~-~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~  493 (499)
                      ++...  ...++++|++.|+.+ +.+..    .+.....++.|++.||+|||+      +++|.||+++.++.++++|||
T Consensus       168 ~~~~~--~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG  245 (365)
T 2y7j_A          168 SYESS--SFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFG  245 (365)
T ss_dssp             EEEBS--SEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             EEeeC--CEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecC
Confidence            88763  345567888866433 33221    222344456899999998876      899999999999999999999


Q ss_pred             Eeec
Q 010856          494 FEIL  497 (499)
Q Consensus       494 ~~~~  497 (499)
                      ++..
T Consensus       246 ~~~~  249 (365)
T 2y7j_A          246 FSCH  249 (365)
T ss_dssp             TCEE
T ss_pred             cccc
Confidence            8764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.63  E-value=1e-16  Score=163.40  Aligned_cols=136  Identities=18%  Similarity=0.216  Sum_probs=106.2

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .+.|...+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|++++++++||||+++++++....  ..+
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~  102 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG--YFY  102 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC--EEE
Confidence            467999999999999999999964 79999999997653   345678999999999999999999999987633  344


Q ss_pred             eeeccc-CCCccccccccc----cccccccccccccceeecc------CCCcccEEEe---eCCCeEEEEEEEeec
Q 010856          436 CLFHHS-SASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFV---LEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~-~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~---~~~~~~~~~f~~~~~  497 (499)
                      ++++++ +|++.+.+....    .....++.|++.||+|||+      +++|.||++.   .++.++++|||++..
T Consensus       103 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  178 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTH  178 (484)
T ss_dssp             EEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred             EEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence            566666 445444443222    2234456899999999876      8999999994   567899999998754

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.63  E-value=1.2e-16  Score=163.15  Aligned_cols=136  Identities=12%  Similarity=0.163  Sum_probs=101.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .+.|...+.||+|+||+||+|+. .++..||+|++....  ....+.+.+|+++++.++|||||++++++....  ..++
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~l  113 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKR--NYYL  113 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC--EEEE
Confidence            45699999999999999999996 478999999997654  334577999999999999999999999987633  4455


Q ss_pred             eecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC---CeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~f~~~~~  497 (499)
                      +++|+.| ++.+.+...    +.....++.|++.||+|||+      ++||.||++...+   .++++|||++..
T Consensus       114 v~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~  188 (494)
T 3lij_A          114 VMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAV  188 (494)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence            6777755 443433322    22334456899999999876      8999999997643   499999998764

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.63  E-value=1e-16  Score=156.21  Aligned_cols=135  Identities=10%  Similarity=0.104  Sum_probs=106.6

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCc---c--------------HHHHHHHHHHHhcCCCCCcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR---A--------------FESFDVECEMMKNIRHRNLIKI  422 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~---~--------------~~~~~~E~~il~~l~H~niv~l  422 (499)
                      .++|...+.||+|+||.||+|+. +|+.||+|++......   .              .+.+.+|++++++++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            46899999999999999999999 8999999999754311   1              1789999999999999999999


Q ss_pred             ceeEEccccceeeeeecccCC-Ccccc------ccc------cccccccccccccccceeecc-------CCCcccEEEe
Q 010856          423 LHGVAVITFTVCLCLFHHSSA-SASAS------LVS------SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFV  482 (499)
Q Consensus       423 ~~~~~~~~~~~~~~l~~~~~~-~~~~~------l~~------~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~  482 (499)
                      ++++...+  ..++++|++.+ ++.+.      +..      .+.....++.|++.||+|||+       +++|.||+++
T Consensus       109 ~~~~~~~~--~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~  186 (348)
T 2pml_X          109 EGIITNYD--EVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMD  186 (348)
T ss_dssp             SEEEESSS--EEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEEC
T ss_pred             EEEEeeCC--eEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEc
Confidence            99987743  45567777766 44333      221      111233446889999988885       7999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||++..
T Consensus       187 ~~~~~kl~dfg~~~~  201 (348)
T 2pml_X          187 KNGRVKLSDFGESEY  201 (348)
T ss_dssp             TTSCEEECCCTTCEE
T ss_pred             CCCcEEEeccccccc
Confidence            999999999998864

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.63  E-value=1.7e-16  Score=149.95  Aligned_cols=135  Identities=18%  Similarity=0.183  Sum_probs=106.1

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC------ccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG------RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ++|...+.||+|+||.||+|+.. +++.||+|+++....      ...+.+.+|++++++++||||+++++++...+  .
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~   82 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKT--D   82 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--E
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCC--e
Confidence            56999999999999999999974 699999999976431      23678999999999999999999999987633  4


Q ss_pred             eeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCC----CeEEEEEEEeec
Q 010856          434 CLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP----GVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~----~~~~~~f~~~~~  497 (499)
                      .+++++++.+ .+.+.+..    .+.....++.|++.||+|||+      +++|.||+++.++    .++++|||++..
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~  161 (283)
T 3bhy_A           83 VVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHK  161 (283)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEeccccee
Confidence            4567777754 44333322    222344556899999998876      8999999998776    799999998764

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.63  E-value=1.8e-16  Score=151.37  Aligned_cols=135  Identities=18%  Similarity=0.184  Sum_probs=107.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      +.|...+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+.++++++||||+++++++...+  ..++++
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv~   99 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT--KLWIIM   99 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--eEEEEE
Confidence            4588999999999999999995 578999999997654 344678999999999999999999999887633  445677


Q ss_pred             cccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++.++.+..+...    ......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       100 e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~  168 (303)
T 3a7i_A          100 EYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQ  168 (303)
T ss_dssp             ECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeeccccee
Confidence            87766543332221    22234456899999998876      8999999999999999999998754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.63  E-value=1.1e-16  Score=151.25  Aligned_cols=135  Identities=18%  Similarity=0.186  Sum_probs=105.0

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc-------
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT-------  430 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~-------  430 (499)
                      ...+|...+.||+|+||.||+|+.. +++.||+|++....    +.+.+|++++++++||||+++++++...+       
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            3467999999999999999999974 79999999997543    45779999999999999999999875421       


Q ss_pred             -------cceeeeeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEE
Q 010856          431 -------FTVCLCLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVI  490 (499)
Q Consensus       431 -------~~~~~~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~  490 (499)
                             ....++++|++.+ .+.+.+..      .+.....++.|++.||+|||+      +++|.||++++++.++++
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~  164 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIG  164 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEEC
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEEC
Confidence                   2234567788766 44333321      122233456899999998876      899999999999999999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||++..
T Consensus       165 Dfg~~~~  171 (284)
T 2a19_B          165 DFGLVTS  171 (284)
T ss_dssp             CCTTCEE
T ss_pred             cchhhee
Confidence            9998764

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.63  E-value=1e-16  Score=151.46  Aligned_cols=136  Identities=15%  Similarity=0.282  Sum_probs=104.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .++|...+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|++++++++||||+++++++...+  ..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~   82 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES--FHYL   82 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCC--EEEE
Confidence            46799999999999999999996 468999999997654  233567889999999999999999999987633  3455


Q ss_pred             eecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCC---eEEEEEEEeec
Q 010856          437 LFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG---VEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~---~~~~~f~~~~~  497 (499)
                      +++++.|+ +...+...    ......++.|++.||+|||+      +++|.||+++.++.   ++++|||++..
T Consensus        83 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~  157 (284)
T 3kk8_A           83 VFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  157 (284)
T ss_dssp             EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence            67777654 33333222    22234456889999998876      89999999976554   99999998754

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.63  E-value=1e-16  Score=163.52  Aligned_cols=137  Identities=18%  Similarity=0.231  Sum_probs=106.4

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..+.|...+.||+|+||+||+|+. .+++.||+|++....  ....+.+.+|++++++++||||+++++++....  ..+
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~   97 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSS--SFY   97 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--EEE
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCC--EEE
Confidence            346799999999999999999996 479999999997543  345678999999999999999999999987633  445


Q ss_pred             eeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~  497 (499)
                      ++++++.| ++.+.+...    ......++.|++.||+|||+      ++||.||++..   ++.++++|||++..
T Consensus        98 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  173 (486)
T 3mwu_A           98 IVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (486)
T ss_dssp             EEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence            56777654 444443322    22344556899999999876      89999999954   44699999998764

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.63  E-value=1.5e-16  Score=149.69  Aligned_cols=136  Identities=16%  Similarity=0.152  Sum_probs=107.7

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||.||+|+.. +|+.||+|++....   ....+.+.+|+++++.++||||+++++++...+  ..+
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   87 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT--DFF   87 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC--eEE
Confidence            467999999999999999999974 79999999997543   234567899999999999999999999987633  445


Q ss_pred             eeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.+ .+.+.+..    .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~  160 (276)
T 2h6d_A           88 MVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNM  160 (276)
T ss_dssp             EEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGC
T ss_pred             EEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccc
Confidence            67777755 44333322    222334456899999999876      8999999999999999999998754

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.63  E-value=6.4e-17  Score=160.32  Aligned_cols=135  Identities=16%  Similarity=0.160  Sum_probs=102.9

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc----cceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT----FTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~~~~~  435 (499)
                      ...|...+.||+|+||+||+|+...+..||+|++.....    ...+|+++++.++||||+++++++....    .....
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            346999999999999999999986666699998865432    1237999999999999999999986532    22345


Q ss_pred             eeecccCCCccccccc--------cccccccccccccccceeecc------CCCcccEEEe-eCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV-LEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~-~~~~~~~~~f~~~~~~  498 (499)
                      +++||+.+++...+..        .......++.|+++||+|||+      ++||.||+++ .++.++++|||+++.+
T Consensus       115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~  192 (394)
T 4e7w_A          115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL  192 (394)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccc
Confidence            6788888775443321        112234456899999998876      8999999998 6788999999998653

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.63  E-value=8.7e-17  Score=152.42  Aligned_cols=137  Identities=12%  Similarity=0.008  Sum_probs=99.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-cc-HHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RA-FESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~-~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..++|...+.||+|+||.||+|+. .+|+.||+|++..... .. .+.+.+|...++.++||||+++++++...+  ..+
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~--~~~   82 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG--DVW   82 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--SEE
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC--CEE
Confidence            346799999999999999999996 5799999999975532 22 233445555688899999999999987633  445


Q ss_pred             eeecccCCCccccccc--------cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSASASASLVS--------SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++|++.|++.+.+..        .+.....++.|++.||+|||+       +++|.||+++.++.++++|||++..
T Consensus        83 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  159 (290)
T 3fme_A           83 ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGY  159 (290)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC-----
T ss_pred             EEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCccc
Confidence            6788888765443321        222334556899999988875       6899999999999999999999864

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.63  E-value=9.4e-17  Score=153.39  Aligned_cols=137  Identities=12%  Similarity=0.132  Sum_probs=104.3

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..+.|...+.||+|+||.||+|+. .+|+.||+|+++.......+.+.+|++++++++||||+++++++...+  ..+++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv   84 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTT--HYYLV   84 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCC--EEEEE
Confidence            346799999999999999999996 479999999998665445567899999999999999999999987633  44567


Q ss_pred             ecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEE---eeCCCeEEEEEEEeec
Q 010856          438 FHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVF---VLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~---~~~~~~~~~~f~~~~~  497 (499)
                      +|++.| ++.+.+...    ......++.|++.||+|||+      +++|.||++   ++++.++++|||++..
T Consensus        85 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~  158 (304)
T 2jam_A           85 MQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM  158 (304)
T ss_dssp             ECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCC
T ss_pred             EEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCccee
Confidence            777755 443433222    22234456899999998876      899999999   5678899999998753

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.62  E-value=1.4e-16  Score=150.70  Aligned_cols=136  Identities=17%  Similarity=0.210  Sum_probs=107.1

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||.||+|+.. +++.||+|++....   ....+.+.+|++++++++||||+++++++...+  ..+
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   90 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK--RIY   90 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCC--EEE
Confidence            467999999999999999999964 68899999996542   233567999999999999999999999987633  445


Q ss_pred             eeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.+ .+.+.+..    .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~  163 (284)
T 2vgo_A           91 LMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVH  163 (284)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEeccccccc
Confidence            67777755 44333332    222334456899999998877      8999999999999999999998753

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.62  E-value=1.8e-16  Score=162.38  Aligned_cols=137  Identities=13%  Similarity=0.184  Sum_probs=104.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-------------ccHHHHHHHHHHHhcCCCCCccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-------------RAFESFDVECEMMKNIRHRNLIKILH  424 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-------------~~~~~~~~E~~il~~l~H~niv~l~~  424 (499)
                      ..+.|...+.||+|+||+||+|+. .+++.||+|++.....             ...+.+.+|++++++++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            356799999999999999999996 4689999999975431             23567899999999999999999999


Q ss_pred             eEEccccceeeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCC---CeEEE
Q 010856          425 GVAVITFTVCLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVI  490 (499)
Q Consensus       425 ~~~~~~~~~~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~  490 (499)
                      ++...+  ..+++++++.| ++.+.+..    .+.....++.|++.||+|||+      +++|.||++..++   .++++
T Consensus       114 ~~~~~~--~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~  191 (504)
T 3q5i_A          114 VFEDKK--YFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIV  191 (504)
T ss_dssp             EEECSS--EEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEEC
T ss_pred             EEEcCC--EEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEE
Confidence            987633  44567777755 44444332    223344556899999998876      8999999998765   59999


Q ss_pred             EEEEeec
Q 010856          491 CFVFEIL  497 (499)
Q Consensus       491 ~f~~~~~  497 (499)
                      |||++..
T Consensus       192 Dfg~a~~  198 (504)
T 3q5i_A          192 DFGLSSF  198 (504)
T ss_dssp             CCTTCEE
T ss_pred             ECCCCEE
Confidence            9998864

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.62  E-value=5.9e-17  Score=158.31  Aligned_cols=136  Identities=14%  Similarity=0.134  Sum_probs=105.9

Q ss_pred             hhhcccccccccCCcceEEEEEe----CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcC-CCCCccccceeEEccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNI-RHRNLIKILHGVAVIT  430 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~  430 (499)
                      .++|...+.||+|+||.||+|+.    .+++.||||+++...    ....+.+.+|+++++++ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            46799999999999999999996    368999999996532    23346678899999999 6999999999887633


Q ss_pred             cceeeeeecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FTVCLCLFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~~~~~l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                        ..++++||+.+ .+.+.+...    ......++.|++.||+|||+      ++||.||+++.++.++++|||+++.
T Consensus       133 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~  208 (355)
T 1vzo_A          133 --KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  208 (355)
T ss_dssp             --EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             --eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence              44567788765 443333322    22233446799999999876      8999999999999999999999874

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.62  E-value=1.6e-16  Score=151.47  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=107.1

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccc-------
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVIT-------  430 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~-------  430 (499)
                      ..++|+..+.||+|+||.||+|+. .+++.||+|++.... ...+.+.+|++++++++||||+++++++....       
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            356799999999999999999996 479999999996532 34567899999999999999999999876421       


Q ss_pred             ----cceeeeeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          431 ----FTVCLCLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       431 ----~~~~~~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                          ....++++|++.| ++.+.+...     ......++.|+++||+|||+      +++|.||+++.++.++++|||+
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  162 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGL  162 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcc
Confidence                2344557777755 444433321     12233456899999999876      8999999999999999999998


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      +..
T Consensus       163 ~~~  165 (303)
T 1zy4_A          163 AKN  165 (303)
T ss_dssp             CSC
T ss_pred             hhh
Confidence            754

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.62  E-value=8.1e-17  Score=157.99  Aligned_cols=140  Identities=13%  Similarity=0.054  Sum_probs=102.9

Q ss_pred             HhhhcccccccccCCcceEEEEEeCC------CCEEEEEEeeccCCc-----------cHHHHHHHHHHHhcCCCCCccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGD------RMEVAVKVFNLQCGR-----------AFESFDVECEMMKNIRHRNLIK  421 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~------~~~vavK~~~~~~~~-----------~~~~~~~E~~il~~l~H~niv~  421 (499)
                      ..++|...+.||+|+||.||+|....      ++.||+|++......           ....+.+|+..++.++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            34579999999999999999998643      478999998765311           1123456677788899999999


Q ss_pred             cceeEEcccc--ceeeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEe--eCCC
Q 010856          422 ILHGVAVITF--TVCLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV--LEPG  486 (499)
Q Consensus       422 l~~~~~~~~~--~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~--~~~~  486 (499)
                      +++++...+.  ...+++++++++++.+.+..     .+.....++.|++.||+|||+      ++||.||+++  .++.
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~  192 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ  192 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTC
T ss_pred             EEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCe
Confidence            9999876321  33456777776555444332     223344556899999998875      8999999999  7889


Q ss_pred             eEEEEEEEeecc
Q 010856          487 VEVICFVFEILL  498 (499)
Q Consensus       487 ~~~~~f~~~~~~  498 (499)
                      ++++|||+++.+
T Consensus       193 ~kl~DFG~a~~~  204 (364)
T 3op5_A          193 VYLVDYGLAYRY  204 (364)
T ss_dssp             EEECCCTTCEES
T ss_pred             EEEEECCcceec
Confidence            999999998653

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.62  E-value=1.8e-16  Score=152.96  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             hcccc---cccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeee
Q 010856          362 EFSEN---NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       362 ~~~~~---~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~  436 (499)
                      +|+..   +.||+|+||.||+|+. .+++.||+|++...   ....+.+|+++++.+. ||||+++++++...+  ..++
T Consensus         9 ~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~--~~~l   83 (325)
T 3kn6_A            9 HYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQL--HTFL   83 (325)
T ss_dssp             HEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EEEE
T ss_pred             ccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCC--EEEE
Confidence            45543   7899999999999996 46899999999753   3467889999999997 999999999987633  4456


Q ss_pred             eecccCC-Ccccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC---CeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~f~~~~~  497 (499)
                      ++|++.| ++.+.+...    +.....++.|++.||+|||+      +++|.||++..++   .++++|||++..
T Consensus        84 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~  158 (325)
T 3kn6_A           84 VMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARL  158 (325)
T ss_dssp             EECCCCSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred             EEEccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence            7777755 444444322    22344556899999998876      8999999998765   799999998864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.62  E-value=2.1e-16  Score=149.49  Aligned_cols=137  Identities=17%  Similarity=0.057  Sum_probs=105.9

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcC-CCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..++|...+.||+|+||.||+|+.. +++.||+|++....  .....++.+|+..+..+ +||||+++++++...+  ..
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~--~~   86 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD--HM   86 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETT--EE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCC--eE
Confidence            4578999999999999999999974 79999999997653  33456788999999998 9999999999987633  44


Q ss_pred             eeeecccCC-Cccccccc--------cccccccccccccccceeecc------CCCcccEEEeeC---------------
Q 010856          435 LCLFHHSSA-SASASLVS--------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE---------------  484 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~---------------  484 (499)
                      ++++|++.| ++.+.+..        .+.....++.|++.||+|||+      +++|.||+++.+               
T Consensus        87 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~  166 (289)
T 1x8b_A           87 LIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDW  166 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-----------------
T ss_pred             EEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence            567777755 54444332        222344556899999998876      899999999743               


Q ss_pred             ----CCeEEEEEEEeec
Q 010856          485 ----PGVEVICFVFEIL  497 (499)
Q Consensus       485 ----~~~~~~~f~~~~~  497 (499)
                          ..++++|||.+..
T Consensus       167 ~~~~~~~kl~Dfg~~~~  183 (289)
T 1x8b_A          167 ASNKVMFKIGDLGHVTR  183 (289)
T ss_dssp             ---CCCEEECCCTTCEE
T ss_pred             cCCceEEEEcccccccc
Confidence                4799999998764

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.62  E-value=1.1e-16  Score=156.75  Aligned_cols=144  Identities=13%  Similarity=0.052  Sum_probs=100.1

Q ss_pred             HHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccc-
Q 010856          354 LELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITF-  431 (499)
Q Consensus       354 ~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~-  431 (499)
                      .......++|...+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|++.++.++||||+++++++...+. 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            44567778999999999999999999996 479999999986543 233567788888899999999999999865321 


Q ss_pred             ----ceeeeeecccCCCccccccc--------cccccccccccccccceeec--c------CCCcccEEEee-CCCeEEE
Q 010856          432 ----TVCLCLFHHSSASASASLVS--------SLTLSRPAKGGGFRGCVLWH--V------GVDFAAFVFVL-EPGVEVI  490 (499)
Q Consensus       432 ----~~~~~l~~~~~~~~~~~l~~--------~~~~~~~~~~~i~~gl~yLH--~------~~~p~~~l~~~-~~~~~~~  490 (499)
                          ...+++++++.+++...+..        .......++.|++.|++|||  +      ++||.||+++. ++.++++
T Consensus        95 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~  174 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLC  174 (360)
T ss_dssp             CTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEEC
T ss_pred             cccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEe
Confidence                22556788888875443221        11223344678899998888  4      89999999986 7899999


Q ss_pred             EEEEeecc
Q 010856          491 CFVFEILL  498 (499)
Q Consensus       491 ~f~~~~~~  498 (499)
                      |||+++..
T Consensus       175 Dfg~a~~~  182 (360)
T 3e3p_A          175 DFGSAKKL  182 (360)
T ss_dssp             CCTTCBCC
T ss_pred             eCCCceec
Confidence            99998653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.62  E-value=1e-16  Score=155.14  Aligned_cols=135  Identities=18%  Similarity=0.176  Sum_probs=101.4

Q ss_pred             hhcccccccccCCcceEEEEEeC-C----CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-D----RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~----~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..|...+.||+|+||.||+|+.. +    +..||+|+++... ......+.+|++++++++||||+++++++...  ...
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~  121 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY--KPM  121 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS--SSE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecC--CCc
Confidence            45777899999999999999853 2    3469999997654 23456789999999999999999999998653  344


Q ss_pred             eeeecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.++ +.+.+..     .+.....++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       122 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          122 MIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             EEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchh
Confidence            5677877664 4333322     122234456899999998876      8999999999999999999999865

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.62  E-value=1.4e-16  Score=150.76  Aligned_cols=133  Identities=22%  Similarity=0.244  Sum_probs=100.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc-------cHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR-------AFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~-------~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      .++|...+.||+|+||.||+|+. .+++.||+|++......       ..+.+.+|++++++++||||+++++++.... 
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   96 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-   96 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence            36799999999999999999996 57999999999654321       1267899999999999999999999886533 


Q ss_pred             ceeeeeecccC-CCcccccccc-----ccccccccccccccceeecc--------CCCcccEEEeeCCC-----eEEEEE
Q 010856          432 TVCLCLFHHSS-ASASASLVSS-----LTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVLEPG-----VEVICF  492 (499)
Q Consensus       432 ~~~~~l~~~~~-~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~~~~-----~~~~~f  492 (499)
                         .++++++. +++...+...     +.....++.|++.||+|||+        +++|.||++..++.     ++++||
T Consensus        97 ---~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Df  173 (287)
T 4f0f_A           97 ---RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADF  173 (287)
T ss_dssp             ---EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCC
T ss_pred             ---eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCC
Confidence               24666665 4443433221     22234456888888876655        67999999987766     999999


Q ss_pred             EEee
Q 010856          493 VFEI  496 (499)
Q Consensus       493 ~~~~  496 (499)
                      |++.
T Consensus       174 g~~~  177 (287)
T 4f0f_A          174 GLSQ  177 (287)
T ss_dssp             TTCB
T ss_pred             Cccc
Confidence            9875

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.62  E-value=1.1e-16  Score=153.01  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=98.9

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|+..+.||+|+||.||+|+. .++.||+|++...  ...+.+.+|++++++++||||+++++++..    ..++++|
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~lv~e   79 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN----PVCLVME   79 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT----TTEEEEE
T ss_pred             HhHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC----CcEEEEE
Confidence            35788999999999999999997 4678999998643  345789999999999999999999998753    2345677


Q ss_pred             ccCC-Cccccccccc-------cccccccccccccceeecc---------CCCcccEEEeeCCC-eEEEEEEEeec
Q 010856          440 HSSA-SASASLVSSL-------TLSRPAKGGGFRGCVLWHV---------GVDFAAFVFVLEPG-VEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~-~~~~~l~~~~-------~~~~~~~~~i~~gl~yLH~---------~~~p~~~l~~~~~~-~~~~~f~~~~~  497 (499)
                      ++.| .+.+.+....       .....++.|+++||+|||+         +++|.||+++.++. ++++|||++..
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~  155 (307)
T 2eva_A           80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACD  155 (307)
T ss_dssp             CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---
T ss_pred             cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccc
Confidence            7755 4433333221       1123345788999998876         79999999988876 69999998753

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.62  E-value=2.3e-16  Score=149.11  Aligned_cols=132  Identities=9%  Similarity=-0.086  Sum_probs=101.6

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCc---cHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGR---AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      +.|...+.||+|+||.||+|+.. +++.||+|++......   ..+.+.+|++++++++||||+++++++...+  ..++
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~~l  108 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRA--GGLV  108 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECC--cEEE
Confidence            56999999999999999999964 5899999999765422   2477999999999999999999999987633  4456


Q ss_pred             eecccCCCcccccccccc---ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEE
Q 010856          437 LFHHSSASASASLVSSLT---LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       437 l~~~~~~~~~~~l~~~~~---~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      ++||+.|+.+..+.....   ....++.|++.||+|||+      ++||.||++++++.++++++|.
T Consensus       109 v~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~  175 (286)
T 3uqc_A          109 VAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPAT  175 (286)
T ss_dssp             EEECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCC
T ss_pred             EEEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccc
Confidence            778876544333222111   123346899999999876      8999999999888888876553

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.62  E-value=3.7e-17  Score=156.00  Aligned_cols=139  Identities=16%  Similarity=0.163  Sum_probs=91.9

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ....++|...+.||+|+||.||+|+. .+++.||+|++.... ....+++.+|++++++++||||+++++++...+  ..
T Consensus        11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~   88 (303)
T 2vwi_A           11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD--EL   88 (303)
T ss_dssp             --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSS--CE
T ss_pred             ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC--Cc
Confidence            34457899999999999999999995 478999999986543 334567889999999999999999999987644  34


Q ss_pred             eeeecccCCC-cccccc------------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          435 LCLFHHSSAS-ASASLV------------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~------------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      +++++++.|+ +.+.+.            ........++.|++.||+|||+      +++|.||+++.++.++++|||++
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            5577777554 333332            1122334456899999998876      89999999999999999999986


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       169 ~~  170 (303)
T 2vwi_A          169 AF  170 (303)
T ss_dssp             HH
T ss_pred             he
Confidence            43

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.62  E-value=1.5e-16  Score=152.30  Aligned_cols=137  Identities=13%  Similarity=0.064  Sum_probs=104.9

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ..++|...+.||+|+||.||+|+.. +++.||+|++.....   ...+.+.+|++++++++||||+++++++...+  ..
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~--~~  109 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG--QL  109 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC--eE
Confidence            3577999999999999999999964 789999999975432   22467899999999999999999999987633  44


Q ss_pred             eeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.| .+.+.+..    .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       110 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~  183 (309)
T 2h34_A          110 YVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASA  183 (309)
T ss_dssp             EEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC---
T ss_pred             EEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcc
Confidence            557777765 44333322    222334556899999998876      8999999999999999999998753

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.62  E-value=7.7e-17  Score=152.97  Aligned_cols=138  Identities=12%  Similarity=0.102  Sum_probs=103.4

Q ss_pred             HHhhhccccc-ccccCCcceEEEEEe---CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          358 RATDEFSENN-LIGKGGFGSVYKARL---GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       358 ~~~~~~~~~~-~lg~G~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      .....|...+ .||+|+||.||+|..   .+++.||+|+++...  ....+.+.+|+++++.++||||+++++++..  .
T Consensus        13 ~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~   90 (291)
T 1xbb_A           13 LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--E   90 (291)
T ss_dssp             CCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES--S
T ss_pred             ecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--C
Confidence            3346788877 999999999999964   347889999997543  2235779999999999999999999998843  2


Q ss_pred             ceeeeeecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          432 TVCLCLFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       432 ~~~~~l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                       ..+++++++.++ +.+.+...    ......++.|++.||+|||+      +++|.||+++.++.++++|||++...
T Consensus        91 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~  167 (291)
T 1xbb_A           91 -SWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL  167 (291)
T ss_dssp             -SEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             -CcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence             334567777544 43333222    22234456899999998876      89999999999999999999987643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=4.9e-18  Score=151.56  Aligned_cols=112  Identities=21%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             cccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCc
Q 010856           74 TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDIL  153 (499)
Q Consensus        74 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~  153 (499)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.+| .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence            34444444444444444443 22 3444444444444444444 22333333444444444444444443 334444444


Q ss_pred             EEEcCCCcCCCCCc-ccccCCCCccEEEccCCccccc
Q 010856          154 NLNFSSNFLTSPLP-LEIGNLKVLIGIDFSMNNFSGV  189 (499)
Q Consensus       154 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  189 (499)
                      +|++++|.+++..+ ..+..+++|+.|++++|.+++.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            44444444443211 2344455555555555555433

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.61  E-value=2.2e-16  Score=152.20  Aligned_cols=136  Identities=15%  Similarity=0.145  Sum_probs=101.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--------ccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--------RAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      .++|...+.||+|+||.||+|+. .+++.||||++.....        .....+.+|++++++++||||+++++++...+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            46799999999999999999996 4689999999965421        12345889999999999999999999886533


Q ss_pred             cceeeeeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCC---eEEEEEEEee
Q 010856          431 FTVCLCLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG---VEVICFVFEI  496 (499)
Q Consensus       431 ~~~~~~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~---~~~~~f~~~~  496 (499)
                         .+++++++.+ ++.+.+....    .....++.|++.||+|||+      +++|.||+++.++.   ++++|||++.
T Consensus        89 ---~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           89 ---YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             ---EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             ---eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence               3456777755 4433333222    2233446899999998876      89999999987654   9999999886


Q ss_pred             cc
Q 010856          497 LL  498 (499)
Q Consensus       497 ~~  498 (499)
                      ..
T Consensus       166 ~~  167 (322)
T 2ycf_A          166 IL  167 (322)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.61  E-value=1.2e-16  Score=154.28  Aligned_cols=140  Identities=19%  Similarity=0.223  Sum_probs=107.3

Q ss_pred             HHhhhcccccccccCCcceEEEEEe--CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcC---CCCCccccceeEEcc-
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL--GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNI---RHRNLIKILHGVAVI-  429 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~--~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l---~H~niv~l~~~~~~~-  429 (499)
                      ...++|...+.||+|+||.||+|+.  .+|+.||+|++....  ......+.+|+++++.+   +||||+++++++... 
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            4557899999999999999999996  468899999996543  22234577888887765   899999999988631 


Q ss_pred             --ccceeeeeecccCCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          430 --TFTVCLCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       430 --~~~~~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                        +....+++++++.|++...+..      .......++.|++.||+|||+      +++|.||+++.++.++++|||++
T Consensus        88 ~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~  167 (326)
T 1blx_A           88 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  167 (326)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             cCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCccc
Confidence              2334566788888776554432      122234456899999998876      89999999999999999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       168 ~~  169 (326)
T 1blx_A          168 RI  169 (326)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.61  E-value=1.9e-16  Score=152.91  Aligned_cols=134  Identities=18%  Similarity=0.187  Sum_probs=101.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEE--EEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEV--AVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~v--avK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|...+.||+|+||.||+|+. .++..+  |+|.+.... ....+.+.+|+++++++ +||||+++++++...+  ..+
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~--~~~  102 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLY  102 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT--EEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC--ceE
Confidence            6789999999999999999995 456654  999987543 33456799999999999 9999999999987633  445


Q ss_pred             eeecccCC-Ccccccccc--------------------ccccccccccccccceeecc------CCCcccEEEeeCCCeE
Q 010856          436 CLFHHSSA-SASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVE  488 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~  488 (499)
                      +++|++.+ ++.+.+...                    +.....++.|+++||+|||+      +++|.||+++.++.++
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~k  182 (327)
T 1fvr_A          103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAK  182 (327)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEE
T ss_pred             EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEE
Confidence            67777754 444433221                    11233446899999998876      8999999999999999


Q ss_pred             EEEEEEee
Q 010856          489 VICFVFEI  496 (499)
Q Consensus       489 ~~~f~~~~  496 (499)
                      ++|||++.
T Consensus       183 L~Dfg~~~  190 (327)
T 1fvr_A          183 IADFGLSR  190 (327)
T ss_dssp             ECCTTCEE
T ss_pred             EcccCcCc
Confidence            99999876

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.61  E-value=2.6e-16  Score=147.65  Aligned_cols=135  Identities=19%  Similarity=0.196  Sum_probs=98.8

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC----CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|...+.||+|+||.||+|+. .++.||+|++....    ....+.+.+|+++++.++||||+++++++...+  ..+
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~   82 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP--NLC   82 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC----CE
T ss_pred             hhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC--ceE
Confidence            35789999999999999999997 47899999986543    223577899999999999999999999987633  345


Q ss_pred             eeecccCCCcccccccc----ccccccccccccccceeec---------cCCCcccEEEee--------CCCeEEEEEEE
Q 010856          436 CLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWH---------VGVDFAAFVFVL--------EPGVEVICFVF  494 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH---------~~~~p~~~l~~~--------~~~~~~~~f~~  494 (499)
                      ++++++.|+.+..+...    +.....++.|+++||+|||         .+++|.||++..        ++.++++|||+
T Consensus        83 lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~  162 (271)
T 3dtc_A           83 LVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL  162 (271)
T ss_dssp             EEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred             EEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence            67777765544433222    2223445688999999875         477999999975        67799999998


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      +..
T Consensus       163 ~~~  165 (271)
T 3dtc_A          163 ARE  165 (271)
T ss_dssp             ---
T ss_pred             ccc
Confidence            764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.61  E-value=1.3e-16  Score=150.59  Aligned_cols=136  Identities=18%  Similarity=0.217  Sum_probs=103.4

Q ss_pred             HhhhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ..++|...+.||+|+||.||+|+..    ++..||+|.+.... ....+.+.+|++++++++||||+++++++...  ..
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~   87 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE--PT   87 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS--SC
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC--CC
Confidence            4567999999999999999999852    23469999997653 23467799999999999999999999987542  22


Q ss_pred             eeeeecccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       +.+++++.+ ++.+.+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        88 -~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  162 (281)
T 3cc6_A           88 -WIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRY  162 (281)
T ss_dssp             -EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGC
T ss_pred             -EEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcc
Confidence             346666654 44333322     112233445799999998876      8999999999999999999998754

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.61  E-value=6.1e-17  Score=156.29  Aligned_cols=146  Identities=18%  Similarity=0.201  Sum_probs=110.8

Q ss_pred             cCHHHHHHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          351 FSYLELFRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      ++..++....+.|...+.||+|+||.||+|+. .+|+.||+|++.... ...+.+.+|+++++++ +||||+++++++..
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   92 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIK   92 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence            33444456678899999999999999999996 579999999997543 3457799999999998 89999999999876


Q ss_pred             cc----cceeeeeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEE
Q 010856          429 IT----FTVCLCLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVIC  491 (499)
Q Consensus       429 ~~----~~~~~~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~  491 (499)
                      ..    ....++++|++.+ .+.+.+..      .......++.|++.||+|||+      +++|.||+++.++.++++|
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~D  172 (326)
T 2x7f_A           93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVD  172 (326)
T ss_dssp             CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECC
T ss_pred             ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEee
Confidence            32    2344567788766 44333322      112233456899999999876      8999999999999999999


Q ss_pred             EEEeec
Q 010856          492 FVFEIL  497 (499)
Q Consensus       492 f~~~~~  497 (499)
                      ||++..
T Consensus       173 fg~~~~  178 (326)
T 2x7f_A          173 FGVSAQ  178 (326)
T ss_dssp             CTTTC-
T ss_pred             CcCcee
Confidence            998654

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.61  E-value=1.2e-16  Score=154.99  Aligned_cols=133  Identities=16%  Similarity=0.155  Sum_probs=101.8

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..++|...+.||+|+||+||+|+. .+|+.||+|++++...    ...+|++++.++ +||||+++++++...+  ..++
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~--~~~l   93 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGK--YVYV   93 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSS--EEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCC--EEEE
Confidence            457799999999999999999996 4689999999976542    245788888887 7999999999987633  4456


Q ss_pred             eecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCC----eEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG----VEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~----~~~~~f~~~~~  497 (499)
                      ++|++.| ++.+.+....    .....++.|++.||+|||+      ++||.||++.++++    ++++|||++..
T Consensus        94 v~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~  169 (342)
T 2qr7_A           94 VTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQ  169 (342)
T ss_dssp             EECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence            7777754 5444443322    2334456899999998876      89999999966543    99999998864

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.61  E-value=1.4e-16  Score=150.95  Aligned_cols=134  Identities=19%  Similarity=0.255  Sum_probs=98.7

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..++|+..+.||+|+||.||+|+..  ..||+|+++...  ....+.+.+|++++++++||||+++++++...   ...+
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~l   96 (289)
T 3og7_A           22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP---QLAI   96 (289)
T ss_dssp             CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEE
T ss_pred             CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCC---ccEE
Confidence            3467999999999999999999863  359999997554  23357799999999999999999999865432   2344


Q ss_pred             eecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++++.++ +...+..     .+.....++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  169 (289)
T 3og7_A           97 VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATE  169 (289)
T ss_dssp             EEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC----
T ss_pred             EEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceeccc
Confidence            66666544 3333321     112233456899999998876      8999999999999999999998753

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.60  E-value=1.7e-16  Score=159.01  Aligned_cols=135  Identities=19%  Similarity=0.187  Sum_probs=105.0

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC------CCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI------RHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l------~H~niv~l~~~~~~~~~~  432 (499)
                      ..+|...+.||+|+||+||+|+. .+++.||||++.... ...+.+.+|+++++.+      .|+||+++++++...  .
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~--~  172 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR--N  172 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET--T
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC--C
Confidence            35699999999999999999996 468999999997532 2345677888887765      677999999988763  3


Q ss_pred             eeeeeecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeCCC--eEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG--VEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~--~~~~~f~~~~~  497 (499)
                      ...++++++.+++.+.+...      +.....++.|++.||+|||+      ++||.||+++.++.  ++++|||++..
T Consensus       173 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~  251 (429)
T 3kvw_A          173 HICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCY  251 (429)
T ss_dssp             EEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             eEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeeccccee
Confidence            45567888887765554322      22345567899999998876      89999999988776  99999998754

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.60  E-value=2.5e-16  Score=149.91  Aligned_cols=138  Identities=15%  Similarity=0.177  Sum_probs=106.4

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---------ccHHHHHHHHHHHhcCC-CCCccccceeE
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---------RAFESFDVECEMMKNIR-HRNLIKILHGV  426 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---------~~~~~~~~E~~il~~l~-H~niv~l~~~~  426 (499)
                      ...++|...+.||+|+||.||+|+. .+|+.||+|+++....         ...+.+.+|+++++++. ||||+++++++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            3456799999999999999999996 4689999999975431         12456889999999995 99999999998


Q ss_pred             EccccceeeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          427 AVITFTVCLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       427 ~~~~~~~~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      ...  ...+++++++.+ .+.+.+..    .......++.|++.||+|||+      +++|.||+++.++.++++|||++
T Consensus        94 ~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  171 (298)
T 1phk_A           94 ETN--TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFS  171 (298)
T ss_dssp             ECS--SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             ccC--CeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccch
Confidence            763  344567777765 44333332    222334456899999998766      89999999999999999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       172 ~~  173 (298)
T 1phk_A          172 CQ  173 (298)
T ss_dssp             EE
T ss_pred             hh
Confidence            64

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.60  E-value=2.1e-16  Score=155.38  Aligned_cols=137  Identities=11%  Similarity=0.008  Sum_probs=93.3

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHH---HHHhcCCCCCccccc-------ee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVEC---EMMKNIRHRNLIKIL-------HG  425 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~---~il~~l~H~niv~l~-------~~  425 (499)
                      ...|...+.||+|+||.||+|+. .+|+.||+|++.....   ...+.+.+|+   ++++. +||||++++       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence            34588999999999999999996 4799999999987542   2345677885   55566 799988755       33


Q ss_pred             EEcccc---------------ceeeeeecccCCCcccccccc-----cccc------ccccccccccceeecc------C
Q 010856          426 VAVITF---------------TVCLCLFHHSSASASASLVSS-----LTLS------RPAKGGGFRGCVLWHV------G  473 (499)
Q Consensus       426 ~~~~~~---------------~~~~~l~~~~~~~~~~~l~~~-----~~~~------~~~~~~i~~gl~yLH~------~  473 (499)
                      +.....               ...++++||+.|++.+.+...     ....      ..++.|+++||+|||+      +
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD  219 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH  219 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence            322110               235667888887776655431     1112      2344899999998876      8


Q ss_pred             CCcccEEEeeCCCeEEEEEEEeec
Q 010856          474 VDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       474 ~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +||.||+++.++.++++|||+++.
T Consensus       220 ikp~NIll~~~~~~kL~DFG~a~~  243 (371)
T 3q60_A          220 FTPDNLFIMPDGRLMLGDVSALWK  243 (371)
T ss_dssp             CSGGGEEECTTSCEEECCGGGEEE
T ss_pred             CCHHHEEECCCCCEEEEecceeee
Confidence            999999999999999999999874

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.60  E-value=2.1e-16  Score=150.37  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=105.4

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|...+.||+|+||.||+|+. .+++.||+|++....  ..+.+.+|+++++.+ +|+|++++++++..  ....+++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~--~~~~~lv   84 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE--GLHNVLV   84 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE--TTEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCC--CceeEEE
Confidence            35699999999999999999995 579999999986543  234688999999999 89999999988865  3344567


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCC-----eEEEEEEEeec
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG-----VEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~-----~~~~~f~~~~~  497 (499)
                      ++++++++.+.+..     .......++.|++.||+|||+      +++|.||+++.++.     ++++|||+++.
T Consensus        85 ~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~  160 (298)
T 1csn_A           85 IDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  160 (298)
T ss_dssp             EECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             EEecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence            78776666554432     222344556899999998877      89999999987665     99999999864

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.60  E-value=3.1e-16  Score=150.51  Aligned_cols=135  Identities=16%  Similarity=0.160  Sum_probs=101.3

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..+.|...+.||+|+||.||+|... +|+.||+|.+....  ..+.+.+|++++++++||||+++++++...+  ..+++
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~lv  102 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNT--DLWIV  102 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCC--EEEEE
Confidence            4467999999999999999999964 69999999997643  3467999999999999999999999987633  44567


Q ss_pred             ecccCCCccc-ccc-----ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASA-SLV-----SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~-~l~-----~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.++.+. .+.     ........++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus       103 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  174 (314)
T 3com_A          103 MEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQ  174 (314)
T ss_dssp             EECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             eecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchh
Confidence            7877664333 222     1222234456889999998876      8999999999999999999998754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.60  E-value=2.4e-16  Score=166.35  Aligned_cols=138  Identities=13%  Similarity=0.090  Sum_probs=107.2

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcC-CCCCccccceeEEccccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFT  432 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~  432 (499)
                      ...++|...+.||+|+||+||+|+. .+++.||||++++..   ....+.+.+|.+++..+ +||+|+++++++...+  
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~--  415 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD--  415 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSS--
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCC--
Confidence            3457899999999999999999996 468999999997642   34457788999999987 7999999998876533  


Q ss_pred             eeeeeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++||+.| ++...+..    .+.....++.||+.||+|||+      ++||.|||++.++.++++|||++..
T Consensus       416 ~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~  491 (674)
T 3pfq_A          416 RLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE  491 (674)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEE
T ss_pred             EEEEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeec
Confidence            44557777755 44434332    222344556899999998876      8999999999999999999998763

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.60  E-value=8.7e-17  Score=155.73  Aligned_cols=140  Identities=16%  Similarity=0.103  Sum_probs=106.7

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeC-CC-----CEEEEEEeeccCC-ccHHHHHHHHHHHhcC-CCCCccccceeEE
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLG-DR-----MEVAVKVFNLQCG-RAFESFDVECEMMKNI-RHRNLIKILHGVA  427 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~-----~~vavK~~~~~~~-~~~~~~~~E~~il~~l-~H~niv~l~~~~~  427 (499)
                      +....++|...+.||+|+||.||+|... ++     ..||+|.+..... ...+.+.+|+++++++ +||||+++++++.
T Consensus        41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  120 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT  120 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            3445678999999999999999999953 23     4799999976542 3456799999999999 8999999999987


Q ss_pred             ccccceeeeeecccCC-Cccccccc------------------cccccccccccccccceeecc------CCCcccEEEe
Q 010856          428 VITFTVCLCLFHHSSA-SASASLVS------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV  482 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~~-~~~~~l~~------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~  482 (499)
                      ..+  ..+++++++.+ ++.+.+..                  .......++.|++.||+|||+      +++|.||+++
T Consensus       121 ~~~--~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~  198 (333)
T 2i1m_A          121 HGG--PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT  198 (333)
T ss_dssp             SSS--SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEE
T ss_pred             cCC--ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEEC
Confidence            633  34556777755 44333322                  111233445799999998876      8999999999


Q ss_pred             eCCCeEEEEEEEeec
Q 010856          483 LEPGVEVICFVFEIL  497 (499)
Q Consensus       483 ~~~~~~~~~f~~~~~  497 (499)
                      .++.++++|||+++.
T Consensus       199 ~~~~~kl~Dfg~~~~  213 (333)
T 2i1m_A          199 NGHVAKIGDFGLARD  213 (333)
T ss_dssp             GGGEEEBCCCGGGCC
T ss_pred             CCCeEEECccccccc
Confidence            999999999998764

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.60  E-value=3.5e-16  Score=151.02  Aligned_cols=145  Identities=9%  Similarity=0.049  Sum_probs=109.1

Q ss_pred             cCHHHHHHHhhhcccc-cccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcC-CCCCcccccee
Q 010856          351 FSYLELFRATDEFSEN-NLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNI-RHRNLIKILHG  425 (499)
Q Consensus       351 ~~~~~~~~~~~~~~~~-~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l-~H~niv~l~~~  425 (499)
                      ..++......+.|... +.||+|+||.||+|+.. +++.||+|++....  ......+.+|++++..+ +||||++++++
T Consensus        18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~   97 (327)
T 3lm5_A           18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV   97 (327)
T ss_dssp             CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred             hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            3444455556678777 88999999999999964 69999999997654  23367899999999998 56999999999


Q ss_pred             EEccccceeeeeecccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEee---CCCeEE
Q 010856          426 VAVITFTVCLCLFHHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEV  489 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~  489 (499)
                      +...+  ..++++|++.|+ +...+..      .+.....++.|++.||+|||+      +++|.||+++.   ++.+++
T Consensus        98 ~~~~~--~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL  175 (327)
T 3lm5_A           98 YENTS--EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKI  175 (327)
T ss_dssp             EECSS--EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEE
T ss_pred             EEeCC--eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEE
Confidence            87633  445567777554 4333321      112234456899999998866      89999999987   689999


Q ss_pred             EEEEEeec
Q 010856          490 ICFVFEIL  497 (499)
Q Consensus       490 ~~f~~~~~  497 (499)
                      +|||+++.
T Consensus       176 ~Dfg~a~~  183 (327)
T 3lm5_A          176 VDFGMSRK  183 (327)
T ss_dssp             CCGGGCEE
T ss_pred             eeCccccc
Confidence            99998865

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.60  E-value=2.1e-16  Score=165.63  Aligned_cols=129  Identities=13%  Similarity=0.117  Sum_probs=99.9

Q ss_pred             cccccCCcceEEEEEe---CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARL---GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||.||+|.+   .+++.||||+++...  ....+++.+|++++++++|||||++++++...   ..++++|++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~---~~~lv~E~~  451 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE---SWMLVMEMA  451 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS---SEEEEEECC
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CEEEEEEcc
Confidence            4799999999999964   346789999997643  23467899999999999999999999988642   234567777


Q ss_pred             CCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          442 SAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       442 ~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++ +.+.+...    +.....++.||+.||+|||+      ++||.||+++.++.++++|||+++.+
T Consensus       452 ~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~  519 (635)
T 4fl3_A          452 ELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL  519 (635)
T ss_dssp             TTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHT
T ss_pred             CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCcccc
Confidence            554 43333322    22234556899999999876      89999999999999999999987643

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.59  E-value=5.4e-16  Score=146.83  Aligned_cols=137  Identities=18%  Similarity=0.248  Sum_probs=106.2

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ..++|...+.||+|+||.||+|+.. +++.||+|++....  ....+.+.+|++++++++||||+++++++...  ...+
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   97 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS--SSFY   97 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--SEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCC--CeEE
Confidence            3467999999999999999999964 78999999997643  34567899999999999999999999998763  3445


Q ss_pred             eeecccCC-Cccccccc----cccccccccccccccceeecc------CCCcccEEEeeCC---CeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~f~~~~~  497 (499)
                      ++++++.+ .+.+.+..    .......++.|++.||+|||+      +++|.||+++.++   .++++|||++..
T Consensus        98 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A           98 IVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             EEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             EEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            56777754 44333322    222344556899999998876      8999999997543   699999998754

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.59  E-value=3.3e-16  Score=151.29  Aligned_cols=136  Identities=11%  Similarity=0.099  Sum_probs=103.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-ccHHHHHHHHH-HHhcCCCCCccccceeEEccccceeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-RAFESFDVECE-MMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~-il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .++|...+.||+|+||.||+|.. .+|+.||+|++..... ....++.+|+. +++.++||||+++++++...+  ..++
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~--~~~l   98 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG--DCWI   98 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS--EEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC--ceEE
Confidence            46788999999999999999996 4799999999976542 23445666766 778899999999999987643  4556


Q ss_pred             eecccCCCccccccc---------cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLVS---------SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~~---------~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++|++.+++...+..         .+.....++.|++.||+|||+       +++|.||+++.++.++++|||+++.
T Consensus        99 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~  175 (327)
T 3aln_A           99 CMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQ  175 (327)
T ss_dssp             EECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred             EEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence            788888765433321         122234456888898887765       7999999999999999999998754

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.59  E-value=4e-16  Score=151.81  Aligned_cols=138  Identities=12%  Similarity=0.018  Sum_probs=99.5

Q ss_pred             hhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccCCc-----------cHHHHHHHHHHHhcCCCCCcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQCGR-----------AFESFDVECEMMKNIRHRNLIKILHG  425 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~il~~l~H~niv~l~~~  425 (499)
                      ++|...+.||+|+||.||+|+..    ++..||+|++......           ..+.+.+|+.+++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            57999999999999999999964    5788999999765321           12347788999999999999999998


Q ss_pred             EEcc--ccceeeeeecccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCC--CeEEEE
Q 010856          426 VAVI--TFTVCLCLFHHSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP--GVEVIC  491 (499)
Q Consensus       426 ~~~~--~~~~~~~l~~~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~--~~~~~~  491 (499)
                      +...  +....++++|++++++.+.+...    +.....++.|++.||+|||+      +++|.||+++.++  .++++|
T Consensus       117 ~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~D  196 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLAD  196 (345)
T ss_dssp             EEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEECC
T ss_pred             cccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEe
Confidence            8762  12344557777766655444332    22344556899999998877      8999999998777  999999


Q ss_pred             EEEeecc
Q 010856          492 FVFEILL  498 (499)
Q Consensus       492 f~~~~~~  498 (499)
                      ||+++.+
T Consensus       197 fg~a~~~  203 (345)
T 2v62_A          197 YGLSYRY  203 (345)
T ss_dssp             CTTCEES
T ss_pred             CCCceec
Confidence            9998643

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.59  E-value=3.9e-16  Score=148.01  Aligned_cols=136  Identities=17%  Similarity=0.191  Sum_probs=103.2

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc--ccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI--TFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~--~~~~~~~  436 (499)
                      .|...+.||+|+||.||+|.. .++..||+|.+....  ....+.+.+|++++++++||||+++++++...  +....++
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            377788999999999999996 568899999997654  23456789999999999999999999988652  2233556


Q ss_pred             eecccCC-Cccccccc----cccccccccccccccceeecc--------CCCcccEEEe-eCCCeEEEEEEEeec
Q 010856          437 LFHHSSA-SASASLVS----SLTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFV-LEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~-~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~-~~~~~~~~~f~~~~~  497 (499)
                      +++++.+ .+.+.+..    .......++.|++.||+|||+        +++|.||+++ .++.++++|||++..
T Consensus       107 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~  181 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence            7788755 44333332    122234456888999987765        6799999997 678999999998754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.59  E-value=3.2e-16  Score=166.31  Aligned_cols=136  Identities=12%  Similarity=0.067  Sum_probs=105.0

Q ss_pred             hhcccccccccCCcceEEEEEeC--CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccc---ee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG--DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT---VC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~---~~  434 (499)
                      ++|.+.+.||+|+||.||+|+..  +|+.||||++.... ....+.+.+|++++++++|||||++++++...+..   ..
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            67999999999999999999964  68999999986543 23456789999999999999999999998764331   13


Q ss_pred             eeeecccCCCcccccc---ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++.|+.+....   ..+.....++.|++.||+|||+      ++||.||+++. +.++++|||++..
T Consensus       160 ~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~-~~~kl~DFG~a~~  230 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTE-EQLKLIDLGAVSR  230 (681)
T ss_dssp             EEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECS-SCEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeC-CcEEEEecccchh
Confidence            5678888765544332   1222344556899999998876      89999999976 5999999998764

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.59  E-value=2e-16  Score=152.76  Aligned_cols=136  Identities=15%  Similarity=0.178  Sum_probs=100.1

Q ss_pred             HhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      ..++|...+.||+|+||.||+|+.      .+++.||+|++.... .....++.+|+.++++++||||+++++++...+ 
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-  106 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL-  106 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC-
Confidence            346799999999999999999983      357799999997543 234567899999999999999999999987633 


Q ss_pred             ceeeeeecccC-CCccccccccc-----------cccccccccccccceeecc------CCCcccEEEeeC---CCeEEE
Q 010856          432 TVCLCLFHHSS-ASASASLVSSL-----------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE---PGVEVI  490 (499)
Q Consensus       432 ~~~~~l~~~~~-~~~~~~l~~~~-----------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~---~~~~~~  490 (499)
                       ..+++++++. +++.+.+....           .....++.|++.||+|||+      +++|.||+++.+   ..++++
T Consensus       107 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~  185 (327)
T 2yfx_A          107 -PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIG  185 (327)
T ss_dssp             -SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             -CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEEC
Confidence             3355677774 44444333211           1123346899999998876      899999999843   459999


Q ss_pred             EEEEee
Q 010856          491 CFVFEI  496 (499)
Q Consensus       491 ~f~~~~  496 (499)
                      |||+++
T Consensus       186 Dfg~~~  191 (327)
T 2yfx_A          186 DFGMAR  191 (327)
T ss_dssp             CCHHHH
T ss_pred             cccccc
Confidence            999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=5.6e-18  Score=151.17  Aligned_cols=132  Identities=19%  Similarity=0.272  Sum_probs=73.7

Q ss_pred             cccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCc
Q 010856          122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE  201 (499)
Q Consensus       122 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (499)
                      .+..+++|++|++++|+++.+| .+..+++|++|++++|.++. +|..+..+++|+.|++++|++++. | .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL-S-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCC
Confidence            4444445555555555554444 44444555555555555542 333444445566666666665542 2 455666677


Q ss_pred             eeeCcCCcCCCCCC-ccccCCCCCCEEeCCCCcCCccCcc----------cccCCCCCCEEEccCCcCc
Q 010856          202 YLFLGYNRLQGSIP-DSFGDLISLKFLNLSNNNLSGAIPA----------SLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       202 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~L~l~~N~l~  259 (499)
                      +|++++|++++..+ ..+..+++|+.|++++|++++..|.          .+..+++|+.||  +|+++
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            77777776664322 3566677777777777776654433          266677777765  55554

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=1.2e-15  Score=147.75  Aligned_cols=138  Identities=18%  Similarity=0.135  Sum_probs=102.8

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC--CCCCccccceeEEcccc--
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI--RHRNLIKILHGVAVITF--  431 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l--~H~niv~l~~~~~~~~~--  431 (499)
                      -....++|...+.||+|+||.||+|+.. ++.||||++...   ....+.+|.+++...  +||||+++++++.....  
T Consensus        32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~  107 (337)
T 3mdy_A           32 QRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSW  107 (337)
T ss_dssp             HTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred             ccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence            3445578999999999999999999974 889999999643   234556677766654  99999999998876421  


Q ss_pred             ceeeeeecccCC-Cccccccc---cccccccccccccccceeec--------------cCCCcccEEEeeCCCeEEEEEE
Q 010856          432 TVCLCLFHHSSA-SASASLVS---SLTLSRPAKGGGFRGCVLWH--------------VGVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       432 ~~~~~l~~~~~~-~~~~~l~~---~~~~~~~~~~~i~~gl~yLH--------------~~~~p~~~l~~~~~~~~~~~f~  493 (499)
                      ...++++|++.+ ++.+.+..   .+.....++.|++.||+|||              +++||.||+++.++.++++|||
T Consensus       108 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg  187 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  187 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCC
Confidence            345567788765 44443322   22223445688899988876              3699999999999999999999


Q ss_pred             Eeec
Q 010856          494 FEIL  497 (499)
Q Consensus       494 ~~~~  497 (499)
                      +++.
T Consensus       188 ~a~~  191 (337)
T 3mdy_A          188 LAVK  191 (337)
T ss_dssp             TCEE
T ss_pred             Ccee
Confidence            8754

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.58  E-value=1.2e-16  Score=153.30  Aligned_cols=145  Identities=14%  Similarity=0.156  Sum_probs=110.5

Q ss_pred             ccCHHHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCC--CCCcccccee
Q 010856          350 TFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIR--HRNLIKILHG  425 (499)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~--H~niv~l~~~  425 (499)
                      .+.++.+.....+|...+.||+|+||.||+|+..+++.||+|++....  ....+.+.+|++++++++  ||||++++++
T Consensus        17 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~   96 (313)
T 3cek_A           17 NLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY   96 (313)
T ss_dssp             ---CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEE
T ss_pred             CCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEE
Confidence            344444455567799999999999999999998789999999997654  234577899999999997  5999999999


Q ss_pred             EEccccceeeeeecccCCCccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEe
Q 010856          426 VAVITFTVCLCLFHHSSASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFE  495 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~  495 (499)
                      +...+  ..++++|+.++++.+.+....    .....++.|+++||+|||+      +++|.||+++ ++.++++|||++
T Consensus        97 ~~~~~--~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~  173 (313)
T 3cek_A           97 EITDQ--YIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIA  173 (313)
T ss_dssp             EECSS--EEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSS
T ss_pred             eecCC--EEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeecccc
Confidence            87643  345567777766655443322    2234456899999999876      8999999994 589999999987


Q ss_pred             ec
Q 010856          496 IL  497 (499)
Q Consensus       496 ~~  497 (499)
                      ..
T Consensus       174 ~~  175 (313)
T 3cek_A          174 NQ  175 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.58  E-value=5.4e-16  Score=153.83  Aligned_cols=133  Identities=11%  Similarity=0.088  Sum_probs=99.8

Q ss_pred             hhhcccc-cccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHh-cCCCCCccccceeEEcc--cccee
Q 010856          360 TDEFSEN-NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMK-NIRHRNLIKILHGVAVI--TFTVC  434 (499)
Q Consensus       360 ~~~~~~~-~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~-~l~H~niv~l~~~~~~~--~~~~~  434 (499)
                      .++|... +.||+|+||+||+|+. .+|+.||||+++.     ...+.+|++++. ..+||||+++++++...  +....
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence            3567665 6899999999999996 4799999999963     245778998874 56899999999987541  12334


Q ss_pred             eeeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeec
Q 010856          435 LCLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~  497 (499)
                      ++++||+.| ++.+.+..      .+.....++.|++.||+|||+      ++||.||+++.   ++.++++|||+++.
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~  213 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  213 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccc
Confidence            567777755 44444432      222344556899999999876      89999999987   67899999999864

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.58  E-value=5e-16  Score=155.90  Aligned_cols=131  Identities=13%  Similarity=0.048  Sum_probs=99.3

Q ss_pred             cccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeeeccc
Q 010856          363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      |...+.||+|+||+||.+...+|+.||||++...   ..+.+.+|+++++++ +|||||++++++...  ...++++|++
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~--~~~~lv~E~~   91 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTD--RFLYIALELC   91 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECS--SEEEEEECCC
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecC--CeEEEEEecC
Confidence            4456889999999998766668999999999753   245678999999876 899999999887653  3455678888


Q ss_pred             CCCcccccccccc-----------ccccccccccccceeecc------CCCcccEEEeeC-------------CCeEEEE
Q 010856          442 SASASASLVSSLT-----------LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-------------PGVEVIC  491 (499)
Q Consensus       442 ~~~~~~~l~~~~~-----------~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-------------~~~~~~~  491 (499)
                      +|++.+.+.....           ....++.|++.||+|||+      ++||.||+++.+             ..++++|
T Consensus        92 ~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~D  171 (434)
T 2rio_A           92 NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISD  171 (434)
T ss_dssp             SEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECC
T ss_pred             CCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcc
Confidence            7765554432211           112356899999999876      899999999754             3799999


Q ss_pred             EEEeecc
Q 010856          492 FVFEILL  498 (499)
Q Consensus       492 f~~~~~~  498 (499)
                      ||++..+
T Consensus       172 FG~a~~~  178 (434)
T 2rio_A          172 FGLCKKL  178 (434)
T ss_dssp             CTTCEEC
T ss_pred             cccceec
Confidence            9988653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.58  E-value=1.4e-15  Score=147.75  Aligned_cols=138  Identities=17%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhc--CCCCCccccceeEEcccc--
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKN--IRHRNLIKILHGVAVITF--  431 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~--l~H~niv~l~~~~~~~~~--  431 (499)
                      -....++|...+.||+|+||.||+|+. +|+.||+|++...   ..+.+.+|++++..  ++||||+++++++...+.  
T Consensus        37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~  112 (342)
T 1b6c_B           37 QRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW  112 (342)
T ss_dssp             HHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred             cccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence            344557899999999999999999998 5889999999643   34678889999887  799999999999876432  


Q ss_pred             ceeeeeecccCC-Cccccccc---cccccccccccccccceeec--------c------CCCcccEEEeeCCCeEEEEEE
Q 010856          432 TVCLCLFHHSSA-SASASLVS---SLTLSRPAKGGGFRGCVLWH--------V------GVDFAAFVFVLEPGVEVICFV  493 (499)
Q Consensus       432 ~~~~~l~~~~~~-~~~~~l~~---~~~~~~~~~~~i~~gl~yLH--------~------~~~p~~~l~~~~~~~~~~~f~  493 (499)
                      ...+++++++.+ ++.+.+..   .+.....++.|++.||+|||        +      +++|.||+++.++.++++|||
T Consensus       113 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg  192 (342)
T 1b6c_B          113 TQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  192 (342)
T ss_dssp             CCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             ceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECC
Confidence            244567777765 44443322   22223445689999999888        4      899999999999999999999


Q ss_pred             Eeec
Q 010856          494 FEIL  497 (499)
Q Consensus       494 ~~~~  497 (499)
                      +++.
T Consensus       193 ~~~~  196 (342)
T 1b6c_B          193 LAVR  196 (342)
T ss_dssp             TCEE
T ss_pred             Ccee
Confidence            8764

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=147.81  Aligned_cols=135  Identities=22%  Similarity=0.268  Sum_probs=99.2

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHH--HhcCCCCCccccceeEEcc---ccce
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEM--MKNIRHRNLIKILHGVAVI---TFTV  433 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~i--l~~l~H~niv~l~~~~~~~---~~~~  433 (499)
                      ..++|...+.||+|+||.||+|+. +++.||||++....   .+.+..|.++  +..++||||+++++++...   +...
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   86 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME   86 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence            356799999999999999999987 68899999997532   3445555555  4468999999999866432   2223


Q ss_pred             eeeeecccCC-Cccccccc---cccccccccccccccceeecc---------------CCCcccEEEeeCCCeEEEEEEE
Q 010856          434 CLCLFHHSSA-SASASLVS---SLTLSRPAKGGGFRGCVLWHV---------------GVDFAAFVFVLEPGVEVICFVF  494 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~---------------~~~p~~~l~~~~~~~~~~~f~~  494 (499)
                      .++++|++.+ ++.+.+..   .+.....++.|+++||+|||+               ++||.||+++.++.++++|||+
T Consensus        87 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~  166 (336)
T 3g2f_A           87 YLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGL  166 (336)
T ss_dssp             EEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccc
Confidence            4567788755 44433322   122234456889999988774               5899999999999999999999


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      +..
T Consensus       167 a~~  169 (336)
T 3g2f_A          167 SMR  169 (336)
T ss_dssp             CEE
T ss_pred             eee
Confidence            864

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.57  E-value=3.7e-16  Score=148.14  Aligned_cols=135  Identities=19%  Similarity=0.163  Sum_probs=96.3

Q ss_pred             hhhcccccccccCCcceEEEEEe--CCCC--EEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL--GDRM--EVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~--~~~~--~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .++|...+.||+|+||.||+|+.  .+++  .||+|+++...   ....+.+.+|++++++++||||+++++++...+  
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--   94 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP--   94 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC--
Confidence            35799999999999999999985  2333  68999987543   234578999999999999999999999887633  


Q ss_pred             eeeeeecccC-CCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSS-ASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~-~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ...+++++. +.+.+.+..     .......++.|++.||+|||+      +++|.||+++.++.++++|||++..
T Consensus        95 -~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  170 (291)
T 1u46_A           95 -MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA  170 (291)
T ss_dssp             -CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             -ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEcccccccc
Confidence             334566664 454443322     122334456899999998876      8999999999999999999998764

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.57  E-value=6e-16  Score=162.81  Aligned_cols=137  Identities=15%  Similarity=0.098  Sum_probs=104.5

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC----CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG----DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      ...++|...+.||+|+||.||+|+..    .+..||+|.++... ....+.+.+|+.++++++||||+++++++..  ..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~--~~  464 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--NP  464 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--SS
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec--Cc
Confidence            34467888999999999999999863    25679999987543 2335779999999999999999999998843  22


Q ss_pred             eeeeeecccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       .++++|++.+ ++.+.+...     +.....++.|++.||+|||+      +++|.||+++.++.++++|||+++.
T Consensus       465 -~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          465 -VWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             -CEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             -eEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCee
Confidence             3456777754 443333221     12233446899999999876      8999999999999999999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.57  E-value=3.3e-16  Score=155.41  Aligned_cols=125  Identities=15%  Similarity=0.169  Sum_probs=96.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC--------CCCccccceeEEcc-
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR--------HRNLIKILHGVAVI-  429 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~--------H~niv~l~~~~~~~-  429 (499)
                      .++|...+.||+|+||+||+|+. .+++.||+|++.... ...+.+.+|+++++.++        |+||+++++++... 
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            36799999999999999999995 578999999997432 33567889999999885        78899999988632 


Q ss_pred             -ccceeeeeecccCCCcccccccc------ccccccccccccccceeecc-------CCCcccEEEeeCC
Q 010856          430 -TFTVCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEP  485 (499)
Q Consensus       430 -~~~~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~  485 (499)
                       +....+++++++++++...+...      ......++.|++.||+|||+       ++||.||++..++
T Consensus       115 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~  184 (397)
T 1wak_A          115 VNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNE  184 (397)
T ss_dssp             TTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCH
T ss_pred             CCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccc
Confidence             23355668888888876654322      22344556899999988876       5899999998664

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.56  E-value=1.4e-15  Score=143.11  Aligned_cols=138  Identities=14%  Similarity=0.084  Sum_probs=101.5

Q ss_pred             CHHHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCC------------------ccHHHHHHHHHHHhc
Q 010856          352 SYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG------------------RAFESFDVECEMMKN  413 (499)
Q Consensus       352 ~~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~il~~  413 (499)
                      ....+......|...+.||+|+||.||+|+..+|+.||+|.++....                  .....+.+|++++++
T Consensus        81 ~l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~  160 (282)
T 1zar_A           81 SLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQK  160 (282)
T ss_dssp             HHHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence            34444555556777899999999999999997799999999964321                  124568999999999


Q ss_pred             CCCCCccccceeEEccccceeeeeecccCCCccccccccccccccccccccccceeecc------CCCcccEEEeeCCCe
Q 010856          414 IRHRNLIKILHGVAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGV  487 (499)
Q Consensus       414 l~H~niv~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~  487 (499)
                      ++  | +++.+++..   ...++++|++.|+.+..+..  .....++.|+++||+|||+      ++||.||+++ ++.+
T Consensus       161 l~--~-~~v~~~~~~---~~~~lvmE~~~g~~L~~l~~--~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~v  231 (282)
T 1zar_A          161 LQ--G-LAVPKVYAW---EGNAVLMELIDAKELYRVRV--ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGI  231 (282)
T ss_dssp             TT--T-SSSCCEEEE---ETTEEEEECCCCEEGGGCCC--SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEE
T ss_pred             cc--C-CCcCeEEec---cceEEEEEecCCCcHHHcch--hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcE
Confidence            98  5 666665533   22356788886654443422  2344567899999998765      8999999999 8999


Q ss_pred             EEEEEEEeecc
Q 010856          488 EVICFVFEILL  498 (499)
Q Consensus       488 ~~~~f~~~~~~  498 (499)
                      +++|||+++..
T Consensus       232 kl~DFG~a~~~  242 (282)
T 1zar_A          232 WIIDFPQSVEV  242 (282)
T ss_dssp             EECCCTTCEET
T ss_pred             EEEECCCCeEC
Confidence            99999998743

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=2.4e-14  Score=124.01  Aligned_cols=89  Identities=21%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             CCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEc
Q 010856          174 KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNL  253 (499)
Q Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  253 (499)
                      ++|+.|+|++|+|++..+..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34445555555555444555555555555555555555555555555666666666666666555555666666666666


Q ss_pred             cCCcCcccC
Q 010856          254 SFNKLEGEI  262 (499)
Q Consensus       254 ~~N~l~~~~  262 (499)
                      ++|++++..
T Consensus       110 ~~N~~~c~c  118 (170)
T 3g39_A          110 LNNPWDCAC  118 (170)
T ss_dssp             CSSCBCTTB
T ss_pred             CCCCCCCCc
Confidence            666665443

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.55  E-value=2.5e-16  Score=150.96  Aligned_cols=141  Identities=21%  Similarity=0.203  Sum_probs=97.2

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC------ccHHHHHHHHHHHhcC----CCCCcccccee
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG------RAFESFDVECEMMKNI----RHRNLIKILHG  425 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l----~H~niv~l~~~  425 (499)
                      ....++|...+.||+|+||.||+|+. .+++.||+|+++....      .....+.+|++++.++    +||||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            44557799999999999999999996 5789999999975432      1233466799998888    89999999998


Q ss_pred             EEccccceeeeeeccc-CCCccccccc----cccccccccccccccceeecc------CCCcccEEEe-eCCCeEEEEEE
Q 010856          426 VAVITFTVCLCLFHHS-SASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV-LEPGVEVICFV  493 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~-~~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~-~~~~~~~~~f~  493 (499)
                      +...+. .++++++++ ++++.+.+..    .+.....++.|++.||+|||+      +++|.||+++ .++.++++|||
T Consensus       107 ~~~~~~-~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg  185 (312)
T 2iwi_A          107 FETQEG-FMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFG  185 (312)
T ss_dssp             C------CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCS
T ss_pred             EecCCe-EEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcc
Confidence            866432 233333424 4444443332    222344456899999998876      8999999998 67889999999


Q ss_pred             Eeecc
Q 010856          494 FEILL  498 (499)
Q Consensus       494 ~~~~~  498 (499)
                      +++..
T Consensus       186 ~~~~~  190 (312)
T 2iwi_A          186 SGALL  190 (312)
T ss_dssp             SCEEC
T ss_pred             hhhhc
Confidence            87653

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.55  E-value=1.6e-15  Score=144.40  Aligned_cols=134  Identities=11%  Similarity=0.090  Sum_probs=101.1

Q ss_pred             hhhcccc-cccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHH-hcCCCCCccccceeEEc--ccccee
Q 010856          360 TDEFSEN-NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMM-KNIRHRNLIKILHGVAV--ITFTVC  434 (499)
Q Consensus       360 ~~~~~~~-~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il-~~l~H~niv~l~~~~~~--~~~~~~  434 (499)
                      .++|... +.||+|+||.||+|+. .+++.||+|+++.     ...+.+|++++ +..+||||+++++++..  .+....
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   90 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   90 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence            3567776 7899999999999996 5789999999964     24677899887 66799999999998864  112344


Q ss_pred             eeeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~~  498 (499)
                      +++++++.| ++.+.+..      .+.....++.|++.||+|||+      +++|.||+++.   ++.++++|||++...
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~  170 (299)
T 3m2w_A           91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET  170 (299)
T ss_dssp             EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred             EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccc
Confidence            567777755 54444332      122234456899999998876      89999999987   678999999988653

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.55  E-value=2.2e-16  Score=154.12  Aligned_cols=131  Identities=10%  Similarity=0.018  Sum_probs=99.6

Q ss_pred             hhcccccccccCCcceEEEEEeC---------CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccc----------
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG---------DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK----------  421 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~---------~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~----------  421 (499)
                      ++|...+.||+|+||.||+|+..         +++.||+|++...     +.+.+|++++++++||||++          
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            57999999999999999999964         3789999999754     46889999999999999998          


Q ss_pred             -----cceeEEccccceeeeeecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEEeeC
Q 010856          422 -----ILHGVAVITFTVCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE  484 (499)
Q Consensus       422 -----l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~  484 (499)
                           +++++... ....++++|++++++.+.+...      +.....++.|++.||+|||+      +++|.||+++.+
T Consensus       117 ~~i~~~~~~~~~~-~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~  195 (352)
T 2jii_A          117 LAIPTCMGFGVHQ-DKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPE  195 (352)
T ss_dssp             CSCCCCCEEEEET-TTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETT
T ss_pred             cCccchhhccccC-CcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCC
Confidence                 44455432 2344557777766655544322      22334456899999999876      899999999887


Q ss_pred             C--CeEEEEEEEeec
Q 010856          485 P--GVEVICFVFEIL  497 (499)
Q Consensus       485 ~--~~~~~~f~~~~~  497 (499)
                      +  .++++|||+++.
T Consensus       196 ~~~~~kl~Dfg~a~~  210 (352)
T 2jii_A          196 DQSQVTLAGYGFAFR  210 (352)
T ss_dssp             EEEEEEECCGGGCBC
T ss_pred             CCceEEEecCcceee
Confidence            7  899999999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=2.8e-14  Score=123.56  Aligned_cols=108  Identities=26%  Similarity=0.224  Sum_probs=95.5

Q ss_pred             cCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcC
Q 010856          128 SLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY  207 (499)
Q Consensus       128 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  207 (499)
                      ..+.+++++|+++.+|..+.  ++|++|+|++|.|+++.+..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45789999999999987663  8899999999999988888899999999999999999988888889999999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEeCCCCcCCcc
Q 010856          208 NRLQGSIPDSFGDLISLKFLNLSNNNLSGA  237 (499)
Q Consensus       208 n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  237 (499)
                      |++++..+..|..+++|+.|+|++|+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999988777899999999999999998744

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.55  E-value=8.2e-16  Score=153.93  Aligned_cols=134  Identities=15%  Similarity=0.123  Sum_probs=100.8

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..+|...+.||+|+||+||.....+|+.||||++.....   +.+.+|+++++++ +|||||++++++...+  ..++++
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~--~~~lv~   97 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQ--FQYIAI   97 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCC--EEEEEE
Confidence            345888899999999997655456889999999965432   2356899999998 8999999998887633  446678


Q ss_pred             cccCCCccccccccc-----cccccccccccccceeecc------CCCcccEEEeeC-----CCeEEEEEEEeecc
Q 010856          439 HHSSASASASLVSSL-----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-----PGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~~l~~~~-----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-----~~~~~~~f~~~~~~  498 (499)
                      |++.|++.+.+....     .....++.|+++||+|||+      ++||.||++..+     ..++++|||++..+
T Consensus        98 E~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~  173 (432)
T 3p23_A           98 ELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKL  173 (432)
T ss_dssp             ECCSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC
T ss_pred             ECCCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeec
Confidence            888877655543321     1223456899999999876      899999999532     25789999998753

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.54  E-value=1.7e-15  Score=145.56  Aligned_cols=137  Identities=10%  Similarity=0.055  Sum_probs=95.6

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCc-c-HHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGR-A-FESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~-~-~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ...++|...+.||+|+||.||+|+.. +|+.||+|++...... . .+.+..+..+++.++||||+++++++...+  ..
T Consensus        22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--~~   99 (318)
T 2dyl_A           22 AEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT--DV   99 (318)
T ss_dssp             CCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--EE
T ss_pred             hhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC--cE
Confidence            34577999999999999999999974 7999999999765422 2 233445556788899999999999987643  44


Q ss_pred             eeeecccCCCccccccc------cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++|++++ ....+..      .......++.|+++||+|||+       +++|.||+++.++.++++|||++..
T Consensus       100 ~lv~e~~~~-~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~  174 (318)
T 2dyl_A          100 FIAMELMGT-CAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGR  174 (318)
T ss_dssp             EEEECCCSE-EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC--
T ss_pred             EEEEeccCC-cHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchh
Confidence            567788743 3232221      122233456889999988875       6999999999999999999998753

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.54  E-value=2.1e-15  Score=152.59  Aligned_cols=135  Identities=17%  Similarity=0.138  Sum_probs=102.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|.+.+.||+|+||.||+|+. .+++.||||++.....  .+++.+|+++++.++|++.+..+.++... ....++++
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~-~~~~~lvm   82 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVE-GDYNVLVM   82 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEE-TTEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEee-CCEEEEEE
Confidence            36799999999999999999995 5799999999875542  24588999999999886666655555432 33445677


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEE---eeCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF---VLEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~---~~~~~~~~~~f~~~~~  497 (499)
                      +++++.+.+.+..     .+.....++.||+.||+|||+      ++||.||++   +.++.++++|||+++.
T Consensus        83 e~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~  155 (483)
T 3sv0_A           83 DLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK  155 (483)
T ss_dssp             ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             ECCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence            8887666554432     223344556899999998876      899999999   5778999999999864

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.54  E-value=1.1e-15  Score=145.35  Aligned_cols=136  Identities=16%  Similarity=0.128  Sum_probs=101.9

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ..++|...+.||+|+||.||+|+. .+++.||+|++.....  .+.+.+|+++++.++|++++..++++...+ ...+++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~-~~~~lv   83 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEG-DYNVMV   83 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEET-TEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCC-CceEEE
Confidence            446799999999999999999995 5789999998765432  245889999999999999998888775533 334557


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEE---eeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF---VLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~---~~~~~~~~~~f~~~~~  497 (499)
                      ++++++++.+.+..     .......++.|++.||+|||+      +++|.||++   ++++.++++|||+++.
T Consensus        84 ~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~  157 (296)
T 4hgt_A           84 MELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  157 (296)
T ss_dssp             EECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             EEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence            77776665554431     222344556899999998876      899999999   6788999999998864

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.54  E-value=1.8e-15  Score=143.79  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=105.2

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|...+.||+|+||.||+|+. .+|+.||+|++.....  .+.+.+|+++++.++|++++..++++...+ ...++++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~-~~~~lv~   84 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEG-DYNVMVM   84 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEET-TEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCC-CceEEEE
Confidence            46799999999999999999995 5799999999876442  346899999999999999888887765533 3445577


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEe---eCCCeEEEEEEEeec
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV---LEPGVEVICFVFEIL  497 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~---~~~~~~~~~f~~~~~  497 (499)
                      |++++++.+.+..     .......++.|++.||+|||+      +++|.||++.   +++.++++|||++..
T Consensus        85 e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~  157 (296)
T 3uzp_A           85 ELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  157 (296)
T ss_dssp             ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             EecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccc
Confidence            7776665554431     222334456899999999876      8999999994   778999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=4.8e-14  Score=122.56  Aligned_cols=104  Identities=26%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             CeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCc
Q 010856          130 RIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR  209 (499)
Q Consensus       130 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  209 (499)
                      +.+++++|+++.+|..+.  ++|++|+|++|.++++.+..|.++++|+.|+|++|+|+++.+..|..+++|++|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            455555555555554332  445555555555554444444444444444444444444333334444444444444444


Q ss_pred             CCCCCCccccCCCCCCEEeCCCCcCC
Q 010856          210 LQGSIPDSFGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       210 l~~~~~~~l~~l~~L~~L~l~~N~l~  235 (499)
                      |++..+..|..+++|+.|++++|++.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            44333333444444444444444443

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.53  E-value=5.7e-16  Score=160.59  Aligned_cols=138  Identities=16%  Similarity=0.145  Sum_probs=102.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcc----ccce
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVI----TFTV  433 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~----~~~~  433 (499)
                      .++|...+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++...    +...
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            47899999999999999999996 568999999987543 33456799999999999999999999886441    1223


Q ss_pred             eeeeecccCC-Cccccccc-------cccccccccccccccceeecc------CCCcccEEEeeCCC---eEEEEEEEee
Q 010856          434 CLCLFHHSSA-SASASLVS-------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG---VEVICFVFEI  496 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~-------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~---~~~~~f~~~~  496 (499)
                      .+++++++.| ++...+..       .+.....++.|++.||+|||+      +++|.||+++.+++   ++++|||++.
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~  172 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAK  172 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCC
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEccccccc
Confidence            4457777754 44333322       222334456899999999876      89999999987765   8999999986


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       173 ~  173 (676)
T 3qa8_A          173 E  173 (676)
T ss_dssp             B
T ss_pred             c
Confidence            5

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.53  E-value=4.6e-16  Score=149.59  Aligned_cols=139  Identities=17%  Similarity=0.252  Sum_probs=102.7

Q ss_pred             HHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc
Q 010856          354 LELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF  431 (499)
Q Consensus       354 ~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~  431 (499)
                      +++....++|...+.||+|+||.||+|+...  .||+|+++...  ....+.+.+|+.++++++||||+++++++...+ 
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-  102 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP-  102 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS-
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC-
Confidence            3344456789999999999999999998743  49999987543  233456889999999999999999999987643 


Q ss_pred             ceeeeeecccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          432 TVCLCLFHHSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       432 ~~~~~l~~~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                       ..+++++++.|+ +.+.+..     .......++.|++.||+|||+      +++|.||+++ ++.++++|||++..
T Consensus       103 -~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~  178 (319)
T 2y4i_B          103 -HLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSI  178 (319)
T ss_dssp             -CEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC-
T ss_pred             -ceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccc
Confidence             345567777544 3333322     122334456899999998876      8999999996 68999999998653

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.52  E-value=1.1e-15  Score=146.98  Aligned_cols=140  Identities=17%  Similarity=0.193  Sum_probs=104.3

Q ss_pred             HHHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc------cHHHHHHHHHHHhcCC--CCCccccceeEE
Q 010856          357 FRATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR------AFESFDVECEMMKNIR--HRNLIKILHGVA  427 (499)
Q Consensus       357 ~~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~il~~l~--H~niv~l~~~~~  427 (499)
                      ....++|...+.||+|+||.||+|+. .+++.||+|++......      ..+.+.+|++++++++  ||||+++++++.
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~  118 (320)
T 3a99_A           39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE  118 (320)
T ss_dssp             -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred             CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence            34456799999999999999999995 57899999999765321      2345778999999986  599999999987


Q ss_pred             ccccceeeeeecccC--CCccccccc----cccccccccccccccceeecc------CCCcccEEEe-eCCCeEEEEEEE
Q 010856          428 VITFTVCLCLFHHSS--ASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV-LEPGVEVICFVF  494 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~--~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~-~~~~~~~~~f~~  494 (499)
                      ..+  ..+++++++.  +++.+.+..    .......++.|++.||+|||+      +++|.||+++ +++.++++|||+
T Consensus       119 ~~~--~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~  196 (320)
T 3a99_A          119 RPD--SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS  196 (320)
T ss_dssp             CSS--EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             cCC--cEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence            643  3344555554  444333332    222334456899999998866      8999999998 678999999998


Q ss_pred             eecc
Q 010856          495 EILL  498 (499)
Q Consensus       495 ~~~~  498 (499)
                      +...
T Consensus       197 ~~~~  200 (320)
T 3a99_A          197 GALL  200 (320)
T ss_dssp             CEEC
T ss_pred             cccc
Confidence            7653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=7.7e-14  Score=121.24  Aligned_cols=109  Identities=23%  Similarity=0.266  Sum_probs=91.4

Q ss_pred             CcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCC
Q 010856          152 ILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN  231 (499)
Q Consensus       152 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  231 (499)
                      -+.+++++|.++. +|..+.  ++|+.|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3688999999875 444443  7889999999999988888899999999999999999987777788899999999999


Q ss_pred             CcCCccCcccccCCCCCCEEEccCCcCcccCC
Q 010856          232 NNLSGAIPASLEKLSYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       232 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  263 (499)
                      |+|++..+..|..+++|+.|++++|++.+..+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99997777778889999999999998886543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.51  E-value=2.1e-15  Score=146.15  Aligned_cols=135  Identities=16%  Similarity=0.188  Sum_probs=104.4

Q ss_pred             hhhcccccccccCCcceEEEEEe--CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCC------ccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL--GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN------LIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~n------iv~l~~~~~~~~~  431 (499)
                      .++|...+.||+|+||.||+|..  .+++.||+|+++... ...+.+.+|+++++.++|++      |+++++++...+ 
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~-   90 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG-   90 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT-
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC-
Confidence            35799999999999999999985  368899999997532 33567889999998877654      899998887633 


Q ss_pred             ceeeeeecccCCCccccccccc------cccccccccccccceeecc------CCCcccEEEee----------------
Q 010856          432 TVCLCLFHHSSASASASLVSSL------TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL----------------  483 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~~------~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~----------------  483 (499)
                       ..++++|++++++.+.+....      .....++.|++.||+|||+      +++|.||+++.                
T Consensus        91 -~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~  169 (339)
T 1z57_A           91 -HICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDER  169 (339)
T ss_dssp             -EEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEE
T ss_pred             -cEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccc
Confidence             455678888777665554322      2234456899999998876      89999999976                


Q ss_pred             ---CCCeEEEEEEEeec
Q 010856          484 ---EPGVEVICFVFEIL  497 (499)
Q Consensus       484 ---~~~~~~~~f~~~~~  497 (499)
                         ++.++++|||++..
T Consensus       170 ~~~~~~~kl~Dfg~~~~  186 (339)
T 1z57_A          170 TLINPDIKVVDFGSATY  186 (339)
T ss_dssp             EESCCCEEECCCSSCEE
T ss_pred             cccCCCceEeeCccccc
Confidence               55799999998764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.51  E-value=2.4e-15  Score=155.30  Aligned_cols=128  Identities=10%  Similarity=-0.041  Sum_probs=90.6

Q ss_pred             cccCCcceEEEEE-eCCCCEEEEEEeeccC----------CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceeee
Q 010856          369 IGKGGFGSVYKAR-LGDRMEVAVKVFNLQC----------GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       369 lg~G~~g~v~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      .+.|+.|.+..++ +-.|+.||||++.+..          ....++|.+|+++|+++ .|+||+++++++.+  ....++
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed--~~~~yL  319 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGEN--AQSGWL  319 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEEC--SSEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEE--CCEEEE
Confidence            5566666666555 2358899999997542          12346799999999999 79999999998876  335566


Q ss_pred             eecccCCCccc-cccccccc-cccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSSASASA-SLVSSLTL-SRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~~~~~-~l~~~~~~-~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++||+.|+.+. .+...... .++++.||+.||+|+|+      |+||+|||+++++.+|++|||+++.+
T Consensus       320 VMEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~  389 (569)
T 4azs_A          320 VMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTT  389 (569)
T ss_dssp             EEECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESC
T ss_pred             EEecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeC
Confidence            78888665444 33333222 34567899999999876      99999999999999999999998754

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.50  E-value=2.3e-15  Score=148.06  Aligned_cols=137  Identities=12%  Similarity=0.122  Sum_probs=103.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-----------CCCccccceeEE
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-----------HRNLIKILHGVA  427 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-----------H~niv~l~~~~~  427 (499)
                      .++|...+.||+|+||+||+|+. .+++.||+|++.... ...+.+.+|++++++++           ||||+++++++.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            35799999999999999999996 578999999997432 23567889999998876           899999999886


Q ss_pred             ccc--cceeeeeecccCCCccccccc------cccccccccccccccceeecc-------CCCcccEEEeeCC------C
Q 010856          428 VIT--FTVCLCLFHHSSASASASLVS------SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEP------G  486 (499)
Q Consensus       428 ~~~--~~~~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~------~  486 (499)
                      ..+  ....+++++++++++.+.+..      .......++.|++.||+|||+       +++|.||++..++      .
T Consensus        97 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~  176 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ  176 (373)
T ss_dssp             EEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEE
T ss_pred             ccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcce
Confidence            532  234566778887666554432      112234456888998888775       6999999996433      6


Q ss_pred             eEEEEEEEeec
Q 010856          487 VEVICFVFEIL  497 (499)
Q Consensus       487 ~~~~~f~~~~~  497 (499)
                      ++++|||++..
T Consensus       177 ~kl~Dfg~a~~  187 (373)
T 1q8y_A          177 IKIADLGNACW  187 (373)
T ss_dssp             EEECCCTTCEE
T ss_pred             EEEcccccccc
Confidence            99999998864

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.49  E-value=4.2e-15  Score=146.69  Aligned_cols=137  Identities=17%  Similarity=0.222  Sum_probs=104.0

Q ss_pred             HHhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CC-----CccccceeEEccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HR-----NLIKILHGVAVIT  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~-----niv~l~~~~~~~~  430 (499)
                      ...++|...+.||+|+||+||+|+. .+++.||||+++... ...+++.+|+++++.++ |+     +|+++++++...+
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            4457899999999999999999996 468899999997432 23466788999888774 55     4888888887633


Q ss_pred             cceeeeeecccCCCcccccccc------ccccccccccccccceeec--------cCCCcccEEEee--CCCeEEEEEEE
Q 010856          431 FTVCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWH--------VGVDFAAFVFVL--EPGVEVICFVF  494 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH--------~~~~p~~~l~~~--~~~~~~~~f~~  494 (499)
                        ...+++|++.+++.+.+...      +.....++.|++.||+|||        +++||.||++..  ++.++++|||+
T Consensus       130 --~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~  207 (382)
T 2vx3_A          130 --HLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGS  207 (382)
T ss_dssp             --EEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             --ceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence              45567888888766554322      2234455689999998886        389999999954  56799999999


Q ss_pred             eec
Q 010856          495 EIL  497 (499)
Q Consensus       495 ~~~  497 (499)
                      ++.
T Consensus       208 a~~  210 (382)
T 2vx3_A          208 SCQ  210 (382)
T ss_dssp             CEE
T ss_pred             cee
Confidence            864

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.49  E-value=2e-14  Score=147.70  Aligned_cols=126  Identities=12%  Similarity=-0.001  Sum_probs=88.1

Q ss_pred             ccccccccCCcceEEEEEeCCCCEEEEEEeeccCCc--------cHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          364 SENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR--------AFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ...+.||+|+||.||+|.. .++.+|+|+.......        ..+++.+|++++++++||||+++..++...+  ..+
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~--~~~  415 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD--NKR  415 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT--TTE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC--ccE
Confidence            4457899999999999954 5778999987543211        1355899999999999999996666555432  335


Q ss_pred             eeecccC-CCccccccccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSS-ASASASLVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~-~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++||+. +++.+.+..    ...++.|+++||+|||+      |+||.||++++  .++++|||+++..
T Consensus       416 lVmE~~~ggsL~~~l~~----~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~  479 (540)
T 3en9_A          416 IMMSYINGKLAKDVIED----NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKIS  479 (540)
T ss_dssp             EEEECCCSEEHHHHSTT----CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEEC
T ss_pred             EEEECCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEEC
Confidence            6778876 444333333    45667899999998876      89999999987  9999999998754

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.49  E-value=4.1e-15  Score=145.13  Aligned_cols=135  Identities=16%  Similarity=0.153  Sum_probs=104.3

Q ss_pred             hhhcccccccccCCcceEEEEEeC-CC-CEEEEEEeeccCCccHHHHHHHHHHHhcCCCCC------ccccceeEEcccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLG-DR-MEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN------LIKILHGVAVITF  431 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~n------iv~l~~~~~~~~~  431 (499)
                      .++|...+.||+|+||+||+|+.. ++ +.||+|+++... ...+.+.+|++++++++|++      ++.+++++.... 
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-   95 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG-   95 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT-
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC-
Confidence            367999999999999999999963 44 789999997532 33567889999999888766      888887776533 


Q ss_pred             ceeeeeecccCCCcccccccc------ccccccccccccccceeecc------CCCcccEEE------------------
Q 010856          432 TVCLCLFHHSSASASASLVSS------LTLSRPAKGGGFRGCVLWHV------GVDFAAFVF------------------  481 (499)
Q Consensus       432 ~~~~~l~~~~~~~~~~~l~~~------~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~------------------  481 (499)
                       ..++++|++++++...+...      ......++.|++.||+|||+      +++|.||++                  
T Consensus        96 -~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~  174 (355)
T 2eu9_A           96 -HMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEK  174 (355)
T ss_dssp             -EEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEE
T ss_pred             -eEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccccccccccccc
Confidence             45567888888776654322      22344556899999998877      899999999                  


Q ss_pred             -eeCCCeEEEEEEEeec
Q 010856          482 -VLEPGVEVICFVFEIL  497 (499)
Q Consensus       482 -~~~~~~~~~~f~~~~~  497 (499)
                       +.++.++++|||++..
T Consensus       175 ~~~~~~~kl~Dfg~~~~  191 (355)
T 2eu9_A          175 SVKNTSIRVADFGSATF  191 (355)
T ss_dssp             EESCCCEEECCCTTCEE
T ss_pred             ccCCCcEEEeecCcccc
Confidence             5678999999998764

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.48  E-value=5.4e-15  Score=147.36  Aligned_cols=139  Identities=12%  Similarity=-0.017  Sum_probs=96.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCC-CCcccccee--------
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRH-RNLIKILHG--------  425 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H-~niv~l~~~--------  425 (499)
                      ....|...+.||+|+||+||+|+. .+|+.||||++....   ....+.+.+|+.+++.++| +|......+        
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            345578889999999999999995 579999999987443   2235789999999999987 332221111        


Q ss_pred             -E------------Eccc---cceeeeeecccCCCcccccc-----------ccccccccccccccccceeecc------
Q 010856          426 -V------------AVIT---FTVCLCLFHHSSASASASLV-----------SSLTLSRPAKGGGFRGCVLWHV------  472 (499)
Q Consensus       426 -~------------~~~~---~~~~~~l~~~~~~~~~~~l~-----------~~~~~~~~~~~~i~~gl~yLH~------  472 (499)
                       +            ....   ....+.+++.+.+++.+.+.           ..+.....++.|+++||+|||+      
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHr  235 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  235 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence             1            0000   12334456666666554432           1112233445899999998876      


Q ss_pred             CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          473 GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       473 ~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+||.||+++.++.++++|||+++.
T Consensus       236 DiKp~NILl~~~~~~kL~DFG~a~~  260 (413)
T 3dzo_A          236 YLRPVDIVLDQRGGVFLTGFEHLVR  260 (413)
T ss_dssp             CCCGGGEEECTTCCEEECCGGGCEE
T ss_pred             CcccceEEEecCCeEEEEeccceee
Confidence            8999999999999999999999764

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.48  E-value=1.5e-14  Score=140.07  Aligned_cols=134  Identities=12%  Similarity=0.078  Sum_probs=95.8

Q ss_pred             Hhhhcccc-cccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHH-HHHhcCCCCCccccceeEEccc--cce
Q 010856          359 ATDEFSEN-NLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVEC-EMMKNIRHRNLIKILHGVAVIT--FTV  433 (499)
Q Consensus       359 ~~~~~~~~-~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~-~il~~l~H~niv~l~~~~~~~~--~~~  433 (499)
                      ..++|... +.||+|+||.||+|+.. +|+.||+|++....     ...+|+ ..++.+.||||+++++++....  ...
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  100 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRC  100 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence            44678884 46999999999999964 79999999996532     223333 3456779999999999886522  223


Q ss_pred             eeeeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeCC---CeEEEEEEEeec
Q 010856          434 CLCLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP---GVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~---~~~~~~f~~~~~  497 (499)
                      .++++|++.| ++.+.+..      .+.....++.|++.||+|||+      +++|.||+++.++   .++++|||++..
T Consensus       101 ~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~  180 (336)
T 3fhr_A          101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKE  180 (336)
T ss_dssp             EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEecccccee
Confidence            4557777765 44443322      122334456899999999876      8999999997644   499999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.46  E-value=1.2e-12  Score=129.51  Aligned_cols=244  Identities=16%  Similarity=0.103  Sum_probs=157.8

Q ss_pred             CCCCCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCC---------------
Q 010856            1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN---------------   65 (499)
Q Consensus         1 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------   65 (499)
                      |.+|++|+++.+.. .++.+... +|.++. +|+.+++..+ ++.+...+|.++++|+.+.+..+               
T Consensus        67 F~~c~~L~~i~lp~-~i~~I~~~-aF~~c~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           67 FQGCRKVTEIKIPS-TVREIGEF-AFENCS-KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTCTTEEEEECCT-TCCEECTT-TTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred             hhCCCCceEEEeCC-CccCcchh-HhhCCC-CCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence            56788999999974 47766554 788887 8999999755 66677778888888877766533               


Q ss_pred             ------cCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccC-
Q 010856           66 ------KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNK-  138 (499)
Q Consensus        66 ------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-  138 (499)
                            .+..+...+|.++++|+.+.+.++. ..+....|.++.+|+.+++..+ ++.+...+|.++..|+.+.+..+. 
T Consensus       143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~  220 (394)
T 4fs7_A          143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY  220 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred             ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence                  1112334567888899999997654 3366677888889999988766 555666677777777776664431 


Q ss_pred             -----------CCC--CC--------ccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCC
Q 010856          139 -----------LTS--VP--------LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGL  197 (499)
Q Consensus       139 -----------l~~--~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (499)
                                 ++.  +|        ..+..+..|+.+.+..+... +....|..+..++.+....+.+.   ...|.++
T Consensus       221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~  296 (394)
T 4fs7_A          221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGC  296 (394)
T ss_dssp             EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTC
T ss_pred             EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccc
Confidence                       111  12        24566788888888776432 44556666666666665554332   2345556


Q ss_pred             cCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCC
Q 010856          198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN  256 (499)
Q Consensus       198 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  256 (499)
                      .+|+.+.+..+ ++.+....|.++.+|+.+++.++ ++.+...+|.++++|+.+++..|
T Consensus       297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            66666666543 44455555666666666666533 55555556666666666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.44  E-value=3.2e-12  Score=126.52  Aligned_cols=251  Identities=14%  Similarity=0.077  Sum_probs=172.0

Q ss_pred             CCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccc-------
Q 010856           17 LDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDN-------   89 (499)
Q Consensus        17 l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------   89 (499)
                      ++.+... +|.++. +|+++.+.. .++.+...+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+       
T Consensus        59 VtsIg~~-AF~~c~-~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYA-AFQGCR-KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVE  134 (394)
T ss_dssp             EEEECTT-TTTTCT-TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred             EeEhHHH-HhhCCC-CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecce
Confidence            4444444 787777 899999975 488788889999999999999865 66677788999888888776533       


Q ss_pred             --------------cccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCC-ccccCCCCCcE
Q 010856           90 --------------KLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-LTFWNLKDILN  154 (499)
Q Consensus        90 --------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~  154 (499)
                                    .+......+|.++++|+.+.+.++. ..+....|.++.+|+.+.+..+ ++.++ ..+.++..|+.
T Consensus       135 aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             eeecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence                          1112234568888999999997654 4477789999999999999876 44432 24555555555


Q ss_pred             EEcCCCc---------------------CCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCC
Q 010856          155 LNFSSNF---------------------LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS  213 (499)
Q Consensus       155 L~l~~n~---------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  213 (499)
                      +.+..+.                     ++.+....|..+..|+.+.+..+... +....|..+..++.+....+.+   
T Consensus       213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---  288 (394)
T 4fs7_A          213 MEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---  288 (394)
T ss_dssp             CCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---
T ss_pred             eecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---
Confidence            5444332                     12233345556666676666655432 5556666777777776665543   


Q ss_pred             CCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCC-CCCCCccccccCCC
Q 010856          214 IPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSAESFEGN  279 (499)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~l~~N  279 (499)
                      ....|..+.+|+.+.+.++ ++.+...+|.++++|+.+++..+ ++..-... ....+|+.+.+..|
T Consensus       289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            3356888999999999765 77777889999999999999754 55333222 22345666666444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.43  E-value=1.5e-15  Score=148.64  Aligned_cols=181  Identities=17%  Similarity=0.123  Sum_probs=100.4

Q ss_pred             CCCCeEecccccccccCCccccC-----cccccEEeeecCCCCCcCCccc-cCCccCCeeeccccCCCCCC-----ccc-
Q 010856           79 QKLQGLGLEDNKLEGSIPDDICH-----LAELYRLDLDGNKLSGSLPACF-SNLTSLRIVSLGSNKLTSVP-----LTF-  146 (499)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-----~~~-  146 (499)
                      +.|+.|+|++|.++......+..     .++|++|+|++|.++......+ ..+++|+.|+|++|.+++..     ..+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            34555555555554332222221     1455555555555543222222 22345666666666665421     111 


Q ss_pred             cCCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCcccccC----cccccCCcCCceeeCcCCcCCCCC----
Q 010856          147 WNLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLQGSI----  214 (499)
Q Consensus       147 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~----  214 (499)
                      ...++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++..    +..+...++|++|+|++|.|++..    
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2346677777777766542    2233456677777777777776432    445666778888888888887532    


Q ss_pred             CccccCCCCCCEEeCCCCcCCccCcccccCCCC-----CCEEE--ccCCcCc
Q 010856          215 PDSFGDLISLKFLNLSNNNLSGAIPASLEKLSY-----LENLN--LSFNKLE  259 (499)
Q Consensus       215 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-----L~~L~--l~~N~l~  259 (499)
                      ...+...++|+.|+|++|.|+......+..+..     |+.+.  +..|.++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            234556788999999999988655555544321     55665  5666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.41  E-value=5.5e-15  Score=144.59  Aligned_cols=159  Identities=19%  Similarity=0.180  Sum_probs=121.6

Q ss_pred             cccccEEeeecCCCCCcCCccccC-----CccCCeeeccccCCCC--CCccccCCCCCcEEEcCCCcCCCCCcccc----
Q 010856          102 LAELYRLDLDGNKLSGSLPACFSN-----LTSLRIVSLGSNKLTS--VPLTFWNLKDILNLNFSSNFLTSPLPLEI----  170 (499)
Q Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----  170 (499)
                      ++.|++|+|++|.++......+..     .++|+.|+|++|.++.  +..-...+++|+.|+|++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467999999999998644443332     3699999999999976  22223345689999999999976443333    


Q ss_pred             -cCCCCccEEEccCCccccc----CcccccCCcCCceeeCcCCcCCCCC----CccccCCCCCCEEeCCCCcCCccC---
Q 010856          171 -GNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGSI----PDSFGDLISLKFLNLSNNNLSGAI---  238 (499)
Q Consensus       171 -~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~N~l~~~~---  238 (499)
                       ...++|+.|+|++|.++..    ++..+..+++|++|+|++|.+++..    ...+...++|+.|+|++|.|++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3568899999999999753    3344577899999999999998532    455677889999999999998543   


Q ss_pred             -cccccCCCCCCEEEccCCcCcc
Q 010856          239 -PASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       239 -~~~~~~l~~L~~L~l~~N~l~~  260 (499)
                       ...+...++|++|+|++|+|+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence             3445567999999999999874

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.40  E-value=4.6e-14  Score=131.11  Aligned_cols=131  Identities=12%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCE--EEEEEeeccCCc------------------------cHHHHHHHHHHHhcC
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRME--VAVKVFNLQCGR------------------------AFESFDVECEMMKNI  414 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~il~~l  414 (499)
                      -|...+.||+|+||.||+|.. .+|+.  ||||+++.....                        ....+.+|++++.++
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            366788999999999999997 68888  999997543210                        013688999999999


Q ss_pred             CCCCccccceeEEccccceeeeeecccCC-C-cccccc---cc--ccccccccccccccceeec-c------CCCcccEE
Q 010856          415 RHRNLIKILHGVAVITFTVCLCLFHHSSA-S-ASASLV---SS--LTLSRPAKGGGFRGCVLWH-V------GVDFAAFV  480 (499)
Q Consensus       415 ~H~niv~l~~~~~~~~~~~~~~l~~~~~~-~-~~~~l~---~~--~~~~~~~~~~i~~gl~yLH-~------~~~p~~~l  480 (499)
                      .|+++.-..-+..    ...++++||+++ + ....+.   ..  ......++.|++.||+||| +      |++|.||+
T Consensus       128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NIL  203 (258)
T 1zth_A          128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIM  203 (258)
T ss_dssp             HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEE
T ss_pred             HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEE
Confidence            9887532221111    123457777743 1 111111   11  2233455688888888888 4      89999999


Q ss_pred             EeeCCCeEEEEEEEeecc
Q 010856          481 FVLEPGVEVICFVFEILL  498 (499)
Q Consensus       481 ~~~~~~~~~~~f~~~~~~  498 (499)
                      +.+  .+++||||+++..
T Consensus       204 l~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          204 YID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             ESS--SEEECCCTTCEET
T ss_pred             EcC--cEEEEECcccccC
Confidence            977  9999999998753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=8.5e-13  Score=128.32  Aligned_cols=103  Identities=19%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             eeecccc-CCCCCCccccCCCCCcEEEcCC-CcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCC
Q 010856          131 IVSLGSN-KLTSVPLTFWNLKDILNLNFSS-NFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN  208 (499)
Q Consensus       131 ~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  208 (499)
                      .++++++ +++.+|. +..+++|+.|+|++ |.++++.+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3455555 5666665 66666666666664 6666555555666666666666666666665656666666666666666


Q ss_pred             cCCCCCCccccCCCCCCEEeCCCCcCC
Q 010856          209 RLQGSIPDSFGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       209 ~l~~~~~~~l~~l~~L~~L~l~~N~l~  235 (499)
                      +|+++.+..|..++ |+.|+|.+|++.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            66655444454444 666666666655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=3.6e-11  Score=118.89  Aligned_cols=247  Identities=13%  Similarity=0.154  Sum_probs=134.0

Q ss_pred             CCCCC-CCCEEECcCCCCCccCChhccccccccccEEEcccCC---CcccCCccccCCCCCCEEeccCCcCCccCCcccc
Q 010856            1 MSNCK-SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCN---ISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLS   76 (499)
Q Consensus         1 l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   76 (499)
                      |.+++ .|+.+.+..+ ++.+... +|.++. +|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++.+...+|.
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~-AF~~C~-~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSN-AFYNCT-SLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTT-TTTTCT-TCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHH-HhhCCc-cCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            34553 5888888754 6656555 777777 78888887653   66666777888888888777654 4546666777


Q ss_pred             CCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccc----------------------cCCccCCeeec
Q 010856           77 KLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACF----------------------SNLTSLRIVSL  134 (499)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------------------~~l~~L~~L~L  134 (499)
                      .+.+|+.+.+..+ +..+....|....+|+.+.+..+ ++.+...+|                      ..+.+++....
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecc
Confidence            7778887777643 33344556666666666666543 222333333                      33333333322


Q ss_pred             cccCCCC-----------------------------CC--------ccccCCCCCcEEEcCCCcCCCCCcccccCCCCcc
Q 010856          135 GSNKLTS-----------------------------VP--------LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLI  177 (499)
Q Consensus       135 ~~n~l~~-----------------------------~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  177 (499)
                      ..+....                             +|        ..|.++..|+.+.+..+.. .+....|.+++.|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~  291 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQ  291 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCC
T ss_pred             cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccc
Confidence            2211111                             11        1233444555555543322 23344455555555


Q ss_pred             EEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCc
Q 010856          178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNK  257 (499)
Q Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  257 (499)
                      .+.+. +.++.+....|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.+|.
T Consensus       292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          292 DIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             cccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            55553 2344444455555555555555433 44344455555555555555432 444445555555555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=9.8e-13  Score=127.88  Aligned_cols=131  Identities=23%  Similarity=0.198  Sum_probs=106.0

Q ss_pred             cEEEcCCC-cCCCCCcccccCCCCccEEEccC-CcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCC
Q 010856          153 LNLNFSSN-FLTSPLPLEIGNLKVLIGIDFSM-NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLS  230 (499)
Q Consensus       153 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  230 (499)
                      ..++++++ .++. +|. +..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|+++.+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35788888 8986 555 99999999999996 99999988999999999999999999999999999999999999999


Q ss_pred             CCcCCccCcccccCCCCCCEEEccCCcCcccCCCCC--CCCCccccccCCCcCCCCCC
Q 010856          231 NNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG--SFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       231 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~l~~~~l~~N~~~c~~~  286 (499)
                      +|+|++..+..|..++ |+.|+|.+|++.+......  .+.......+..+...|..+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            9999988888887776 9999999999986543211  01111223344566677654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.32  E-value=9.1e-11  Score=115.99  Aligned_cols=131  Identities=15%  Similarity=0.145  Sum_probs=99.3

Q ss_pred             ccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCc---CCccCCccccCCCCCCeEecccccccccCCccccC
Q 010856           25 SVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNK---LNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICH  101 (499)
Q Consensus        25 ~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  101 (499)
                      +|.+....|+.+.+-.+ ++.+...+|.++++|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++.+....|..
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            66665436999999754 777888999999999999998874   77677889999999999988765 55566778999


Q ss_pred             cccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCC
Q 010856          102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSS  159 (499)
Q Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~  159 (499)
                      +.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+....+...+|+.+.+..
T Consensus       136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~  191 (394)
T 4gt6_A          136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA  191 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT
T ss_pred             hcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECC
Confidence            999999999754 45477788999999999988654 444433333334555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.15  E-value=2e-09  Score=105.74  Aligned_cols=107  Identities=14%  Similarity=0.062  Sum_probs=56.9

Q ss_pred             ccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCC
Q 010856          146 FWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLK  225 (499)
Q Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  225 (499)
                      +....+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++.+....|.++++|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            334455555555433 33334445555566666665544 44444455555556666655432 3334445555566666


Q ss_pred             EEeCCCCcCCccCcccccCCCCCCEEEccC
Q 010856          226 FLNLSNNNLSGAIPASLEKLSYLENLNLSF  255 (499)
Q Consensus       226 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  255 (499)
                      .+.+.++.++.+...+|.++.+|+.+++..
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCc
Confidence            666655555555555566666666666543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.08  E-value=9e-12  Score=120.39  Aligned_cols=142  Identities=11%  Similarity=-0.030  Sum_probs=87.0

Q ss_pred             HHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCC--------------ccHHHHHHHHHHHhcCCCCCc
Q 010856          354 LELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG--------------RAFESFDVECEMMKNIRHRNL  419 (499)
Q Consensus       354 ~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~--------------~~~~~~~~E~~il~~l~H~ni  419 (499)
                      ..+...-.-|.+...||+|+||.||+|..++|+.||||+++....              ........++++.....|+|+
T Consensus        88 ~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL  167 (397)
T 4gyi_A           88 HTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFM  167 (397)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            444444445889999999999999999988899999999854210              111222333333333334444


Q ss_pred             cccceeEEc----cccceeeeeecccCCCccccccccccccccccccccccceeecc------CCCcccEEEeeCC----
Q 010856          420 IKILHGVAV----ITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP----  485 (499)
Q Consensus       420 v~l~~~~~~----~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~----  485 (499)
                      ++++.....    .+.....++++++.|.....+.. ....+.+..|++.||.|||+      |+||.|||+.+++    
T Consensus       168 ~rL~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~~-~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d  246 (397)
T 4gyi_A          168 KALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSS-VPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAED  246 (397)
T ss_dssp             HHHHHTTCSCCCEEEEETTEEEEECCSCEEGGGCCC-CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSC
T ss_pred             HHHHhcCCCCCeeeeccCceEEEEecCCccHhhhcc-cHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCccc
Confidence            433321110    01112246788887765444332 22234455788888877655      8999999998765    


Q ss_pred             ------CeEEEEEEEee
Q 010856          486 ------GVEVICFVFEI  496 (499)
Q Consensus       486 ------~~~~~~f~~~~  496 (499)
                            ++.+|||+-++
T Consensus       247 ~~~~~~~~~iID~~Q~V  263 (397)
T 4gyi_A          247 PSSITLTPIIIXFPQMV  263 (397)
T ss_dssp             TTSEEEEEEECCCTTCE
T ss_pred             ccccccceEEEEeCCcc
Confidence                  38899998554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.08  E-value=2.2e-11  Score=117.98  Aligned_cols=154  Identities=17%  Similarity=0.128  Sum_probs=88.3

Q ss_pred             ccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCC-Cccc--cCCCCCcEEEcCC--CcCC-CC----Ccc
Q 010856           99 ICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTF--WNLKDILNLNFSS--NFLT-SP----LPL  168 (499)
Q Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~--~~l~~L~~L~l~~--n~l~-~~----~~~  168 (499)
                      +..+++|+.|+|++|.-... +. +. +++|+.|++..|.++.- ...+  ..+|+|++|+|+.  |... +.    +..
T Consensus       168 l~~~P~L~~L~L~g~~~l~l-~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSI-GK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBC-CS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCcee-cc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            34455555565555521111 11 22 45666666666555431 1112  2456666666532  1111 10    001


Q ss_pred             cc--cCCCCccEEEccCCcccccCccccc---CCcCCceeeCcCCcCCCCC----CccccCCCCCCEEeCCCCcCCccCc
Q 010856          169 EI--GNLKVLIGIDFSMNNFSGVIPTEIG---GLKNLEYLFLGYNRLQGSI----PDSFGDLISLKFLNLSNNNLSGAIP  239 (499)
Q Consensus       169 ~~--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~N~l~~~~~  239 (499)
                      .+  ..+++|+.|+|.+|.+.+..+..+.   .+++|++|+|+.|.+++..    +..+..+++|+.|++++|.|+....
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            12  2467888888888887643333332   4788999999999888642    2333556899999999999886555


Q ss_pred             ccccC-CCCCCEEEccCCc
Q 010856          240 ASLEK-LSYLENLNLSFNK  257 (499)
Q Consensus       240 ~~~~~-l~~L~~L~l~~N~  257 (499)
                      ..+.. +  ...+++++++
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            54543 3  4678998887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.01  E-value=9.2e-11  Score=113.68  Aligned_cols=159  Identities=16%  Similarity=0.153  Sum_probs=105.6

Q ss_pred             cCcccccEEeeecCCCC---------CcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccc
Q 010856          100 CHLAELYRLDLDGNKLS---------GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEI  170 (499)
Q Consensus       100 ~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  170 (499)
                      ..+++|+.|.+.++...         +.+...+..+|+|+.|++++|.-..++. + .+++|+.|++..+.++......+
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            34566666666544321         1233455678999999999884233443 3 37899999999988764332333


Q ss_pred             c--CCCCccEEEccC--Cccccc-----Ccccc--cCCcCCceeeCcCCcCCCCCCccc---cCCCCCCEEeCCCCcCCc
Q 010856          171 G--NLKVLIGIDFSM--NNFSGV-----IPTEI--GGLKNLEYLFLGYNRLQGSIPDSF---GDLISLKFLNLSNNNLSG  236 (499)
Q Consensus       171 ~--~l~~L~~L~l~~--n~l~~~-----~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~N~l~~  236 (499)
                      .  .+++|+.|+|+.  |...+.     +...+  ..+++|+.|+|++|.+.+..+..+   ..+++|+.|+|+.|.+.+
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            3  689999999863  221111     11122  257899999999998875332233   257899999999999986


Q ss_pred             cC----cccccCCCCCCEEEccCCcCcc
Q 010856          237 AI----PASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       237 ~~----~~~~~~l~~L~~L~l~~N~l~~  260 (499)
                      ..    +..+..+++|+.|++++|.++.
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            43    3334567999999999998874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.98  E-value=4.2e-08  Score=96.24  Aligned_cols=108  Identities=18%  Similarity=0.226  Sum_probs=65.4

Q ss_pred             cccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCC
Q 010856          145 TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISL  224 (499)
Q Consensus       145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  224 (499)
                      .+.++..|+.+.+..+ ++.+....|.++..|+.+.+..+ +..+....|.++++|+.+.+.++.++.+....|.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3455666666666554 44455556666666666666443 444455566666666666666666665556666666666


Q ss_pred             CEEeCCCCcCCccCcccccCCCCCCEEEccC
Q 010856          225 KFLNLSNNNLSGAIPASLEKLSYLENLNLSF  255 (499)
Q Consensus       225 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  255 (499)
                      +.++|..+ ++.+...+|.++++|+.+.+..
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            66666543 5555556666666666665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=4.2e-09  Score=92.07  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=46.3

Q ss_pred             CCCccEEEccCCccccc----CcccccCCcCCceeeCcCCcCCCC----CCccccCCCCCCEEeC--CCCcCCcc----C
Q 010856          173 LKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNL--SNNNLSGA----I  238 (499)
Q Consensus       173 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l--~~N~l~~~----~  238 (499)
                      .++|++|+|++|.|...    +...+...++|++|+|++|.|++.    +...+...++|+.|+|  ++|.|...    +
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            34444444444444321    122233445566666666666542    2334555566777777  66666643    2


Q ss_pred             cccccCCCCCCEEEccCCcCc
Q 010856          239 PASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       239 ~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      ...+...++|++|++++|.+.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCcCEEeccCCCCC
Confidence            234445567777777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=4e-09  Score=92.21  Aligned_cols=89  Identities=11%  Similarity=0.072  Sum_probs=47.5

Q ss_pred             cCCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCccccc----CcccccCCcCCceeeC--cCCcCCCCC--
Q 010856          147 WNLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFL--GYNRLQGSI--  214 (499)
Q Consensus       147 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~~--  214 (499)
                      ...++|++|+|++|.+.+.    +...+...+.|++|+|++|.|...    +...+...++|++|+|  ++|.++...  
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3344455555555544431    112233344555555555555532    2344555666777777  667766432  


Q ss_pred             --CccccCCCCCCEEeCCCCcCC
Q 010856          215 --PDSFGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       215 --~~~l~~l~~L~~L~l~~N~l~  235 (499)
                        ...+...++|+.|++++|.+.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence              234455577788888777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=7.8e-09  Score=95.02  Aligned_cols=79  Identities=22%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             cCCCCCCeEeccccccccc--CCccccCcccccEEeeecCCCCCcCCccccCCc--cCCeeeccccCCCC-CC-------
Q 010856           76 SKLQKLQGLGLEDNKLEGS--IPDDICHLAELYRLDLDGNKLSGSLPACFSNLT--SLRIVSLGSNKLTS-VP-------  143 (499)
Q Consensus        76 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~-~~-------  143 (499)
                      .++++|+.|+|++|+|++.  ++..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+.. +|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            3456666666666666652  234455666666666666666644  2222233  66777777776654 33       


Q ss_pred             ccccCCCCCcEEE
Q 010856          144 LTFWNLKDILNLN  156 (499)
Q Consensus       144 ~~~~~l~~L~~L~  156 (499)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1245567777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=3e-08  Score=91.07  Aligned_cols=57  Identities=26%  Similarity=0.302  Sum_probs=26.5

Q ss_pred             ccCCcCCceeeCcCCcCCCCCCccccCCC--CCCEEeCCCCcCCccCc-------ccccCCCCCCEEE
Q 010856          194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLI--SLKFLNLSNNNLSGAIP-------ASLEKLSYLENLN  252 (499)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~  252 (499)
                      +..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|++.+..|       ..+..+|+|+.||
T Consensus       192 ~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          192 VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            33444555555555554432  1122222  55555565555554332       2344556666554

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.30  E-value=3.6e-07  Score=84.55  Aligned_cols=88  Identities=14%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEcccccee
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~  434 (499)
                      +......|......+.|+.+.||++.. .++.+++|+...........+.+|+++++.+. |..+.++++++...  ...
T Consensus         9 l~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~--~~~   85 (263)
T 3tm0_A            9 LKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHD--GWS   85 (263)
T ss_dssp             HHHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEET--TEE
T ss_pred             HHHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecC--Cce
Confidence            344556788888899999999999975 36789999987533223346889999998874 67778888776542  234


Q ss_pred             eeeecccCCCcc
Q 010856          435 LCLFHHSSASAS  446 (499)
Q Consensus       435 ~~l~~~~~~~~~  446 (499)
                      +.+++++.|...
T Consensus        86 ~lv~e~i~G~~l   97 (263)
T 3tm0_A           86 NLLMSEADGVLC   97 (263)
T ss_dssp             EEEEECCSSEEH
T ss_pred             EEEEEecCCeeh
Confidence            457788877643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=2.7e-07  Score=78.64  Aligned_cols=85  Identities=13%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             CCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCc-ccccCcccccCC----cCCceeeCcCCc-CCCCCCccccCCC
Q 010856          149 LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNN-FSGVIPTEIGGL----KNLEYLFLGYNR-LQGSIPDSFGDLI  222 (499)
Q Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~  222 (499)
                      -..|++||++++.+++..-..+.++++|+.|+|++|. +++..-..+..+    ++|++|+|++|. +++..-..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3456777777776665444555666666666666664 544333334432    356666666653 5544334455556


Q ss_pred             CCCEEeCCCCc
Q 010856          223 SLKFLNLSNNN  233 (499)
Q Consensus       223 ~L~~L~l~~N~  233 (499)
                      +|+.|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=2.7e-07  Score=78.58  Aligned_cols=84  Identities=15%  Similarity=0.112  Sum_probs=47.7

Q ss_pred             CCccEEEccCCcccccCcccccCCcCCceeeCcCCc-CCCCCCccccCC----CCCCEEeCCCCc-CCccCcccccCCCC
Q 010856          174 KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR-LQGSIPDSFGDL----ISLKFLNLSNNN-LSGAIPASLEKLSY  247 (499)
Q Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~N~-l~~~~~~~~~~l~~  247 (499)
                      ..|+.||++++.++...-..+.++++|++|+|++|. +++.....+..+    ++|++|+|++|. |++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            346666666666655544555566666666666663 554333344443    356666666653 55544445556666


Q ss_pred             CCEEEccCCc
Q 010856          248 LENLNLSFNK  257 (499)
Q Consensus       248 L~~L~l~~N~  257 (499)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.09  E-value=1.3e-06  Score=80.54  Aligned_cols=83  Identities=11%  Similarity=-0.031  Sum_probs=54.9

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCC--ccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN--LIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~n--iv~l~~~~~~~~~~~~~~l  437 (499)
                      ...+......+.|..+.||++...+|..+++|.....   ....+.+|+++++.+.+.+  +.+++++....  ...+++
T Consensus        19 ~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~--~~~~~v   93 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEA--GRDWLL   93 (264)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS--SCEEEE
T ss_pred             cCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCC--CCCEEE
Confidence            3445544444566679999998777888999987543   2245789999998886545  44577665442  224567


Q ss_pred             ecccCCCccc
Q 010856          438 FHHSSASASA  447 (499)
Q Consensus       438 ~~~~~~~~~~  447 (499)
                      ++++.|....
T Consensus        94 ~e~i~G~~l~  103 (264)
T 1nd4_A           94 LGEVPGQDLL  103 (264)
T ss_dssp             EECCSSEETT
T ss_pred             EEecCCcccC
Confidence            8888776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.72  E-value=8.9e-06  Score=70.59  Aligned_cols=88  Identities=18%  Similarity=0.090  Sum_probs=45.2

Q ss_pred             cCCCCccEEEccCCcccccC----cccccCCcCCceeeCcCCcCCCC----CCccccCCCCCCEEeCCCC---cCCc---
Q 010856          171 GNLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNLSNN---NLSG---  236 (499)
Q Consensus       171 ~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N---~l~~---  236 (499)
                      ..-+.|+.|+|++|+|.+..    ...+..-+.|++|+|++|.|.+.    +.+.+..-+.|+.|+|++|   .+..   
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            33444555555555554322    22233445666666666666542    1233445556777777654   2332   


Q ss_pred             -cCcccccCCCCCCEEEccCCcC
Q 010856          237 -AIPASLEKLSYLENLNLSFNKL  258 (499)
Q Consensus       237 -~~~~~~~~l~~L~~L~l~~N~l  258 (499)
                       .+...+...++|+.|+++.|.+
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhCCCcCeEeccCCCc
Confidence             1234455566777777765543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=9.1e-06  Score=70.54  Aligned_cols=62  Identities=11%  Similarity=0.003  Sum_probs=30.1

Q ss_pred             CCCccEEEccCCccccc----CcccccCCcCCceeeCcCCc---CCC----CCCccccCCCCCCEEeCCCCcC
Q 010856          173 LKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNR---LQG----SIPDSFGDLISLKFLNLSNNNL  234 (499)
Q Consensus       173 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~----~~~~~l~~l~~L~~L~l~~N~l  234 (499)
                      -+.|+.|+|++|.|...    +...+..-+.|++|+|++|.   +..    .+...+..-++|+.|+++.|.+
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            34455555555554432    12233444556666666442   221    1223345556677777766644

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.29  E-value=0.00042  Score=56.05  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             cccccEEEcccCCCcccCCccccCCCCCCEEeccCCcC
Q 010856           30 SHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKL   67 (499)
Q Consensus        30 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   67 (499)
                      |.+|++|+|++|+|+.+.++.|..+++|++|+|++|.+
T Consensus        30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            33455555555555544444455555555555555544

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.27  E-value=0.00017  Score=69.68  Aligned_cols=80  Identities=8%  Similarity=0.010  Sum_probs=50.9

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEee--ccC-CccHHHHHHHHHHHhcCC--CCCccccceeEEcccc-ceeeeeec
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFN--LQC-GRAFESFDVECEMMKNIR--HRNLIKILHGVAVITF-TVCLCLFH  439 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~il~~l~--H~niv~l~~~~~~~~~-~~~~~l~~  439 (499)
                      .+.++.|.++.||+....+ ..+++|+..  ... ......+.+|.++++.+.  +..+.++++++...+. ...+.+++
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            4678999999999998754 578888776  332 123456889999999886  4557787777654321 12345788


Q ss_pred             ccCCCcc
Q 010856          440 HSSASAS  446 (499)
Q Consensus       440 ~~~~~~~  446 (499)
                      ++.|...
T Consensus       122 ~v~G~~l  128 (359)
T 3dxp_A          122 FVSGRVL  128 (359)
T ss_dssp             CCCCBCC
T ss_pred             ecCCeec
Confidence            8877644

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.23  E-value=0.00066  Score=54.87  Aligned_cols=56  Identities=29%  Similarity=0.382  Sum_probs=31.4

Q ss_pred             eeeCcCCcCC-CCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          202 YLFLGYNRLQ-GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       202 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5556666655 12232222  25667777777776666666666666666655544443

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=91.69  E-value=0.11  Score=48.55  Aligned_cols=74  Identities=5%  Similarity=-0.041  Sum_probs=46.8

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCC---CccccceeEEccccceeeeeecccC
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR---NLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~---niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      ...++.|....||+.    |..+++|+-..  ......+.+|.++++.+.+.   -+.+.+.+....+... +++++++.
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~-~~v~e~i~   96 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNP-FVGYRKVQ   96 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCE-EEEEECCC
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCce-EEEEeccC
Confidence            345788888899987    45678887421  12346789999999988653   2445554443222223 35777777


Q ss_pred             CCcc
Q 010856          443 ASAS  446 (499)
Q Consensus       443 ~~~~  446 (499)
                      |...
T Consensus        97 G~~l  100 (306)
T 3tdw_A           97 GQIL  100 (306)
T ss_dssp             SEEC
T ss_pred             CeEC
Confidence            7643

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=91.02  E-value=0.027  Score=56.09  Aligned_cols=60  Identities=12%  Similarity=0.062  Sum_probs=17.6

Q ss_pred             cccccccCCcceEEEEEeCC-CCEEEE------EEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEE
Q 010856          365 ENNLIGKGGFGSVYKARLGD-RMEVAV------KVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVA  427 (499)
Q Consensus       365 ~~~~lg~G~~g~v~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~  427 (499)
                      +.+.+|   ||.||+|.+.. ...||+      |..+...  ......|.+|..+++..+|||+++.+++..
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            345666   99999999743 467888      6665432  233457899999999999999999988754

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=89.90  E-value=0.05  Score=50.79  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcC-CCCCc--cccceeEEcccc-ceeeeeeccc
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI-RHRNL--IKILHGVAVITF-TVCLCLFHHS  441 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l-~H~ni--v~l~~~~~~~~~-~~~~~l~~~~  441 (499)
                      .+.++.|....||+..    ..+++|+....  .....+.+|.++++.+ .+..+  .+.++.....+. ...+.+++++
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            3558899999999763    45788875432  2356789999999877 33332  333322211111 1123456777


Q ss_pred             CCCcc
Q 010856          442 SASAS  446 (499)
Q Consensus       442 ~~~~~  446 (499)
                      .|...
T Consensus        99 ~G~~l  103 (304)
T 3sg8_A           99 KGVPL  103 (304)
T ss_dssp             CCEEC
T ss_pred             CCeEC
Confidence            66543

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=89.56  E-value=0.29  Score=30.34  Aligned_cols=17  Identities=29%  Similarity=0.360  Sum_probs=6.6

Q ss_pred             hhhHHHHHHHHHHhhhc
Q 010856          316 TTFMIVVILLILRYQQR  332 (499)
Q Consensus       316 ~~~~~~~~~~~~~~~~~  332 (499)
                      .++++++.+.++++.||
T Consensus        21 v~~~~ii~~~~~~~~RR   37 (44)
T 2ks1_B           21 LLLLLVVALGIGLFMRR   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            33333333443444333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=86.93  E-value=0.47  Score=29.32  Aligned_cols=16  Identities=19%  Similarity=0.287  Sum_probs=6.1

Q ss_pred             hhhHHHHHHHHHHhhh
Q 010856          316 TTFMIVVILLILRYQQ  331 (499)
Q Consensus       316 ~~~~~~~~~~~~~~~~  331 (499)
                      .++++++.+.++++.|
T Consensus        20 v~~v~ii~~~~~~~~R   35 (44)
T 2l2t_A           20 LFILVIVGLTFAVYVR   35 (44)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            3333333344344433

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=85.79  E-value=1.4  Score=40.37  Aligned_cols=53  Identities=15%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             cccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC
Q 010856          363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR  415 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~  415 (499)
                      ..-...+|.|..+.||+.+..+|+.|.+|+-..........|.+|.+.|+.+.
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~   69 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLG   69 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHT
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHH
Confidence            44456789999999999999999999999876544444457889999988763

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=85.61  E-value=0.67  Score=41.98  Aligned_cols=71  Identities=14%  Similarity=0.014  Sum_probs=44.6

Q ss_pred             cccCCcc-eEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeeeecccCCC
Q 010856          369 IGKGGFG-SVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       369 lg~G~~g-~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      +..|..+ .||+.... ++..+.+|+-...   ....+.+|.++++.+. +--+.++++++...+  ..+++++++.|.
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~--~~~lvme~l~G~  105 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPD--DAWLLTTAIPGK  105 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETT--EEEEEEECCCSE
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECC--eEEEEEEeeCCc
Confidence            4445555 68987754 5677889986543   3456889999988763 223556666665432  334567777664

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=83.66  E-value=0.56  Score=45.38  Aligned_cols=74  Identities=9%  Similarity=0.111  Sum_probs=45.1

Q ss_pred             ccccccCCcceEEEEEeC-CCCEEEEEEeeccCC-------ccHHHHHHHHHHHhcCCC--CC-ccccceeEEcccccee
Q 010856          366 NNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCG-------RAFESFDVECEMMKNIRH--RN-LIKILHGVAVITFTVC  434 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~il~~l~H--~n-iv~l~~~~~~~~~~~~  434 (499)
                      .+.+|.|.++.||++... +++.+++|.......       ...+++.+|.++++.+..  |. +.+++.+  ..+  ..
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~--~~  110 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTE--MA  110 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETT--TT
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCC--cc
Confidence            457899999999999753 467899998653211       123567889998887632  33 3344432  222  23


Q ss_pred             eeeecccCC
Q 010856          435 LCLFHHSSA  443 (499)
Q Consensus       435 ~~l~~~~~~  443 (499)
                      +++++++.|
T Consensus       111 ~lvmE~l~g  119 (397)
T 2olc_A          111 VTVMEDLSH  119 (397)
T ss_dssp             EEEECCCTT
T ss_pred             EEEEEeCCC
Confidence            456777765

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=82.16  E-value=1.6  Score=40.60  Aligned_cols=95  Identities=11%  Similarity=-0.015  Sum_probs=65.2

Q ss_pred             ccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC---CCCccccceeEEccccceeeeeecccC
Q 010856          366 NNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR---HRNLIKILHGVAVITFTVCLCLFHHSS  442 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~---H~niv~l~~~~~~~~~~~~~~l~~~~~  442 (499)
                      .+.++.|.+..+|+... ++..+.+|+....   ....+.+|.+.++.+.   ..-+.+.+++....  ...+.+++++.
T Consensus        41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~--g~~~lvme~l~  114 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ--GHSFLLLEALN  114 (312)
T ss_dssp             EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS--SEEEEEEECCC
T ss_pred             eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC--CceEEEEEecc
Confidence            45689999999999886 4668888987643   3567889999888773   24567777665442  23456788887


Q ss_pred             CCccccccccccccccccccccccceeeccCCC
Q 010856          443 ASASASLVSSLTLSRPAKGGGFRGCVLWHVGVD  475 (499)
Q Consensus       443 ~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~~~~  475 (499)
                      |....         ...+.+++++|+-||+...
T Consensus       115 G~~~~---------~~~~~~lG~~LA~LH~~~~  138 (312)
T 3jr1_A          115 KSKNK---------QSSFTIFAEKIAQLHQIQG  138 (312)
T ss_dssp             CCCCC---------TTHHHHHHHHHHHHHHCCC
T ss_pred             CCCCC---------chhHHHHHHHHHHHHcCCC
Confidence            76321         1234567788889998543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=81.45  E-value=4.2  Score=30.46  Aligned_cols=48  Identities=15%  Similarity=-0.022  Sum_probs=31.1

Q ss_pred             CCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccc
Q 010856           41 CNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDN   89 (499)
Q Consensus        41 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   89 (499)
                      ..++.+...+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+...
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            3455555667777777777777654 44466666777777777776553

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=80.90  E-value=0.93  Score=27.97  Aligned_cols=7  Identities=14%  Similarity=0.316  Sum_probs=2.8

Q ss_pred             HHhhhcC
Q 010856          327 LRYQQRG  333 (499)
Q Consensus       327 ~~~~~~~  333 (499)
                      ++.+||+
T Consensus        33 ~~~RRR~   39 (44)
T 2jwa_A           33 ILIKRRQ   39 (44)
T ss_dssp             HHHHHHC
T ss_pred             hheehhh
Confidence            3344443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	499
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-14
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-13
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-13
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-12
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-12
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-12
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-12
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-12
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	6e-12
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-11
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-11
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-11
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-11
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-11
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-11
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-11
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	8e-11
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-11
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	8e-11
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-11
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-11
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	9e-11
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-10
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-10
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-10
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-10
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-10
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-10
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-10
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-10
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	9e-10
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-09
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-09
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-09
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-09
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-09
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-09
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-04
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	5e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	8e-09
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-08
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-08
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-08
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-08
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-08
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-08
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-08
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-08
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	5e-08
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	5e-08
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-08
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	7e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-07
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-07
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-07
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-07
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-06
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 97.4 bits (241), Expect = 1e-22
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 15/229 (6%)

Query: 28  NLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE 87
            L++     R+   +        ++ LTN   +    N+++   P+ +     L  L L 
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLN 227

Query: 88  DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFW 147
            N+L+      +  L  L  LDL  N++S   P   S LT L  + LG+N+++++     
Sbjct: 228 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLA 282

Query: 148 NLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 207
            L  + NL  + N L    P  I NLK L  +    NN S + P  +  L  L+ LF   
Sbjct: 283 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338

Query: 208 NRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFN 256
           N++      S  +L ++ +L+  +N +S   P  L  L+ +  L L+  
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 1e-17
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 76  SKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLG 135
           +KL  L+ L   +N++    P  I     L  L L+GN+L        ++LT+L  + L 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 136 SNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG 195
           +N+++++      L  +  L   +N +++  PL    L  L  ++ + N    + P    
Sbjct: 250 NNQISNLA-PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPISN- 305

Query: 196 GLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSF 255
            LKNL YL L +N +    P     L  L+ L  +NN +S    +SL  L+ +  L+   
Sbjct: 306 -LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 256 NKLEGEIP 263
           N++    P
Sbjct: 361 NQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 3e-10
 Identities = 52/276 (18%), Positives = 91/276 (32%), Gaps = 28/276 (10%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           +         L    +   + +T +  ++      +     I     + +  L N T +N
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTT----LQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYR----LDLDGNKLSG 117
              N+L    P  L  L KL  + + +N++    P                  D + L  
Sbjct: 73  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 118 SLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGN----- 172
                   L+S  I  + +    +          + +L   +N  T        N     
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 173 -----LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFL 227
                L  L  +  + N  S + P  I    NL+ L L  N+L+     +   L +L  L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 228 NLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
           +L+NN +S   P  L  L+ L  L L  N++    P
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 9e-10
 Identities = 53/289 (18%), Positives = 94/289 (32%), Gaps = 36/289 (12%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +    +LT I  SNN L  I P  ++  L   L +               ++ LT     
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS-- 118
               + L     +   +L       +       S+              L          
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 119 -------LPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIG 171
                    +  + LT+L  +   +N+++ +      L ++  L+ + N L     L   
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTL--A 238

Query: 172 NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP---------------- 215
           +L  L  +D + N  S + P  + GL  L  L LG N++    P                
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 216 ----DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEG 260
                   +L +L +L L  NN+S   P  +  L+ L+ L  + NK+  
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 23/244 (9%)

Query: 52  SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD 111
           + L       LG   +     ++ + L ++  L  +   ++ SI D + +L  L +++  
Sbjct: 19  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFS 74

Query: 112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPL--- 168
            N+L+   P    NLT L  + + +N++  +              F++            
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 169 ----------EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL-GYNRLQGSIPDS 217
                      I ++  L G+        G   T++  L NL  L     +  + S    
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 218 FGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFE 277
              L +L+ L  +NN +S   P  +   + L+ L+L+ N+L+  I    S  N +     
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-IGTLASLTNLTDLDLA 249

Query: 278 GNEL 281
            N++
Sbjct: 250 NNQI 253

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S+   L  ++ +NN +  +   +S+ NL+ ++      +  IS   P  ++NLT  T + 
Sbjct: 326 SSLTKLQRLFFANNKVSDV---SSLANLT-NINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 62  LGGN 65
           L   
Sbjct: 380 LNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.8 bits (229), Expect = 2e-21
 Identities = 55/261 (21%), Positives = 96/261 (36%), Gaps = 12/261 (4%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
               L+ L NN +  I       NL + L    + N  IS   P   + L     + L  
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
           N+L          LQ+L+    E  K+  S+ + +  +  +  L  +  K SG     F 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQ 147

Query: 125 NLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN 184
            +  L  + +    +T++P        +  L+   N +T      +  L  L  +  S N
Sbjct: 148 GMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 185 NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG------AI 238
           + S V    +    +L  L L  N+L   +P    D   ++ + L NNN+S         
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 239 PASLEKLSYLENLNLSFNKLE 259
           P    K +    ++L  N ++
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.6 bits (213), Expect = 2e-19
 Identities = 53/246 (21%), Positives = 88/246 (35%), Gaps = 5/246 (2%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELY 106
           +P+++    ++ +++L  NK+          L+ L  L L +NK+    P     L +L 
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPL 166
           RL L  N+L          L  LR+      K+        N   ++ L  +    +   
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKF 226
                 +K L  I  +  N + +     G   +L  L L  N++      S   L +L  
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 227 LNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP 286
           L LS N++S     SL    +L  L+L+ NKL                    N +     
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 287 NLQVPP 292
           N   PP
Sbjct: 260 NDFCPP 265

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (210), Expect = 5e-19
 Identities = 53/232 (22%), Positives = 87/232 (37%), Gaps = 6/232 (2%)

Query: 56  NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKL 115
           +  +V      L   +P  L        L L++NK+      D  +L  L+ L L  NK+
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 116 SGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKV 175
           S   P  F+ L  L  + L  N+L  +P         L ++ +             N  +
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 176 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLS 235
           ++ +  +    SG+      G+K L Y+ +    +  +IP       SL  L+L  N ++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT 184

Query: 236 GAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN 287
               ASL+ L+ L  L LSFN +        +      E    N  L   P 
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 5/151 (3%)

Query: 155 LNFSSNFLTSPLPLEIG-NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 213
           +  S   L   +P ++  +  +L   D   N  + +   +   LKNL  L L  N++   
Sbjct: 15  VQCSDLGLEK-VPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 214 IPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSA 273
            P +F  L+ L+ L LS N L        + L  L        K+   +  G +      
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 274 ESFEGNELLCGSPNLQVPPCKTSIHHTSWKN 304
                 +             K S    +  N
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
               K L+ I +++  +  I        L  SL +  +    I+      +  L N   +
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSG--- 117
            L  N ++     +L+    L+ L L +NKL   +P  +     +  + L  N +S    
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 118 ---SLPACFSNLTSLRIVSLGSNKLTSVPL 144
                P   +   S   VSL SN +    +
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.8 bits (221), Expect = 2e-20
 Identities = 72/293 (24%), Positives = 115/293 (39%), Gaps = 28/293 (9%)

Query: 2   SNCKSLTLIYLSNNPLDGILP-KTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +    +  + LS   L    P  +S+ NL +    +     N+ G IP  I+ LT    +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            +    ++G+IP  LS+++ L  L    N L G++P  I  L  L  +  DGN++SG++P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
             + + + L      S    +  +        L     S  +       +          
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
               N       ++G  KNL  L L  NR+ G++P     L  L  LN+S NNL      
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC----- 281

Query: 241 SLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPC 293
                              GEIP+GG+   F   ++  N+ LCGSP   +P C
Sbjct: 282 -------------------GEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 97  DDICHLAELYRLDLDGNKLSG--SLPACFSNLTSLRIVSLGS--NKLTSVPLTFWNLKDI 152
           D       +  LDL G  L     +P+  +NL  L  + +G   N +  +P     L  +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
             L  +   ++  +P  +  +K L+ +DFS N  SG +P  I  L NL  +    NR+ G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 213 SIPDSFGDLISLKFLNLSNNN 233
           +IPDS+G    L      + N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRN 184

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
           +   K+L  + L NN + G LP+  +  L   L    +   N+ G IP +  NL    + 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLK-FLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296

Query: 61  NLGGNKLNGSIPI 73
               NK     P+
Sbjct: 297 AYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG--SIPDSFGDLISLKFLNLSNN-NL 234
             D     + GV+         +  L L    L     IP S  +L  L FL +    NL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 235 SGAIPASLEKLSYLENLNLSFN 256
            G IP ++ KL+ L  L ++  
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHT 111

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 1e-18
 Identities = 54/257 (21%), Positives = 89/257 (34%), Gaps = 6/257 (2%)

Query: 5   KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGG 64
            +   I+L  N +  + P  S     +    +   N                  +     
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 65  NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFS 124
            +L    P T   L +L  L L+   L+   P     LA L  L L  N L       F 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 125 NLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSM 183
           +L +L  + L  N+++SVP   F  L  +  L    N +    P    +L  L+ +    
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 184 NNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLE 243
           NN S +    +  L+ L+YL L  N        +      L+    S++ +  ++P  L 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 244 KLSYLENLNLSFNKLEG 260
                    L+ N L+G
Sbjct: 270 GRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 2e-13
 Identities = 61/242 (25%), Positives = 88/242 (36%), Gaps = 4/242 (1%)

Query: 47  IPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELY 106
           +P  I     S  + L GN+++     +    + L  L L  N L          LA L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 107 RLDLDGNKLSGSL-PACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF-SSNFLTS 164
           +LDL  N    S+ PA F  L  L  + L    L  +    +     L   +   N L +
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 165 PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISL 224
                  +L  L  +    N  S V      GL +L+ L L  NR+    P +F DL  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 225 KFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCG 284
             L L  NNLS     +L  L  L+ L L+ N    +      +          +E+ C 
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263

Query: 285 SP 286
            P
Sbjct: 264 LP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 3e-11
 Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 5/188 (2%)

Query: 1   MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
                 L  ++L    L  +     +     +L+   + +  +     +   +L N T +
Sbjct: 101 FHGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 61  NLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
            L GN+++         L  L  L L  N++    P     L  L  L L  N LS    
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
              + L +L+ + L  N              +     SS+ +   LP  +    +     
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---R 275

Query: 181 FSMNNFSG 188
            + N+  G
Sbjct: 276 LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 36/231 (15%), Positives = 60/231 (25%), Gaps = 28/231 (12%)

Query: 120 PACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGI 179
            AC          S     L +VP+          +    N ++          + L  +
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 180 DFSMNNFSGVI-------------------------PTEIGGLKNLEYLFLGYNRLQGSI 214
               N  + +                          P    GL  L  L L    LQ   
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 215 PDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRG-GSFGNFSA 273
           P  F  L +L++L L +N L      +   L  L +L L  N++     R      +   
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 274 ESFEGNELLCGSPNLQVPPCKTSIHHTSWKNSLLLRIVLPLSTTFMIVVIL 324
                N +    P+      +    +    N   L          +  + L
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 4e-14
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 350 TFSYLELFRATDEFSEN---------NLIGKGGFGSVYKARL----GDRMEVAVKVFNLQ 396
            F++ +   A  EF++           +IG G FG V    L       + VA+K     
Sbjct: 6   PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG 65

Query: 397 -CGRAFESFDVECEMMKNIRHRNLIKILH 424
              +    F  E  +M    H N+I +  
Sbjct: 66  YTEKQRRDFLSEASIMGQFDHPNVIHLEG 94

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
           +       +G G FG V+        +VAVK    Q   + ++F  E  +MK ++H+ L+
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLV 71

Query: 421 KILHGV 426
           + L+ V
Sbjct: 72  R-LYAV 76

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
            E +    IG G FG V+     ++ +VA+K        + E F  E E+M  + H  L+
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLV 63

Query: 421 KILHGVAVITFTVCLCLFHHS 441
           + L+GV +    +CL      
Sbjct: 64  Q-LYGVCLEQAPICLVFEFME 83

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 2e-12
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 354 LELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAF-ESFDVECEMM 411
           +EL    D+F + + +G G  G V+K       + +A K+ +L+   A       E +++
Sbjct: 1   MEL--KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL 58

Query: 412 KNIRHRNLIKILHGVAVITFTVCLCL 437
                  ++   +G       + +C+
Sbjct: 59  HECNSPYIVG-FYGAFYSDGEISICM 83

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
            + +    +G G FG V   +   + +VA+K+   +   + + F  E ++M N+ H  L+
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLV 62

Query: 421 KILHGVAVITFTVCLCLFHHS 441
           + L+GV      + +   + +
Sbjct: 63  Q-LYGVCTKQRPIFIITEYMA 82

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
           +       +G+G FG V+         VA+K        + E+F  E ++MK +RH  L+
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLV 75

Query: 421 KIL 423
           ++ 
Sbjct: 76  QLY 78

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 5e-12
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
            + +    IG G FG+VYK +     +VAVK+ N+     +  ++F  E  +++  RH N
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65

Query: 419 LIKIL 423
           ++  +
Sbjct: 66  ILLFM 70

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.2 bits (156), Expect = 5e-12
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL---QCGRAFESFDVECEMMKNIR 415
              FS+   IG G FG+VY AR + +   VA+K  +    Q    ++    E   ++ +R
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 416 HRNLIKILHGVAVITFTVCLCL 437
           H N I+   G  +   T  L +
Sbjct: 74  HPNTIQ-YRGCYLREHTAWLVM 94

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (155), Expect = 6e-12
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
            + +  + +G G +G VY+       + VAVK          E F  E  +MK I+H NL
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNL 75

Query: 420 IKILH 424
           +++L 
Sbjct: 76  VQLLG 80

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 1e-11
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGD-----RMEVAVKVFNLQCG-RAFESFDVECEMMKNI 414
              +   +IG G FG VYK  L        + VA+K        +    F  E  +M   
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 415 RHRNLIKILH 424
            H N+I++  
Sbjct: 67  SHHNIIRLEG 76

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLI 420
            E      IGKG FG V         +VAVK          ++F  E  +M  +RH NL+
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDYRGN-KVAVKCIKNDATA--QAFLAEASVMTQLRHSNLV 63

Query: 421 KILH 424
           ++L 
Sbjct: 64  QLLG 67

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 355 ELFRATDEFS-ENNLIGKGGFGSVYKARL---GDRMEVAVKVFNLQCGRAF-ESFDVECE 409
           +LF   D     +  +G G FGSV +        +++VA+KV      +A  E    E +
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 61

Query: 410 MMKNIRHRNLIKIL 423
           +M  + +  +++++
Sbjct: 62  IMHQLDNPYIVRLI 75

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 354 LELFRATDEFSENNLIGKGGFGSVYKARLGD-----RMEVAVKVFNL-QCGRAFESFDVE 407
           L + + T+ F +  ++G G FG+VYK          ++ VA+K        +A +    E
Sbjct: 3   LRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDE 61

Query: 408 CEMMKNIRHRNLIKILH 424
             +M ++ + ++ ++L 
Sbjct: 62  AYVMASVDNPHVCRLLG 78

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 4e-11
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 350 TFSYLELFRATDEFSEN----NLIGKGGFGSVYKAR-LGDRMEVAVKVFN--LQCGRAFE 402
           TF   EL +   E  E     + +G G +GSV  A      + VAVK  +   Q     +
Sbjct: 3   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAK 62

Query: 403 SFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH 440
               E  ++K+++H N+I +L    V T    L  F+ 
Sbjct: 63  RTYRELRLLKHMKHENVIGLLD---VFTPARSLEEFND 97

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 4e-11
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 355 ELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAF-ESFDVECEMMK 412
           ++F     ++  + IG+G +G V  A    +++ VA+K  +    + + +    E +++ 
Sbjct: 2   QVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILL 61

Query: 413 NIRHRNLIKILH 424
             RH N+I I  
Sbjct: 62  RFRHENIIGIND 73

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 5e-11
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN 418
             +++    IG+G  G+VY A  +    EVA++  NLQ     E    E  +M+  ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 419 LIKILH 424
           ++  L 
Sbjct: 79  IVNYLD 84

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
           IGKG FG V++ +     EVAVK+F+ +  R++   + E      +RH N++        
Sbjct: 11  IGKGRFGEVWRGKWRGE-EVAVKIFSSREERSWF-REAEIYQTVMLRHENILG-FIAADN 67

Query: 429 ITFTVCLCLF 438
                   L+
Sbjct: 68  KDNGTWTQLW 77

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 8e-11
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN 418
            D +     +G G FG VYKA+     +  A KV + +     E + VE +++ +  H N
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 419 LIKILH 424
           ++K+L 
Sbjct: 71  IVKLLD 76

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 8e-11
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKN 413
           +  ++F    ++G+G F +V  AR L    E A+K+     +           E ++M  
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 414 IRHRNLIKIL 423
           + H   +K+ 
Sbjct: 65  LDHPFFVKLY 74

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQCGRAF-ESFDVECEMMKNIRHRNLI 420
           N +IG+G FG VY   L    G ++  AVK  N          F  E  +MK+  H N++
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 421 KILH 424
            +L 
Sbjct: 92  SLLG 95

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 8e-11
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 361 DEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFN---LQCGRAFESFDVECEMMKN 413
            +      +G G FG V +       G  + VAVK      L    A + F  E   M +
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 414 IRHRNLIKIL 423
           + HRNLI++ 
Sbjct: 68  LDHRNLIRLY 77

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 9e-11
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 365 ENNLIGKGGFGSVYKARLGDR---MEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNL 419
           E+  +G G FG+V K     +     VAVK+   +       +    E  +M+ + +  +
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 420 IKILH 424
           ++++ 
Sbjct: 71  VRMIG 75

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
           +++  +IG G FG VY+A+L      VA+K             + E ++M+ + H N+++
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVR 77

Query: 422 ILH 424
           + +
Sbjct: 78  LRY 80

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.8 bits (144), Expect = 1e-10
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGR---AFESFDVECEMMKNIR 415
           +D +    ++G GG   V+ AR L    +VAVKV      R    +  F  E +    + 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 416 HRNLIKILH 424
           H  ++ +  
Sbjct: 66  HPAIVAVYD 74

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRN 418
           +++     IG+G +G VYKA+       A+K   L+        +   E  ++K ++H N
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 419 LIKILHGVAVITFTVCLCLFHH 440
           ++K L+ V      + L   H 
Sbjct: 62  IVK-LYDVIHTKKRLVLVFEHL 82

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
           D +     +G G FG V++            K  N        +   E  +M  + H  L
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 420 IKILHGVAVITFTVCLCL 437
           I  LH      + + L L
Sbjct: 89  IN-LHDAFEDKYEMVLIL 105

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
           D +  +  +G G FG V++          A K          E+   E + M  +RH  L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 420 IKILH 424
           + +  
Sbjct: 86  VNLHD 90

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 357 FRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
            R  + +     IG G FG +Y    +    EVA+K+  ++         +E ++ K ++
Sbjct: 3   LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK--TKHPQLHIESKIYKMMQ 60

Query: 416 HRNLIKILHGV 426
               I  +   
Sbjct: 61  GGVGIPTIRWC 71

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 39/207 (18%), Positives = 59/207 (28%), Gaps = 26/207 (12%)

Query: 74  TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVS 133
            +SK+     +  +   L  ++P D+    +   L L  N L     A     T L  ++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 134 LGSNKLTSVPLTFWNLKDILNLNFSSNF----------------------LTSPLPLEIG 171
           L   +LT + +              +                        LTS     + 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 172 NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN 231
            L  L  +    N    + P  +     LE L L  N L          L +L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 232 NNLSGAIPASLEKLSYLENLNLSFNKL 258
           N+L   IP        L    L  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 40/233 (17%), Positives = 65/233 (27%), Gaps = 32/233 (13%)

Query: 2   SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
           S   S   +      L  + P     +L        +    +       +   T  T +N
Sbjct: 7   SKVASHLEVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 62  LGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA 121
           L   +L                                  L  L  LDL  N+L      
Sbjct: 62  LDRAELT--------------------------KLQVDGTLPVLGTLDLSHNQLQSLPLL 95

Query: 122 CFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDF 181
             +      +    +   +        L ++  L    N L +  P  +     L  +  
Sbjct: 96  GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 182 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL 234
           + NN + +    + GL+NL+ L L  N L  +IP  F     L F  L  N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-10
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 351 FSYLELFRATDEFSEN----NLIGKGGFGSVYKAR-LGDRMEVAVKVFN--LQCGRAFES 403
           F   E+ +   E          +G G +G+V  A       +VA+K      Q     + 
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR 63

Query: 404 FDVECEMMKNIRHRNLIKILH 424
              E  ++K++RH N+I +L 
Sbjct: 64  AYRELRLLKHMRHENVIGLLD 84

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL-QCGRAFESFDVECEMMKNIRHRN 418
           +++     +G+G +G V  A        VAVK+ ++ +     E+   E  + K + H N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 419 LIKILHGVAVITFTVCLCL 437
           ++K  +G         L L
Sbjct: 65  VVK-FYGHRREGNIQYLFL 82

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-10
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 361 DEFSENNLIGKGGFGSVYKARL---GDRMEVAVKVFNLQCGR-AFESFDVECEMMKNI-R 415
           ++    ++IG+G FG V KAR+   G RM+ A+K       +     F  E E++  +  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 416 HRNLIKILH 424
           H N+I +L 
Sbjct: 70  HPNIINLLG 78

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.7 bits (139), Expect = 7e-10
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 360 TDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFE-SFDVECEMMKNIRHR 417
            D +   +++G G F  V  A     +  VA+K    +     E S + E  ++  I+H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 418 NLIKILHGVAVITFTVCLCL 437
           N++  L  +      + L +
Sbjct: 68  NIVA-LDDIYESGGHLYLIM 86

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 9e-10
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 361 DEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQCGRAF-ESFDVECEMMKNIR 415
           +       IG+G FG V++          + VA+K        +  E F  E   M+   
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 416 HRNLIKIL 423
           H +++K++
Sbjct: 67  HPHIVKLI 74

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRH 416
            +F     +G G FG V+  R   +    A+KV     +   +  E  + E  M+  + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 417 RNLIKIL 423
             +I++ 
Sbjct: 64  PFIIRMW 70

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRH 416
           ++F     +GKG FG+VY AR    +  +A+KV     L+          E E+  ++RH
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 417 RNLIKIL 423
            N++++ 
Sbjct: 66  PNILRLY 72

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL------QCGRAFESFDVECEMMKN 413
           D +     +G G F  V K R     ++ A K          + G + E  + E  ++K 
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 414 IRHRNLIKILHGVAVITFTVCLCL 437
           I+H N+I  LH V      V L L
Sbjct: 70  IQHPNVIT-LHEVYENKTDVILIL 92

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHR 417
           +++     IG G +G   K R   D   +  K  +         +    E  +++ ++H 
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 418 NLIKILH 424
           N+++   
Sbjct: 64  NIVRYYD 70

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRA---FESFDVECEMMKNIRH 416
           ++F    L+GKG FG V   R        A+K+   +   A         E  +++N RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 417 RNLIKILH 424
             L  + +
Sbjct: 65  PFLTALKY 72

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHR 417
           + F +   IG+G +G VYKAR       VA+K   L         +   E  ++K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 418 NLIKI 422
           N++K+
Sbjct: 62  NIVKL 66

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 361 DEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCG-RAFESFDVECEMMKN 413
           ++ + +  +G+G FG VY+              VA+K  N     R    F  E  +MK 
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 414 IRHRNLIKILH 424
               +++++L 
Sbjct: 80  FNCHHVVRLLG 90

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 130 RIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGV 189
           R++ L    LT +      L  + +L+ S N L +  P  +  L+ L  +  S N    V
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 190 IPTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYL 248
                     L+ L L  NRLQ  +          L  LNL  N+L             L
Sbjct: 59  DGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 249 ENLN 252
            +++
Sbjct: 117 PSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 8/125 (6%)

Query: 84  LGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP 143
           L L    L  ++   +  L  +  LDL  N+L    P   + L  L ++    N L +V 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 144 LTFWNLKDILNLNFSSNFLTS-PLPLEIGNLKVLIGIDFSMNNFS---GVIPTEIGGLKN 199
               NL  +  L   +N L        + +   L+ ++   N+     G+       L +
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 200 LEYLF 204
           +  + 
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 155 LNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI 214
           L+ +   LT    L    L ++  +D S N    + P  +  L+ LE L    +      
Sbjct: 3   LHLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ--ASDNALEN 57

Query: 215 PDSFGDLISLKFLNLSNNNL-SGAIPASLEKLSYLENLNLSFNKLEGE 261
            D   +L  L+ L L NN L   A    L     L  LNL  N L  E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 40  NCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDI 99
           + +++  +   +  L   T ++L  N+L    P  L+ L+ L+ L   DN       D +
Sbjct: 7   HKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LENVDGV 61

Query: 100 CHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDIL 153
            +L  L  L L  N+L   +      +   L +++L  N L         L ++L
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNL------QCGRAFESFDVECEMMKN 413
           ++FS + +IG+GGFG VY  R        A+K  +       Q      +  +   ++  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 414 IRHRNLIKILH 424
                ++ + +
Sbjct: 64  GDCPFIVCMSY 74

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 5e-09
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 21/214 (9%)

Query: 47  IPEEIS------NLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDIC 100
           +P  I           +   NL    +     +T ++L  +  +   ++ ++      I 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQ 65

Query: 101 HLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
           +L  + +L L+GNKL+         L +L+ +         V             + S  
Sbjct: 66  YLPNVTKLFLNGNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 161 FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
                    + +L  L  +    N  + +       L  L+ L L  N++   +P     
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSR--LTKLDTLSLEDNQISDIVP--LAG 176

Query: 221 LISLKFLNLSNNNLSGAIPASLEKLSYLENLNLS 254
           L  L+ L LS N++S     +L  L  L+ L L 
Sbjct: 177 LTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 33/204 (16%), Positives = 69/204 (33%), Gaps = 17/204 (8%)

Query: 61  NLGGNKLNGSIPI----TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS 116
            LG   +    PI    +     +     L+   +  ++  +   L  + ++  + + + 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 59

Query: 117 GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVL 176
                    L ++  + L  NKLT +         + NL            ++  +    
Sbjct: 60  SVQG--IQYLPNVTKLFLNGNKLTDIK-------PLANLKNLGWLFLDENKVKDLSSLKD 110

Query: 177 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG 236
           +    S++     I    G +   +   L     + +       L  L  L+L +N +S 
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170

Query: 237 AIPASLEKLSYLENLNLSFNKLEG 260
            +P  L  L+ L+NL LS N +  
Sbjct: 171 IVP--LAGLTKLQNLYLSKNHISD 192

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 5e-09
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 367 NLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC-----GRAFESFDVECEMMKNIRHRNLI 420
           + +G+G F +VYKAR       VA+K   L            +   E ++++ + H N+I
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 421 KILHGVAVITFTVCLCL 437
             L         + L  
Sbjct: 64  G-LLDAFGHKSNISLVF 79

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.3 bits (129), Expect = 6e-09
 Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 27/219 (12%)

Query: 53  NLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG 112
            L N+  +  G + +     +T + L  +  L      +     + + +L  L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 113 NKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGN 172
           N+++    A   NLT +  + L  N L +V               S+          + N
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 173 LKVLIGIDF-----------------SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 215
           L+VL                      S+ N      T +  L  L  L    N++    P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 216 DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLS 254
                L +L  ++L NN +S   P  L   S L  + L+
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 28/229 (12%), Positives = 60/229 (26%), Gaps = 19/229 (8%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
              +   I    + +   + +  +  ++        +   ++    E +  L N   + L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITT----LSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 63  GGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPAC 122
             N++    P+          L     K   +I                 +    +  + 
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
              L            L  +               S           + NL  L  +   
Sbjct: 131 LQVL---------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN 231
            N  S + P  +  L NL  + L  N++    P    +  +L  + L+N
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 8e-09
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 361 DEFSENNLIGKGGFGSVYKARLGDRME----VAVKVFN----LQCGRAFESFDVECEMMK 412
           + F    ++G G +G V+  R     +     A+KV      +Q  +  E    E ++++
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 413 NIRHRNLIKILHGVAVITFTVCLCLFHH 440
           +IR    +  LH        + L L + 
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYI 111

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 355 ELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKN 413
           EL+   +++     +G+G FG V++      +     K   ++ G        E  ++  
Sbjct: 2   ELY---EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNI 57

Query: 414 IRHRNLIKIL 423
            RHRN++ + 
Sbjct: 58  ARHRNILHLH 67

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 366 NNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRHRNLIKI 422
           +  IG+G F +VYK       +EVA      +       + F  E EM+K ++H N+++ 
Sbjct: 14  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVR- 72

Query: 423 LHGVAVITFTVCLCLF 438
            +     T     C+ 
Sbjct: 73  FYDSWESTVKGKKCIV 88

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 361 DEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAF-ESFDVECEMMKN 413
           +      ++G G FG V  A        G  ++VAVK+   +   +  E+   E +MM  
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 414 I-RHRNLIKILHGVAVITFTVCLCL 437
           +  H N++  L G   ++  + L  
Sbjct: 97  LGSHENIVN-LLGACTLSGPIYLIF 120

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 362 EFSENNL-----IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFES-FDVECE 409
           E+  NN+     IG+G FG V++AR            VAVK+   +     ++ F  E  
Sbjct: 9   EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 68

Query: 410 MMKNIRHRNLIKILH 424
           +M    + N++K+L 
Sbjct: 69  LMAEFDNPNIVKLLG 83

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRH 416
           D+F     +G G FG V   +        A+K+ +   +   +  E    E  +++ +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 417 RNLIKILHGVAVITFTVCLCLFHH 440
             L+K+       +    +  +  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVA 124

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 361 DEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAF-ESFDVECEMMKN 413
           +  S    +G G FG V +A           M VAVK+          E+   E +++  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 414 I-RHRNLIKILH 424
           +  H N++ +L 
Sbjct: 83  LGNHMNIVNLLG 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 86  LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT 145
              N     I         L  L++  NKL   LPA    L  L       N L  VP  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPEL 322

Query: 146 FWNLKDILNLNFSSNFLTS--PLPLEIGNLKV 175
             NLK    L+   N L     +P  + +L++
Sbjct: 323 PQNLK---QLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 113 NKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGN 172
           N  S  + +      SL  +++ +NKL  +P     L+    L  S N L   +P    N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAE-VPELPQN 325

Query: 173 LKVLIGIDFSMNNFSGVIPTEIGGLKNL 200
           LK L       N      P     +++L
Sbjct: 326 LKQL---HVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA 240
           + +N  S  I +      +LE L +  N+L   +P        L+ L  S N+L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 241 SLEKLSYLENLNLSFNKLEGEIP 263
             + L   + L++ +N L  E P
Sbjct: 322 LPQNL---KQLHVEYNPLR-EFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 145 TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLF 204
            F  L ++    +  N  ++ +         L  ++ S N     +P        LE L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLI 310

Query: 205 LGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYL 248
             +N L   +P+      +LK L++  N L    P   E +  L
Sbjct: 311 ASFNHLA-EVPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 3   NCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNL 62
              SL  + +SNN L        +  L   LE       +++  +PE   NL     +++
Sbjct: 282 LPPSLEELNVSNNKL------IELPALPPRLERLIASFNHLA-EVPELPQNLKQ---LHV 331

Query: 63  GGNKLNGSIPITLSKLQKLQ 82
             N L    P     ++ L+
Sbjct: 332 EYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 204 FLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP 263
               N     I        SL+ LN+SNN L   +PA   +   LE L  SFN L  E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320

Query: 264 RGGSFGNFSAESFEGNEL 281
                 N      E N L
Sbjct: 321 --ELPQNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 100 CHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLK 150
           C   + + L+L+   LS SLP    +L SL       N LT +P    +LK
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLTELPELPQSLK 81

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNK 257
           +    L L    L  S+P+       L+ L  S N+L+  +P   + L  L   N +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 258 LEGEIP 263
           L    P
Sbjct: 93  LSDLPP 98

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHR 417
            ++ +   IG+G +G+V+KA+       VA+K   L         S   E  ++K ++H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 418 NLIKILH 424
           N++++  
Sbjct: 62  NIVRLHD 68

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 361 DEFSENNLIGKGGFGSVYKAR------LGDRMEVAVKVFNLQCGRA-FESFDVECEMMKN 413
           D       +G+G FG V +A             VAVK+       +   +   E +++ +
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 414 IRHRNLIKILHGVAVITFTVCLCLFHH 440
           I H   +  L G         + +   
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEF 99

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.1 bits (124), Expect = 5e-08
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
            IG+G FG +++   L +  +VA+K    +          E    K +     I  ++  
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--PQLRDEYRTYKLLAGCTGIPNVYYF 69

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 5e-08
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN---LQCGRAFESFDVECE-MMKNIR 415
           ++F  + ++GKG FG V+ A         A+K      +      E   VE   +     
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 416 HRNLIKILHGVAVITFTVCLCLFHHS 441
           H  L   +         +   + + +
Sbjct: 62  HPFLTH-MFCTFQTKENLFFVMEYLN 86

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.9 bits (121), Expect = 5e-08
 Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 10/68 (14%)

Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNL----------QCGRAFESFDVECEMMKNIRH 416
            L+G+G   +V+        E  VK   +          +       F V          
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 417 RNLIKILH 424
           R L K+  
Sbjct: 66  RALQKLQG 73

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 6e-08
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNI 414
               ++ +   IG+G FG V+KAR      +VA+K   ++        +   E ++++ +
Sbjct: 7   DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 66

Query: 415 RHRNLIKILH 424
           +H N++ ++ 
Sbjct: 67  KHENVVNLIE 76

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 7e-08
 Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 348 WRTFSYLELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDV 406
           W   S++  +   D++     +G+G +  V++A  + +  +V VK+      +  +    
Sbjct: 22  WDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKR--- 78

Query: 407 ECEMMKNIR-HRNLIKILH 424
           E ++++N+R   N+I +  
Sbjct: 79  EIKILENLRGGPNIITLAD 97

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 5/155 (3%)

Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPL 168
           +L   ++   L    S        +L    L S P         + LN  S+   + L +
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAAT-LRI 59

Query: 169 EIGNLKVLIGIDFSMNNFSGV--IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKF 226
              N+  L+ ++ S N    +  + + +    NL+ L L  N L+          + L+ 
Sbjct: 60  IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 227 LNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGE 261
           L L  N+LS         +S +        +L+G 
Sbjct: 120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGH 154

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
            +G G F +V+ A+ + +   VA+K+         E+ + E ++++ +   +  K     
Sbjct: 20  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYT-EAAEDEIKLLQRVNDADNTKEDSMG 78

Query: 427 AVITFTVCLCLFHH 440
           A     +     H 
Sbjct: 79  ANHILKLLDHFNHK 92

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 1e-07
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 357 FRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN--LQCGRAFESFDVECEMMKN 413
           F     +     IG G  G V  A        VA+K  +   Q     +    E  +MK 
Sbjct: 13  FTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC 72

Query: 414 IRHRNLIKILH 424
           + H+N+I +L+
Sbjct: 73  VNHKNIISLLN 83

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 358 RATDEFSENNLIGKGGFGSVYKAR--LGDRMEVAVKVFNLQCG--RAFESFDVECEMMKN 413
           RA  ++     IG+G +G V+KAR        VA+K   +Q G      S   E  ++++
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 414 I---RHRNLIKILH 424
           +    H N++++  
Sbjct: 64  LETFEHPNVVRLFD 77

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 3/160 (1%)

Query: 128 SLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNF 186
               V      L  +P           L  + N L       + G L  L+ ++   N  
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 187 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLS 246
           +G+ P    G  +++ L LG N+++      F  L  LK LNL +N +S  +P S E L+
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 247 YLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSP 286
            L +LNL+ N                 +S  G    CG+P
Sbjct: 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 93  GSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDI 152
                    L +L  L+L  N++S  +P  F +L SL  ++L SN         W  + +
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151

Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF 186
              + +        P ++ ++++    D   + F
Sbjct: 152 RKKSLNGGAARCGAPSKVRDVQIK---DLPHSEF 182

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 44/264 (16%), Positives = 85/264 (32%), Gaps = 19/264 (7%)

Query: 12  LSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNG-S 70
           L+   L    P  +   LS  +  FR     +   + E  S       ++L  + +   +
Sbjct: 7   LTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVST 62

Query: 71  IPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDG--NKLSGSLPACFSNLTS 128
           +   LS+  KLQ L LE  +L   I + +   + L RL+L G       +L    S+ + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 129 LRIVSLGSNKLTSVPLTFWNLKD--------ILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
           L  ++L      +       +           L+    +   +    L      ++    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGY-NRLQGSIPDSFGDLISLKFLNLSNNNLSGAIP 239
                       E   L  L++L L     +        G++ +LK L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 240 ASLEKLSYLENLNLSFNKLEGEIP 263
              E L    +L ++ +       
Sbjct: 243 LLKEALP---HLQINCSHFTTIAR 263

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 361 DEFSENNLIGKGGFGSVYKARL--------GDRMEVAVKVFNLQCG-RAFESFDVECEMM 411
           D       +G+G FG V  A              +VAVK+       +       E EMM
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 412 KNI-RHRNLIKILH 424
           K I +H+N+I +L 
Sbjct: 73  KMIGKHKNIINLLG 86

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 11/66 (16%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNL 419
           + +    ++G+G    V +        E AVK+ ++  G +F + +V+      ++  ++
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 420 IKILHG 425
           ++ + G
Sbjct: 63  LRKVSG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 6e-07
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 199 NLEYLFLGYNRLQGS-IPDSFGDLISLKFLNLSNNNLSG----AIPASLEKLSYLENLNL 253
           +++ L +    L  +   +    L   + + L +  L+      I ++L     L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 254 SFNKLEGEIPR 264
             N+L      
Sbjct: 63  RSNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 3e-06
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 198 KNLEYLFLGYNRLQG----SIPDSFGDLISLKFLNLSNNNLSGAIPASL-----EKLSYL 248
             L  L+L    +      S+  +     SL+ L+LSNN L  A    L     +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 249 ENLNLSFNKLEGEIPR 264
           E L L       E+  
Sbjct: 429 EQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 4e-06
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 172 NLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLQG----SIPDSFGDLISLKF 226
           +++ L   D      S     E+   L+  + + L    L       I  +     +L  
Sbjct: 3   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 227 LNLSNNNLSGAIPASL-----EKLSYLENLNLS 254
           LNL +N L       +          ++ L+L 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 172 NLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLI----- 222
            L+VL     +  + S      +   +    +L  L L  N L  +      + +     
Sbjct: 370 VLRVL---WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 223 SLKFLNLSNNNLSGAIPASLEKL 245
            L+ L L +   S  +   L+ L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 5/91 (5%)

Query: 151 DILNLNFSSNFLT-SPLPLEIGNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFL 205
           DI +L+     L+ +     +  L+    +       +      I + +     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 206 GYNRLQGSIPDSFGDLISLKFLNLSNNNLSG 236
             N L           +      +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 56  NSTIVNLGGNKLNGS-IPITLSKLQKLQGLGLEDNKLEG----SIPDDICHLAELYRLDL 110
           +   +++   +L+ +     L  LQ+ Q + L+D  L       I   +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 111 DGNKLSGS-----LPACFSNLTSLRIVSLGSN 137
             N+L        L    +    ++ +SL + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 31  HSLEDFRMYNCNISG----GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQK-----L 81
             L    + +C++S      +   +    +   ++L  N L  +  + L +  +     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 82  QGLGLEDNKLEGSIPDDICHLAELY 106
           + L L D      + D +  L +  
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 81  LQGLGLEDNKLEGSIPDDIC-HLAELYRLDLDGNKLSG----SLPACFSNLTSLRIVSLG 135
           +Q L ++  +L  +   ++   L +   + LD   L+      + +      +L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 136 SNKLTS 141
           SN+L  
Sbjct: 64  SNELGD 69

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 36/200 (18%), Positives = 80/200 (40%), Gaps = 15/200 (7%)

Query: 52  SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD 111
           + L       LG   +     ++ + L ++  L  +   ++ SI D + +L  L +++  
Sbjct: 15  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFS 70

Query: 112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIG 171
            N+L+        NLT L  + + +N++  +              F++          + 
Sbjct: 71  NNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 172 NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN 231
           NL  L     ++++ S +               L ++  Q +      +L +L+ L++S+
Sbjct: 129 NLNRLELSSNTISDISALSGLTS-------LQQLNFSSNQVTDLKPLANLTTLERLDISS 181

Query: 232 NNLSGAIPASLEKLSYLENL 251
           N +S    + L KL+ LE+L
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECE-MMKNIRHRNLIKILH 424
           ++G G  G V +      + + A+K+      +       E E   +  +  ++++I+ 
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKML-----QDCPKARREVELHWRASQCPHIVRIVD 72

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 368 LIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFES------FDVECEMMKNIR--HRN 418
           L+G GGFGSVY    + D + VA+K         +          +E  ++K +      
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 419 LIKILH 424
           +I++L 
Sbjct: 71  VIRLLD 76

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 21/232 (9%), Positives = 49/232 (21%), Gaps = 10/232 (4%)

Query: 6   SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGN 65
           S  +     + +  I P     +L  +  + R     +        S   +   + +  N
Sbjct: 9   SNRVFLCQESKVTEI-PS----DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 66  KLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLS-----GSLP 120
            +   I   +            +        +            L  +            
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 121 ACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID 180
                   L I    +              + + L  + N +           ++     
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 181 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNN 232
              NN   +      G      L +   R+         +L  L+  +  N 
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 9/44 (20%), Positives = 13/44 (29%)

Query: 214 IPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNK 257
             D F        L++S   +       LE L  L   +    K
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)

Query: 95  IPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP 143
             D     +    LD+   ++         NL  LR  S     L  +P
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 3/130 (2%)

Query: 123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS 182
           ++N    R + L   K+  +      L     ++FS N +          L+ L  +  +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVN 71

Query: 183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQG-SIPDSFGDLISLKFLNLSNNNLSGAIPAS 241
            N    +       L +L  L L  N L      D    L SL +L +  N ++      
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 242 LEKLSYLENL 251
           L  +  +  +
Sbjct: 132 LYVIYKVPQV 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 8/88 (9%), Positives = 25/88 (28%), Gaps = 2/88 (2%)

Query: 217 SFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESF 276
            + + +  + L+L    +   I      L   + ++ S N++  ++              
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLV 70

Query: 277 EGNELLCGSPNLQVPPCKTSIHHTSWKN 304
             N +      L       +    +  +
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNS 98

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 202 YLFLGYNRLQGSIPDSFGD------LISLKFLNLSNNNLSGAIPASL-----EKLSYLEN 250
            L L    L      +  D       I L+ L L  N +      +L     EK+  L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 251 LNLSFNKLEGE 261
           L L+ N+   E
Sbjct: 307 LELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 5/109 (4%)

Query: 198 KNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSG----AIPASLEKLSYLENLNL 253
           K+L+   +     + S+     +  S+K + LS N +       +  ++     LE    
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 254 SFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTSIHHTSW 302
           S                   ++      L            T+      
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 115

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 11/87 (12%)

Query: 86  LEDNKLEGSIPDDI------CHLAELYRLDLDGNKLSGS-----LPACFSNLTSLRIVSL 134
           L D  L       +           L  L L  N++               +  L  + L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 135 GSNKLTSVPLTFWNLKDILNLNFSSNF 161
             N+ +        ++++ +       
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRGEL 336

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 2/107 (1%)

Query: 178 GIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP-DSFGDLISLKFLNLSNNNLSG 236
           G+  + +         + G +NL  L++   +    +       L  L+ L +  + L  
Sbjct: 12  GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 237 AIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC 283
             P +      L  LNLSFN LE    +     +       GN L C
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	499
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.87
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.87
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.87
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.87
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.86
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.86
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.86
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.86
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.86
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.86
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.85
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.85
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.85
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.85
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.85
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.84
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.84
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.84
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.84
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.84
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.83
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.83
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.83
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.83
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.83
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.83
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.83
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.83
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.83
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.82
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.82
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.81
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.81
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.81
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.81
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.8
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.8
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.8
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.8
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.79
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.79
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.79
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.78
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.78
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.77
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.76
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.76
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.76
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.76
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.75
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.75
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.74
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.72
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.43
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	95.73
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	86.78
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	81.75
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	80.69

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=9.7e-33  Score=263.73  Aligned_cols=257  Identities=32%  Similarity=0.582  Sum_probs=235.9

Q ss_pred             cccEEEcccCCCcc--cCCccccCCCCCCEEeccC-CcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEE
Q 010856           32 SLEDFRMYNCNISG--GIPEEISNLTNSTIVNLGG-NKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRL  108 (499)
Q Consensus        32 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  108 (499)
                      +++.|+|++|++++  .+|..+.++++|++|+|++ |++++.+|..|.++++|++|+|++|++.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            59999999999987  4788999999999999987 88998899999999999999999999999889999999999999


Q ss_pred             eeecCCCCCcCCccccCCccCCeeeccccCCCC-CCccccCCCCC-cEEEcCCCcCCCCCcccccCCCCccEEEccCCcc
Q 010856          109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS-VPLTFWNLKDI-LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF  186 (499)
Q Consensus       109 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  186 (499)
                      ++++|.+.+..|..+..++.|+.+++++|.++. +|..+..+.++ +.+++++|++++..+..+..+..+ .++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            999999999999999999999999999999985 88888888876 899999999998888888877655 799999999


Q ss_pred             cccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCC
Q 010856          187 SGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGG  266 (499)
Q Consensus       187 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  266 (499)
                      .+..|..+..+++|+.+++++|.+.+.+ ..+..+++|+.|++++|++++.+|..+.++++|++|+|++|+|+|.+|...
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            9999999999999999999999998654 468889999999999999999999999999999999999999999999887


Q ss_pred             CCCCccccccCCCcCCCCCCCCCCCCC
Q 010856          267 SFGNFSAESFEGNELLCGSPNLQVPPC  293 (499)
Q Consensus       267 ~~~~l~~~~l~~N~~~c~~~~~~~~~~  293 (499)
                      .+..+..+++.||+.+||.|   +|+|
T Consensus       289 ~L~~L~~l~l~~N~~l~g~p---lp~c  312 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSP---LPAC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTT---SSCC
T ss_pred             cCCCCCHHHhCCCccccCCC---CCCC
Confidence            88899999999999999975   3566

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=8.7e-31  Score=250.05  Aligned_cols=251  Identities=30%  Similarity=0.446  Sum_probs=227.0

Q ss_pred             CCCEEECcCCCCCcc--CChhccccccccccEEEccc-CCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCC
Q 010856            6 SLTLIYLSNNPLDGI--LPKTSVGNLSHSLEDFRMYN-CNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQ   82 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~--~~~~~~~~l~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   82 (499)
                      +++.|+|++|.+++.  .|. .+++++ +|++|+|++ |++++.+|..|+++++|++|+|++|++.+..+..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~-~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS-SLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG-GGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCCh-HHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            589999999999874  566 889999 999999987 899999999999999999999999999999999999999999


Q ss_pred             eEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccC-CeeeccccCCCC-CCccccCCCCCcEEEcCCC
Q 010856           83 GLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSL-RIVSLGSNKLTS-VPLTFWNLKDILNLNFSSN  160 (499)
Q Consensus        83 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n  160 (499)
                      .+++++|.+....|..+..++.|+.+++++|.+.+..|..+..+..+ +.+++++|+++. .|..+..+. ...++++.+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999999999999999999999999999999999999988888876 889999999987 555565554 557999999


Q ss_pred             cCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcc
Q 010856          161 FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA  240 (499)
Q Consensus       161 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  240 (499)
                      ...+..+..+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|++++.+|..|..+++|++|+|++|++++.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            9988899999999999999999999987654 688899999999999999999999999999999999999999988884


Q ss_pred             cccCCCCCCEEEccCCcC-ccc
Q 010856          241 SLEKLSYLENLNLSFNKL-EGE  261 (499)
Q Consensus       241 ~~~~l~~L~~L~l~~N~l-~~~  261 (499)
                       +..+++|+.+++++|+. .|.
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEEST
T ss_pred             -cccCCCCCHHHhCCCccccCC
Confidence             57889999999999984 443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=2.9e-27  Score=224.50  Aligned_cols=267  Identities=23%  Similarity=0.283  Sum_probs=226.8

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      .++++|.++++++.+++.     +++++++|+|++|+|+.+.+.+|.++++|++|++++|.+..+.|..|.++++|+.|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~-----l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD-----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS-----CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCCccCCC-----CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            467889999999866432     345899999999999988778899999999999999999988899999999999999


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC---CCccccCCCCCcEEEcCCCcC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS---VPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      +++|+++.. |..  ....++.|++.+|.+....+..+.....+..++...|....   .+..+..+++|+.+++++|.+
T Consensus        86 l~~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          86 LSKNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CCSSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccCCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            999999854 433  34578999999999998877778888889999998887654   345678899999999999998


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      +.. +..  ..++|+.|++++|.++...+..|.+++.++.|++++|.+++..+..+.++++|++|+|++|+|+. +|..+
T Consensus       163 ~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l  238 (305)
T d1xkua_         163 TTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL  238 (305)
T ss_dssp             CSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTT
T ss_pred             ccc-Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-ccccc
Confidence            864 332  35789999999999998889999999999999999999999889999999999999999999995 57789


Q ss_pred             cCCCCCCEEEccCCcCcccCCCC-------CCCCCccccccCCCcCCCC
Q 010856          243 EKLSYLENLNLSFNKLEGEIPRG-------GSFGNFSAESFEGNELLCG  284 (499)
Q Consensus       243 ~~l~~L~~L~l~~N~l~~~~~~~-------~~~~~l~~~~l~~N~~~c~  284 (499)
                      ..+++|+.|++++|+|+......       .....+..+++.||||.+.
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            99999999999999998643221       2345678899999998764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.9e-27  Score=223.62  Aligned_cols=248  Identities=21%  Similarity=0.280  Sum_probs=218.0

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      +++++|+|++|+|+.+.+. .+.+++ +|++|++++|.+..+.|.+|.++++|++|++++|+++.+...   ....++.|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~-~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDG-DFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTT-TTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEE
T ss_pred             CCCCEEECcCCcCCCcChh-Hhhccc-cccccccccccccccchhhhhCCCccCEecccCCccCcCccc---hhhhhhhh
Confidence            6799999999999987665 788888 999999999999998899999999999999999999955432   34578999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCC--CcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcC
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLS--GSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFL  162 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  162 (499)
                      ++.+|.+....+..+.....+..++...|...  ...+..+..+++|+.+++++|.++.+|..+  +++|+.|++++|.+
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~  183 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKI  183 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcC
Confidence            99999999877777888888999999888654  334567888999999999999999987654  58999999999999


Q ss_pred             CCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccc
Q 010856          163 TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASL  242 (499)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  242 (499)
                      +...+..|.+++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|..|..+++|+.|++++|+|+......|
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhc
Confidence            9888899999999999999999999999999999999999999999999 457789999999999999999997655444


Q ss_pred             ------cCCCCCCEEEccCCcCcc
Q 010856          243 ------EKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       243 ------~~l~~L~~L~l~~N~l~~  260 (499)
                            ..+++|+.|++++|+++.
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cCcchhcccCCCCEEECCCCcCcc
Confidence                  457889999999999973

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.3e-28  Score=226.64  Aligned_cols=207  Identities=28%  Similarity=0.265  Sum_probs=111.4

Q ss_pred             CCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee-cCCCCCcCCccccCCccCCeeecc
Q 010856           57 STIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD-GNKLSGSLPACFSNLTSLRIVSLG  135 (499)
Q Consensus        57 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~  135 (499)
                      +++|+|++|+|+.+.+.+|.++++|++|++++|++..+.+..+..+..++.+... .|.++...+..|.++++|+.|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            4444444444443333444444444444444444444444444444444444332 333333444444555555555555


Q ss_pred             ccCCCCCC-ccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCC
Q 010856          136 SNKLTSVP-LTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSI  214 (499)
Q Consensus       136 ~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  214 (499)
                      +|.+..++ ..+...++|+.+++++|.++++.+..|..+++|+.|++++|++++..+..|.++++|+++++++|+++++.
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            55544432 23334455555555555555544555555566666666666666555666666666666666666666666


Q ss_pred             CccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCC
Q 010856          215 PDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIP  263 (499)
Q Consensus       215 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  263 (499)
                      |..|..+++|++|++++|++.+..+..|..+++|++|++++|++.+..+
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            6666666666666666666666666666666666666666666665443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.4e-28  Score=226.60  Aligned_cols=252  Identities=22%  Similarity=0.254  Sum_probs=214.7

Q ss_pred             CEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecc
Q 010856            8 TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLE   87 (499)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   87 (499)
                      ..++.++++++.+ |.    .+|.++++|+|++|+|+.+.+.+|.++++|++|++++|++..+.+..+..+..++.++..
T Consensus        14 ~~v~c~~~~L~~i-P~----~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQAV-PV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCSSC-CT----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCCCCCCcc-CC----CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            4568888888854 43    245689999999999998888899999999999999999998888889999999998765


Q ss_pred             -cccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCc-cccCCCCCcEEEcCCCcCCCC
Q 010856           88 -DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSP  165 (499)
Q Consensus        88 -~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  165 (499)
                       .|.++...+..|.++++|++|++++|.+....+..+...++|+.+++++|+++.++. .+..+++|+.|++++|+++.+
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence             667777778889999999999999999998888888999999999999999999864 577889999999999999998


Q ss_pred             CcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCC
Q 010856          166 LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKL  245 (499)
Q Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l  245 (499)
                      .+..|.++++|+.+++++|++++..|..|.++++|++|++++|++.+..+..|..+++|+.|++++|++...-+ ...-.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~  247 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLW  247 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHH
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHH
Confidence            88999999999999999999999999999999999999999999999888999999999999999999874322 11111


Q ss_pred             CCCCEEEccCCcCcccCCCC
Q 010856          246 SYLENLNLSFNKLEGEIPRG  265 (499)
Q Consensus       246 ~~L~~L~l~~N~l~~~~~~~  265 (499)
                      ..++.+....+.+.+..|..
T Consensus       248 ~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         248 AWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHHHHCCSEECCCBEEESGG
T ss_pred             HHHHhCcCCCCceEeCCchH
Confidence            23445555667777655543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6e-26  Score=222.48  Aligned_cols=258  Identities=24%  Similarity=0.350  Sum_probs=165.7

Q ss_pred             CCCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCe
Q 010856            4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQG   83 (499)
Q Consensus         4 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   83 (499)
                      +.+|++|++++|+|++. .  .+..++ +|++|++++|+|+++.  .|+++++|++|++++|++++..+  +.++++|+.
T Consensus        43 l~~l~~L~l~~~~I~~l-~--gl~~L~-nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~  114 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI-D--GVEYLN-NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTG  114 (384)
T ss_dssp             HTTCCEEECCSSCCCCC-T--TGGGCT-TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hCCCCEEECCCCCCCCc-c--ccccCC-CCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc--ccccccccc
Confidence            46788888888888764 1  455666 8888888888888653  38888888888888888875433  778888888


Q ss_pred             EecccccccccC---------------------------------------------------------------Ccccc
Q 010856           84 LGLEDNKLEGSI---------------------------------------------------------------PDDIC  100 (499)
Q Consensus        84 L~L~~n~l~~~~---------------------------------------------------------------~~~~~  100 (499)
                      |++++|.+++..                                                               ...+.
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            888776654210                                                               11234


Q ss_pred             CcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEE
Q 010856          101 HLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGID  180 (499)
Q Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  180 (499)
                      .+++++.+++++|.+++..+  +..+++|+.|++++|++++++ .+..+++|+.|++++|.+++..  .+..+++|+.|+
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCC--cccccccCCEee
Confidence            45667777777777775543  344567777777777777655 4566677777777777776543  356667777777


Q ss_pred             ccCCcccccCc--------------------ccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcc
Q 010856          181 FSMNNFSGVIP--------------------TEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPA  240 (499)
Q Consensus       181 l~~n~l~~~~~--------------------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  240 (499)
                      +++|++++..+                    ..+..+++++.|++++|++++..  .+..+++|+.|++++|++++. + 
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-  345 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-  345 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-
Confidence            77776654321                    22444556666666666665432  255666666666666666532 2 


Q ss_pred             cccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCC
Q 010856          241 SLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGN  279 (499)
Q Consensus       241 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N  279 (499)
                      .+..+++|++|++++|++++..| ...++.++.+++++|
T Consensus       346 ~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            45566666666666666665433 344555666666555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=213.40  Aligned_cols=201  Identities=25%  Similarity=0.205  Sum_probs=124.2

Q ss_pred             cCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCe
Q 010856           52 SNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRI  131 (499)
Q Consensus        52 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  131 (499)
                      .+...+.+++.+++.++. +|..+.  ++|++|+|++|+|++..+..|.++++|++|+|++|+++...  .++.+++|+.
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence            345566667788877774 444342  46777778777777666667777777777777777777432  3456677777


Q ss_pred             eeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCC
Q 010856          132 VSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ  211 (499)
Q Consensus       132 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  211 (499)
                      |++++|+++..+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.++...+..+..+++|+.|++++|+++
T Consensus        82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            77777777766666666666666666666666655555555666666666666665555555555555555555555555


Q ss_pred             CCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcC
Q 010856          212 GSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKL  258 (499)
Q Consensus       212 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  258 (499)
                      +..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            555555555555555555555555 3344444445555554444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=206.88  Aligned_cols=202  Identities=26%  Similarity=0.250  Sum_probs=102.6

Q ss_pred             CCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcC
Q 010856           79 QKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFS  158 (499)
Q Consensus        79 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~  158 (499)
                      ..+.+++.++++++. +|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|+|+.++. +..+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccc
Confidence            334444555555552 333331  345555555555554444455555555555555555555442 3445555555555


Q ss_pred             CCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccC
Q 010856          159 SNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAI  238 (499)
Q Consensus       159 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  238 (499)
                      +|+++. .+..+..+++|+.|++++|.+....+..+..+.++++|++++|.++...+..+..+++|+.+++++|++++..
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             cccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            555543 2334455555555555555555544455555555555555555555444455555555555555555555555


Q ss_pred             cccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcCCCCC
Q 010856          239 PASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS  285 (499)
Q Consensus       239 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~~c~~  285 (499)
                      +..|..+++|++|+|++|+|+...+.....+.++.+++.||||.|+|
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCc
Confidence            55555555555555555555532222233444555555555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=1.4e-24  Score=212.64  Aligned_cols=253  Identities=22%  Similarity=0.326  Sum_probs=191.0

Q ss_pred             ECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEeccccc
Q 010856           11 YLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNK   90 (499)
Q Consensus        11 ~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   90 (499)
                      .+..+.+++....   ..+. +|++|++++|+|+.+  +.+..+++|++|+|++|+|++..+  +.++++|++|++++|+
T Consensus        28 ~l~~~~~~~~~~~---~~l~-~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~   99 (384)
T d2omza2          28 VLGKTNVTDTVSQ---TDLD-QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   99 (384)
T ss_dssp             HTTCSSTTSEECH---HHHT-TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HhCCCCCCCccCH---HHhC-CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccc
Confidence            4556666665443   3445 899999999999865  468899999999999999996543  8999999999999999


Q ss_pred             ccccCCccccCcccccEEeeecCCCCCcC---------------------------------------------------
Q 010856           91 LEGSIPDDICHLAELYRLDLDGNKLSGSL---------------------------------------------------  119 (499)
Q Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------------------------------------  119 (499)
                      +.+..  .+..+++|+.|++++|.+++..                                                   
T Consensus       100 i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (384)
T d2omza2         100 IADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL  177 (384)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTC
T ss_pred             ccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence            98653  4889999999999988765311                                                   


Q ss_pred             ------------CccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCccc
Q 010856          120 ------------PACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFS  187 (499)
Q Consensus       120 ------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  187 (499)
                                  ...+..+++++.+++++|.++.++. ....++|++|++++|.+++.  ..+..+++|+.|++++|.++
T Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  254 (384)
T d2omza2         178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  254 (384)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccccccccccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccC
Confidence                        1234456789999999999998764 56678999999999999864  46788999999999999998


Q ss_pred             ccCcccccCCcCCceeeCcCCcCCCCCC--------------------ccccCCCCCCEEeCCCCcCCccCcccccCCCC
Q 010856          188 GVIPTEIGGLKNLEYLFLGYNRLQGSIP--------------------DSFGDLISLKFLNLSNNNLSGAIPASLEKLSY  247 (499)
Q Consensus       188 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------------------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  247 (499)
                      +..  .+..+++|++|++++|++++..+                    ..+..+++++.|++++|++++..  .+..+++
T Consensus       255 ~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~  330 (384)
T d2omza2         255 NLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTK  330 (384)
T ss_dssp             CCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTT
T ss_pred             CCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCC
Confidence            654  47889999999999998875421                    22444566666677777666543  2566677


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCccccccCCCcC
Q 010856          248 LENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       248 L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~  281 (499)
                      |++|++++|++++ ++....+++++.+++++|..
T Consensus       331 L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         331 LQRLFFANNKVSD-VSSLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             CCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcC
Confidence            7777777777664 33344556667777766653

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-23  Score=196.29  Aligned_cols=136  Identities=18%  Similarity=0.208  Sum_probs=111.7

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .+|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++...+  ..++++|
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~ivmE   97 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--ELWVVME   97 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECC--EEEEEEE
Confidence            4699999999999999999995 579999999998766556788999999999999999999999998744  3456778


Q ss_pred             ccCCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |+.|+.+..+...    +...+.++.|++.||+|||+      |+||.||+++.++.++++|||+++.+
T Consensus        98 y~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~  166 (293)
T d1yhwa1          98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (293)
T ss_dssp             CCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ecCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheee
Confidence            7766554444322    22344556899999998876      89999999999999999999998753

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.1e-24  Score=200.60  Aligned_cols=140  Identities=18%  Similarity=0.144  Sum_probs=110.8

Q ss_pred             HHHHhhhcccccccccCCcceEEEEEeC-CCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          356 LFRATDEFSENNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       356 ~~~~~~~~~~~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      ++...++|++.+.||+|+||+||+|+.+ +++.||||+++... ...++|.+|++++++++|||||+++|+|...+  ..
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~   88 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PF   88 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SC
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCC--ee
Confidence            3344568999999999999999999974 68999999997554 34678999999999999999999999987643  34


Q ss_pred             eeeecccCCC-ccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSAS-ASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~-~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++||+.++ +...+..      .+.....++.|+++||+|||+      |+||.|||++.++.+|++|||+++..
T Consensus        89 ~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~  165 (287)
T d1opja_          89 YIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLM  165 (287)
T ss_dssp             EEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTC
T ss_pred             EEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeec
Confidence            5567777554 4333322      222334456899999999876      89999999999999999999998754

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-23  Score=193.21  Aligned_cols=137  Identities=15%  Similarity=0.163  Sum_probs=108.1

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++...+  ..+++
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~--~~~iv   81 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN--IQYLF   81 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETT--EEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCc--eeEEE
Confidence            46799999999999999999996 579999999997654 233467899999999999999999999988743  44556


Q ss_pred             ecccC-CCcccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSS-ASASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~-~~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +||+. |++.+.+.....    ..+.++.|+++||+|||+      |+||+||++++++.++++|||+++.+
T Consensus        82 mEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~  153 (271)
T d1nvra_          82 LEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVF  153 (271)
T ss_dssp             EECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheee
Confidence            77775 455555543332    234456899999999977      89999999999999999999998753

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.7e-24  Score=195.82  Aligned_cols=138  Identities=13%  Similarity=0.129  Sum_probs=106.1

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|++.+.||+|+||+||+|+. .+|+.||+|+++...  ....+.+.+|++++++++|||||++++++.+.+....+++
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            6799999999999999999996 579999999997654  2335678999999999999999999999876444445567


Q ss_pred             ecccCCCcc-cccc--------ccccccccccccccccceee-----------ccCCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASAS-ASLV--------SSLTLSRPAKGGGFRGCVLW-----------HVGVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~-~~l~--------~~~~~~~~~~~~i~~gl~yL-----------H~~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +||+.|+.+ +.+.        ..+.....++.|++.||+||           |+++||.||+++.++.++++|||+++.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            777765543 3332        12233455578999999998           558999999999999999999999865


Q ss_pred             c
Q 010856          498 L  498 (499)
Q Consensus       498 ~  498 (499)
                      +
T Consensus       164 ~  164 (269)
T d2java1         164 L  164 (269)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.7e-24  Score=195.82  Aligned_cols=136  Identities=15%  Similarity=0.211  Sum_probs=108.8

Q ss_pred             HhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ..++|+..+.||+|+||+||+|++++++.||||+++... ...+.|.+|++++++++|||||+++|++...  .. ++++
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~--~~-~iv~   86 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE--PI-YIIT   86 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SC-EEEE
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccC--Ce-EEEE
Confidence            346789999999999999999999888899999997644 3457899999999999999999999987542  22 4566


Q ss_pred             cccCCCcc-ccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          439 HHSSASAS-ASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~-~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ||+.++.+ +.+..      .+.....++.||++||+|||+      ++||.||++++++.++++|||+++.+
T Consensus        87 Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~  159 (272)
T d1qpca_          87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLI  159 (272)
T ss_dssp             ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEc
Confidence            66655443 33322      223345567999999999866      89999999999999999999999764

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-23  Score=192.45  Aligned_cols=135  Identities=17%  Similarity=0.119  Sum_probs=105.3

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      ++|+..+.||+|+||+||+|++.+++.||||+++... ...++|.+|++++++++|||||+++|+|...+  ..++++||
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~--~~~lv~E~   81 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--PICLVFEF   81 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--SCEEEEEC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCC--ceEEEEEe
Confidence            4688899999999999999999888899999997644 34578999999999999999999999997643  34456777


Q ss_pred             cCCCc-ccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          441 SSASA-SASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       441 ~~~~~-~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +.++. .+.+...     +.....++.|+|+||+|||+      ++||.|++++.++.+|++|||+++..
T Consensus        82 ~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  151 (263)
T d1sm2a_          82 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFV  151 (263)
T ss_dssp             CTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-----
T ss_pred             cCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheec
Confidence            75553 3333221     22234467999999999876      89999999999999999999998753

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.4e-23  Score=194.31  Aligned_cols=135  Identities=19%  Similarity=0.279  Sum_probs=110.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++...+  ..++++|
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~~lvmE   89 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYEN--NLWILIE   89 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETT--EEEEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--eEEEEEe
Confidence            4588899999999999999996 579999999998776666788999999999999999999999987743  4455778


Q ss_pred             ccCCCccccc-cc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASL-VS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l-~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+.|+.+..+ ..     .+...+.++.|+++||+|||+      |+||.||+++.++.++++|||+++.
T Consensus        90 y~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~  159 (288)
T d2jfla1          90 FCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAK  159 (288)
T ss_dssp             CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             cCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhc
Confidence            8766544332 21     222344556899999999966      8999999999999999999999864

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.4e-23  Score=198.01  Aligned_cols=136  Identities=12%  Similarity=0.095  Sum_probs=110.1

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|+..+.||+|+||+||+|+. .+|+.||+|+++... ....+++.+|++++++++|||||+++++|...+  ..+++
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~--~~~iV   82 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--EISIC   82 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEE
Confidence            46899999999999999999996 579999999997654 344578999999999999999999999998743  44567


Q ss_pred             ecccCCC-ccccccc----cccccccccccccccceeecc-------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSAS-ASASLVS----SLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~-~~~~l~~----~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +||+.|+ +...+..    .+...+.++.|+++||+|||+       |+||+|||+++++.++++|||+++.
T Consensus        83 mEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~  154 (322)
T d1s9ja_          83 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  154 (322)
T ss_dssp             EECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHH
T ss_pred             EEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccc
Confidence            7777654 4433432    223344556899999999984       8999999999999999999999864

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3e-23  Score=195.06  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=100.2

Q ss_pred             hhcccccccccCCcceEEEEEeC-CC---CEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DR---MEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|+..+.||+|+||+||+|+.+ ++   ..||||.+.... ....+.|.+|++++++++|||||+++|+|...+  ..+
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~--~~~  103 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST--PVM  103 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--SCE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC--EEE
Confidence            34566789999999999999964 33   368999886544 334578999999999999999999999987643  445


Q ss_pred             eeecccCCCcccc-ccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASAS-LVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~-l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++||+.++.+.. +..     .+.....++.|||+||+|||+      ++||.|||++.++.+|++|||+++.+
T Consensus       104 iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  178 (299)
T d1jpaa_         104 IITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  178 (299)
T ss_dssp             EEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             EEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEc
Confidence            6778886664443 222     122234556899999999977      89999999999999999999998754

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.3e-23  Score=188.39  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=108.8

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      ++|+..+.||+|+||+||+|+.++++.||||+++... ...++|.+|++++++++|||||+++|+|...  ...++++||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~-~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~--~~~~iv~Ey   80 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--RPIFIITEY   80 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEECCS--SSEEEEEEC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCc-CCHHHHHHHHHHHHhcCCCceeeEEEEEeeC--CceEEEEEc
Confidence            5788999999999999999999888899999998654 3457899999999999999999999998763  344557777


Q ss_pred             cCCCc-cccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          441 SSASA-SASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       441 ~~~~~-~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +.++. ...+..     .+.....++.|+++||+|||+      +++|.|++++.++.+|++|||+++.
T Consensus        81 ~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          81 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             CTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCB
T ss_pred             cCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhhee
Confidence            76543 333221     122344567899999999987      7999999999999999999999864

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=4.9e-23  Score=194.14  Aligned_cols=135  Identities=21%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC---ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ..|+..+.||+|+||+||+|+. .+|+.||||+++....   ...+.+.+|++++++++|||||++++++...+  ..++
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~i   92 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--TAWL   92 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--EEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECC--EEEE
Confidence            4589999999999999999995 5799999999976542   23467899999999999999999999987643  4456


Q ss_pred             eecccCCCcccccc-c----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSASASASLV-S----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~~~~~l~-~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++||+.|+....+. .    .+.....++.||+.||+|||+      |+||.||++++++.++++|||++..
T Consensus        93 v~E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~  164 (309)
T d1u5ra_          93 VMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASI  164 (309)
T ss_dssp             EEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred             EEEecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccc
Confidence            77887666544322 1    223345557999999999876      8999999999999999999999864

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-22  Score=187.39  Aligned_cols=136  Identities=16%  Similarity=0.201  Sum_probs=109.4

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|++.+.||+|+||+||+|+. .+|+.||+|++.+..   ....+.+.+|++++++++|||||++++++...+  ..+
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~   82 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT--RVY   82 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--EEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECC--EEE
Confidence            46799999999999999999996 479999999997543   344677999999999999999999999998743  345


Q ss_pred             eeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++||+.| ++.+.+....    .....++.|+++||+|||+      |+||.|++++.++.++++|||+++.
T Consensus        83 ivmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~  155 (263)
T d2j4za1          83 LILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVH  155 (263)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSC
T ss_pred             EEEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeee
Confidence            57777765 4444443322    2344456899999999876      8999999999999999999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.9e-21  Score=174.69  Aligned_cols=199  Identities=17%  Similarity=0.145  Sum_probs=95.6

Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCCeEeccccccccc-CCccccCcccccEEeeec-CCCCCcCCccccCCccCCeee
Q 010856           56 NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGS-IPDDICHLAELYRLDLDG-NKLSGSLPACFSNLTSLRIVS  133 (499)
Q Consensus        56 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  133 (499)
                      ++++|+|++|+|+.+.+..|.++++|++|++++|.+... .+..|.+++.++++.+.. |++....+..|.++++|+.|+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            344444444444433333444444444444444443321 222344444444444332 334334444444444444444


Q ss_pred             ccccCCCCCCc--cccCCCCCcEEEcCCCcCCCCCcccccCCC-CccEEEccCCcccccCcccccCCcCCceeeCcCCcC
Q 010856          134 LGSNKLTSVPL--TFWNLKDILNLNFSSNFLTSPLPLEIGNLK-VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL  210 (499)
Q Consensus       134 L~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  210 (499)
                      +++|++...+.  .+..+..+..+...++.+..+.+..|..++ .++.|++++|+++.+.+..+.....++.+++++|++
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence            44444443321  122233344444444444444444444443 556666666666654444443322233334566666


Q ss_pred             CCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEcc
Q 010856          211 QGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLS  254 (499)
Q Consensus       211 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  254 (499)
                      +.+.+..|.++++|+.|++++|+|+...+..|.++++|+.+++.
T Consensus       190 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            65555566777777777777777775555556666555555443

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-22  Score=189.78  Aligned_cols=136  Identities=14%  Similarity=0.138  Sum_probs=109.3

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++++..   ....+.+.+|++++++++|||||++++++...+  ..++
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--~~~i   85 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE--KLYF   85 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSS--EEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECC--EEEE
Confidence            5799999999999999999996 579999999997543   344577999999999999999999999987643  3455


Q ss_pred             eecccCCC-cccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHSSAS-ASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++||+.|+ +.+.+...    +...+.++.|++.||+|||+      |+||+||++++++.++++|||++..+
T Consensus        86 vmEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~  158 (288)
T d1uu3a_          86 GLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVL  158 (288)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceec
Confidence            67777654 43433332    22344456899999999876      89999999999999999999998754

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.7e-23  Score=191.99  Aligned_cols=134  Identities=18%  Similarity=0.236  Sum_probs=105.0

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .++|.+.+.||+|+||+||+|+++  ..||||+++...  ....+.|.+|++++++++|||||++++++...   ..+++
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~---~~~lv   81 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP---QLAIV   81 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSS---SCEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEecc---EEEEE
Confidence            467889999999999999999863  369999997543  34567899999999999999999999987542   23456


Q ss_pred             ecccC-CCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          438 FHHSS-ASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~-~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +||+. |++.+.+...     +.....++.|||+||+|||+      ++||.|||++.++.+|++|||+++..
T Consensus        82 ~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~  154 (276)
T d1uwha_          82 TQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVK  154 (276)
T ss_dssp             EECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC-
T ss_pred             EecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeec
Confidence            77775 4444444322     22234456899999999877      89999999999999999999998653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=1.4e-20  Score=169.76  Aligned_cols=204  Identities=22%  Similarity=0.291  Sum_probs=139.5

Q ss_pred             cEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecC
Q 010856           34 EDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGN  113 (499)
Q Consensus        34 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (499)
                      ..++++.+.+++..  .++.+.+|++|++.+|.|+..  ..+..+++|++|++++|.+++..  .+..+++|+++++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccc
Confidence            33455666666443  345566777777777777643  24667777777777777776443  3667777777777777


Q ss_pred             CCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCccc
Q 010856          114 KLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTE  193 (499)
Q Consensus       114 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (499)
                      .++..  ..+.++++|+.+++++|....++ .+...+.+..+.++++.+...  ..+..+++|+.|++++|.+.+.  ..
T Consensus        96 ~~~~i--~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          96 PLKNV--SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             CCSCC--GGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ccccc--ccccccccccccccccccccccc-hhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hh
Confidence            77643  24666777777777777766544 345567777777777776543  3456677788888888877643  34


Q ss_pred             ccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEcc
Q 010856          194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLS  254 (499)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  254 (499)
                      +.++++|++|++++|++++.  ..+..+++|++|++++|++++..  .+.++++|+.|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             hcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            77788888888888888754  34778888888888888888554  37788888888886

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.9e-22  Score=190.76  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=110.3

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++++..   ....+.+.+|++++++++|||||++++++...+  ..+
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~   80 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ--QIF   80 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS--EEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCC--eee
Confidence            46799999999999999999996 579999999997542   345678999999999999999999999988743  445


Q ss_pred             eeecccCCCcccccc-cc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASASLV-SS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~l~-~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++||+.|+....+. ..    ....+.++.|++.||+|||+      ++||.|||++.++.++++|||+++..
T Consensus        81 ivmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~  154 (316)
T d1fota_          81 MIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYV  154 (316)
T ss_dssp             EEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEEC
T ss_pred             eEeeecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEe
Confidence            677887766443322 21    12234456899999999887      79999999999999999999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=1.1e-20  Score=170.41  Aligned_cols=202  Identities=19%  Similarity=0.323  Sum_probs=145.0

Q ss_pred             EECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccc
Q 010856           10 IYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDN   89 (499)
Q Consensus        10 L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   89 (499)
                      ++++.+++++...   ...+. +|++|++.+|+|+.+  ..+..+++|++|++++|.+++..+  +..+++|+.+++++|
T Consensus        24 ~~l~~~~~~d~~~---~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          24 IAAGKSNVTDTVT---QADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHTTCSSTTSEEC---HHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHhCCCCcCCcCC---HHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            4556666665533   23445 788888888888754  347788888888888888875433  777888888888888


Q ss_pred             cccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCccc
Q 010856           90 KLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLE  169 (499)
Q Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (499)
                      .++..  ..+.++++|+.++++++...+.  ..+...+.++.+.++++.+.... .+..+++|++|++++|.+++.  ..
T Consensus        96 ~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          96 PLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             CCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh-hhccccccccccccccccccc--hh
Confidence            77643  3577788888888888877643  33566677888888887776643 356677888888888877643  23


Q ss_pred             ccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCC
Q 010856          170 IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLS  230 (499)
Q Consensus       170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  230 (499)
                      +.++++|+.|++++|++++.  ..+.++++|++|++++|+++++.  .+..+++|+.|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             hcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            67788888888888888754  33777888888888888887543  37788888888876

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-22  Score=189.10  Aligned_cols=136  Identities=18%  Similarity=0.195  Sum_probs=103.0

Q ss_pred             hhcccccccccCCcceEEEEEeCC-C----CEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGD-R----MEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~-~----~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      +.|+..++||+|+||+||+|.++. +    ..||||+++.... ...++|.+|++++++++|||||+++|++...+  ..
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~--~~   84 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK--PM   84 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--SE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCC--ce
Confidence            468888999999999999999642 2    4799999976542 33567999999999999999999999987643  34


Q ss_pred             eeeecccCCCcccccc-c-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSASASASLV-S-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~-~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++|++.++...... .     .+.....++.|+++||+|||+      ++||.|||++.++.+|++|||+++.+
T Consensus        85 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  160 (283)
T d1mqba_          85 MIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  160 (283)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             EEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcc
Confidence            5567777665433321 1     122234557899999999966      89999999999999999999998764

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.84  E-value=2.8e-22  Score=192.30  Aligned_cols=136  Identities=15%  Similarity=0.134  Sum_probs=108.3

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++...+  ..++++|
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~ivmE  106 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--EMVLILE  106 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS--EEEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEEE
Confidence            5699999999999999999996 579999999998765455677899999999999999999999987633  4455777


Q ss_pred             ccCCC-ccccccc-----cccccccccccccccceeecc------CCCcccEEEe--eCCCeEEEEEEEeecc
Q 010856          440 HSSAS-ASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFV--LEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~-~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~--~~~~~~~~~f~~~~~~  498 (499)
                      |+.|+ +.+.+..     .+.....++.||+.||+|||+      |+||.||+++  .++.++++|||++..+
T Consensus       107 ~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~  179 (352)
T d1koba_         107 FLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  179 (352)
T ss_dssp             CCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             cCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceec
Confidence            77654 4333322     223344556899999999876      8999999997  4678999999998754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=172.25  Aligned_cols=219  Identities=13%  Similarity=0.075  Sum_probs=173.2

Q ss_pred             CCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCc-cCCccccCCCCCCeEe
Q 010856            7 LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNG-SIPITLSKLQKLQGLG   85 (499)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~   85 (499)
                      .+.++.++++++.+++.     ++.++++|++++|.|+.+.+.+|.++++|++|++++|.+.. +.+..|.+++++++++
T Consensus        10 ~~~i~c~~~~l~~iP~~-----l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSD-----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SSEEEEESCSCSSCCSC-----SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CCEEEEeCCCCCCcCCC-----CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            36788999998854332     34589999999999998888889999999999999999875 4466789999999999


Q ss_pred             ccc-ccccccCCccccCcccccEEeeecCCCCCcCCc-cccCCccCCeeeccccCCCCCCc-cccCC-CCCcEEEcCCCc
Q 010856           86 LED-NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNL-KDILNLNFSSNF  161 (499)
Q Consensus        86 L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~l-~~L~~L~l~~n~  161 (499)
                      +.. |.+....+..|.++++|++|++++|.+....+. .+..+..+..+...++++..++. .+..+ ..++.|++++|+
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            864 678878888899999999999999999854332 33455666677778888888653 45544 478999999999


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCC
Q 010856          162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLS  230 (499)
Q Consensus       162 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  230 (499)
                      ++.+.+..+.....++.+++++|+++.+.+..|.++++|++|++++|+++.+.+..|.++++|+.+++.
T Consensus       165 l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         165 IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            997666655544344455678899997777789999999999999999997777777777777666553

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.5e-22  Score=186.92  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=107.8

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|++.+.||+|+||+||+|+.++++.||||+++... ...+.|.+|+.++++++|||||+++|++...   ..++++|
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~---~~~lv~E   91 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---PIYIVTE   91 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---SCEEEEC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEecC---CeEEEEE
Confidence            46799999999999999999998888889999997554 3457899999999999999999999988542   2345677


Q ss_pred             ccCCCccc-ccc------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          440 HSSASASA-SLV------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~-~l~------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      |+.++... .+.      ..+.....++.||++||+|||+      ++||.||++++++.++++|||+++..
T Consensus        92 y~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~  163 (285)
T d1fmka3          92 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLI  163 (285)
T ss_dssp             CCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--
T ss_pred             ecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhc
Confidence            77655333 222      1233455667999999999987      89999999999999999999998753

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-22  Score=189.69  Aligned_cols=135  Identities=20%  Similarity=0.244  Sum_probs=108.5

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++...  ....+.+.+|++++++++|||||++++++...  ...+++
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~--~~~~iv   79 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE--NKLYLV   79 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET--TEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccc--cceeEE
Confidence            5799999999999999999996 679999999996543  23457899999999999999999999999773  355668


Q ss_pred             ecccCCCcccccc------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLV------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +|++.++....+.      ..+...+.++.|++.||+|||+      |+||+||+++.++.++++|||++..
T Consensus        80 ~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~  151 (298)
T d1gz8a_          80 FEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARA  151 (298)
T ss_dssp             EECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHH
T ss_pred             EeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCccee
Confidence            8888777544332      1223345557899999999987      7999999999999999999998754

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.3e-22  Score=189.73  Aligned_cols=136  Identities=18%  Similarity=0.130  Sum_probs=105.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCC----EEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRM----EVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .+|+..+.||+|+||+||+|+. .+|+    .||+|+++... ....++|.+|++++++++|||||+++|+|...+  ..
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~--~~   86 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--VQ   86 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS--EE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--ee
Confidence            4699999999999999999996 3454    58888886543 345678999999999999999999999997633  44


Q ss_pred             eeeecccCCCcccccccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSASASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++++.+|++...+...     +.....++.|||+||+|||+      ++||.|++++.++.+|++|||+++.+
T Consensus        87 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~  161 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  161 (317)
T ss_dssp             EEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHT
T ss_pred             EEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceec
Confidence            556677777765544322     22244557899999999877      89999999999999999999998653

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.4e-22  Score=185.43  Aligned_cols=135  Identities=15%  Similarity=0.197  Sum_probs=105.2

Q ss_pred             hhcccccc-cccCCcceEEEEEeC---CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNL-IGKGGFGSVYKARLG---DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~-lg~G~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|...+. ||+|+||+||+|.++   ++..||||+++... ....++|.+|++++++++|||||+++|++...   ..+
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~---~~~   84 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE---ALM   84 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS---SEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC---eEE
Confidence            45667674 999999999999853   35679999997654 33467899999999999999999999988652   234


Q ss_pred             eeecccCCCcccc-ccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          436 CLFHHSSASASAS-LVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       436 ~l~~~~~~~~~~~-l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++||+.++.+.. +..     ++.....++.|+|+||+|||+      ++||.|++++.++.+|++|||+++.+
T Consensus        85 lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  159 (285)
T d1u59a_          85 LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL  159 (285)
T ss_dssp             EEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcc
Confidence            5778876654333 222     222344557999999999876      89999999999999999999998754

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.83  E-value=4.2e-22  Score=190.95  Aligned_cols=137  Identities=16%  Similarity=0.184  Sum_probs=109.1

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++...+  ..++++
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~ivm  102 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--EMVMIY  102 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETT--EEEEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEEE
Confidence            45799999999999999999996 579999999997665555678999999999999999999999987633  445677


Q ss_pred             cccCC-Cccccccc-----cccccccccccccccceeecc------CCCcccEEEee--CCCeEEEEEEEeecc
Q 010856          439 HHSSA-SASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL--EPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~-~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~--~~~~~~~~f~~~~~~  498 (499)
                      ||+.| ++.+.+..     .+.....++.||+.||+|||+      ++||.||++..  ++.++++|||+++.+
T Consensus       103 E~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~  176 (350)
T d1koaa2         103 EFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL  176 (350)
T ss_dssp             CCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEEC
T ss_pred             EcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheec
Confidence            77755 44444422     222344556899999999876      89999999964  467999999998754

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=6.8e-22  Score=186.15  Aligned_cols=137  Identities=13%  Similarity=0.117  Sum_probs=98.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      .+.|+..+.||+|+||+||+|+. .+|+.||||++.+.. ....+.+.+|++++++++|||||++++++...+  ..+++
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~--~~~lv   85 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGG--HLYLI   85 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--EEEEE
Confidence            35599999999999999999996 479999999997654 233456889999999999999999999987643  34567


Q ss_pred             ecccC-CCccccccccc----cccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeecc
Q 010856          438 FHHSS-ASASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~-~~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~~  498 (499)
                      +||+. |++.+.+....    .....++.|++.||+|||+      |+||.|+++..   ++.++++|||++...
T Consensus        86 mE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~  160 (307)
T d1a06a_          86 MQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME  160 (307)
T ss_dssp             ECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC------
T ss_pred             EeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEc
Confidence            77776 45545443322    2344456899999999976      89999999953   567999999998753

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.8e-22  Score=187.88  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=109.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++++..   ....+.+.+|++++++++|||||++++++.+.+  ..+
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~--~~~   81 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--RLC   81 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS--EEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecccc--ccc
Confidence            46899999999999999999996 579999999997643   344678999999999999999999999998744  445


Q ss_pred             eeecccCCC-cccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSAS-ASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~~-~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++||+.|+ +...+.....    ..+.++.|++.||+|||+      |+||.|||++.++.++++|||+++.
T Consensus        82 iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~  154 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             cceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccc
Confidence            567777554 4344333222    344456899999999976      8999999999999999999999874

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.6e-22  Score=182.26  Aligned_cols=136  Identities=17%  Similarity=0.180  Sum_probs=103.7

Q ss_pred             cccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcc--ccceeeee
Q 010856          363 FSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVI--TFTVCLCL  437 (499)
Q Consensus       363 ~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~--~~~~~~~l  437 (499)
                      |...+.||+|+||+||+|+. .+++.||+|.+....  ....+.+.+|++++++++|||||++++++...  .....+++
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEE
Confidence            35667899999999999996 478999999997654  23456799999999999999999999998652  12334567


Q ss_pred             ecccCCCcc-cccccc----ccccccccccccccceeecc--------CCCcccEEEee-CCCeEEEEEEEeecc
Q 010856          438 FHHSSASAS-ASLVSS----LTLSRPAKGGGFRGCVLWHV--------GVDFAAFVFVL-EPGVEVICFVFEILL  498 (499)
Q Consensus       438 ~~~~~~~~~-~~l~~~----~~~~~~~~~~i~~gl~yLH~--------~~~p~~~l~~~-~~~~~~~~f~~~~~~  498 (499)
                      +||+.|+.+ +.+...    +...+.++.||++||+|||+        |+||.||++++ ++.++++|||+++..
T Consensus        91 mE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~  165 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  165 (270)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             EeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceec
Confidence            787765543 333322    22334556899999998875        68999999975 578999999998753

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.9e-22  Score=188.76  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=108.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~  436 (499)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++++..   ....+.+.+|++++++++|||||++++++...+  ..++
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~~  118 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS--NLYM  118 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccc--cccc
Confidence            5799999999999999999996 579999999997543   344678999999999999999999999987743  3344


Q ss_pred             eeccc-CCCcccccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          437 LFHHS-SASASASLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~-~~~~~~~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +++++ +|++...+...    +...+.++.|++.||+|||+      |+||.|||++.++.++++|||+++.+
T Consensus       119 v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~  191 (350)
T d1rdqe_         119 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV  191 (350)
T ss_dssp             EEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             ccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeec
Confidence            55555 44544444322    23344556899999999965      89999999999999999999998754

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-21  Score=183.70  Aligned_cols=136  Identities=17%  Similarity=0.213  Sum_probs=107.3

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC------CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC------GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~------~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++++..      ....+.+.+|++++++++|||||++++++...+  .
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~   87 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT--D   87 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS--E
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--E
Confidence            4699999999999999999996 579999999997643      123578999999999999999999999987743  4


Q ss_pred             eeeeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCC----CeEEEEEEEeecc
Q 010856          434 CLCLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP----GVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~----~~~~~~f~~~~~~  498 (499)
                      .++++||+.| ++.+.+....    ...+.++.|++.||+|||+      ++||.|++++.++    .++++|||++...
T Consensus        88 ~~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~  167 (293)
T d1jksa_          88 VILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  167 (293)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhc
Confidence            4557777765 4444443322    2344556899999999976      8999999998765    4999999998653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.2e-22  Score=188.49  Aligned_cols=142  Identities=20%  Similarity=0.168  Sum_probs=109.0

Q ss_pred             HHHHHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEE
Q 010856          355 ELFRATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVA  427 (499)
Q Consensus       355 ~~~~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~  427 (499)
                      +++...++|+..+.||+|+||+||+|+.+      +++.||||+++.... ...++|.+|++++++++||||++++++|.
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            44455678999999999999999999852      457899999976543 33567999999999999999999999987


Q ss_pred             ccccceeeeeecccC-CCccccccc----------------------------cccccccccccccccceeecc------
Q 010856          428 VITFTVCLCLFHHSS-ASASASLVS----------------------------SLTLSRPAKGGGFRGCVLWHV------  472 (499)
Q Consensus       428 ~~~~~~~~~l~~~~~-~~~~~~l~~----------------------------~~~~~~~~~~~i~~gl~yLH~------  472 (499)
                      ..+  ....+++++. |++.+.+..                            .+.....++.|+++||+|||+      
T Consensus        87 ~~~--~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHr  164 (301)
T d1lufa_          87 VGK--PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHR  164 (301)
T ss_dssp             SSS--SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             cCC--ceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEee
Confidence            633  3344566654 444333321                            111233446899999999976      


Q ss_pred             CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          473 GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       473 ~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++||.||+++.++.+|++|||+++.+
T Consensus       165 DlKp~NILld~~~~~Kl~DFGls~~~  190 (301)
T d1lufa_         165 DLATRNCLVGENMVVKIADFGLSRNI  190 (301)
T ss_dssp             CCSGGGEEECGGGCEEECCCSCHHHH
T ss_pred             EEcccceEECCCCcEEEccchhheec
Confidence            89999999999999999999998653

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.83  E-value=5.3e-22  Score=185.80  Aligned_cols=134  Identities=17%  Similarity=0.212  Sum_probs=110.1

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|+..+.||+|+||+||+|+.++|+.||||+++...  ....+.+.+|+.++++++|||||++++++...+  ..++++
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--~~~i~~   79 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK--RLVLVF   79 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--CEEEEE
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC--ceeEEE
Confidence            4789999999999999999998899999999996643  233578999999999999999999999988743  445677


Q ss_pred             cccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          439 HHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       439 ~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                      +++.++....+..     .....+.++.|++.||+|||+      |+||.||+++.++.++++|||.+.
T Consensus        80 e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~  148 (286)
T d1ob3a_          80 EHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR  148 (286)
T ss_dssp             ECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHH
T ss_pred             EeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccce
Confidence            7877776554432     223344557899999999877      899999999999999999999864

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-21  Score=181.48  Aligned_cols=129  Identities=13%  Similarity=0.128  Sum_probs=99.2

Q ss_pred             cccccCCcceEEEEEeC---CCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeeccc
Q 010856          367 NLIGKGGFGSVYKARLG---DRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHHS  441 (499)
Q Consensus       367 ~~lg~G~~g~v~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~~  441 (499)
                      +.||+|+||+||+|.++   +++.||||+++...  ....++|.+|++++++++|||||+++|+|....   .++++||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~---~~lvmE~~   89 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAES---WMLVMEMA   89 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSS---EEEEEECC
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCC---EEEEEEcC
Confidence            57999999999999853   35789999996543  233567999999999999999999999986522   34567777


Q ss_pred             CCC-ccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          442 SAS-ASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       442 ~~~-~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .++ +.+.+....    .....++.||++||+|||+      ++||.|++++.++.++++|||+++.+
T Consensus        90 ~~g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~  157 (277)
T d1xbba_          90 ELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL  157 (277)
T ss_dssp             TTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             CCCcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhc
Confidence            654 433333222    2344556899999999865      89999999999999999999998754

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-21  Score=179.82  Aligned_cols=134  Identities=19%  Similarity=0.107  Sum_probs=104.1

Q ss_pred             hhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++|++.+.||+|+||.||+|+. .|+.||||+++..  ...+.|.+|++++++++|||||+++|+|...+. ..++++|
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~-~~~lv~e   81 (262)
T d1byga_           6 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTE   81 (262)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEEC
T ss_pred             HHHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCC-cEEEEEe
Confidence            45788899999999999999998 5778999999654  345789999999999999999999999865332 2345666


Q ss_pred             cc-CCCccccccc------cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HS-SASASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~-~~~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+ +|++.+.+..      .+.....++.||++||+|||+      +++|.|++++.++.++++|||+++.
T Consensus        82 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~  152 (262)
T d1byga_          82 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  152 (262)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeeccccccee
Confidence            66 4455444432      333455667999999999987      8999999999999999999999864

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-21  Score=181.82  Aligned_cols=135  Identities=19%  Similarity=0.178  Sum_probs=97.4

Q ss_pred             hhcccccccccCCcceEEEEEe--CCC--CEEEEEEeeccC---CccHHHHHHHHHHHhcCCCCCccccceeEEccccce
Q 010856          361 DEFSENNLIGKGGFGSVYKARL--GDR--MEVAVKVFNLQC---GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~--~~~--~~vavK~~~~~~---~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~  433 (499)
                      ++|+..+.||+|+||+||+|++  .++  ..||||++++..   ....++|.+|++++++++|||||+++|++...  ..
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~--~~   85 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP--PM   85 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SC
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec--ch
Confidence            5799999999999999999985  233  368999987653   23357899999999999999999999999652  23


Q ss_pred             eeeeeccc-CCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          434 CLCLFHHS-SASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       434 ~~~l~~~~-~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      . +++||+ .|++.+.+..     .+.....++.|+|+||+|||+      ++||.||+++.++.++++|||+++.+
T Consensus        86 ~-lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~  161 (273)
T d1u46a_          86 K-MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL  161 (273)
T ss_dssp             E-EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             h-eeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhc
Confidence            3 455555 4554433322     223344556899999999877      89999999999999999999998764

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-21  Score=183.50  Aligned_cols=130  Identities=16%  Similarity=0.188  Sum_probs=101.0

Q ss_pred             ccccccCCcceEEEEEe-CCCCEEEEEEeeccCC-----ccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          366 NNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG-----RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      .++||+|+||+||+|+. .+|+.||||+++....     ...+.+.+|++++++++|||||++++++...+  ..++++|
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~--~~~ivmE   80 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS--NISLVFD   80 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT--CCEEEEE
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCC--ceeehhh
Confidence            47899999999999996 5799999999965431     12356899999999999999999999987644  3456778


Q ss_pred             ccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          440 HSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       440 ~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      |+.|+....+..     .+...+.++.||+.||+|||+      |+||.||+++.++.++++|||+++.
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~  149 (299)
T d1ua2a_          81 FMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKS  149 (299)
T ss_dssp             CCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             hhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccc
Confidence            887765554332     222344456899999999977      8999999999999999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.6e-19  Score=157.70  Aligned_cols=177  Identities=20%  Similarity=0.305  Sum_probs=107.6

Q ss_pred             EEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCC
Q 010856           36 FRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKL  115 (499)
Q Consensus        36 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (499)
                      +.+..+.+++..+  ...++++++|++++|.++..  ..+..+++|++|++++|++++..  .+.++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccc
Confidence            3455555554332  23455666666666666532  23556666666666666666432  266666666666666666


Q ss_pred             CCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCccccc
Q 010856          116 SGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG  195 (499)
Q Consensus       116 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  195 (499)
                      ....  .+.++++|+.|++++|.+..++ .+..+++|+.|++++|.+...  ..+..+++|+.|++++|++++.  ..+.
T Consensus        97 ~~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~  169 (199)
T d2omxa2          97 ADIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLA  169 (199)
T ss_dssp             CCCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGT
T ss_pred             cccc--cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--cccc
Confidence            5332  3566666667777666666543 355666777777777766542  2466667777777777777654  2366


Q ss_pred             CCcCCceeeCcCCcCCCCCCccccCCCCCCEE
Q 010856          196 GLKNLEYLFLGYNRLQGSIPDSFGDLISLKFL  227 (499)
Q Consensus       196 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  227 (499)
                      ++++|++|++++|+++++  ..+..+++|+.|
T Consensus       170 ~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            777777777777777643  346667777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3.1e-20  Score=163.72  Aligned_cols=181  Identities=24%  Similarity=0.391  Sum_probs=140.4

Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecc
Q 010856           56 NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLG  135 (499)
Q Consensus        56 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  135 (499)
                      +...+.++.+.+++..+  ...++++++|++++|.++..  +.+..+++|++|++++|++++..+  +.++++|+.|+++
T Consensus        19 ~~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~   92 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN   92 (199)
T ss_dssp             HHHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccc
Confidence            34455677777765433  34678899999999998854  357888999999999999886543  8888999999999


Q ss_pred             ccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCC
Q 010856          136 SNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP  215 (499)
Q Consensus       136 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  215 (499)
                      +|.+..++ .+..++.|+.|++++|.+...  ..+..+++|+.|++++|++...  ..+..+++|++|++++|++++.  
T Consensus        93 ~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--  165 (199)
T d2omxa2          93 NNQIADIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--  165 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--
T ss_pred             cccccccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--
Confidence            99888877 477888999999988887753  3477888888999988888743  3577888888888888888754  


Q ss_pred             ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEE
Q 010856          216 DSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENL  251 (499)
Q Consensus       216 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  251 (499)
                      ..+.++++|+.|++++|++++.  ..+..+++|+.|
T Consensus       166 ~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         166 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            3478888888888888888753  247778888765

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.81  E-value=3.3e-21  Score=178.63  Aligned_cols=136  Identities=16%  Similarity=0.201  Sum_probs=109.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc---------cHHHHHHHHHHHhcCC-CCCccccceeEEcc
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR---------AFESFDVECEMMKNIR-HRNLIKILHGVAVI  429 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~---------~~~~~~~E~~il~~l~-H~niv~l~~~~~~~  429 (499)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++++....         ..+.+.+|++++++++ |||||++++++.+.
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5799999999999999999996 57999999999765411         1346889999999997 99999999998864


Q ss_pred             ccceeeeeecccC-CCccccccc----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          430 TFTVCLCLFHHSS-ASASASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       430 ~~~~~~~l~~~~~-~~~~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +  ..++++||+. |++.+.+..    .+...+.++.||++||+|||+      +++|.|++++.++.++++|||++...
T Consensus        83 ~--~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  160 (277)
T d1phka_          83 T--FFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL  160 (277)
T ss_dssp             S--EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             c--ceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEc
Confidence            3  4456777775 455444433    233455556899999999877      89999999999999999999998753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.8e-19  Score=160.15  Aligned_cols=164  Identities=24%  Similarity=0.318  Sum_probs=97.9

Q ss_pred             CCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEc
Q 010856           78 LQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF  157 (499)
Q Consensus        78 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l  157 (499)
                      +.+|++|++++|.++...  .+..+++|++|++++|++++..  .+..+++|+.|++++|++++++ .+..+++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc-ccccccccccccc
Confidence            345555555555554321  2455555566666666555432  2445566666666666666555 3555666666666


Q ss_pred             CCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCcc
Q 010856          158 SSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGA  237 (499)
Q Consensus       158 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  237 (499)
                      ++|.+...  ..+..++.++.+++++|.+++.  ..+..+++|+.+++++|++++.  ..+..+++|+.|++++|+|++.
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred             cccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc--ccccCCCCCCEEECCCCCCCCC
Confidence            66665432  2455666666666666666532  3455667777777777777643  2366777777777777777643


Q ss_pred             CcccccCCCCCCEEEcc
Q 010856          238 IPASLEKLSYLENLNLS  254 (499)
Q Consensus       238 ~~~~~~~l~~L~~L~l~  254 (499)
                       + .+..+++|+.|+|+
T Consensus       194 -~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 -R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -G-GGTTCTTCSEEEEE
T ss_pred             -h-hhcCCCCCCEEEcc
Confidence             2 46777777777775

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.81  E-value=6.2e-21  Score=182.15  Aligned_cols=135  Identities=16%  Similarity=0.164  Sum_probs=107.8

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++..   ..+++.+|+++|+++. ||||+++++++...+....+.++
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            5799999999999999999996 57999999999753   3567899999999985 99999999998764444455577


Q ss_pred             cccCCCccccccc--cccccccccccccccceeecc------CCCcccEEEeeCCC-eEEEEEEEeecc
Q 010856          439 HHSSASASASLVS--SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPG-VEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~~l~~--~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~-~~~~~f~~~~~~  498 (499)
                      +++.++.+..+..  .+...+.++.||+.||+|||+      |+||.|||++.+++ ++++|||+++.+
T Consensus       112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~  180 (328)
T d3bqca1         112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY  180 (328)
T ss_dssp             ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEEC
T ss_pred             eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceec
Confidence            7777665444322  233345567999999999955      99999999987665 899999998753

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.9e-21  Score=185.50  Aligned_cols=138  Identities=17%  Similarity=0.123  Sum_probs=106.7

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEcccc---cee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF---TVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~---~~~  434 (499)
                      .++|...+.||+|+||+||+|+. .+|+.||||++++.. ....+++.+|+++|++++|||||++++++.....   ...
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            35699999999999999999995 589999999997654 2345678999999999999999999999865322   234


Q ss_pred             eeeecccCCCcccccc---ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++++.+|++.+.+.   ..+...+.++.|++.||+|||+      |+||.|||+++++.++++|||++..
T Consensus        87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~  158 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARV  158 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceee
Confidence            4566776776655543   2233345557899999998876      8999999999999999999999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.3e-21  Score=181.94  Aligned_cols=135  Identities=13%  Similarity=0.177  Sum_probs=106.6

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      ++|.+.+.||+|+||+||+|+. .+|+.||||+++... .+...+.+|++++++++|||||++++++...+  ..++++|
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--~~~lvmE   81 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESME--ELVMIFE   81 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--EEEEEEC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--EEEEEEe
Confidence            5799999999999999999996 478999999997643 33456889999999999999999999987643  4556777


Q ss_pred             ccCC-Ccccccccc-----ccccccccccccccceeecc------CCCcccEEEeeC--CCeEEEEEEEeecc
Q 010856          440 HSSA-SASASLVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE--PGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~-~~~~~l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~--~~~~~~~f~~~~~~  498 (499)
                      |+.| ++.+.+...     +.....++.||+.||+|||+      |+||+|++++.+  ..++++|||+++..
T Consensus        82 ~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~  154 (321)
T d1tkia_          82 FISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL  154 (321)
T ss_dssp             CCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred             cCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhcc
Confidence            7765 554444322     22234456899999999977      899999999754  47999999998653

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.7e-21  Score=180.80  Aligned_cols=132  Identities=20%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             ccccccCCcceEEEEEeCC----CCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeecc
Q 010856          366 NNLIGKGGFGSVYKARLGD----RMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFHH  440 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~~  440 (499)
                      .++||+|+||+||+|++..    ...||||+++... ....++|.+|++++++++|||||+++|++...+... ++++||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~-~lv~E~  110 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP-LVVLPY  110 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEE-EEEEEC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCce-EEEEEE
Confidence            4689999999999999643    2368999997543 344578999999999999999999999987655443 456677


Q ss_pred             cCCCcccc-cccc-----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          441 SSASASAS-LVSS-----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       441 ~~~~~~~~-l~~~-----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      +.++.... +...     +.....++.|+++||+|+|+      ++||.|+|+++++.++++|||+++.+
T Consensus       111 ~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~  180 (311)
T d1r0pa_         111 MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM  180 (311)
T ss_dssp             CTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCT
T ss_pred             eecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhc
Confidence            76554443 2211     12234557899999999876      99999999999999999999998754

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-21  Score=184.45  Aligned_cols=139  Identities=19%  Similarity=0.203  Sum_probs=106.9

Q ss_pred             HHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcCCCCCccccceeEEccc
Q 010856          358 RATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT  430 (499)
Q Consensus       358 ~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~  430 (499)
                      ...++|...+.||+|+||+||+|++.      +++.||||+++... ......|.+|++++++++|||||+++|++...+
T Consensus        17 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          17 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence            34578899999999999999999852      35789999997654 233456899999999999999999999987633


Q ss_pred             cceeeeeecccCCC-ccccccc--------------cccccccccccccccceeecc------CCCcccEEEeeCCCeEE
Q 010856          431 FTVCLCLFHHSSAS-ASASLVS--------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEV  489 (499)
Q Consensus       431 ~~~~~~l~~~~~~~-~~~~l~~--------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~  489 (499)
                        ..+++++++.++ +...+..              .+.....++.|+|+||+|||+      ++||.|+|++.++.+|+
T Consensus        97 --~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl  174 (308)
T d1p4oa_          97 --PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKI  174 (308)
T ss_dssp             --SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEE
T ss_pred             --ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEE
Confidence              345566766554 3333321              112234456899999999866      89999999999999999


Q ss_pred             EEEEEeecc
Q 010856          490 ICFVFEILL  498 (499)
Q Consensus       490 ~~f~~~~~~  498 (499)
                      +|||+++.+
T Consensus       175 ~DFGla~~~  183 (308)
T d1p4oa_         175 GDFGMTRDI  183 (308)
T ss_dssp             CCTTCCCGG
T ss_pred             eecccceec
Confidence            999998754

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.8e-21  Score=177.77  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=99.0

Q ss_pred             hhhcccccccccCCcceEEEEEeCC----CCEEEEEEeeccCC-ccHHHHHHHHHHHhcCCCCCccccceeEEcccccee
Q 010856          360 TDEFSENNLIGKGGFGSVYKARLGD----RMEVAVKVFNLQCG-RAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVC  434 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~  434 (499)
                      .++|++.+.||+|+||+||+|++..    +..||||.++.... ...+.|.+|++++++++|||||+++|++..  .. .
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~--~~-~   82 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--NP-V   82 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS--SS-C
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--Ce-E
Confidence            4679999999999999999998632    35688998865442 335679999999999999999999998854  22 3


Q ss_pred             eeeecccCCCcccc-ccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          435 LCLFHHSSASASAS-LVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~~~~~~-l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ++++|++.++.... +..     .+.....++.|+++||+|||+      ++||.||+++.++.+|++|||+++.+
T Consensus        83 ~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          83 WIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             EEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheec
Confidence            45667775554332 221     122244456899999999987      89999999999999999999998753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=4.5e-19  Score=157.52  Aligned_cols=182  Identities=20%  Similarity=0.303  Sum_probs=134.4

Q ss_pred             EEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCC
Q 010856           35 DFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNK  114 (499)
Q Consensus        35 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  114 (499)
                      ..++..+.+++.++.  ..+.+|++|++++|.++...  .+..+++|++|++++|++++..  .+..+++|++|++++|+
T Consensus        28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            345566666654432  34567788888888887433  3677888888888888887543  36778888888888888


Q ss_pred             CCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccc
Q 010856          115 LSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEI  194 (499)
Q Consensus       115 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (499)
                      +++. + .+..+++|+.|++++|.+..++ .+..++.++.+++++|.+++.  ..+..+++|+.+++++|++++..  .+
T Consensus       102 i~~l-~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l  174 (210)
T d1h6ta2         102 VKDL-S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PL  174 (210)
T ss_dssp             CCCG-G-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             cccc-c-cccccccccccccccccccccc-ccccccccccccccccccccc--ccccccccccccccccccccccc--cc
Confidence            8753 2 4777888888888888887765 567778888888888888753  35667888888888888887543  37


Q ss_pred             cCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCC
Q 010856          195 GGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSN  231 (499)
Q Consensus       195 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  231 (499)
                      .++++|++|++++|+++++ + .+..+++|++|+|++
T Consensus       175 ~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            7888888999988888754 3 588888898888763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=2.7e-20  Score=163.10  Aligned_cols=130  Identities=22%  Similarity=0.277  Sum_probs=87.6

Q ss_pred             CCEEECcCCCCCccCChhccccccccccEEEcccCCCcc-cCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEe
Q 010856            7 LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISG-GIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLG   85 (499)
Q Consensus         7 L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   85 (499)
                      .++++.++++++.++..     +|.++++|+|++|+|+. ..+..|.++++|++|+|++|.+....+..|..+++|++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~-----lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRD-----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcCccCCC-----CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            45677777777754322     34467777777777764 3455567777777777777777766666777777777777


Q ss_pred             cccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC
Q 010856           86 LEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS  141 (499)
Q Consensus        86 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  141 (499)
                      |++|+++.+.+..|.++++|++|+|++|+|+.+.+++|..+++|++|+|++|.+..
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            77777776666667777777777777777776666666666666666666666554

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-21  Score=182.91  Aligned_cols=137  Identities=17%  Similarity=0.185  Sum_probs=102.4

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-CC-----CEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-DR-----MEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVIT  430 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~  430 (499)
                      ..++|++.+.||+|+||+||+|+.. .+     ..||+|.+.... ......+.+|+++++++ +|||||++++++...+
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC
Confidence            3467999999999999999999852 22     369999986543 34457799999999998 8999999999997644


Q ss_pred             cceeeeeecccC-CCcccccccc---------------------------ccccccccccccccceeecc------CCCc
Q 010856          431 FTVCLCLFHHSS-ASASASLVSS---------------------------LTLSRPAKGGGFRGCVLWHV------GVDF  476 (499)
Q Consensus       431 ~~~~~~l~~~~~-~~~~~~l~~~---------------------------~~~~~~~~~~i~~gl~yLH~------~~~p  476 (499)
                        ..++++||+. |++.+.++..                           +.....++.||++||+|||+      |+||
T Consensus       115 --~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp  192 (325)
T d1rjba_         115 --PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAA  192 (325)
T ss_dssp             --SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSG
T ss_pred             --eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCch
Confidence              3445667665 4544443221                           11233456899999998765      8999


Q ss_pred             ccEEEeeCCCeEEEEEEEeec
Q 010856          477 AAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       477 ~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .|++++.++.+|++|||+++.
T Consensus       193 ~Nill~~~~~~Kl~DFGla~~  213 (325)
T d1rjba_         193 RNVLVTHGKVVKICDFGLARD  213 (325)
T ss_dssp             GGEEEETTTEEEECCCGGGSC
T ss_pred             hccccccCCeEEEeecccccc
Confidence            999999999999999999864

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.8e-21  Score=180.31  Aligned_cols=135  Identities=14%  Similarity=0.176  Sum_probs=107.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHHHHHHHh-cCCCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDVECEMMK-NIRHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~il~-~l~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|.+.+.||+|+||+||+|+. .+|+.||||++++..   ....+.+.+|+.++. .++|||||++++++...+  ..+
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~--~~y   79 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE--NLF   79 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--EEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCC--cee
Confidence            5799999999999999999996 479999999997643   344567788888765 689999999999988744  445


Q ss_pred             eeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          436 CLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      +++||+.| ++...+....    ...+.++.||+.||+|||+      ++||.|+++++++.++++|||++..
T Consensus        80 ivmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~  152 (320)
T d1xjda_          80 FVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKE  152 (320)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             EEEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhh
Confidence            67777755 4444443322    2344556899999999976      8999999999999999999999864

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-20  Score=177.28  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=108.6

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCL  437 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l  437 (499)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...  ....+++.+|+.+++.++|||||++++++...+  ...++
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~--~~~iv   79 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK--KLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--EEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccccc--ceeEE
Confidence            4689999999999999999996 579999999997654  334678999999999999999999999998744  44556


Q ss_pred             ecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          438 FHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       438 ~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++.|+....+..     .....+.++.|++.||+|||+      |+||.||+++.++.++++|||++..
T Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~  150 (292)
T d1unla_          80 FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARA  150 (292)
T ss_dssp             EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             eeeccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhc
Confidence            77776665443321     122344556899999999877      8999999999999999999999864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=7.3e-20  Score=160.35  Aligned_cols=176  Identities=21%  Similarity=0.233  Sum_probs=126.4

Q ss_pred             ccEEeeecCCCCCcCCccccCCccCCeeeccccCCCC-C-CccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEcc
Q 010856          105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS-V-PLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFS  182 (499)
Q Consensus       105 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  182 (499)
                      .++++.++++++. +|..+.  +++++|+|++|+|+. + +..|.++++|+.|++++|.+....+..|..+++|+.|+|+
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3567888888884 444443  578888888888875 3 3456778888888888888888778888888888888888


Q ss_pred             CCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccC
Q 010856          183 MNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEI  262 (499)
Q Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  262 (499)
                      +|+|+.+.+..|.++++|++|+|++|+|+.+.++.|..+++|++|+|++|.+....... .-...++.+.+..|.+++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCC
Confidence            88888877788888888888888888888777788888888888888888876432211 11123455566777777665


Q ss_pred             CCCCCCCCccccccCCCcCCCCCC
Q 010856          263 PRGGSFGNFSAESFEGNELLCGSP  286 (499)
Q Consensus       263 ~~~~~~~~l~~~~l~~N~~~c~~~  286 (499)
                      |..  +..+...++..|.+.|.++
T Consensus       166 p~~--l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         166 PSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             STT--TTTSBGGGSCTTTCCCCCC
T ss_pred             Chh--hcCCEeeecCHhhCcCCCC
Confidence            543  4455666777787777553

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-20  Score=178.59  Aligned_cols=136  Identities=18%  Similarity=0.172  Sum_probs=102.6

Q ss_pred             hhcccccccccCCcceEEEEEeC-CCC--EEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccccceee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLG-DRM--EVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVITFTVCL  435 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~-~~~--~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~~~~~~  435 (499)
                      ++|++.+.||+|+||+||+|+++ +|.  .||||+++... ....+.|.+|+++++++ +|||||+++|+|...+  ..+
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~--~~~   87 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--YLY   87 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT--EEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC--eeE
Confidence            57888999999999999999964 454  47788876543 34567899999999998 7999999999998633  445


Q ss_pred             eeecccCC-Cccccccc--------------------cccccccccccccccceeecc------CCCcccEEEeeCCCeE
Q 010856          436 CLFHHSSA-SASASLVS--------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVE  488 (499)
Q Consensus       436 ~l~~~~~~-~~~~~l~~--------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~  488 (499)
                      ++++|+.| ++.+.++.                    .+.....++.|||+||+|+|+      ++||.||++++++.+|
T Consensus        88 iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~k  167 (309)
T d1fvra_          88 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAK  167 (309)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEE
T ss_pred             EEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceE
Confidence            56776654 44443322                    112234456899999998876      8999999999999999


Q ss_pred             EEEEEEeecc
Q 010856          489 VICFVFEILL  498 (499)
Q Consensus       489 ~~~f~~~~~~  498 (499)
                      ++|||+++..
T Consensus       168 l~DfG~a~~~  177 (309)
T d1fvra_         168 IADFGLSRGQ  177 (309)
T ss_dssp             ECCTTCEESS
T ss_pred             Eccccccccc
Confidence            9999998753

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=1.4e-20  Score=181.25  Aligned_cols=137  Identities=14%  Similarity=0.075  Sum_probs=104.4

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC---CccHHHHHH---HHHHHhcCCCCCccccceeEEccccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC---GRAFESFDV---ECEMMKNIRHRNLIKILHGVAVITFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~---E~~il~~l~H~niv~l~~~~~~~~~~  432 (499)
                      .++|.+.+.||+|+||+||+|+. .+|+.||||++.+..   ......+.+   |+++++.++|||||++++++...+  
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~--   80 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--   80 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC--
Confidence            46799999999999999999996 479999999997543   122333444   467788899999999999987743  


Q ss_pred             eeeeeecccCC-Cccccccccc----cccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          433 VCLCLFHHSSA-SASASLVSSL----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       433 ~~~~l~~~~~~-~~~~~l~~~~----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      ..++++||+.| ++...+....    ...+.++.||+.||+|||+      |+||+|||++.++.++++|||+++.+
T Consensus        81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~  157 (364)
T d1omwa3          81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF  157 (364)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEEC
T ss_pred             EEEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeec
Confidence            34556777764 4444443322    2344456899999998877      89999999999999999999998753

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=1.3e-20  Score=175.26  Aligned_cols=137  Identities=17%  Similarity=0.172  Sum_probs=107.9

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCc---cHHHHHHHHHHHhcCCCCCccccceeEEcccc--cee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGR---AFESFDVECEMMKNIRHRNLIKILHGVAVITF--TVC  434 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~--~~~  434 (499)
                      ++|.+.+.||+|+||+||+|+. .+|+.||||++++....   ..+.+.+|++++++++|||||++++++...+.  ...
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            5699999999999999999995 57999999999765422   34578999999999999999999998876432  234


Q ss_pred             eeeecccCCCccc-ccccc----ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          435 LCLFHHSSASASA-SLVSS----LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       435 ~~l~~~~~~~~~~-~l~~~----~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++++||+.|+.+. .+...    +.....++.|++.||+|||+      |+||+||+++.++..+++|||+...
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~  160 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA  160 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEE
T ss_pred             EEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhh
Confidence            5677887665433 33222    22344556899999998877      8999999999999999999997653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8e-21  Score=178.83  Aligned_cols=144  Identities=16%  Similarity=0.117  Sum_probs=99.5

Q ss_pred             HHHHHHHhhhcccccccccCCcceEEEEEeC------CCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccce
Q 010856          353 YLELFRATDEFSENNLIGKGGFGSVYKARLG------DRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILH  424 (499)
Q Consensus       353 ~~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~  424 (499)
                      ...++...++|++.+.||+|+||+||+|+..      +++.||||+++... ....+.+.+|++++.++ +|+|||.+++
T Consensus         5 ~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~   84 (299)
T d1ywna1           5 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   84 (299)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeee
Confidence            3444444578999999999999999999842      35689999997544 23456788888888776 7899999998


Q ss_pred             eEEccccceeeeeecccC-CCcccccccc--------------------ccccccccccccccceeecc------CCCcc
Q 010856          425 GVAVITFTVCLCLFHHSS-ASASASLVSS--------------------LTLSRPAKGGGFRGCVLWHV------GVDFA  477 (499)
Q Consensus       425 ~~~~~~~~~~~~l~~~~~-~~~~~~l~~~--------------------~~~~~~~~~~i~~gl~yLH~------~~~p~  477 (499)
                      ++...+.. .++++||+. |++.+.+...                    +.....++.||++||+|||+      |+||.
T Consensus        85 ~~~~~~~~-~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~  163 (299)
T d1ywna1          85 ACTKPGGP-LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  163 (299)
T ss_dssp             EECSTTSC-CEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGG
T ss_pred             eeccCCCe-EEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcc
Confidence            87664433 345666665 4444333221                    12233446899999999865      99999


Q ss_pred             cEEEeeCCCeEEEEEEEeec
Q 010856          478 AFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       478 ~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ||++++++.+|++|||+++.
T Consensus       164 NILl~~~~~~Kl~DFGla~~  183 (299)
T d1ywna1         164 NILLSEKNVVKICDFGLARD  183 (299)
T ss_dssp             GEEECGGGCEEECC------
T ss_pred             ceeECCCCcEEEccCcchhh
Confidence            99999999999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.9e-17  Score=158.97  Aligned_cols=247  Identities=26%  Similarity=0.272  Sum_probs=152.3

Q ss_pred             CCCCEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeE
Q 010856            5 KSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGL   84 (499)
Q Consensus         5 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   84 (499)
                      .++++|||++|+++.. |+     .+++|++|++++|+|+ .+|+.   +.+|+.|++++|+++.+ +..   .+.|++|
T Consensus        38 ~~l~~LdLs~~~L~~l-p~-----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~l---p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLSSL-PE-----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCSCC-CS-----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEE
T ss_pred             cCCCEEEeCCCCCCCC-CC-----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hhh---ccccccc
Confidence            3689999999999854 43     2348999999999999 45654   45889999999998843 321   2469999


Q ss_pred             ecccccccccCCccccCcccccEEeeecCCCCCcCC------------------ccccCCccCCeeeccccCCCCCCc--
Q 010856           85 GLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP------------------ACFSNLTSLRIVSLGSNKLTSVPL--  144 (499)
Q Consensus        85 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~~--  144 (499)
                      ++++|.+... | .+..+++|+.|++++|.+.....                  ..+..++.++.+.+++|.+..++.  
T Consensus       104 ~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~  181 (353)
T d1jl5a_         104 GVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP  181 (353)
T ss_dssp             ECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred             cccccccccc-c-chhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccc
Confidence            9999999844 4 36788999999999998764322                  223445566666666665544321  


Q ss_pred             -----------------cccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcC
Q 010856          145 -----------------TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY  207 (499)
Q Consensus       145 -----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  207 (499)
                                       .+..++.|+.+++++|..... +   ....++..+.+.++.+.... .   ..+.+...++..
T Consensus       182 ~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~~-~---~~~~l~~~~~~~  253 (353)
T d1jl5a_         182 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSE  253 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccc-c---cccccccccccccccccccc-c---cccccccccccc
Confidence                             123345556666665554421 1   12233444444444443211 1   112222233222


Q ss_pred             CcCCC----------------CCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCEEEccCCcCcccCCCCCCCCCc
Q 010856          208 NRLQG----------------SIPDSFGDLISLKFLNLSNNNLSGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNF  271 (499)
Q Consensus       208 n~l~~----------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l  271 (499)
                      +.+.+                ........+++|++|++++|+|+. +|.   .+++|+.|++++|+|+. +|..  .+++
T Consensus       254 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~~-l~~~--~~~L  326 (353)
T d1jl5a_         254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAE-VPEL--PQNL  326 (353)
T ss_dssp             SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCC--CTTC
T ss_pred             ccccccccccchhcccccccCccccccccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCCc-cccc--cCCC
Confidence            22111                111122335788889998888884 343   35788888888888874 4543  4578


Q ss_pred             cccccCCCcCC
Q 010856          272 SAESFEGNELL  282 (499)
Q Consensus       272 ~~~~l~~N~~~  282 (499)
                      +.+++++|+..
T Consensus       327 ~~L~L~~N~L~  337 (353)
T d1jl5a_         327 KQLHVEYNPLR  337 (353)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECcCCcCC
Confidence            88888888843

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-20  Score=176.25  Aligned_cols=133  Identities=17%  Similarity=0.106  Sum_probs=100.1

Q ss_pred             hhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHH--HHHhcCCCCCccccceeEEcccc--ceeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVEC--EMMKNIRHRNLIKILHGVAVITF--TVCLC  436 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~--~il~~l~H~niv~l~~~~~~~~~--~~~~~  436 (499)
                      ++|.+.+.||+|+||+||+|++ +|+.||||+++...   .+.+.+|.  ..+..++|||||++++++...+.  ...++
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEE
Confidence            5688899999999999999997 68899999996532   33444444  45567899999999999876432  34556


Q ss_pred             eecccCCC-ccccccc---cccccccccccccccceee--------------ccCCCcccEEEeeCCCeEEEEEEEeec
Q 010856          437 LFHHSSAS-ASASLVS---SLTLSRPAKGGGFRGCVLW--------------HVGVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       437 l~~~~~~~-~~~~l~~---~~~~~~~~~~~i~~gl~yL--------------H~~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ++||+.++ +...+..   .+.....++.|+|.||+|+              |+|+||.|||+++++.+|++|||++..
T Consensus        79 v~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~  157 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcccc
Confidence            78887554 4444432   2223345568889988888              558999999999999999999998764

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-20  Score=180.46  Aligned_cols=133  Identities=16%  Similarity=0.164  Sum_probs=104.0

Q ss_pred             hcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEcc----ccceeee
Q 010856          362 EFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVI----TFTVCLC  436 (499)
Q Consensus       362 ~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~----~~~~~~~  436 (499)
                      +|+..++||+|+||+||+|+. .+|+.||||++.....    ...+|++++++++|||||++++++...    +....++
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            588889999999999999996 5799999999976542    234799999999999999999988542    2233456


Q ss_pred             eecccCCCcccccc--------ccccccccccccccccceeecc------CCCcccEEEeeCC-CeEEEEEEEeecc
Q 010856          437 LFHHSSASASASLV--------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEP-GVEVICFVFEILL  498 (499)
Q Consensus       437 l~~~~~~~~~~~l~--------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~-~~~~~~f~~~~~~  498 (499)
                      ++||+++++...+.        ..+...+.++.|++.||+|||+      |+||+|||++.++ .++++|||++...
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhc
Confidence            78888877544332        1222345567899999999987      8999999998765 7899999998643

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.5e-20  Score=180.78  Aligned_cols=138  Identities=14%  Similarity=0.106  Sum_probs=103.5

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEcccc----c
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVITF----T  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~----~  432 (499)
                      .+.|...+.||+|+||+||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|||||+++++|...+.    .
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            45799999999999999999996 579999999997543  2335678999999999999999999999876432    2


Q ss_pred             eeeeeecccCCCcccccc---ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLV---SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~---~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++|+++..+.....   ..+...+.++.|++.||+|||+      |+||.||+++.++.++++|||.++.
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~  170 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  170 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceec
Confidence            455678888554333221   2233345557899999999976      8999999999999999999999864

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-20  Score=177.15  Aligned_cols=138  Identities=16%  Similarity=0.154  Sum_probs=107.0

Q ss_pred             HhhhcccccccccCCcceEEEEEe------CCCCEEEEEEeeccC-CccHHHHHHHHHHHhcC-CCCCccccceeEEccc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL------GDRMEVAVKVFNLQC-GRAFESFDVECEMMKNI-RHRNLIKILHGVAVIT  430 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~il~~l-~H~niv~l~~~~~~~~  430 (499)
                      ..++|++.+.||+|+||.||+|++      .+++.||||+++... .....+|.+|+.+++++ +|||||+++|+|...+
T Consensus        21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            446899999999999999999984      246789999997654 33456799999999998 7999999999997643


Q ss_pred             cceeeeeecccCCCcc-ccccc----------------------cccccccccccccccceeecc------CCCcccEEE
Q 010856          431 FTVCLCLFHHSSASAS-ASLVS----------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF  481 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~-~~l~~----------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~  481 (499)
                        ..++++||+.++.. ..++.                      .+.....++.||++||+|||+      |+||+||++
T Consensus       101 --~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~  178 (311)
T d1t46a_         101 --PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILL  178 (311)
T ss_dssp             --SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred             --EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccccccc
Confidence              34556777755433 22221                      112333456899999999876      899999999


Q ss_pred             eeCCCeEEEEEEEeecc
Q 010856          482 VLEPGVEVICFVFEILL  498 (499)
Q Consensus       482 ~~~~~~~~~~f~~~~~~  498 (499)
                      +.++.++++|||.++..
T Consensus       179 ~~~~~~ki~DfG~~~~~  195 (311)
T d1t46a_         179 THGRITKICDFGLARDI  195 (311)
T ss_dssp             ETTTEEEECCCGGGSCT
T ss_pred             cccCcccccccchheec
Confidence            99999999999998753

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.1e-20  Score=177.29  Aligned_cols=138  Identities=17%  Similarity=0.168  Sum_probs=105.8

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEcc----ccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVI----TFT  432 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~----~~~  432 (499)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++++...  ...+++.+|++++++++|||||++++++...    +..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            46799999999999999999995 5799999999976542  3356789999999999999999999988542    223


Q ss_pred             eeeeeecccCCCccccccc---cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          433 VCLCLFHHSSASASASLVS---SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       433 ~~~~l~~~~~~~~~~~l~~---~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      ..++++++.+|++.+.+..   .+...+.++.|++.||+|||+      |+||.||+++.++.++++|||++..
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~  170 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH  170 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----C
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcc
Confidence            3555666666665444322   223344556899999999987      8999999999999999999999864

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.7e-20  Score=173.31  Aligned_cols=138  Identities=16%  Similarity=0.191  Sum_probs=105.9

Q ss_pred             hhhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccC--CccHHHHHHHHHHHhcCCCCCccccceeEEccc------
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILHGVAVIT------  430 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~------  430 (499)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++....  ....+++.+|++++++++||||+++++++....      
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            57899999999999999999996 579999999986543  334577899999999999999999999875521      


Q ss_pred             cceeeeeecccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FTVCLCLFHHSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .....++++++.++.......     .....+.++.|+++||+|||+      ++||.||+++.++.++++|||++..
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~  166 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARA  166 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeee
Confidence            123455777776665443221     222344556899999999877      8999999999999999999999864

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.7e-20  Score=175.82  Aligned_cols=137  Identities=16%  Similarity=0.106  Sum_probs=107.5

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC--ccHHHHHHHHHHHhcCCCCCccccceeEEccc----cce
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG--RAFESFDVECEMMKNIRHRNLIKILHGVAVIT----FTV  433 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~----~~~  433 (499)
                      .+|...++||+|+||+||+|+. .+|+.||||++.....  ...+++.+|+.++++++|||||++++++...+    ...
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            5699999999999999999996 4799999999976542  33457899999999999999999999986532    245


Q ss_pred             eeeeecccCCCcccccccc--ccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          434 CLCLFHHSSASASASLVSS--LTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       434 ~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                      .++++||+.+++...+...  ....+.++.|++.||+|||+      ++||.|++++.++.++++|||+.+.
T Consensus        97 ~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~  168 (355)
T d2b1pa1          97 VYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_dssp             EEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             eEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhc
Confidence            5678888888876654432  22344556899999999876      8999999999999999999998754

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-20  Score=173.33  Aligned_cols=136  Identities=18%  Similarity=0.233  Sum_probs=102.4

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCC------ccHHHHHHHHHHHhcCC--CCCccccceeEEcccc
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCG------RAFESFDVECEMMKNIR--HRNLIKILHGVAVITF  431 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~il~~l~--H~niv~l~~~~~~~~~  431 (499)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++++...      ....++.+|+.++++++  |||||++++++...+ 
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~-   82 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD-   82 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS-
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC-
Confidence            5699999999999999999996 5799999999976431      12244779999999886  999999999987744 


Q ss_pred             ceeeeeecccCC-Cc-cccccc----cccccccccccccccceeecc------CCCcccEEEeeC-CCeEEEEEEEeecc
Q 010856          432 TVCLCLFHHSSA-SA-SASLVS----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE-PGVEVICFVFEILL  498 (499)
Q Consensus       432 ~~~~~l~~~~~~-~~-~~~l~~----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~-~~~~~~~f~~~~~~  498 (499)
                       ..+.+++++.+ +. ...+..    .+...+.++.|+++||+|||+      |+||+||+++.+ +.++++|||+++..
T Consensus        83 -~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~  161 (273)
T d1xwsa_          83 -SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL  161 (273)
T ss_dssp             -EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             -eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceec
Confidence             33445555543 32 222222    223344556899999999877      899999999854 68999999998753

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.8e-20  Score=172.60  Aligned_cols=138  Identities=20%  Similarity=0.184  Sum_probs=100.5

Q ss_pred             HhhhcccccccccCCcceEEEEEeC-C-------CCEEEEEEeeccCC-ccHHHHHHHHHHHhcC-CCCCccccceeEEc
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARLG-D-------RMEVAVKVFNLQCG-RAFESFDVECEMMKNI-RHRNLIKILHGVAV  428 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~~-~-------~~~vavK~~~~~~~-~~~~~~~~E~~il~~l-~H~niv~l~~~~~~  428 (499)
                      ..++|.+.+.||+|+||.||+|+.. .       +..||||+++.... ....++.+|...+.++ +|||||+++++|..
T Consensus        11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            3467999999999999999999842 1       34799999976543 3457789999998887 89999999999976


Q ss_pred             cccceeeeeecccCCC-ccccccc--------------------cccccccccccccccceeecc------CCCcccEEE
Q 010856          429 ITFTVCLCLFHHSSAS-ASASLVS--------------------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVF  481 (499)
Q Consensus       429 ~~~~~~~~l~~~~~~~-~~~~l~~--------------------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~  481 (499)
                      .+  ..+.++||+.++ +.+.+..                    .+.....++.|++.||+|||+      |+||.|||+
T Consensus        91 ~~--~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl  168 (299)
T d1fgka_          91 DG--PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV  168 (299)
T ss_dssp             SS--SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred             CC--eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceee
Confidence            33  345567777554 4333321                    122234446899999999977      899999999


Q ss_pred             eeCCCeEEEEEEEeecc
Q 010856          482 VLEPGVEVICFVFEILL  498 (499)
Q Consensus       482 ~~~~~~~~~~f~~~~~~  498 (499)
                      +.++.++++|||+++..
T Consensus       169 ~~~~~~kl~dfg~~~~~  185 (299)
T d1fgka_         169 TEDNVMKIADFGLARDI  185 (299)
T ss_dssp             CTTCCEEECSTTCCCCG
T ss_pred             cCCCCeEeccchhhccc
Confidence            99999999999998753

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-19  Score=171.17  Aligned_cols=139  Identities=19%  Similarity=0.212  Sum_probs=104.9

Q ss_pred             HhhhcccccccccCCcceEEEEEe-CC-CCEEEEEEeeccC--CccHHHHHHHHHHHhcC---CCCCccccceeEEcc--
Q 010856          359 ATDEFSENNLIGKGGFGSVYKARL-GD-RMEVAVKVFNLQC--GRAFESFDVECEMMKNI---RHRNLIKILHGVAVI--  429 (499)
Q Consensus       359 ~~~~~~~~~~lg~G~~g~v~~~~~-~~-~~~vavK~~~~~~--~~~~~~~~~E~~il~~l---~H~niv~l~~~~~~~--  429 (499)
                      +.++|+..+.||+|+||+||+|+. ++ ++.||||+++...  ......+.+|+++++.+   +|||||+++++|...  
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            346899999999999999999996 44 6789999996543  22344577888877655   899999999998642  


Q ss_pred             -ccceeeeeecccCCCcccccc------ccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEee
Q 010856          430 -TFTVCLCLFHHSSASASASLV------SSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEI  496 (499)
Q Consensus       430 -~~~~~~~l~~~~~~~~~~~l~------~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~  496 (499)
                       .....++++|++.++......      ..+...+.++.|++.||+|||+      |+||+|||++.++.++++|||++.
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~  164 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  164 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             ccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhh
Confidence             223455677888776543221      1222344567899999999877      899999999999999999999976


Q ss_pred             c
Q 010856          497 L  497 (499)
Q Consensus       497 ~  497 (499)
                      .
T Consensus       165 ~  165 (305)
T d1blxa_         165 I  165 (305)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-19  Score=171.39  Aligned_cols=134  Identities=11%  Similarity=0.086  Sum_probs=101.7

Q ss_pred             hhhcccc-cccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhc-CCCCCccccceeEEcc--cccee
Q 010856          360 TDEFSEN-NLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKN-IRHRNLIKILHGVAVI--TFTVC  434 (499)
Q Consensus       360 ~~~~~~~-~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~-l~H~niv~l~~~~~~~--~~~~~  434 (499)
                      .++|.+. ++||+|+||+||+|+. .+++.||||+++.     .+.+.+|++++.+ .+|||||+++++|...  .....
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~   84 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   84 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence            4678876 4699999999999996 5799999999964     3567899998765 5899999999988642  22345


Q ss_pred             eeeecccCC-Cccccccc------cccccccccccccccceeecc------CCCcccEEEeeC---CCeEEEEEEEeecc
Q 010856          435 LCLFHHSSA-SASASLVS------SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLE---PGVEVICFVFEILL  498 (499)
Q Consensus       435 ~~l~~~~~~-~~~~~l~~------~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~---~~~~~~~f~~~~~~  498 (499)
                      ++++||+.| ++.+.+..      .+...+.++.|++.||+|||+      |+||+||+++++   +.++++|||+++..
T Consensus        85 ~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~  164 (335)
T d2ozaa1          85 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET  164 (335)
T ss_dssp             EEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeec
Confidence            567777754 55554432      222345556899999999876      899999999863   45999999998753

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.5e-19  Score=169.65  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=104.5

Q ss_pred             hhhcccccccccCCcceEEEEEe----CCCCEEEEEEeeccC----CccHHHHHHHHHHHhcCCC-CCccccceeEEccc
Q 010856          360 TDEFSENNLIGKGGFGSVYKARL----GDRMEVAVKVFNLQC----GRAFESFDVECEMMKNIRH-RNLIKILHGVAVIT  430 (499)
Q Consensus       360 ~~~~~~~~~lg~G~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~il~~l~H-~niv~l~~~~~~~~  430 (499)
                      .++|+..+.||+|+||+||+|+.    .+|+.||||++++..    ....+.+.+|++++++++| |||+++++++...+
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~  102 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  102 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC
Confidence            36799999999999999999984    258899999986542    2335678899999999977 89999998887643


Q ss_pred             cceeeeeecccCC-Ccccccccccc----ccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeec
Q 010856          431 FTVCLCLFHHSSA-SASASLVSSLT----LSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEIL  497 (499)
Q Consensus       431 ~~~~~~l~~~~~~-~~~~~l~~~~~----~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~  497 (499)
                        ..+.++|++.| ++...+.....    ....++.|++.|++|+|+      ++||.|++++.++.++++|||+++.
T Consensus       103 --~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         103 --KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             --EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             --ceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhh
Confidence              33445666654 44444332222    233345899999999877      8999999999999999999999864

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=9.9e-19  Score=164.37  Aligned_cols=135  Identities=17%  Similarity=0.142  Sum_probs=103.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCCccccceeEEccccceeeeeec
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAVITFTVCLCLFH  439 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~niv~l~~~~~~~~~~~~~~l~~  439 (499)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++.....  .+++.+|+++++.++|+|+|..++++...+ ...++++|
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~-~~~~ivme   83 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEG-DYNVMVME   83 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEET-TEEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecC-CEEEEEEE
Confidence            3599999999999999999996 5799999999876432  245889999999999888887776665433 34556788


Q ss_pred             ccCCCccccccc-----cccccccccccccccceeecc------CCCcccEEEee---CCCeEEEEEEEeecc
Q 010856          440 HSSASASASLVS-----SLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL---EPGVEVICFVFEILL  498 (499)
Q Consensus       440 ~~~~~~~~~l~~-----~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~---~~~~~~~~f~~~~~~  498 (499)
                      ++++++...+..     .......++.|++.||+|||+      |+||.||++..   +..++++|||+++.+
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~  156 (299)
T d1ckia_          84 LLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY  156 (299)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEEC
T ss_pred             EcCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceec
Confidence            888776554332     223344556899999998866      89999999864   346999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=2.6e-15  Score=143.85  Aligned_cols=225  Identities=27%  Similarity=0.285  Sum_probs=138.0

Q ss_pred             cccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeee
Q 010856           32 SLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLD  111 (499)
Q Consensus        32 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  111 (499)
                      ++++|+|++|.++. +|+.   +++|++|++++|+|+ .+|..   +.+|+.|++++|+++.. ++ +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh-h--cccccccccc
Confidence            79999999999985 5643   578999999999999 45654   46899999999998843 32 1  2469999999


Q ss_pred             cCCCCCcCCccccCCccCCeeeccccCCCCCCcc-------------------ccCCCCCcEEEcCCCcCCCCCc-----
Q 010856          112 GNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-------------------FWNLKDILNLNFSSNFLTSPLP-----  167 (499)
Q Consensus       112 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~~-----  167 (499)
                      +|.+... |. +..+++|+.|++++|.+...+..                   +..++.++.+++.+|.......     
T Consensus       107 ~n~l~~l-p~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         107 NNQLEKL-PE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             SSCCSSC-CC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             ccccccc-cc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccc
Confidence            9999954 43 67899999999999988765432                   2234445555555554432110     


Q ss_pred             -------------ccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 010856          168 -------------LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLNLSNNNL  234 (499)
Q Consensus       168 -------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l  234 (499)
                                   ..+..++.|+.+++++|..... +   ....++..+.+.++.+... +   ...+.+...++..+.+
T Consensus       185 ~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         185 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIF  256 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccc-c---ccccccccccccccccccc-c---cccccccccccccccc
Confidence                         1112233344444444433211 1   1122333444444433311 1   1122344444443332


Q ss_pred             Ccc----------------CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccccccCCCcC
Q 010856          235 SGA----------------IPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL  281 (499)
Q Consensus       235 ~~~----------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~l~~N~~  281 (499)
                      .+.                .......+++|++|++++|+++. +|.  .+++++.+++.+|..
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~--~~~~L~~L~L~~N~L  316 (353)
T d1jl5a_         257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA--LPPRLERLIASFNHL  316 (353)
T ss_dssp             SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC
T ss_pred             cccccccchhcccccccCccccccccCCCCCEEECCCCccCc-ccc--ccCCCCEEECCCCcC
Confidence            211                01112335799999999999984 554  368899999998864

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=2.3e-18  Score=161.07  Aligned_cols=134  Identities=13%  Similarity=0.037  Sum_probs=103.0

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCC-CCccccceeEEccccceeeeee
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRH-RNLIKILHGVAVITFTVCLCLF  438 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H-~niv~l~~~~~~~~~~~~~~l~  438 (499)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++....  ..+.+.+|+++++.++| +|++.+++++..  ....++++
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~--~~~~~~vm   80 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE--GLHNVLVI   80 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE--TTEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeec--CCccEEEE
Confidence            4699999999999999999996 479999999986543  23457789999999865 899999888765  33456678


Q ss_pred             cccCCCccccccccc-----cccccccccccccceeecc------CCCcccEEEee-----CCCeEEEEEEEeecc
Q 010856          439 HHSSASASASLVSSL-----TLSRPAKGGGFRGCVLWHV------GVDFAAFVFVL-----EPGVEVICFVFEILL  498 (499)
Q Consensus       439 ~~~~~~~~~~l~~~~-----~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~-----~~~~~~~~f~~~~~~  498 (499)
                      |++++++...+....     .....++.|++.||+|||+      |+||.||++..     ++.++++|||+++.+
T Consensus        81 e~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~  156 (293)
T d1csna_          81 DLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY  156 (293)
T ss_dssp             ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred             EecCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEc
Confidence            888877655543222     2233446888899988776      89999999964     467999999998753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.8e-19  Score=176.04  Aligned_cols=110  Identities=20%  Similarity=0.231  Sum_probs=69.5

Q ss_pred             CCCEEECcCCCCCccCChhccccccccccEEEcccCCCcc----cCCccccCCCCCCEEeccCCcCCccC----Ccccc-
Q 010856            6 SLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISG----GIPEEISNLTNSTIVNLGGNKLNGSI----PITLS-   76 (499)
Q Consensus         6 ~L~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-   76 (499)
                      +|++||+++|++++..-...+..++ ++++|+|++|+++.    .++.++..+++|++|+|++|.|+...    ...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~-~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5777888888887543222344455 77888888887763    23445667777888888887775321    12222 


Q ss_pred             CCCCCCeEeccccccccc----CCccccCcccccEEeeecCCCC
Q 010856           77 KLQKLQGLGLEDNKLEGS----IPDDICHLAELYRLDLDGNKLS  116 (499)
Q Consensus        77 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  116 (499)
                      ...+|++|+|++|+++..    ++..+..+++|++|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            234678888888777643    2345666777888888777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-17  Score=155.35  Aligned_cols=221  Identities=22%  Similarity=0.204  Sum_probs=122.8

Q ss_pred             CEEECcCCCCCccCChhccccccccccEEEcccCCCcccCCccccCCCCCCEEeccCCcCCcc-CCccccCCCCCCeEec
Q 010856            8 TLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGS-IPITLSKLQKLQGLGL   86 (499)
Q Consensus         8 ~~L~L~~n~l~~~~~~~~~~~l~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L   86 (499)
                      ++|||+++.+...... .+  +...+..+.+..+.+..... ......+|++||++++.++.. ....+.++++|++|+|
T Consensus         3 ~~lDLs~~~l~~~~l~-~l--~~~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTG-RL--LSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHH-HH--HHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHH-HH--HhccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            4788888877532211 11  11235566666655543222 233456788888888877643 2344677788888888


Q ss_pred             ccccccccCCccccCcccccEEeeecC-CCCCcC-CccccCCccCCeeecccc-CCCC--CCcccc-CCCCCcEEEcCCC
Q 010856           87 EDNKLEGSIPDDICHLAELYRLDLDGN-KLSGSL-PACFSNLTSLRIVSLGSN-KLTS--VPLTFW-NLKDILNLNFSSN  160 (499)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~-~l~~L~~L~l~~n  160 (499)
                      ++|.+++..+..+..+++|++|+++++ .++... ...+.++++|++|++++| .+++  +...+. ..++|+.|+++++
T Consensus        79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            888777666666777778888888774 444211 112345677777777775 3432  222222 2356777776654


Q ss_pred             --cCCCC-CcccccCCCCccEEEccCC-cccccCcccccCCcCCceeeCcCC-cCCCCCCccccCCCCCCEEeCCCC
Q 010856          161 --FLTSP-LPLEIGNLKVLIGIDFSMN-NFSGVIPTEIGGLKNLEYLFLGYN-RLQGSIPDSFGDLISLKFLNLSNN  232 (499)
Q Consensus       161 --~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~N  232 (499)
                        .+++. ......++++|+.|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              23221 1112234556666666654 344444455555566666666653 354444444555566666666555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-16  Score=135.20  Aligned_cols=127  Identities=20%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             cCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCcee
Q 010856          124 SNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL  203 (499)
Q Consensus       124 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  203 (499)
                      .+..+|++|+|++|+|+.++..+..+++|+.|++++|.|+.+  ..+..+++|++|++++|+++...+..+..+++|++|
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            344455555555555555554444455555555555555543  234555666666666666655544445556666666


Q ss_pred             eCcCCcCCCCCC-ccccCCCCCCEEeCCCCcCCccC---cccccCCCCCCEEE
Q 010856          204 FLGYNRLQGSIP-DSFGDLISLKFLNLSNNNLSGAI---PASLEKLSYLENLN  252 (499)
Q Consensus       204 ~L~~n~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~  252 (499)
                      ++++|+++.... ..+..+++|+.|++++|+++...   +..+..+|+|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666654321 34566666666666666665332   12455666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=1.5e-17  Score=159.53  Aligned_cols=234  Identities=21%  Similarity=0.201  Sum_probs=159.6

Q ss_pred             cccccccccEEEcccCCCccc----CCccccCCCCCCEEeccCCcCCccC----------CccccCCCCCCeEecccccc
Q 010856           26 VGNLSHSLEDFRMYNCNISGG----IPEEISNLTNSTIVNLGGNKLNGSI----------PITLSKLQKLQGLGLEDNKL   91 (499)
Q Consensus        26 ~~~l~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~L~~n~l   91 (499)
                      +.... +|++|+|++|.+...    +...+...++|+.|+++++......          ...+..+++|++|+|++|.+
T Consensus        27 L~~~~-~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          27 LLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HhhCC-CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            44444 788888888887643    2334667788888888877654221          12245678899999998888


Q ss_pred             cccC----CccccCcccccEEeeecCCCCCcCCc-------------cccCCccCCeeeccccCCCC-----CCccccCC
Q 010856           92 EGSI----PDDICHLAELYRLDLDGNKLSGSLPA-------------CFSNLTSLRIVSLGSNKLTS-----VPLTFWNL  149 (499)
Q Consensus        92 ~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l  149 (499)
                      +...    ...+...++|+.|++++|.+......             .....+.|+.+.+++|+++.     +...+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            6542    23345678889999988887521111             11345678889999888874     23345567


Q ss_pred             CCCcEEEcCCCcCCCC-----CcccccCCCCccEEEccCCccccc----CcccccCCcCCceeeCcCCcCCCCCCcc---
Q 010856          150 KDILNLNFSSNFLTSP-----LPLEIGNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGSIPDS---  217 (499)
Q Consensus       150 ~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~---  217 (499)
                      +.|++|++++|.++..     ....+..+++|+.|++++|.++..    ....+..+++|++|++++|.|++.....   
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            8899999999988642     233466778899999999987643    2345677888999999999887542222   


Q ss_pred             -cc--CCCCCCEEeCCCCcCCccC----ccccc-CCCCCCEEEccCCcCcc
Q 010856          218 -FG--DLISLKFLNLSNNNLSGAI----PASLE-KLSYLENLNLSFNKLEG  260 (499)
Q Consensus       218 -l~--~l~~L~~L~l~~N~l~~~~----~~~~~-~l~~L~~L~l~~N~l~~  260 (499)
                       +.  ..+.|+.|++++|+|+...    ...+. ++++|+.|++++|++..
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence             22  2467899999999887432    23332 56789999999998863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=133.47  Aligned_cols=110  Identities=17%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             ccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCcc-ccCCCCCc
Q 010856           75 LSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLT-FWNLKDIL  153 (499)
Q Consensus        75 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~  153 (499)
                      |.++.+|++|+|++|+|+.+ +..+..+++|+.|+|++|+++..  +.|..+++|+.|++++|+++.++.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            44555666666666666633 44445566666666666666643  2355566666666666666655443 23455555


Q ss_pred             EEEcCCCcCCCCCc-ccccCCCCccEEEccCCccc
Q 010856          154 NLNFSSNFLTSPLP-LEIGNLKVLIGIDFSMNNFS  187 (499)
Q Consensus       154 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~  187 (499)
                      +|++++|++++... ..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            55555555543211 23334444444444444443

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.62  E-value=9.8e-17  Score=139.95  Aligned_cols=126  Identities=13%  Similarity=0.082  Sum_probs=93.1

Q ss_pred             ccccccccCCcceEEEEEeCCCCEEEEEEeeccCC------------------ccHHHHHHHHHHHhcCCCCCcccccee
Q 010856          364 SENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCG------------------RAFESFDVECEMMKNIRHRNLIKILHG  425 (499)
Q Consensus       364 ~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~il~~l~H~niv~l~~~  425 (499)
                      .+.+.||+|+||+||+|+..+|+.||||+++....                  .......+|.+.+.++.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            46789999999999999988899999998753210                  002335678899999999999987654


Q ss_pred             EEccccceeeeeecccCCCccccccccccccccccccccccceeecc------CCCcccEEEeeCCCeEEEEEEEeecc
Q 010856          426 VAVITFTVCLCLFHHSSASASASLVSSLTLSRPAKGGGFRGCVLWHV------GVDFAAFVFVLEPGVEVICFVFEILL  498 (499)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~i~~gl~yLH~------~~~p~~~l~~~~~~~~~~~f~~~~~~  498 (499)
                      .      ...++++++.+.....+  .......++.|+++|++|||+      |+||.||+++ ++++++||||.++..
T Consensus        83 ~------~~~lvme~~~~~~~~~l--~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~-~~~~~liDFG~a~~~  152 (191)
T d1zara2          83 E------GNAVLMELIDAKELYRV--RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEV  152 (191)
T ss_dssp             E------TTEEEEECCCCEEGGGC--CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEET
T ss_pred             c------CCEEEEEeeccccccch--hhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeee-CCCEEEEECCCcccC
Confidence            2      12457788877654433  223344566888888888766      8999999996 578999999988754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=1.9e-17  Score=158.87  Aligned_cols=233  Identities=18%  Similarity=0.166  Sum_probs=170.0

Q ss_pred             CCCCCCEEECcCCCCCccCCh---hccccccccccEEEcccCCCccc----------CCccccCCCCCCEEeccCCcCCc
Q 010856            3 NCKSLTLIYLSNNPLDGILPK---TSVGNLSHSLEDFRMYNCNISGG----------IPEEISNLTNSTIVNLGGNKLNG   69 (499)
Q Consensus         3 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~~L~~L~l~~n~i~~~----------~~~~~~~l~~L~~L~L~~n~l~~   69 (499)
                      +++.|++|+|++|.+......   ..+...+ +|+.|+++++.....          +..++..+++|++|+|++|.++.
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCC-CCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            467899999999998654222   1344455 899999998765421          22345678999999999999875


Q ss_pred             cCC----ccccCCCCCCeEecccccccccCCcc-------------ccCcccccEEeeecCCCCCcC----CccccCCcc
Q 010856           70 SIP----ITLSKLQKLQGLGLEDNKLEGSIPDD-------------ICHLAELYRLDLDGNKLSGSL----PACFSNLTS  128 (499)
Q Consensus        70 ~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~  128 (499)
                      ...    ..+...++|++|++++|.+.......             ....+.|+.+++++|.++...    ...+...+.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            432    23456789999999999875321111             134678999999999987432    233456789


Q ss_pred             CCeeeccccCCCC------CCccccCCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCcccccCcccc----
Q 010856          129 LRIVSLGSNKLTS------VPLTFWNLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGVIPTEI----  194 (499)
Q Consensus       129 L~~L~L~~n~l~~------~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----  194 (499)
                      |+.|++++|+++.      +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.|++.....+    
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  267 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHh
Confidence            9999999999875      234567789999999999998642    23456788999999999999986533333    


Q ss_pred             c--CCcCCceeeCcCCcCCCCC----Cccc-cCCCCCCEEeCCCCcCCc
Q 010856          195 G--GLKNLEYLFLGYNRLQGSI----PDSF-GDLISLKFLNLSNNNLSG  236 (499)
Q Consensus       195 ~--~l~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~l~~N~l~~  236 (499)
                      .  ..+.|++|++++|+|+...    ...+ .++++|+.|++++|++..
T Consensus       268 ~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            2  2467999999999987532    2233 257899999999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3e-15  Score=120.01  Aligned_cols=100  Identities=30%  Similarity=0.349  Sum_probs=40.6

Q ss_pred             eeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCC
Q 010856          132 VSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ  211 (499)
Q Consensus       132 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  211 (499)
                      |++++|+++.++ .+..+++|++|++++|++++ +|..+..+++|+.|++++|.|++.  ..+..+++|++|++++|+++
T Consensus         3 L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           3 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCC
T ss_pred             EEcCCCCCCCCc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc--CccccccccCeEECCCCccC
Confidence            344444444333 13333444444444444432 222333344444444444444322  12444444444444444444


Q ss_pred             CCC-CccccCCCCCCEEeCCCCcCC
Q 010856          212 GSI-PDSFGDLISLKFLNLSNNNLS  235 (499)
Q Consensus       212 ~~~-~~~l~~l~~L~~L~l~~N~l~  235 (499)
                      +.. ...+..+++|+.|++++|+++
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC
Confidence            322 133444445555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.3e-15  Score=120.65  Aligned_cols=87  Identities=22%  Similarity=0.195  Sum_probs=41.2

Q ss_pred             ccCCccCCeeeccccCCCCCCccccCCCCCcEEEcCCCcCCCCCcccccCCCCccEEEccCCcccccC-cccccCCcCCc
Q 010856          123 FSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVI-PTEIGGLKNLE  201 (499)
Q Consensus       123 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~  201 (499)
                      +..+++|++|++++|+++++|..+..+++|+.|++++|.+++. + .+..+++|+.|++++|+++... ...+..+++|+
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            3444444444444444444444444444444444444444432 1 2444455555555555554332 13345555555


Q ss_pred             eeeCcCCcCC
Q 010856          202 YLFLGYNRLQ  211 (499)
Q Consensus       202 ~L~L~~n~l~  211 (499)
                      .|++++|+++
T Consensus        94 ~L~l~~N~i~  103 (124)
T d1dcea3          94 LLNLQGNSLC  103 (124)
T ss_dssp             EEECTTSGGG
T ss_pred             EEECCCCcCC
Confidence            5555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-16  Score=146.57  Aligned_cols=221  Identities=15%  Similarity=0.159  Sum_probs=160.8

Q ss_pred             cEEEcccCCCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEeccccccccc-CCccccCcccccEEeeec
Q 010856           34 EDFRMYNCNISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGS-IPDDICHLAELYRLDLDG  112 (499)
Q Consensus        34 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~  112 (499)
                      ++||++++.+.......+.. ..+..+.++...+.... .......+|++||+++|.++.. ....+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46889888775322222211 23456666666655322 2234557899999999988644 344578899999999999


Q ss_pred             CCCCCcCCccccCCccCCeeecccc-CCCC--CCccccCCCCCcEEEcCCC-cCCCC-Cccccc-CCCCccEEEccCCc-
Q 010856          113 NKLSGSLPACFSNLTSLRIVSLGSN-KLTS--VPLTFWNLKDILNLNFSSN-FLTSP-LPLEIG-NLKVLIGIDFSMNN-  185 (499)
Q Consensus       113 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~-~l~~L~~L~l~~n~-  185 (499)
                      |.+++.....+..+++|+.|++++| .+++  +......+++|++|+++++ .+++. ....+. ..+.|+.|+++++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            9998777778888999999999996 5664  3334567899999999996 44431 112222 34789999999763 


Q ss_pred             -cccc-CcccccCCcCCceeeCcCC-cCCCCCCccccCCCCCCEEeCCCC-cCCccCcccccCCCCCCEEEccCC
Q 010856          186 -FSGV-IPTEIGGLKNLEYLFLGYN-RLQGSIPDSFGDLISLKFLNLSNN-NLSGAIPASLEKLSYLENLNLSFN  256 (499)
Q Consensus       186 -l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  256 (499)
                       ++.. ....+..+++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             4432 2223357899999999986 477777788899999999999995 688777778889999999999987

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-16  Score=158.70  Aligned_cols=159  Identities=16%  Similarity=0.025  Sum_probs=112.6

Q ss_pred             cCCccCCeeeccccCCCCC-----CccccCCCCCcEEEcCCCcCCCCCccc-----ccCCCCccEEEccCCcccccCccc
Q 010856          124 SNLTSLRIVSLGSNKLTSV-----PLTFWNLKDILNLNFSSNFLTSPLPLE-----IGNLKVLIGIDFSMNNFSGVIPTE  193 (499)
Q Consensus       124 ~~l~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~  193 (499)
                      .....++.+++++|.+...     ...+...+.++.+++++|.+++.....     ......|+.+++++|.++......
T Consensus       252 ~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~  331 (460)
T d1z7xw1         252 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh
Confidence            3456899999999998752     234566889999999999986422211     123468999999999987654333


Q ss_pred             c----cCCcCCceeeCcCCcCCCCC----Cccc-cCCCCCCEEeCCCCcCCcc----CcccccCCCCCCEEEccCCcCcc
Q 010856          194 I----GGLKNLEYLFLGYNRLQGSI----PDSF-GDLISLKFLNLSNNNLSGA----IPASLEKLSYLENLNLSFNKLEG  260 (499)
Q Consensus       194 l----~~l~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~  260 (499)
                      +    ...++|++|+|++|++++..    +..+ ...+.|+.|+|++|+|+..    ++..+..+++|++|+|++|+++.
T Consensus       332 l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            3    45678999999999987532    2233 2467899999999999853    34556778999999999999974


Q ss_pred             cCCCC------CCCCCccccccCCCcCC
Q 010856          261 EIPRG------GSFGNFSAESFEGNELL  282 (499)
Q Consensus       261 ~~~~~------~~~~~l~~~~l~~N~~~  282 (499)
                      .....      .....++.+.+.+|.+.
T Consensus       412 ~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         412 AGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            21110      11235778888887754

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=8.3e-16  Score=148.29  Aligned_cols=137  Identities=12%  Similarity=0.118  Sum_probs=95.2

Q ss_pred             hhcccccccccCCcceEEEEEe-CCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-----------CCCccccceeEEc
Q 010856          361 DEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-----------HRNLIKILHGVAV  428 (499)
Q Consensus       361 ~~~~~~~~lg~G~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-----------H~niv~l~~~~~~  428 (499)
                      ++|++.++||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+++++.++           |+|||++++++..
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            3499999999999999999996 579999999997543 23467889999988775           5788999888754


Q ss_pred             ccc-ceeeeeecccCCCc-cccc------cccccccccccccccccceeecc-------CCCcccEEEeeCCC------e
Q 010856          429 ITF-TVCLCLFHHSSASA-SASL------VSSLTLSRPAKGGGFRGCVLWHV-------GVDFAAFVFVLEPG------V  487 (499)
Q Consensus       429 ~~~-~~~~~l~~~~~~~~-~~~l------~~~~~~~~~~~~~i~~gl~yLH~-------~~~p~~~l~~~~~~------~  487 (499)
                      ... ....++..+..++. ....      .......+.++.|+++||+|||+       |+||+||+++.++.      +
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccccccee
Confidence            222 22222222222221 1111      11222344556899999988875       78999999986654      9


Q ss_pred             EEEEEEEeecc
Q 010856          488 EVICFVFEILL  498 (499)
Q Consensus       488 ~~~~f~~~~~~  498 (499)
                      +++|||.+...
T Consensus       172 kl~dfg~s~~~  182 (362)
T d1q8ya_         172 KIADLGNACWY  182 (362)
T ss_dssp             EECCCTTCEET
T ss_pred             eEeeccccccc
Confidence            99999988653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.9e-14  Score=116.17  Aligned_cols=108  Identities=22%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             CCCcEEEcCCCcCCCCCcccccCCCCccEEEccCC-cccccCcccccCCcCCceeeCcCCcCCCCCCccccCCCCCCEEe
Q 010856          150 KDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMN-NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLISLKFLN  228 (499)
Q Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  228 (499)
                      ...+.++.+++.+.. .|..+..+++|+.|++++| .++.+.+..|.++++|+.|+|++|+|+.+.+..|..+++|+.|+
T Consensus         8 ~~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            344556666666653 3445566666666666544 36655556666666666666666666666566666666666666


Q ss_pred             CCCCcCCccCcccccCCCCCCEEEccCCcCc
Q 010856          229 LSNNNLSGAIPASLEKLSYLENLNLSFNKLE  259 (499)
Q Consensus       229 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  259 (499)
                      |++|+|+...+..|..+ +|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCccc
Confidence            66666665444444433 4666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=2.9e-16  Score=137.29  Aligned_cols=86  Identities=23%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             cccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeeccccCCCCCCccccCCCCCc
Q 010856           74 TLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDIL  153 (499)
Q Consensus        74 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~  153 (499)
                      .+..+++|++|+|++|+|+.+  +.+..+++|++|++++|+++. ++..+..+++|+.|++++|+++.++ .+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred             HHhcccccceeECcccCCCCc--ccccCCccccChhhccccccc-ccccccccccccccccccccccccc-ccccccccc
Confidence            344444455555555544422  124444444444444444442 2222222334444444444444432 233334444


Q ss_pred             EEEcCCCcCC
Q 010856          154 NLNFSSNFLT  163 (499)
Q Consensus       154 ~L~l~~n~l~  163 (499)
                      .|++++|+++
T Consensus       119 ~L~L~~N~i~  128 (198)
T d1m9la_         119 VLYMSNNKIT  128 (198)
T ss_dssp             EEEESEEECC
T ss_pred             ccccccchhc
Confidence            4444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=5.3e-16  Score=135.60  Aligned_cols=126  Identities=21%  Similarity=0.246  Sum_probs=86.7

Q ss_pred             cccEEEcccC--CCcccCCccccCCCCCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEe
Q 010856           32 SLEDFRMYNC--NISGGIPEEISNLTNSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLD  109 (499)
Q Consensus        32 ~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  109 (499)
                      .++.+++.+.  .+. ..+.++..+++|++|+|++|+|+.+ + .+.++++|+.|+|++|.++. ++..+..+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-ccccccccccccccc
Confidence            4555666543  233 3456677788888888888888744 3 47778888888888888773 344445566788888


Q ss_pred             eecCCCCCcCCccccCCccCCeeeccccCCCCCCc--cccCCCCCcEEEcCCCcCC
Q 010856          110 LDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL--TFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus       110 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~  163 (499)
                      +++|+++..  ..+..+++|+.|++++|++++++.  .+..+++|+.|++++|.+.
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            888888753  346677888888888888877653  4666677777777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=115.12  Aligned_cols=106  Identities=22%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             CCEEeccCCcCCccCCccccCCCCCCeEecccc-cccccCCccccCcccccEEeeecCCCCCcCCccccCCccCCeeecc
Q 010856           57 STIVNLGGNKLNGSIPITLSKLQKLQGLGLEDN-KLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLG  135 (499)
Q Consensus        57 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  135 (499)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+.+.+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555554 23444555556666666544 3555555556666666666666666665555666666666666666


Q ss_pred             ccCCCCCCccccCCCCCcEEEcCCCcCC
Q 010856          136 SNKLTSVPLTFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus       136 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~  163 (499)
                      +|+++.+|.......+|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            6666665554444445566666666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.8e-10  Score=94.35  Aligned_cols=64  Identities=25%  Similarity=0.178  Sum_probs=24.9

Q ss_pred             CCCCCcEEEcCCCcCCCCC--cccccCCCCccEEEccCCcccccCcccccCCcCCceeeCcCCcCC
Q 010856          148 NLKDILNLNFSSNFLTSPL--PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ  211 (499)
Q Consensus       148 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  211 (499)
                      .+++|++|+|++|+|+.+.  +..+..+++|+.|++++|.|+...+-.+....+|+.|++++|++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444444444444444321  122233344444444444443322212222233444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.3e-10  Score=92.95  Aligned_cols=103  Identities=18%  Similarity=0.142  Sum_probs=49.5

Q ss_pred             CCCEEeccCCcCCccCCccccCCCCCCeEecccccccccCCccccCcccccEEeeecCCCCCcC--CccccCCccCCeee
Q 010856           56 NSTIVNLGGNKLNGSIPITLSKLQKLQGLGLEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSL--PACFSNLTSLRIVS  133 (499)
Q Consensus        56 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~  133 (499)
                      ..+.|+++++...    ..+..+..+..++..++... .++..+..+++|++|+|++|+|+...  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3455666554422    12333344444444444332 22333445666666666666666432  22344556666666


Q ss_pred             ccccCCCCCCc-cccCCCCCcEEEcCCCcCC
Q 010856          134 LGSNKLTSVPL-TFWNLKDILNLNFSSNFLT  163 (499)
Q Consensus       134 L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~  163 (499)
                      +++|+|++++. .......|+.|++++|.+.
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcC
Confidence            66666665443 1222334455555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=8e-07  Score=73.91  Aligned_cols=88  Identities=18%  Similarity=0.054  Sum_probs=48.9

Q ss_pred             ccCCCCccEEEccCCcccccC----cccccCCcCCceeeCcCCcCCCC----CCccccCCCCCCEEeCCCCcCCcc----
Q 010856          170 IGNLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNLSNNNLSGA----  237 (499)
Q Consensus       170 ~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~----  237 (499)
                      +...+.|+.|++++|.+....    ...+...+.|++|+|++|.+++.    +...+...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            334455555555555554221    22334456677777777766642    123355566777777777755422    


Q ss_pred             ---CcccccCCCCCCEEEccCCc
Q 010856          238 ---IPASLEKLSYLENLNLSFNK  257 (499)
Q Consensus       238 ---~~~~~~~l~~L~~L~l~~N~  257 (499)
                         +...+...++|+.|+++++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence               23444556777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=1.2e-06  Score=72.88  Aligned_cols=62  Identities=10%  Similarity=-0.067  Sum_probs=33.2

Q ss_pred             CCCCccEEEccCCccccc----CcccccCCcCCceeeCcCCcCCCC-------CCccccCCCCCCEEeCCCCc
Q 010856          172 NLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQGS-------IPDSFGDLISLKFLNLSNNN  233 (499)
Q Consensus       172 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~l~~N~  233 (499)
                      ..+.|+.|++++|.++..    +...+...++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            344555555555555432    122344556677777766654432       12334455777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=7.9e-06  Score=67.63  Aligned_cols=88  Identities=17%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             cCCCCccEEEccCCcccccC----cccccCCcCCceeeCcCCcCCCC----CCccccCCCCCCEEeC--CCCcCCc----
Q 010856          171 GNLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLQGS----IPDSFGDLISLKFLNL--SNNNLSG----  236 (499)
Q Consensus       171 ~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l--~~N~l~~----  236 (499)
                      ...++|++|++++|.++...    ...+...++++.+++++|.+...    +...+...++|+.++|  ++|++..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            34455555555555554321    12234456667777776666532    1234555667776544  4555643    


Q ss_pred             cCcccccCCCCCCEEEccCCcC
Q 010856          237 AIPASLEKLSYLENLNLSFNKL  258 (499)
Q Consensus       237 ~~~~~~~~l~~L~~L~l~~N~l  258 (499)
                      .+...+...++|+.|+++.+..
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEeCcCCCC
Confidence            2334455677777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.43  E-value=1.2e-05  Score=66.39  Aligned_cols=87  Identities=13%  Similarity=0.089  Sum_probs=42.7

Q ss_pred             CCCCCcEEEcCCCcCCCC----CcccccCCCCccEEEccCCccccc----CcccccCCcCCceeeC--cCCcCCCC----
Q 010856          148 NLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFL--GYNRLQGS----  213 (499)
Q Consensus       148 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~----  213 (499)
                      ..+.|++|++++|.++..    +...+...+.++.+++++|.+...    +...+...++|+.++|  ++|.+...    
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            344444455544444321    111233345555555555555422    1234455666665444  45555431    


Q ss_pred             CCccccCCCCCCEEeCCCCcC
Q 010856          214 IPDSFGDLISLKFLNLSNNNL  234 (499)
Q Consensus       214 ~~~~l~~l~~L~~L~l~~N~l  234 (499)
                      +...+...++|+.|+++.+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            233445667778887776643

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.73  E-value=0.0039  Score=54.72  Aligned_cols=88  Identities=15%  Similarity=0.029  Sum_probs=51.0

Q ss_pred             HHHHHHhhhcccccccccCCcceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC-CCCccccceeEEccccc
Q 010856          354 LELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR-HRNLIKILHGVAVITFT  432 (499)
Q Consensus       354 ~~~~~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~-H~niv~l~~~~~~~~~~  432 (499)
                      .++....+.|...+..+-++-+.||+... +++.+.+|+...........+.+|...+..+. +--+.+++++.... . 
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~-~-   83 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHD-G-   83 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEET-T-
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecC-C-
Confidence            34555556677666544455578998865 55677888886554444455778888876553 32245555544332 2 


Q ss_pred             eeeeeecccCCC
Q 010856          433 VCLCLFHHSSAS  444 (499)
Q Consensus       433 ~~~~l~~~~~~~  444 (499)
                      ..+++++++.|.
T Consensus        84 ~~~lv~~~l~G~   95 (263)
T d1j7la_          84 WSNLLMSEADGV   95 (263)
T ss_dssp             EEEEEEECCSSE
T ss_pred             ceEEEEEecccc
Confidence            223355555543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=86.78  E-value=0.54  Score=39.88  Aligned_cols=71  Identities=13%  Similarity=-0.006  Sum_probs=42.6

Q ss_pred             cccCCc-ceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCCCCC--ccccceeEEccccceeeeeecccCCC
Q 010856          369 IGKGGF-GSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRN--LIKILHGVAVITFTVCLCLFHHSSAS  444 (499)
Q Consensus       369 lg~G~~-g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~H~n--iv~l~~~~~~~~~~~~~~l~~~~~~~  444 (499)
                      +..|.. +.||+....++..+.+|.-.....   ..+.+|.+.++.+....  +.+++++.... . ..+++++++.|.
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~---~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~-~-~~~~v~~~i~G~   91 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL---NELQDEAARLSWLATTGVPCAAVLDVVTEA-G-RDWLLLGEVPGQ   91 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCTT---SCHHHHHHHHHHHHTTTCCBCCEEEEEECS-S-CEEEEEECCSSE
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccCH---hHHHHHHHHHHHHHhcCCCCCceeeecccc-c-ceEEEEEeeecc
Confidence            344443 678999887787788887654432   34677888777653322  44555554432 2 234566777654

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=81.75  E-value=0.51  Score=42.06  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=31.6

Q ss_pred             cceEEEEEeCCCCEEEEEEeeccCCccHHHHHHHHHHHhcCC
Q 010856          374 FGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR  415 (499)
Q Consensus       374 ~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~il~~l~  415 (499)
                      --.||+++.++|+.|++|+..... ...+++..|.+.+..+.
T Consensus        35 EN~vy~v~~~dg~~~VlK~~rp~~-~s~~~i~~E~~~l~~L~   75 (325)
T d1zyla1          35 ENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLV   75 (325)
T ss_dssp             SSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEcCCCCEEEEEEeCCCC-CCHHHHHHHHHHHHHHH
Confidence            358999998899999999987653 23466888888877664

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=80.69  E-value=0.96  Score=41.38  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=36.3

Q ss_pred             ccccccCCcceEEEEEeC-CCCEEEEEEeeccC-------CccHHHHHHHHHHHhcC-CC--CCcccccee
Q 010856          366 NNLIGKGGFGSVYKARLG-DRMEVAVKVFNLQC-------GRAFESFDVECEMMKNI-RH--RNLIKILHG  425 (499)
Q Consensus       366 ~~~lg~G~~g~v~~~~~~-~~~~vavK~~~~~~-------~~~~~~~~~E~~il~~l-~H--~niv~l~~~  425 (499)
                      .+.+|.|....||+.... +++.|.+|.-....       ....++...|.+.++.+ .+  ..+.+++++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~  101 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS  101 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE
Confidence            346899999999999864 46788898754311       11234556788777654 22  345555543