Citrus Sinensis ID: 010877

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP

ccccHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccHHHHHHEEcccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHcccccccccccccccccccccccccccccccccc

mskcgyiarlelqpsisnlgydlklenfpggseTFEIILKFCyglpiafnpnniaplrcasefldmseeyedgnliskTEAFLTLVILSSWKETITVLKScknlspwaENLQIVRRCCDSIAWkasrensttedianrqgwwfddvatlGIDHFMRIITTIkvkgtkpeiIGKCIMHYAKKWlpgmdveleglrgygygkhELQFSILNAGKEEVSVGQKEQRTIIENLVNllphqdegvscKFFLQMLKMAMVYNASPALISELEKRVGMMLedanandllipnyknedhaklnspehntmhnIDVVQRIMDYFLMHEQQQQQKQqnmgktnshpslsehDRRRLCKlmnceklslDACTHaaqndrlplRTVVQVLFSEQVKMRTAmqetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKnsfhskadadetgnrrqtfnstsrrtsfrrrpslp

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWkasrensttedianrqgwwFDDVATLGIDHFMRIITTikvkgtkpeiIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAklnspehntmHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNSHPSLSEHDRRRLCKLMNCEKLSLDACTHaaqndrlplRTVVQVLFSEQVKMRTAMQetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKlsnkhkivsswslgwrkIKNSFhskadadetgnrrqtfnstsrrtsfrrrpslp

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEqqqqqkqqNMGKTNSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGnrrqtfnstsrrtsfrrrPSLP

***CGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY***************MHNIDVVQRIMDYFLM****************************LCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQ******************************************************************HKIVSSWSLGWRKIK***********************************

*SKCGYI***************LKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENST*EDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPG***********************************EQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY*******************DVVQRIMDYFLMHEQQQQQKQQN*****************LCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFS**********************************************************************************************************************

MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGK********EQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMH***********************DRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMR**********************STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSK*****************************

**KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN*******NRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMD******************************GQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQ******************STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN***************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		498	2.2.26 [Sep-21-2011]
Q9LFU0		607	Putative BTB/POZ domain-c	yes	no	0.967	0.794	0.540	1e-159
Q5KS50		762	Coleoptile phototropism p	yes	no	0.604	0.395	0.381	1e-74
Q9FMF5		746	Root phototropism protein	no	no	0.576	0.384	0.390	1e-73
Q9FNB3		591	Putative BTB/POZ domain-c	no	no	0.865	0.729	0.329	1e-64
Q94A73		668	BTB/POZ domain-containing	no	no	0.765	0.570	0.319	2e-61
Q66GP0		604	BTB/POZ domain-containing	no	no	0.738	0.609	0.311	2e-60
Q9SN21		526	Putative BTB/POZ domain-c	no	no	0.698	0.661	0.337	5e-58
Q9FN09		579	BTB/POZ domain-containing	no	no	0.672	0.578	0.311	6e-58
Q8LPQ3		569	BTB/POZ domain-containing	no	no	0.905	0.792	0.280	6e-57
Q0WL52		580	BTB/POZ domain-containing	no	no	0.765	0.656	0.308	2e-56

>sp\|Q9LFU0\|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1	Back alignment and function desciption

 Score =  563 bits (1450), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 298/551 (54%), Positives = 382/551 (69%), Gaps = 69/551 (12%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct: 71  ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct: 131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query: 121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
           +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct: 191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query: 180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
             +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct: 251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query: 238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSP 297
             VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +    
Sbjct: 310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER--- 366

Query: 298 EHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGK-------------------------- 331
                       RI ++FLMHEQQQ   + ++ K                          
Sbjct: 367 -----------VRIFEFFLMHEQQQVLGKPSISKLLDNYLAEIAKDPYLPITKFQVLAEM 415

Query: 332 -------------------TNSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLR 372
                                +HPSLS+HDRRRLCK MNCEKLSLDAC HAAQNDRLPLR
Sbjct: 416 LPENAWKCHDGLYRAIDMFLKTHPSLSDHDRRRLCKTMNCEKLSLDACLHAAQNDRLPLR 475

Query: 373 TVV----QVLFSEQVKMRTAMQETEPALQCDNS-EQGDTQPSTSIE-IKNLREELENVKT 426
           T+V    QVLFSEQVKMR  MQ+  P  + +NS  + D + S   E IK L+EELENVK 
Sbjct: 476 TIVQINTQVLFSEQVKMRMMMQDKLPEKEEENSGGREDKRMSRDNEIIKTLKEELENVKK 535

Query: 427 RMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTS 486
           +M+ELQ DY+ELQ+EYE+LS+K K   +W L W+K+K SF +K + +ET  R +  +ST 
Sbjct: 536 KMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEETRERTRRRSSTG 595

Query: 487 RRTSFRRRPSL 497
           +RTSFRRR S+
Sbjct: 596 QRTSFRRRMSM 606

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5KS50\|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1	Back alignment and function description

>sp\|Q9FMF5\|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2	Back alignment and function description

>sp\|Q9FNB3\|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1	Back alignment and function description

>sp\|Q94A73\|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2	Back alignment and function description

>sp\|Q66GP0\|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2	Back alignment and function description

>sp\|Q9SN21\|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970 OS=Arabidopsis thaliana GN=At3g49970 PE=3 SV=1	Back alignment and function description

>sp\|Q9FN09\|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1	Back alignment and function description

>sp\|Q8LPQ3\|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2	Back alignment and function description

>sp\|Q0WL52\|NPY5_ARATH BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		498
255580882		643	Root phototropism protein, putative [Ric	0.997	0.772	0.637	0.0
429326652		637	transposase [Populus tomentosa]	0.989	0.773	0.635	0.0
224093756		544	predicted protein [Populus trichocarpa]	0.919	0.841	0.651	0.0
224081144		540	predicted protein [Populus trichocarpa]	0.927	0.855	0.647	0.0
356528467		626	PREDICTED: putative BTB/POZ domain-conta	0.961	0.765	0.626	0.0
356511091		629	PREDICTED: putative BTB/POZ domain-conta	0.961	0.761	0.617	0.0
449439029		616	PREDICTED: putative BTB/POZ domain-conta	0.979	0.792	0.558	1e-167
449483335		616	PREDICTED: putative BTB/POZ domain-conta	0.979	0.792	0.558	1e-167
72384490		630	80A08_21 [Brassica rapa subsp. pekinensi	0.991	0.784	0.538	1e-158
15238110		607	Phototropic-responsive NPH3 family prote	0.967	0.794	0.540	1e-158

>gi\|255580882\|ref\|XP_002531260.1\| Root phototropism protein, putative [Ricinus communis] gi\|223529145\|gb\|EEF31124.1\| Root phototropism protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/551 (63%), Positives = 408/551 (74%), Gaps = 54/551 (9%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLELQPSISN GY+LKLENFPGGSE FEIILKFCYGLP+  NPNNIA LRCA
Sbjct: 92  VSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFEIILKFCYGLPLDLNPNNIAALRCA 151

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE EDGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 152 SEFLEMSEELEDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 211

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKASR+NST  +I N +GWWFDDVATL  DHFMRI+T ++ KG KPEI GKCIMHYA 
Sbjct: 212 IAWKASRDNSTVHNIINEEGWWFDDVATLRTDHFMRIVTAVRAKGAKPEITGKCIMHYAS 271

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           +WLPGMDVELEGLRGY YGK+ELQF IL    ++  VG  KEQ+ IIE++V LLP Q E 
Sbjct: 272 RWLPGMDVELEGLRGYRYGKNELQFGILCGRNKDEGVGHSKEQKNIIESIVRLLPPQPEA 331

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK-LNSPE 298
           V CKF L+MLKMA+VY+ASPALISELE RVG+ LE+A+ NDLLIPNYK ED  K +  PE
Sbjct: 332 VPCKFLLKMLKMAIVYSASPALISELEMRVGLTLENASVNDLLIPNYKTEDQVKTMKHPE 391

Query: 299 HNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTN------------------------- 333
           H  M+NI+VVQRI++YFLMHEQ+QQQ Q   GK+N                         
Sbjct: 392 HCVMYNIEVVQRIVEYFLMHEQEQQQLQPMSGKSNVSKLMDNYLAEIARDPNLSITKFQV 451

Query: 334 -------------------------SHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDR 368
                                    +HPSLSEHDR+RLCK+MNCEKLSLDAC HAAQNDR
Sbjct: 452 LAEVLPENARTCDDGLYRSIDTYLKTHPSLSEHDRKRLCKVMNCEKLSLDACMHAAQNDR 511

Query: 369 LPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRM 428
           LP+RTV+QVLFSEQVKMR AM+  EPA   +NSEQ  +Q ST  EI  L+ ELENVK +M
Sbjct: 512 LPMRTVIQVLFSEQVKMREAMRGKEPAASGNNSEQEVSQTSTKAEIMTLKTELENVKAKM 571

Query: 429 AELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNS--FHSKADADETGNRRQTFNSTS 486
           AELQ+DYSELQ EY K+++K + +  WS  W+KI+ S  F  K +A+ET   +Q  N   
Sbjct: 572 AELQRDYSELQHEYVKINSKQRHLPGWSFNWKKIRKSSLFSRKTEAEETSEGQQRSNPLI 631

Query: 487 RRTSFRRRPSL 497
            + +FRRR S+
Sbjct: 632 SKINFRRRQSI 642

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|429326652\|gb\|AFZ78666.1\| transposase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|224093756\|ref\|XP_002309978.1\| predicted protein [Populus trichocarpa] gi\|222852881\|gb\|EEE90428.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224081144\|ref\|XP_002306309.1\| predicted protein [Populus trichocarpa] gi\|222855758\|gb\|EEE93305.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356528467\|ref\|XP_003532824.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356511091\|ref\|XP_003524263.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449439029\|ref\|XP_004137290.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449483335\|ref\|XP_004156559.1\| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|72384490\|gb\|AAZ67606.1\| 80A08_21 [Brassica rapa subsp. pekinensis]	Back alignment and taxonomy information

>gi|15238110|ref|NP_196587.1| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] gi|75263871|sp|Q9LFU0.1|DOT3_ARATH RecName: Full=Putative BTB/POZ domain-containing protein DOT3; AltName: Full=Protein DEFECTIVELY ORGANIZED TRIBUTARIES 3 gi|8953406|emb|CAB96681.1| non-phototropic hypocotyl 3-like protein [Arabidopsis thaliana] gi|332004130|gb|AED91513.1| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		498
TAIR\|locus:2145387		607	DOT3 "DEFECTIVELY ORGANIZED TR	0.610	0.500	0.593	7.8e-144
TAIR\|locus:2173418		746	NPH3 "NON-PHOTOTROPIC HYPOCOTY	0.206	0.138	0.640	2.6e-96
TAIR\|locus:2173204		591	AT5G13600 [Arabidopsis thalian	0.630	0.531	0.361	8.7e-67
TAIR\|locus:2028160		665	AT1G30440 [Arabidopsis thalian	0.212	0.159	0.433	1.9e-63
TAIR\|locus:2143558		592	AT5G03250 [Arabidopsis thalian	0.580	0.488	0.320	5.4e-63
TAIR\|locus:504954965		604	AT5G67385 [Arabidopsis thalian	0.586	0.483	0.342	1.8e-62
TAIR\|locus:2200286		631	AT1G67900 [Arabidopsis thalian	0.584	0.461	0.340	4.8e-60
TAIR\|locus:2077763		617	AT3G08570 [Arabidopsis thalian	0.572	0.461	0.327	8.4e-59
TAIR\|locus:2007564		634	AT1G03010 [Arabidopsis thalian	0.576	0.452	0.366	3.7e-57
TAIR\|locus:2154920		668	AT5G66560 [Arabidopsis thalian	0.228	0.170	0.478	7.8e-57

TAIR\|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 978 (349.3 bits), Expect = 7.8e-144, Sum P(2) = 7.8e-144
 Identities = 191/322 (59%), Positives = 247/322 (76%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct:    71 ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct:   131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query:   121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
             +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct:   191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query:   180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
               +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct:   251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query:   238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSP 297
               VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +    
Sbjct:   310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER--- 366

Query:   298 EHNTMHNIDVVQRIMDYFLMHE 319
                         RI ++FLMHE
Sbjct:   367 -----------VRIFEFFLMHE 377

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

TAIR\|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFU0	DOT3_ARATH	No assigned EC number	0.5408	0.9678	0.7940	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		498
pfam03000		249	pfam03000, NPH3, NPH3 family	3e-57
pfam03000		249	pfam03000, NPH3, NPH3 family	9e-10

>gnl\|CDD\|217312 pfam03000, NPH3, NPH3 family	Back alignment and domain information

 Score =  190 bits (484), Expect = 3e-57
 Identities = 73/211 (34%), Positives = 116/211 (54%), Gaps = 37/211 (17%)

Query: 141 WWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGK 200
           WWF+D++ L ID F R+IT +K +G KPE+IG+ +MHYAKKWLPG               
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPG--------------- 47

Query: 201 HELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPA 260
                  L+         ++EQR ++E +V+LLP +   VSC F  ++L+ A++  AS +
Sbjct: 48  -------LSRSGSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASES 100

Query: 261 LISELEKRVGMMLEDANANDLLIPN-YKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHE 319
              ELE+R+G+ L+ A  +DLLIP+ Y  E+          T++++D+VQRI++ FL  +
Sbjct: 101 CREELERRIGLQLDQATLDDLLIPSGYSGEE----------TLYDVDLVQRILEVFLSRD 150

Query: 320 QQQQQKQQNMGKTNSHPSLSEHDRRRLCKLM 350
                  Q+    +S  S S     ++ KL+
Sbjct: 151 ----AATQSSDDEDSEASPSSSSLLKVAKLV 177

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

>gnl\|CDD\|217312 pfam03000, NPH3, NPH3 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		498
PF03000		258	NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr	100.0
PF00651		111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.02
smart00225		90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.88
PHA03098		534	kelch-like protein; Provisional	97.55
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	96.51
PHA02713		557	hypothetical protein; Provisional	96.5
PHA02790		480	Kelch-like protein; Provisional	95.98
PF11822		317	DUF3342: Domain of unknown function (DUF3342); Int	88.38
smart00512		104	Skp1 Found in Skp1 protein family. Family of Skp1	81.4

>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana	Back alignment and domain information

Probab=100.00  E-value=5.6e-65  Score=505.02  Aligned_cols=198  Identities=43%  Similarity=0.855  Sum_probs=174.2

Q ss_pred             CCcchhcccccChhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccc
Q 010877          139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG  218 (498)
Q Consensus       139 ~dWW~eDl~~L~id~f~rvi~am~~kg~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (498)
                      +|||||||+.|++|+|+|||.+|+++||+|++||++|+|||+||||++.....+...               ...+.+..
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~---------------~~~~~~~~   65 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSS---------------SAESSTSS   65 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccc---------------cccccchh
Confidence            489999999999999999999999999999999999999999999998543111100               01233456


Q ss_pred             hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhcccccccccccCCCCccccccCCCC
Q 010877          219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE  298 (498)
Q Consensus       219 ~~~qr~llEtiV~lLP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LEkRIg~qLdqAtldDLLIPs~~~~~~~~~~~~~  298 (498)
                      ..+||.+||+||+|||+|+++|||+|||+|||+|+++++|++||.+||+|||+|||||||+|||||+.+...+       
T Consensus        66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~-------  138 (258)
T PF03000_consen   66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGED-------  138 (258)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCccc-------
Confidence            8899999999999999999999999999999999999999999999999999999999999999999322322       


Q ss_pred             CCccccHHHHHHHHHHHHhhhhh---------------hhhhhhhccc--------------------------------
Q 010877          299 HNTMHNIDVVQRIMDYFLMHEQQ---------------QQQKQQNMGK--------------------------------  331 (498)
Q Consensus       299 ~~tlyDVdlV~Ril~~Fl~~~~~---------------~~~~~~kVak--------------------------------  331 (498)
                        |+||||+|+|||++||.+++.               ..+++.+|||                                
T Consensus       139 --t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR  216 (258)
T PF03000_consen  139 --TLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR  216 (258)
T ss_pred             --chhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence              999999999999999998431               1247788888                                


Q ss_pred             -------------cccCCCCCHHHHhhhhcccccccCCHHHh
Q 010877          332 -------------TNSHPSLSEHDRRRLCKLMNCEKLSLDAC  360 (498)
Q Consensus       332 -------------LKaHP~Lse~ER~~lCr~mdcqKLS~EAc  360 (498)
                                   ||+||+||++||++||++|||||||+|||
T Consensus       217 ~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  217 PSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             hccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence                         99999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins	Back alignment and domain information

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised	Back alignment and domain information

>smart00512 Skp1 Found in Skp1 protein family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		498
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 73/451 (16%), Positives = 138/451 (30%), Gaps = 125/451 (27%)

Query: 53  NIAPLRCASEFLDMSEE--YE-DGNLISKTEAFLTLVI-LSSWKETITVLKSCKNLSPWA 108
           N+         L+M ++  Y+ D N  S+++    + + + S +  +  L   K   P+ 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYE 244

Query: 109 ENLQIVRRCCDSIAWKA----SRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVK 164
             L ++    ++ AW A     +   TT           D ++     H    I+     
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-----TDFLSAATTTH----ISLDHHS 295

Query: 165 G--TKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAG-KEEVS----- 216
              T  E+    +     K+L   D   + L       +  + SI+    ++ ++     
Sbjct: 296 MTLTPDEVKSLLL-----KYL---DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 217 --VGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLE 274
             V   +  TIIE+ +N+L                         PA   ++  R+ +   
Sbjct: 348 KHVNCDKLTTIIESSLNVL------------------------EPAEYRKMFDRLSVFPP 383

Query: 275 DANANDLLIPNYKNEDHAKL------NSPEHNTMHNIDVVQRIMDYFL-----------M 317
            A+     IP         L      +  + + M    VV ++  Y L           +
Sbjct: 384 SAH-----IP-------TILLSLIWFDVIKSDVM---VVVNKLHKYSLVEKQPKESTISI 428

Query: 318 HEQQQQQKQQNMGKTNSHPSLSEHDRRRLCKLMN-CEKLSLDA--CTH-------AAQND 367
                + K +   +   H S+ +H         +      LD    +H           +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 368 RLPL-RTVVQVL-FSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVK 425
           R+ L R V     F EQ K+R        A     S            I N  ++L+  K
Sbjct: 489 RMTLFRMVFLDFRFLEQ-KIR----HDSTAWNASGS------------ILNTLQQLKFYK 531

Query: 426 TRMAELQKDYSELQREYEKLSNKH--KIVSS 454
             + +    Y  L         K    ++ S
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICS 562

PyMOL of 1vt4

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		498
3i3n_A		279	Kelch-like protein 11; structural genomics, BTB, K	98.61
3hve_A		256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.45
2vkp_A		109	BTB/POZ domain-containing protein 6; protein-bindi	98.34
1buo_A		121	POZ domain, protein (promyelocytic leukemia zinc f	98.31
3htm_A		172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.28
3b84_A		119	Zinc finger and BTB domain-containing protein 48;	98.26
2if5_A		120	Zinc finger and BTB domain-containing protein 7A;	98.25
2vpk_A		116	Myoneurin; transcription regulation, transcription	98.22
1r29_A		127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.17
2ppi_A		144	Gigaxonin; BTB domain, protein degradation, struct	98.14
2yy9_A		135	Zinc finger and BTB domain-containing protein 48;	98.13
4eoz_A		145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.1
3ga1_A		129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.09
2z8h_A		138	Transcription regulator protein BACH1; BTB, POZ, d	98.09
2q81_A		119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	98.09
3ohu_A		125	Transcription regulator protein BACH2; BTB/POZ dom	97.98
2ihc_A		124	Transcription regulator protein BACH1; BRIC-A-BRAC	97.81
3m5b_A		119	Zinc finger and BTB domain-containing protein 32;	97.75
3hqi_A		312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.74
3fkc_A		116	Transcriptional regulator kaiso; zinc finger and B	97.68
4ajy_C		97	Transcription elongation factor B polypeptide 1; E	96.37
2ast_A		159	S-phase kinase-associated protein 1A; SCF-substrat	95.92
1fs1_B		141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	92.31
2p1m_A		160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	92.04
2yy0_A		53	C-MYC-binding protein; conserved hypothetical prot	86.23
3v7d_A		169	Suppressor of kinetochore protein 1; WD 40 domain,	83.51
2fnj_C		96	Transcription elongation factor B polypeptide 1; b	81.78
3vmx_A		48	Voltage-gated hydrogen channel 1; coiled-coil, ION	81.04

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A	Back alignment and structure

Probab=98.61  E-value=5.1e-08  Score=95.73  Aligned_cols=199  Identities=11%  Similarity=0.166  Sum_probs=133.3

Q ss_pred             ccccHHHHHhcCCCCCCCccceeecCC----CCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHH
Q 010877            2 SKCGYIARLELQPSISNLGYDLKLENF----PGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLIS   77 (498)
Q Consensus         2 Sksg~l~rli~~~~~~~~~~~i~L~df----PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~   77 (498)
                      ++|.||+.++...-.+.....|.|+++    .-.+++|+.+.+|+|+..+++++.||..|..||.+|+|.+      |..
T Consensus        56 a~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~  129 (279)
T 3i3n_A           56 AATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKE  129 (279)
T ss_dssp             HHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHH
T ss_pred             HcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHH
Confidence            478999999874322213457889876    4578999999999999999999999999999999999986      999


Q ss_pred             HHHHHhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHhhccCCccccccccCCCcchhcccccChhHH
Q 010877           78 KTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHF  154 (498)
Q Consensus        78 ktE~fL~~vvl~sW~dsi~vLksCe~Llp~AE~l~---iv~RCidsia~ka~~~~~~~~~~~~~~dWW~eDl~~L~id~f  154 (498)
                      .++.||.+.+-.         ..|-.++.+|+..+   +...|.+-|+.....       +     +--++...|+.+..
T Consensus       130 ~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~-------v-----~~~~~f~~L~~~~l  188 (279)
T 3i3n_A          130 FCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRNFHK-------V-----IQDEEFYTLPFHLI  188 (279)
T ss_dssp             HHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHH-------H-----TTSSGGGGSCHHHH
T ss_pred             HHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------H-----hcCcChhcCCHHHH
Confidence            999999885422         24555556666655   677888877654311       0     11256678888877


Q ss_pred             HHHHHHHHhcC--CC-chhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhHHHHHHHHHH
Q 010877          155 MRIITTIKVKG--TK-PEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVN  231 (498)
Q Consensus       155 ~rvi~am~~kg--~~-~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiV~  231 (498)
                      ..++..   -.  +. .+.|-.+++.|++.-.                                    .+.+..+..+..
T Consensus       189 ~~lL~~---d~L~v~sE~~vf~av~~W~~~~~------------------------------------~~r~~~~~~ll~  229 (279)
T 3i3n_A          189 RDWLSD---LEITVDSEEVLFETVLKWVQRNA------------------------------------EERERYFEELFK  229 (279)
T ss_dssp             HHHHTC---SSCCCSCHHHHHHHHHHHHHTTH------------------------------------HHHTTTHHHHHT
T ss_pred             HHHhcC---cCCCCCCHHHHHHHHHHHHHcCH------------------------------------HHHHHHHHHHHH
Confidence            766653   32  33 4456666655543110                                    011122333333


Q ss_pred             hcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010877          232 LLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKR  268 (498)
Q Consensus       232 lLP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LEkR  268 (498)
                      .+  -=..+|..+|..+++..-.+..++.|+.-+..-
T Consensus       230 ~V--Rf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea  264 (279)
T 3i3n_A          230 LL--RLSQMKPTYLTRHVKPERLVANNEVCVKLVADA  264 (279)
T ss_dssp             TS--CGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred             hc--CCCCCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence            22  124588999999999888889999998877543

PyMOL of 3i3n

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B	Back alignment and structure

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}	Back alignment and structure

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A	Back alignment and structure

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}	Back alignment and structure

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}	Back alignment and structure

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A	Back alignment and structure

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}	Back alignment and structure

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A	Back alignment and structure

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}	Back alignment and structure

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}	Back alignment and structure

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}	Back alignment and structure

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}	Back alignment and structure

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}	Back alignment and structure

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A	Back alignment and structure

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A	Back alignment and structure

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}	Back alignment and structure

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0	Back alignment and structure

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A	Back alignment and structure

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A	Back alignment and structure

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*	Back alignment and structure

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D	Back alignment and structure

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*	Back alignment and structure

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}	Back alignment and structure

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*	Back alignment and structure

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B	Back alignment and structure

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		498
d1r29a_		122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.39
d1buoa_		121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.38
d1hv2a_		99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	81.87

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.8e-07  Score=79.52  Aligned_cols=76  Identities=18%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             ccccHHHHHhcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHHHHHH
Q 010877            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (498)
Q Consensus         2 Sksg~l~rli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~ktE~   81 (498)
                      ++|+||+.++...........+.+.|+  .|++|+.+.+|+|+++++++..||..+.+||+||+|.+      |+..++.
T Consensus        46 ~~S~~F~~~f~~~~~e~~~~~~~~~~v--~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~  117 (122)
T d1r29a_          46 ACSGLFYSIFTDQLKRNLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCRK  117 (122)
T ss_dssp             HHCHHHHHHHTSTTTTTCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             hCCHHHHHHhccchhhhcceeeeeccc--CHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHH------HHHHHHH
Confidence            479999999865433212222333444  57999999999999999999999999999999999986      9999999


Q ss_pred             Hhhh
Q 010877           82 FLTL   85 (498)
Q Consensus        82 fL~~   85 (498)
                      ||..
T Consensus       118 ~L~~  121 (122)
T d1r29a_         118 FIKA  121 (122)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9874

PyMOL of d1r29a_

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure