Citrus Sinensis ID: 010888
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | 2.2.26 [Sep-21-2011] | |||||||
| Q8IYT4 | 538 | Katanin p60 ATPase-contai | yes | no | 0.630 | 0.583 | 0.583 | 1e-100 | |
| A0JMA9 | 542 | Katanin p60 ATPase-contai | yes | no | 0.630 | 0.579 | 0.580 | 3e-99 | |
| Q9D3R6 | 539 | Katanin p60 ATPase-contai | yes | no | 0.618 | 0.571 | 0.583 | 5e-99 | |
| Q3B8D5 | 505 | Katanin p60 ATPase-contai | N/A | no | 0.554 | 0.546 | 0.504 | 6e-78 | |
| Q5RII9 | 485 | Katanin p60 ATPase-contai | no | no | 0.602 | 0.618 | 0.491 | 3e-77 | |
| Q5XIK7 | 488 | Katanin p60 ATPase-contai | no | no | 0.610 | 0.622 | 0.480 | 3e-76 | |
| Q0IIR9 | 492 | Katanin p60 ATPase-contai | no | no | 0.588 | 0.595 | 0.486 | 5e-76 | |
| Q9SEX2 | 523 | Katanin p60 ATPase-contai | no | no | 0.586 | 0.558 | 0.468 | 8e-76 | |
| Q8K0T4 | 488 | Katanin p60 ATPase-contai | yes | no | 0.610 | 0.622 | 0.477 | 8e-76 | |
| Q9BW62 | 490 | Katanin p60 ATPase-contai | no | no | 0.610 | 0.620 | 0.480 | 1e-75 |
| >sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/322 (58%), Positives = 239/322 (74%), Gaps = 8/322 (2%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + + L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472
L + TEGYSGSDI+LV +EAAM+P+R++ LE Q + D Q+ + D L
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515
Query: 473 NTRPSAHLHAHRYEKFNADYGS 494
+T+PSA A RY + ++ S
Sbjct: 516 HTKPSAKNLAQRYSDWQREFES 537
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3 |
| >sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/322 (58%), Positives = 238/322 (73%), Gaps = 8/322 (2%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KP+ ++E R LA + RDI +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVF 399
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM + LP + +G E L Y
Sbjct: 400 VLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYST 459
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472
L T+GYSGSDIRLV KEAAM+P+R++ LE + + + + D L
Sbjct: 460 LGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLPVISLDTVTTSDFLEVLA 519
Query: 473 NTRPSAHLHAHRYEKFNADYGS 494
+T+PSA A +Y + ++ S
Sbjct: 520 HTKPSAKSLAEKYAAWQKEFES 541
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 189/324 (58%), Positives = 241/324 (74%), Gaps = 16/324 (4%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + + L Y +
Sbjct: 397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 470
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + LP Q+ + +D
Sbjct: 457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514
Query: 471 LKNTRPSAHLHAHRY----EKFNA 490
L +T+PSA RY EKF +
Sbjct: 515 LAHTKPSAKNLTERYLAWQEKFES 538
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 208/323 (64%), Gaps = 47/323 (14%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KP+ ++E R LA + RDI +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359
+VLFELAR+HAPSTIFLDE+++++SQRG
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTG------------------------------ 369
Query: 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDLL 413
P ELD AMLRRLEKRILV LP EAR+AM + LP + +G E L Y L
Sbjct: 370 ------PGELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPISNSSGVELRMDLDYSTL 423
Query: 414 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG--PIRPEDVEIAL 471
E T+GYSGSDIRLV KEAAM+P+R++ LE + +LP I + D L
Sbjct: 424 GEETDGYSGSDIRLVCKEAAMRPVRKIFDALENHH--SEHKKLPVISLETVTTSDFSEVL 481
Query: 472 KNTRPSAHLHAHRYEKFNADYGS 494
+T+PSA A +Y + ++ S
Sbjct: 482 AHTKPSAKSLAEKYSAWQNEFES 504
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 214/311 (68%), Gaps = 11/311 (3%)
Query: 192 FD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 250
FD E + L ++L RDII +P+V W+ I LE AK+LLKEAVV+P+ P++F G+ P
Sbjct: 177 FDRGGEDKDLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRP 236
Query: 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA 310
WKG+L+ GPPGTGKT+LAKAVATEC+TTFFN+S+S++ SK+RG+SEKL+++LFE+AR +A
Sbjct: 237 WKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA 296
Query: 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-----LVFVLAATNL 365
P+TIF+DEID+I S+RG + EHEASRR+K ELL+QMDG+ + E +V VLAATN
Sbjct: 297 PTTIFIDEIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNF 355
Query: 366 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 425
PW++D A+ RRLEKRI +PLP + R + + L + D + E+ EGYSG+DI
Sbjct: 356 PWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADI 415
Query: 426 RLVSKEAAMQPLRRLMVLLEGRQ-EVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAH 483
V ++A++ +RR + L + P DE+ P ED E ALK S +
Sbjct: 416 TNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMHM--PTTMEDFETALKKVSKSVSAADLE 473
Query: 484 RYEKFNADYGS 494
+YEK+ A++GS
Sbjct: 474 KYEKWIAEFGS 484
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Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 217/314 (69%), Gaps = 10/314 (3%)
Query: 189 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 247
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 176 IPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 235
Query: 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 307
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 236 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 295
Query: 308 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLA 361
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ + E +V VLA
Sbjct: 296 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 354
Query: 362 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + E+TEGYS
Sbjct: 355 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYS 414
Query: 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 480
G+DI + ++A++ +RR + L + A E Q+ P+ D+E+ALK S +
Sbjct: 415 GADITNICRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTRGDLELALKKIAKSVSAA 473
Query: 481 HAHRYEKFNADYGS 494
+YEK+ ++GS
Sbjct: 474 DLEKYEKWMVEFGS 487
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 211/306 (68%), Gaps = 13/306 (4%)
Query: 198 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 257
+ L E+L RDII +P+++W+ I LE AK+LLKEAVV+P+ P++F G+ PWKG+L+
Sbjct: 190 KDLIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMV 249
Query: 258 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 317
GPPGTGKT+LAKAVATECKTTFFNIS+S++ SK+RG+SEKL+++LFE+AR +AP+TIF+D
Sbjct: 250 GPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 309
Query: 318 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLAATNLPWELDA 371
EID+I S+RG + EHEASRR+K ELL+QMDG+ + E +V VLAATN PW++D
Sbjct: 310 EIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDE 368
Query: 372 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKE 431
A+ RRLEKRI +PLP + R + L + + + + E +GYSG+DI V ++
Sbjct: 369 ALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRD 428
Query: 432 AAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKF 488
A++ +RR + L E + ++ DD P ED E+ALK S +YEK+
Sbjct: 429 ASLMAMRRRIEGLTPEEIRNLSRDD---MHMPTTMEDFEMALKKVSKSVSASDIEKYEKW 485
Query: 489 NADYGS 494
++GS
Sbjct: 486 IEEFGS 491
|
Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 214/305 (70%), Gaps = 13/305 (4%)
Query: 200 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 259
LA L RD++ +P V+W+ + GL AKRLL+EAVV+P+ P+YF G+ PWKG+L+FGP
Sbjct: 221 LAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGP 280
Query: 260 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 319
PGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++++ LF+LAR +APSTIF+DEI
Sbjct: 281 PGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEI 340
Query: 320 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWELDAA 372
D++ + RG EHE+SRR+K+ELL+Q+DG++ S ++V VLAATN PW++D A
Sbjct: 341 DSLCNSRG-GSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEA 399
Query: 373 MLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 432
+ RRLEKRI +PLPD E+R+A+ L + + + + RTEGYSG D+ V ++A
Sbjct: 400 LRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDA 459
Query: 433 AMQPLRRLMVLLEGRQEVA--PDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFN 489
+M +RR + + R E+ D++ P+ D E A++ +PS + ++EK+
Sbjct: 460 SMNGMRR-KIAGKTRDEIKNMSKDDISN-DPVAMCDFEEAIRKVQPSVSSSDIEKHEKWL 517
Query: 490 ADYGS 494
+++GS
Sbjct: 518 SEFGS 522
|
Severs microtubules in an ATP-dependent manner. May be required for reorientation of cortical microtubule arrays during cellular elongation. Failure to correctly orient these arrays drastically compromises fiber length, cell wall thickness and mechanical strength. May also be required for the spatial organization of developmental cues within the root. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 217/314 (69%), Gaps = 10/314 (3%)
Query: 189 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 247
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 176 IPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 235
Query: 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 307
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 236 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 295
Query: 308 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLA 361
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ + E +V VLA
Sbjct: 296 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 354
Query: 362 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + ++TEGYS
Sbjct: 355 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYS 414
Query: 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 480
G+DI + ++A++ +RR + L + A E Q+ P+ D+E+ALK S +
Sbjct: 415 GADITNICRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTRGDLELALKKIAKSVSAA 473
Query: 481 HAHRYEKFNADYGS 494
+YEK+ ++GS
Sbjct: 474 DLEKYEKWMVEFGS 487
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 215/314 (68%), Gaps = 10/314 (3%)
Query: 189 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 247
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 178 MPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 237
Query: 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 307
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 238 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 297
Query: 308 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLA 361
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ + E +V VLA
Sbjct: 298 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 356
Query: 362 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + E+ EGYS
Sbjct: 357 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYS 416
Query: 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 480
G+DI V ++A++ +RR + L + A E Q+ P+ D E+ALK S +
Sbjct: 417 GADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTKGDFELALKKIAKSVSAA 475
Query: 481 HAHRYEKFNADYGS 494
+YEK+ ++GS
Sbjct: 476 DLEKYEKWMVEFGS 489
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| 255557305 | 408 | Katanin p60 ATPase-containing subunit, p | 0.803 | 0.980 | 0.815 | 0.0 | |
| 359483871 | 406 | PREDICTED: katanin p60 ATPase-containing | 0.801 | 0.982 | 0.8 | 0.0 | |
| 388503432 | 404 | unknown [Lotus japonicus] | 0.801 | 0.987 | 0.789 | 0.0 | |
| 356512187 | 403 | PREDICTED: katanin p60 ATPase-containing | 0.801 | 0.990 | 0.781 | 0.0 | |
| 356524963 | 405 | PREDICTED: katanin p60 ATPase-containing | 0.801 | 0.985 | 0.777 | 0.0 | |
| 297740706 | 397 | unnamed protein product [Vitis vinifera] | 0.783 | 0.982 | 0.780 | 0.0 | |
| 224078976 | 384 | predicted protein [Populus trichocarpa] | 0.759 | 0.984 | 0.787 | 0.0 | |
| 357476445 | 402 | Katanin p60 ATPase-containing subunit A- | 0.805 | 0.997 | 0.752 | 1e-175 | |
| 449505900 | 411 | PREDICTED: katanin p60 ATPase-containing | 0.799 | 0.968 | 0.723 | 1e-166 | |
| 357135895 | 403 | PREDICTED: katanin p60 ATPase-containing | 0.799 | 0.987 | 0.729 | 1e-166 |
| >gi|255557305|ref|XP_002519683.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] gi|223541100|gb|EEF42656.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/411 (81%), Positives = 365/411 (88%), Gaps = 11/411 (2%)
Query: 96 MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDG--------SSLNSNGH 147
MADEP TRW+FQDFK+FYDAKFGRKK+ E + G + V++G ++ N NGH
Sbjct: 1 MADEPSVTRWSFQDFKLFYDAKFGRKKMSETQNG-VAGPAVANGIGNSSTSNATSNGNGH 59
Query: 148 VQNTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRD 207
V+NTSDMA+YEQYR Q + S + NGVL N I++R QK LLP FDSAETRALAE LCRD
Sbjct: 60 VKNTSDMAIYEQYRNQDRSSNHS--NGVLPNGIDDRPQKSLLPAFDSAETRALAEGLCRD 117
Query: 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 267
I+RG+PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML
Sbjct: 118 IVRGNPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 177
Query: 268 AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 327
AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF+DEIDAIISQRG
Sbjct: 178 AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFIDEIDAIISQRG 237
Query: 328 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 387
E RSEHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+
Sbjct: 238 EGRSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPE 297
Query: 388 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447
EARRAM+E LLP Q E+ LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRRLM LLE R
Sbjct: 298 PEARRAMYEELLPPQPDEDKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRLMALLEDR 357
Query: 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
QEV PDDELP++GPI PED+E ALKNTRPSAHLHAHRYEKFNADYGS+ILQ
Sbjct: 358 QEVVPDDELPKVGPITPEDIETALKNTRPSAHLHAHRYEKFNADYGSQILQ 408
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483871|ref|XP_002276286.2| PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/410 (80%), Positives = 364/410 (88%), Gaps = 11/410 (2%)
Query: 96 MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHV 148
MADEP TRW+FQDFKMFYD KFGRKK EPEK + E +PVS+G+S N GHV
Sbjct: 1 MADEPFLTRWSFQDFKMFYDVKFGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHV 58
Query: 149 QNTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDI 208
+NTSD+A+YEQYRTQ +GS + NGVL++ +E+ QK LLP+F+SA+ RAL ESL RDI
Sbjct: 59 KNTSDLAIYEQYRTQERGSANG--NGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDI 116
Query: 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA 268
IRGSPDVKW+SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA
Sbjct: 117 IRGSPDVKWDSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA 176
Query: 269 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328
KAVATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE
Sbjct: 177 KAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGE 236
Query: 329 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 388
RSEHEASRRLKTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+
Sbjct: 237 GRSEHEASRRLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEP 296
Query: 389 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 448
EARRAMFE LLPS GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM LE +
Sbjct: 297 EARRAMFEELLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKA 356
Query: 449 EVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
EV P++ELP++GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 357 EVVPEEELPKVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388503432|gb|AFK39782.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/408 (78%), Positives = 359/408 (87%), Gaps = 9/408 (2%)
Query: 96 MADE-PMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSL----NSNGHVQN 150
MADE PMPTRW+FQDFK++YD+KFGRKK+ + GE ++ V +GSS+ N N H +
Sbjct: 1 MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQ--NGENADKAVGNGSSMSVVSNGNVHSKR 58
Query: 151 TSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIR 210
+SDMA+YEQ R+Q Q T N V N ++ER QK LLP F+SAE R LAESL RDIIR
Sbjct: 59 SSDMAIYEQLRSQGQNGIHT--NDVSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIR 116
Query: 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 270
GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA
Sbjct: 117 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 176
Query: 271 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 330
VATECKTTFFNISASSVVSKWRGDSEKL+KVLF+LARHHAPSTIFLDEIDAIISQRGEAR
Sbjct: 177 VATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEAR 236
Query: 331 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEA 390
SEHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EA
Sbjct: 237 SEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEA 296
Query: 391 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 450
R AMFE LLP Q EES+PYDLLV +TEGYSGSDIRL+ KE AMQPLRRLM LE R+++
Sbjct: 297 RVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDL 356
Query: 451 APDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
P++ELP++GPIRPED++ ALKNTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 357 VPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ 404
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512187|ref|XP_003524802.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/407 (78%), Positives = 358/407 (87%), Gaps = 8/407 (1%)
Query: 96 MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLN----SNGHVQNT 151
MAD+PMPTRW+FQDFK++YDAKFGRKK+ E T++ VS+G+S+ SNG+ +
Sbjct: 1 MADDPMPTRWSFQDFKLYYDAKFGRKKVAE-NGDTATDKAVSNGNSVTVTIVSNGN-KRA 58
Query: 152 SDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRG 211
S+MAVYEQ+R + G NG + +++ER QK LLP F+SAE RALAESL RDIIRG
Sbjct: 59 SEMAVYEQFRGE--GLNQIHTNGFVPTIVDERPQKSLLPPFESAEMRALAESLSRDIIRG 116
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 271
SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV
Sbjct: 117 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 176
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
ATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARS
Sbjct: 177 ATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARS 236
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 391
EHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ AR
Sbjct: 237 EHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVAR 296
Query: 392 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451
RAMFE LLP Q EE +PYD+LV++TEGYSGSDIRL+ KE AMQPLRRLM LE Q+V
Sbjct: 297 RAMFEELLPQQPDEEPIPYDILVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQDVV 356
Query: 452 PDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
P++ELP++GPI+ ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 357 PEEELPKVGPIKSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524963|ref|XP_003531097.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/409 (77%), Positives = 357/409 (87%), Gaps = 10/409 (2%)
Query: 96 MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 149
MAD+PMPTRW+FQDFK+ YDAKFGRKK+ E + + VS+G+ ++ SNG+ +
Sbjct: 1 MADDPMPTRWSFQDFKLCYDAKFGRKKVAE-NGDDAAGKAVSNGNGNSVTVAIVSNGN-K 58
Query: 150 NTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDII 209
S+MAVYEQ+R++ Q T NG + + +ER QK LLP F+SAE RALAESL RDII
Sbjct: 59 RASEMAVYEQFRSEGQNQIHT--NGFVPTLTDERPQKSLLPPFESAEMRALAESLSRDII 116
Query: 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 269
RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK
Sbjct: 117 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 176
Query: 270 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 329
AVATEC TTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEA
Sbjct: 177 AVATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEA 236
Query: 330 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTE 389
RSEHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+
Sbjct: 237 RSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPV 296
Query: 390 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449
ARRAMFE LLP Q GEES+PYD+L ++TEGYSGSDIRL+ KE AMQPLRRLM LE Q+
Sbjct: 297 ARRAMFEELLPQQPGEESIPYDILEDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQNQD 356
Query: 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
V P++ELP++GPIR ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 357 VVPEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740706|emb|CBI30888.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/410 (78%), Positives = 356/410 (86%), Gaps = 20/410 (4%)
Query: 96 MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHV 148
MADEP TRW+FQ FGRKK EPEK + E +PVS+G+S N GHV
Sbjct: 1 MADEPFLTRWSFQ---------FGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHV 49
Query: 149 QNTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDI 208
+NTSD+A+YEQYRTQ +GS + NGVL++ +E+ QK LLP+F+SA+ RAL ESL RDI
Sbjct: 50 KNTSDLAIYEQYRTQERGSANG--NGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDI 107
Query: 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA 268
IRGSPDVKW+SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA
Sbjct: 108 IRGSPDVKWDSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA 167
Query: 269 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328
KAVATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE
Sbjct: 168 KAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGE 227
Query: 329 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 388
RSEHEASRRLKTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+
Sbjct: 228 GRSEHEASRRLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEP 287
Query: 389 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 448
EARRAMFE LLPS GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM LE +
Sbjct: 288 EARRAMFEELLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKA 347
Query: 449 EVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
EV P++ELP++GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 348 EVVPEEELPKVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224078976|ref|XP_002305703.1| predicted protein [Populus trichocarpa] gi|222848667|gb|EEE86214.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/409 (78%), Positives = 342/409 (83%), Gaps = 31/409 (7%)
Query: 96 MADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 149
MADEP TRW+FQDFK FYD KFGRKK E S + + N NGHV
Sbjct: 1 MADEPSVTRWSFQDFKTFYDGKFGRKKAAAAAAAEAEAASDSQQNGQTTVVASNGNGHVN 60
Query: 150 NTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDII 209
N+SDMA+YEQ +K LLP FDSAETRALAESLCRDII
Sbjct: 61 NSSDMAIYEQ-------------------------KKSLLPAFDSAETRALAESLCRDII 95
Query: 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 269
RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK
Sbjct: 96 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 155
Query: 270 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 329
AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA
Sbjct: 156 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 215
Query: 330 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTE 389
RSEHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ E
Sbjct: 216 RSEHEASRRLKTELLIQMDGLTRTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPE 275
Query: 390 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449
AR AMFE LLPSQ EE LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRR+M LLE +E
Sbjct: 276 ARAAMFEELLPSQPDEEKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRIMTLLEDTEE 335
Query: 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
V P+DELP++GPIRPED+E ALKNTRPSAHLHAHRY+KFNADYGS+ILQ
Sbjct: 336 VVPEDELPKVGPIRPEDIETALKNTRPSAHLHAHRYDKFNADYGSQILQ 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476445|ref|XP_003608508.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|355509563|gb|AES90705.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/404 (75%), Positives = 343/404 (84%), Gaps = 3/404 (0%)
Query: 95 AMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDM 154
A DEPMPTRW+F++FK +YD + GRKK+ E + ++ S G + N N H + TSD
Sbjct: 2 AADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENAVSNG-NSSGIASNGNSHGKVTSDR 60
Query: 155 AVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPD 214
A+Y+Q+ Q QG T NG N ++E+ +K LLP F+SAE R LAESL RDIIRGSP+
Sbjct: 61 AIYDQF--QSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPN 118
Query: 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 274
VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE
Sbjct: 119 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 178
Query: 275 CKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHE 334
C TTFFNISASS+VSKWRGDSEKL+KVLFELARHHAP+TIFLDEIDAIISQRGE RSEHE
Sbjct: 179 CNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHE 238
Query: 335 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAM 394
ASRRLKTELLIQMDGL ++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EARRAM
Sbjct: 239 ASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAM 298
Query: 395 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 454
FE LLP Q EE +PYDLLV+RTEGYSGSDIRL+ KE AMQPLRRLM LE +V P++
Sbjct: 299 FEELLPLQPDEEPMPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMTQLEQEPDVVPEE 358
Query: 455 ELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
ELP++GP+ PEDVE AL+NTRPSAHL AH+Y+ FNADYGS+ILQ
Sbjct: 359 ELPKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQILQ 402
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505900|ref|XP_004162599.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 298/412 (72%), Positives = 334/412 (81%), Gaps = 14/412 (3%)
Query: 95 AMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNS--NGHVQNTS 152
A D TRWTFQDFK FYD+ FGRKK + +GE + + + +SL + NG
Sbjct: 2 AAQDYSASTRWTFQDFKRFYDSTFGRKKESKSREGETSNSALKNETSLGTAANGTAHG-P 60
Query: 153 DMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGS 212
++A+YEQ+R Q S S+ G +AN +QKPLLP +SAE R +AES+ RDIIRG+
Sbjct: 61 ELAIYEQFRLQ---SNSSSAPGAVANRNTVTIQKPLLPPLESAEMRNIAESIARDIIRGN 117
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 272
PD+KWE+IKGLE+AK LLKEAVVMPIKYP YF GLLSPWKGILLFGPPGTGKTMLAKAVA
Sbjct: 118 PDIKWETIKGLEHAKHLLKEAVVMPIKYPSYFRGLLSPWKGILLFGPPGTGKTMLAKAVA 177
Query: 273 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332
TECKTTFFNISASSVVSKWRGDSEK IKVLFELARHHAPSTIFLDEIDAIIS RGE RSE
Sbjct: 178 TECKTTFFNISASSVVSKWRGDSEKSIKVLFELARHHAPSTIFLDEIDAIISHRGEGRSE 237
Query: 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 392
HEASRRLKTELLIQMDGL Q+DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EARR
Sbjct: 238 HEASRRLKTELLIQMDGLMQTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARR 297
Query: 393 AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE--- 449
AMFE LLP Q G+E LPYD+L+ERTEGYSGSDIRLV KEAAMQPLRRLM LE +Q
Sbjct: 298 AMFEELLPPQPGDEDLPYDILMERTEGYSGSDIRLVCKEAAMQPLRRLMAQLEEQQNELP 357
Query: 450 -----VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEI 496
V P++ELP+IGPI D++ AL+NTRPSAHL A RYEKFNADYGS++
Sbjct: 358 EDQQGVVPEEELPKIGPITASDIQTALRNTRPSAHLDAPRYEKFNADYGSQL 409
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357135895|ref|XP_003569543.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/406 (72%), Positives = 334/406 (82%), Gaps = 8/406 (1%)
Query: 95 AMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEIT-ERPVSDGSSLNSNG--HVQNT 151
A DEP TRW+F+DF+ +YDA+ G + + + ++ ERP+ GS+ +S H
Sbjct: 2 AAGDEPSITRWSFEDFERYYDARLGIRGEPKGDGNDVDDERPLGSGSAGSSPAAFHANGG 61
Query: 152 SDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRG 211
+D+AV+EQ+ + G NG + LQK LLP F+SAETR LAE+L RDII G
Sbjct: 62 ADLAVFEQFERLNRKVG--LHNGAMEA---RPLQKSLLPPFESAETRNLAETLLRDIIHG 116
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 271
SPDVKWESIKGLE AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV
Sbjct: 117 SPDVKWESIKGLETAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 176
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
ATECKTTFFNISASS+VSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARS
Sbjct: 177 ATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARS 236
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 391
EHEASRRLKTELLIQMDGLT++ ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR
Sbjct: 237 EHEASRRLKTELLIQMDGLTKTRELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEAR 296
Query: 392 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451
AMFE LPS +PYD+LVE TEGYSGSDIRLV KEAAMQPLRRLM +LEG QE
Sbjct: 297 HAMFEEFLPSTPVTMGIPYDVLVENTEGYSGSDIRLVCKEAAMQPLRRLMAVLEGTQEEV 356
Query: 452 PDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEIL 497
P+DELP++GPI ED+E+AL+NTRPSAHLH H+YEKFN DYGS ++
Sbjct: 357 PEDELPEVGPIAAEDIELALRNTRPSAHLHTHKYEKFNQDYGSHVI 402
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| TAIR|locus:2062274 | 393 | CCP1 "conserved in ciliated sp | 0.779 | 0.987 | 0.739 | 9.5e-153 | |
| UNIPROTKB|Q8IYT4 | 538 | KATNAL2 "Katanin p60 ATPase-co | 0.630 | 0.583 | 0.590 | 3.9e-92 | |
| UNIPROTKB|E2RK60 | 535 | KATNAL2 "Uncharacterized prote | 0.626 | 0.583 | 0.586 | 6.3e-92 | |
| UNIPROTKB|J9P5W4 | 378 | KATNAL2 "Uncharacterized prote | 0.626 | 0.825 | 0.586 | 6.3e-92 | |
| UNIPROTKB|E1BAN2 | 534 | KATNAL2 "Uncharacterized prote | 0.626 | 0.584 | 0.583 | 1e-91 | |
| UNIPROTKB|E1BZ64 | 466 | KATNAL2 "Uncharacterized prote | 0.630 | 0.673 | 0.583 | 1.7e-91 | |
| UNIPROTKB|J9PBP3 | 598 | KATNAL2 "Uncharacterized prote | 0.608 | 0.506 | 0.6 | 4.5e-91 | |
| MGI|MGI:1924234 | 539 | Katnal2 "katanin p60 subunit A | 0.618 | 0.571 | 0.583 | 5.7e-91 | |
| RGD|1564708 | 522 | Katnal2 "katanin p60 subunit A | 0.622 | 0.593 | 0.583 | 1.2e-90 | |
| ZFIN|ZDB-GENE-051113-156 | 485 | katnal2 "katanin p60 subunit A | 0.600 | 0.616 | 0.554 | 9.7e-80 |
| TAIR|locus:2062274 CCP1 "conserved in ciliated species and in the land plants 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1490 (529.6 bits), Expect = 9.5e-153, P = 9.5e-153
Identities = 298/403 (73%), Positives = 339/403 (84%)
Query: 98 DEPMPTRWTFQDFKMFYDAKFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVY 157
DEP TRW+F +FK FYDAKFGRKK+ E + ++P DGSS +NG V N S V
Sbjct: 4 DEPSQTRWSFLEFKTFYDAKFGRKKLPEEDVSN-KDQP-EDGSSNGNNGDVNNNSS-PVT 60
Query: 158 EQYRTQFQGSGSTCL-NGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVK 216
Q G+T L NG NVI E+ +K + P F+SAETR LAESL RDIIRG+P++K
Sbjct: 61 NQ-------DGNTALANG---NVIREKPKKSMFPPFESAETRTLAESLSRDIIRGNPNIK 110
Query: 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 276
WESIKGLENAK+LLKEAVVMPIKYP YF GLL+PWKGILLFGPPGTGKTMLAKAVATEC
Sbjct: 111 WESIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVATECN 170
Query: 277 TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG-EARSEHEA 335
TTFFNISASSVVSKWRGDSEKLI+VLF+LARHHAPSTIFLDEIDAIISQRG E RSEHEA
Sbjct: 171 TTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEA 230
Query: 336 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 395
SRRLKTELLIQMDGL +++ELVFVLAATNLPWELDAAMLRRLEKRILVPLPD EARR MF
Sbjct: 231 SRRLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPDPEARRGMF 290
Query: 396 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDE 455
E L+PSQ G+E LP+D+LVE++EGYSGSDIR++ KEAAMQPLRR + +LE R++V P+DE
Sbjct: 291 EMLIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPEDE 350
Query: 456 LPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
LP+IGPI PED++ AL NTRPSAHLHAH Y+KFN DYGS+IL+
Sbjct: 351 LPKIGPILPEDIDRALSNTRPSAHLHAHLYDKFNDDYGSQILK 393
|
|
| UNIPROTKB|Q8IYT4 KATNAL2 "Katanin p60 ATPase-containing subunit A-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 190/322 (59%), Positives = 240/322 (74%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP S+ E L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472
L + TEGYSGSDI+LV +EAAM+P+R++ LE Q + D Q+ + D L
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515
Query: 473 NTRPSAHLHAHRYEKFNADYGS 494
+T+PSA A RY + ++ S
Sbjct: 516 HTKPSAKNLAQRYSDWQREFES 537
|
|
| UNIPROTKB|E2RK60 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 190/324 (58%), Positives = 241/324 (74%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 213 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 272
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 273 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 332
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 333 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 392
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 393 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 452
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 470
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 453 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 510
Query: 471 LKNTRPSAHLHAHRYEKFNADYGS 494
L +T+PSA RY + +++ S
Sbjct: 511 LAHTKPSAKNLTQRYSAWQSEFES 534
|
|
| UNIPROTKB|J9P5W4 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 190/324 (58%), Positives = 241/324 (74%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 56 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 115
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 116 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 175
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 176 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 235
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 236 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 295
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 470
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 296 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 353
Query: 471 LKNTRPSAHLHAHRYEKFNADYGS 494
L +T+PSA RY + +++ S
Sbjct: 354 LAHTKPSAKNLTQRYSAWQSEFES 377
|
|
| UNIPROTKB|E1BAN2 KATNAL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 189/324 (58%), Positives = 239/324 (73%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 212 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 271
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 272 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 331
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 332 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 391
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EAR AM LP+ + +L Y L
Sbjct: 392 VLAASNLPWELDCAMLRRLEKRILVDLPSQEAREAMIHHWLPAVSRSSALELRADLEYSL 451
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 470
L TEGYSGSDI+LV +EAAM+P+R++ LE Q + LP Q+ + D
Sbjct: 452 LSRETEGYSGSDIKLVCREAAMRPVRKIFNALENHQ--SGSSNLPGIQLDTVTTADFLDV 509
Query: 471 LKNTRPSAHLHAHRYEKFNADYGS 494
L +T+PSA RY + +++ S
Sbjct: 510 LAHTKPSAKSLTQRYAAWQSEFES 533
|
|
| UNIPROTKB|E1BZ64 KATNAL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 188/322 (58%), Positives = 239/322 (74%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL + E R LA + +DI +P+VKW+ I GL+ AKRL+KEAVV PI+
Sbjct: 144 SERLLKPLSAFIGMNGEMRELATVVSKDIYLHNPNVKWDDIIGLDAAKRLVKEAVVYPIR 203
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 204 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 263
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG + EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct: 264 RVLFELARYHAPSTIFLDELESVMSQRGTISGGEHEGSRRMKTELLVQMDGLARSDDLVF 323
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP--SQTG----EESLPYDL 412
VLAA+NLPWELD+AMLRRLEKRILV LP+ EAR+AM LP S +G L Y L
Sbjct: 324 VLAASNLPWELDSAMLRRLEKRILVDLPNQEARQAMIRHWLPPLSNSGGVELRTDLDYSL 383
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472
L T+GYSGSDI+LV KEAAM+P+R++ LE Q + + I D +
Sbjct: 384 LGRETDGYSGSDIKLVCKEAAMRPVRKVFDALENHQPGNSNLAAVHLDMITTADFLDVIA 443
Query: 473 NTRPSAHLHAHRYEKFNADYGS 494
+T+PSA + +Y + ++ S
Sbjct: 444 HTKPSAKKLSQKYTAWQREFES 465
|
|
| UNIPROTKB|J9PBP3 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 189/315 (60%), Positives = 236/315 (74%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 275
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 455
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 470
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 513
Query: 471 LKNTRPSAHLHAHRY 485
L +T+PSA RY
Sbjct: 514 LAHTKPSAKNLTQRY 528
|
|
| MGI|MGI:1924234 Katnal2 "katanin p60 subunit A-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 189/324 (58%), Positives = 241/324 (74%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + +L Y +
Sbjct: 397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 470
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + LP Q+ + +D
Sbjct: 457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514
Query: 471 LKNTRPSAHLHAHRY----EKFNA 490
L +T+PSA RY EKF +
Sbjct: 515 LAHTKPSAKNLTERYLAWQEKFES 538
|
|
| RGD|1564708 Katnal2 "katanin p60 subunit A-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 188/322 (58%), Positives = 239/322 (74%)
Query: 181 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 239
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 200 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 259
Query: 240 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 299
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 260 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 319
Query: 300 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 358
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 320 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 379
Query: 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 412
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + +L Y +
Sbjct: 380 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELRTQLEYSV 439
Query: 413 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + Q+ + ED L
Sbjct: 440 LSQETEGYSGSDIKLVCREAAMRPVRKIFNVLENHQSESSNLLGIQLDTVTTEDFLDVLA 499
Query: 473 NTRPSAHLHAHRY----EKFNA 490
+T+PSA RY EKF +
Sbjct: 500 HTKPSAKNLTERYLAWQEKFES 521
|
|
| ZFIN|ZDB-GENE-051113-156 katnal2 "katanin p60 subunit A-like 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 174/314 (55%), Positives = 218/314 (69%)
Query: 119 GRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVYEQ---YRTQFQGSGSTCLNGV 175
GR K + +T G LN + ++N ++ + + YR Q + N
Sbjct: 136 GRDFSKSSDGDRLTSADTL-GFGLNVSPIIRNGAEEGTHMRKIDYRNLIQDAVRGAANDT 194
Query: 176 LANVI---NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLK 231
L N ERL KP+ +++ + LA + RDI +P+V+W+ I GLE AKRL+K
Sbjct: 195 LHNADFTEQERLLKPVSALIGMNSDMKELAAVISRDIYLHNPNVRWDDIIGLEAAKRLVK 254
Query: 232 EAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291
EAVV PIKYP+ FTG+LSPWKG+LL+GPPGTGKTMLAKAVATEC TTFFNISASS+VSKW
Sbjct: 255 EAVVYPIKYPQLFTGILSPWKGLLLYGPPGTGKTMLAKAVATECNTTFFNISASSIVSKW 314
Query: 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGL 350
RGDSEKL++VLFELAR+HAPSTIFLDE+++++SQRG + +HE SRR+KTELL+QMDGL
Sbjct: 315 RGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGVGQGGDHEGSRRMKTELLVQMDGL 374
Query: 351 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP--SQTG---- 404
+S++LVFVLAA+NLPWELD AMLRRLEKRILV LP AR+AM LP S TG
Sbjct: 375 ARSNDLVFVLAASNLPWELDHAMLRRLEKRILVSLPSAPARQAMISHWLPPVSNTGGVEL 434
Query: 405 EESLPYDLLVERTE 418
L YD L + E
Sbjct: 435 RTELDYDSLAQVQE 448
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.3 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 498 | |||
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 1e-76 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 3e-66 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 5e-64 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 5e-60 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 7e-54 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 5e-53 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 6e-52 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 4e-50 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 1e-44 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 3e-43 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 1e-38 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 5e-37 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 3e-34 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 4e-32 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 5e-30 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 4e-29 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 5e-23 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-16 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 1e-11 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 3e-07 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 1e-05 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 3e-05 | |
| COG1224 | 450 | COG1224, TIP49, DNA helicase TIP49, TBP-interactin | 5e-05 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 8e-05 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 2e-04 | |
| TIGR02639 | 730 | TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi | 2e-04 | |
| pfam13479 | 201 | pfam13479, AAA_24, AAA domain | 2e-04 | |
| pfam01078 | 207 | pfam01078, Mg_chelatase, Magnesium chelatase, subu | 5e-04 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 7e-04 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 8e-04 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 8e-04 | |
| PRK11034 | 758 | PRK11034, clpA, ATP-dependent Clp protease ATP-bin | 0.001 | |
| COG0606 | 490 | COG0606, COG0606, Predicted ATPase with chaperone | 0.001 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.002 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 0.003 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 1e-76
Identities = 122/281 (43%), Positives = 169/281 (60%), Gaps = 30/281 (10%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 271
DV + I GLE AK LKEA+ P+K P+ F L L P KG+LL+GPPGTGKT+LAKAV
Sbjct: 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAV 296
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
A E ++ F ++ S ++SKW G+SEK I+ LFE AR APS IF+DEID++ S RG S
Sbjct: 297 ALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP--S 354
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 389
E + RR+ +LL ++DG+ +++ V V+AATN P +LD A+LR R ++ I VPLPD E
Sbjct: 355 EDGSGRRVVGQLLTELDGIEKAEG-VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413
Query: 390 ARRAMFESLLPSQ--TGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447
R +F+ L + E + + L E TEGYSG+DI + +EAA++ LR
Sbjct: 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALRE-------- 465
Query: 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 488
A E+ +D ALK +PS YE++
Sbjct: 466 ---ARRREVTL------DDFLDALKKIKPSV-----TYEEW 492
|
Length = 494 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 3e-66
Identities = 122/295 (41%), Positives = 173/295 (58%), Gaps = 6/295 (2%)
Query: 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 261
S R+++ P+V+W I GLE K+ L+EAV P+K+P+ F + + P KG+LLFGPPG
Sbjct: 438 SAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPG 497
Query: 262 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321
TGKT+LAKAVATE F + ++SKW G+SEK I+ +F AR AP+ IF DEIDA
Sbjct: 498 TGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDA 557
Query: 322 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEK 379
I RG AR + + R+ +LL +MDG+ + +V V+AATN P LD A+LR R ++
Sbjct: 558 IAPARG-ARFDTSVTDRIVNQLLTEMDGIQELSNVV-VIAATNRPDILDPALLRPGRFDR 615
Query: 380 RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
ILVP PD EAR+ +F+ S E + + L E TEGY+G+DI V +EAAM LR
Sbjct: 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675
Query: 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 493
+ + ++E + + ALK +PS + RYE+ +
Sbjct: 676 SIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELK 730
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 5e-64
Identities = 102/248 (41%), Positives = 148/248 (59%), Gaps = 13/248 (5%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 270
PDV +E I GL+ + ++E V +P+K P+ F L + P KG+LL+GPPGTGKT+LAKA
Sbjct: 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKA 204
Query: 271 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 330
VA + TF + S +V K+ G+ +L++ LFELAR APS IF+DEIDAI ++R ++
Sbjct: 205 VANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG 264
Query: 331 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 386
+ + E R + ELL Q+DG V V+ ATN P LD A+LR R +++I PLP
Sbjct: 265 TSGDREVQRTM-LELLNQLDGFDPRGN-VKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322
Query: 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 446
D E R + + + + +LL TEG+SG+D++ + EA M +R E
Sbjct: 323 DEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIR------ER 376
Query: 447 RQEVAPDD 454
R EV +D
Sbjct: 377 RDEVTMED 384
|
Length = 406 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (515), Expect = 5e-60
Identities = 104/248 (41%), Positives = 149/248 (60%), Gaps = 13/248 (5%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 270
SP+V +E I GLE R ++EAV +P+K P+ F + + P KG+LL+GPPGTGKT+LAKA
Sbjct: 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKA 184
Query: 271 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 330
VA E TF + S +V K+ G+ +L++ LFELAR APS IF+DEIDAI ++R ++
Sbjct: 185 VAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG 244
Query: 331 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 386
+ + E R L +LL +MDG V ++AATN LD A+LR R ++ I VPLP
Sbjct: 245 TSGDREVQRTL-MQLLAEMDGFDPRGN-VKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302
Query: 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 446
D E R + + + + + L E TEG SG+D++ + EA M +R +
Sbjct: 303 DEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR------DD 356
Query: 447 RQEVAPDD 454
R EV +D
Sbjct: 357 RTEVTMED 364
|
Length = 389 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 7e-54
Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 13/247 (5%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 271
P+V +E I GLE R ++EAV +P+K+P+ F + + P KG+LL+GPPGTGKT+LAKAV
Sbjct: 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
A E TF + S +V K+ G+ +L++ +FELA+ APS IF+DEIDAI ++R ++ +
Sbjct: 177 AHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT 236
Query: 332 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 387
+ E R L +LL ++DG V V+AATN P LD A+LR R ++ I VPLPD
Sbjct: 237 SGDREVQRTL-MQLLAELDGFDPRGN-VKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294
Query: 388 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447
E R + + E + + + + TEG SG+D++ + EA M +R E R
Sbjct: 295 FEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR------EER 348
Query: 448 QEVAPDD 454
V DD
Sbjct: 349 DYVTMDD 355
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 5e-53
Identities = 113/293 (38%), Positives = 171/293 (58%), Gaps = 13/293 (4%)
Query: 193 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPW 251
++ E + + +I R P V +E I GL+ AK ++E V +P+K+P+ F L + P
Sbjct: 153 EATEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPP 212
Query: 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 311
KG+LL+GPPGTGKT+LAKAVA E F +I+ ++SK+ G+SE+ ++ +F+ A +AP
Sbjct: 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAP 272
Query: 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371
S IF+DEIDAI +R E E E +R+ +LL MDGL V V+ ATN P LD
Sbjct: 273 SIIFIDEIDAIAPKREEVTGEVE--KRVVAQLLTLMDGLKGRGR-VIVIGATNRPDALDP 329
Query: 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 429
A+ R R ++ I++ +PD AR+ + + + E + D L E T G+ G+D+ ++
Sbjct: 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389
Query: 430 KEAAMQPLRRLMVLLEGR----QEVAPDDELPQIGPIRPEDVEIALKNTRPSA 478
KEAAM LRR + EG+ E P + L ++ + +D ALK PSA
Sbjct: 390 KEAAMAALRR--FIREGKINFEAEEIPAEVLKEL-KVTMKDFMEALKMVEPSA 439
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 6e-52
Identities = 68/133 (51%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 313
+LL+GPPGTGKT LAKAVA E F IS S +VSK+ G+SEK ++ LFE A+ AP
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60
Query: 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 373
IF+DEIDA+ RG SRR+ +LL ++DG T S V V+AATN P +LD A+
Sbjct: 61 IFIDEIDALAGSRG--SGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPAL 118
Query: 374 LR-RLEKRILVPL 385
LR R ++ I PL
Sbjct: 119 LRGRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 4e-50
Identities = 94/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 271
PDV + I GL+ K+ ++EAV +P+ P+ + + + P +G+LL+GPPGTGKTMLAKAV
Sbjct: 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAV 199
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
A TF + S V K+ G+ ++++ +F LAR +APS IF+DE+D+I ++R +A++
Sbjct: 200 AHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 259
Query: 332 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 387
+ E R L ELL QMDG Q+ V V+ ATN LD A+LR RL+++I PLPD
Sbjct: 260 GADREVQRIL-LELLNQMDGFDQTTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317
Query: 388 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
+R +F+++ E + + V R E S +DI + +EA MQ +R+
Sbjct: 318 RRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369
|
Length = 398 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-44
Identities = 91/233 (39%), Positives = 141/233 (60%), Gaps = 9/233 (3%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 270
+P + I GLE + +KEAV +P+ +P+ + + + P KG++L+GPPGTGKT+LAKA
Sbjct: 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKA 236
Query: 271 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 330
VA E TF + S ++ K+ GD KL++ LF +A +APS +F+DEIDAI ++R +A
Sbjct: 237 VANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT 296
Query: 331 S--EHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 385
S E E R + ELL Q+DG ++ D V V+ ATN LD A++R R++++I P
Sbjct: 297 SGGEKEIQRTM-LELLNQLDGFDSRGD--VKVIMATNRIESLDPALIRPGRIDRKIEFPN 353
Query: 386 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 438
PD + +R +FE T E + + + + SG+DI+ + EA + LR
Sbjct: 354 PDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406
|
Length = 438 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-43
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 16/254 (6%)
Query: 191 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLL 248
+F ++ + L E P V ++ + G++ AK L E +V +K P FT G
Sbjct: 36 SFGKSKAKLLNE--------EKPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAK 86
Query: 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH 308
P KG+LL GPPGTGKT+LAKAVA E FF+IS S V + G ++ LFE A+
Sbjct: 87 IP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK 145
Query: 309 HAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367
+AP IF+DEIDA+ QRG ++ + +LL++MDG + ++ V+AATN P
Sbjct: 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI-VIAATNRPD 204
Query: 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 425
LD A+LR R +++++V LPD + R + + ++ + + RT G+SG+D+
Sbjct: 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADL 264
Query: 426 RLVSKEAAMQPLRR 439
+ EAA+ R+
Sbjct: 265 ANLLNEAALLAARK 278
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 26/267 (9%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMP-IKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 271
D+ + + G E AKR K ++M ++ P+ F G +P K +L +GPPGTGKTM+AKA+
Sbjct: 116 SDITLDDVIGQEEAKR--KCRLIMEYLENPERF-GDWAP-KNVLFYGPPGTGKTMMAKAL 171
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
A E K + A+ ++ + GD + I L+E AR AP +F+DE+DAI R
Sbjct: 172 ANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL 231
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 391
+ S + LL ++DG+ +++ +V + AATN P LD A+ R E+ I LP+ E R
Sbjct: 232 RGDVSEIVNA-LLTELDGIKENEGVVTI-AATNRPELLDPAIRSRFEEEIEFKLPNDEER 289
Query: 392 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQP-LRRLMVLLEGRQEV 450
+ E L +T+G SG DI KE ++ L R + E R++V
Sbjct: 290 LEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI----KEKVLKTALHR--AIAEDREKV 343
Query: 451 APDDELPQIGPIRPEDVEIALKNTRPS 477
ED+E ALK R
Sbjct: 344 ------------EREDIEKALKKERKR 358
|
Length = 368 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 5e-37
Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 6/230 (2%)
Query: 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 272
+ + I G+E AK +E VV +K P+ FT + KG+LL GPPGTGKT+LAKA+A
Sbjct: 179 GITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIA 237
Query: 273 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RS 331
E + FF+IS S V + G ++ LF+ A+ ++P +F+DEIDA+ QRG
Sbjct: 238 GEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG 297
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 389
++ + +LL +MDG + ++ V+AATN LDAA+LR R +++I V LPD E
Sbjct: 298 GNDEREQTLNQLLTEMDGFKGNKGVI-VIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356
Query: 390 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
R + + ++ + +L+ RT G+SG+D+ + EAA+ RR
Sbjct: 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406
|
Length = 638 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-34
Identities = 89/228 (39%), Positives = 129/228 (56%), Gaps = 8/228 (3%)
Query: 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLA 268
V + + G++ AK L E +V +K PK + L P KG+LL GPPGTGKT+LA
Sbjct: 143 DQVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLA 200
Query: 269 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328
KAVA E FF+IS S V + G ++ LFE A+ +AP IF+DEIDA+ QRG
Sbjct: 201 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 260
Query: 329 AR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 385
++ + +LL++MDG + E V V+AATN P LD A+LR R +++ILV L
Sbjct: 261 GLGGGNDEREQTLNQLLVEMDGFGGN-EGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319
Query: 386 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 433
PD + R + + ++ E + + T G+SG+D+ + EAA
Sbjct: 320 PDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAA 367
|
Length = 596 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-32
Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 14/248 (5%)
Query: 191 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 250
+F ++ R L E D I+ + + + G + AK + E +V ++ P F L
Sbjct: 133 SFGKSKARMLTE----DQIKTT----FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGK 183
Query: 251 W-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 309
KG+L+ GPPGTGKT+LAKA+A E K FF IS S V + G ++ +FE A+
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA 243
Query: 310 APSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368
AP IF+DEIDA+ QRG H+ + ++L++MDG + +E + V+AATN P
Sbjct: 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDV 302
Query: 369 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 426
LD A+LR R +++++V LPD R + + + + ++ T G+SG+D+
Sbjct: 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 362
Query: 427 LVSKEAAM 434
+ EAA+
Sbjct: 363 NLVNEAAL 370
|
Length = 644 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-30
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 29/232 (12%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 271
PDV + I GL + +++AV +P +P+ + L P KG+LL+GPPG GKT++AKAV
Sbjct: 177 PDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAV 236
Query: 272 ATEC----------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA----PSTIFLD 317
A K+ F NI +++K+ G++E+ I+++F+ AR A P +F D
Sbjct: 237 ANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFD 296
Query: 318 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-- 375
E+D++ RG S + + +LL ++DG+ D V V+ A+N +D A+LR
Sbjct: 297 EMDSLFRTRGSGVSS-DVETTVVPQLLAEIDGVESLDN-VIVIGASNREDMIDPAILRPG 354
Query: 376 RLEKRILVPLPDTEARRAMF----------ESLLPSQTGEESLPYDLLVERT 417
RL+ +I + PD EA +F L + G+ L++R
Sbjct: 355 RLDVKIRIERPDAEAAADIFAKYLTDDLPLPEDLAAHDGDREATAAALIQRV 406
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-29
Identities = 93/243 (38%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 236 MPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 294
+P+K P+ F L + P KG+LL GPPGTGKT+LA+A+A F +I+ ++SK+ G+
Sbjct: 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALA-NEGAEFLSINGPEILSKYVGE 60
Query: 295 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354
SE ++ LFE A APS IF+DEIDA+ +R + E E RR+ +LL MDGL +
Sbjct: 61 SELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVE--RRVVAQLLALMDGLKRGQ 118
Query: 355 ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARR------AMFESLLPSQTGEE 406
+V ATN P LD A R R ++ I V LPD R L P TG+
Sbjct: 119 VIVI--GATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKT 176
Query: 407 SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 466
L RT G SG+D+ ++KEAA++ LRR + L+ V DD + + P
Sbjct: 177 ------LAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSR 230
Query: 467 VEI 469
+
Sbjct: 231 GVL 233
|
Length = 494 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 5e-23
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 36/176 (20%)
Query: 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KT 277
G E A L+EA+ L P K +LL+GPPGTGKT LA+A+A E
Sbjct: 1 VGQEEAIEALREAL------------ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGA 48
Query: 278 TFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHE 334
F ++AS ++ L+++LFELA P +F+DEID++
Sbjct: 49 PFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL------------ 96
Query: 335 ASRRLKTELLIQMDGL---TQSDELVFVLAATNLPWELDAAM--LRRLEKRILVPL 385
SR + LL ++ L E V V+ ATN P D RL+ RI++PL
Sbjct: 97 -SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 9e-16
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 250 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISAS--------------SVVSKWR 292
P + IL+ GPPG+GKT LA+A+A E I K
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 293 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 352
G E +++ LAR P + LDEI +++ EA L +++ L +
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA--------LLLLLEELRLLLLLK 112
Query: 353 SDELVFVLAATNLP-WELDAAMLRRLEKRILVPLPD 387
S++ + V+ TN A + RR ++RI++ L
Sbjct: 113 SEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 212 SPDVKWESIKGLENAKRLLKE-AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 270
S + K I GL+N K LK+ + + Y GL +P +G+LL G GTGK++ AKA
Sbjct: 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQASNY--GLPTP-RGLLLVGIQGTGKSLTAKA 278
Query: 271 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 330
+A + + + + G+SE ++ + +A +P +++DEID S E++
Sbjct: 279 IANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNS-ESK 337
Query: 331 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN----LPWELDAAMLR--RLEKRILVP 384
+ + R+ + L++ VFV+A N LP E +LR R ++ +
Sbjct: 338 GDSGTTNRVLATFITW---LSEKKSPVFVVATANNIDLLPLE----ILRKGRFDEIFFLD 390
Query: 385 LPDTEARRAMFESLL----PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 432
LP E R +F+ L P + L + + +SG++I EA
Sbjct: 391 LPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFSGAEIEQSIIEA 440
|
Length = 489 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-07
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPS- 312
++L+GPPGTGKT LA+ +A F +SA + K ++ + E AR +
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAG 91
Query: 313 --TI-FLDEI 319
TI F+DEI
Sbjct: 92 RRTILFIDEI 101
|
Length = 413 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 254 ILLFGPPGTGKTMLAKAVA-----TECKTTFFNISA---SSVVSKWRGDSEKLIKV---- 301
L GP G GKT LAKA+A E ++S VS+ G +
Sbjct: 6 FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG 65
Query: 302 -LFELARHHAPSTIFLDEIDAI 322
L E R S + +DEI+
Sbjct: 66 QLTEAVRRKPYSIVLIDEIEKA 87
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 45/178 (25%), Positives = 64/178 (35%), Gaps = 31/178 (17%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNIS------ASSVVSKWRGDSEKLIKVLFELAR 307
+LL GPPG GKT+LA+A+A F I S ++ + + L F
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105
Query: 308 ----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSD--ELVF 358
+ LDEI+ A E + + L L + + GLT
Sbjct: 106 GPLFAAVRVILLLDEIN-------RAPPEVQNA--LLEALEERQVTVPGLTTIRLPPPFI 156
Query: 359 VLAATNLPW-----ELDAAMLRRLEKRILV--PLPDTEARRAMFESLLPSQTGEESLP 409
V+A N L A+L R RI V P + E R + + ESL
Sbjct: 157 VIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLV 214
|
Length = 329 |
| >gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 252 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVL 302
+GIL+ GPPGTGKT LA +A E F IS S + S +E L + L
Sbjct: 66 RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118
|
Length = 450 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 256 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH---HAPS 312
L+GPPGTGKT LA+ +A F +SA + K ++ + E AR
Sbjct: 53 LWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRR 105
Query: 313 TI-FLDEI 319
TI FLDEI
Sbjct: 106 TILFLDEI 113
|
Length = 436 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 252 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVS 289
+ +L+ GPPGTGKT LA A++ E T F IS S V S
Sbjct: 51 RAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYS 90
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
| >gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 255 LLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVV--SKWRGDSEKLIK-V 301
LL G PG GKT + + +A +++ +++ +K+RGD E+ +K V
Sbjct: 206 LLVGEPGVGKTAIVEGLALRIAEGKVPERLKNAKIYSLDMGTLLAGTKYRGDFEERLKAV 265
Query: 302 LFELARHHAPSTI-FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360
+ E+ + P+ I F+DEI I+ + +AS LK L S ++ +
Sbjct: 266 VSEIEKE--PNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--------SSGKIRCIG 315
Query: 361 AAT----NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401
+ T +E D A+ RR +K I V P E + + L
Sbjct: 316 STTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEQ 359
|
[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730 |
| >gnl|CDD|222163 pfam13479, AAA_24, AAA domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS------EKLIKVL 302
K +L++GPPG GKT LAK KT F ++ A + RGD+ + L L
Sbjct: 2 KNIK-VLIYGPPGIGKTSLAKT-LPP-KTLFLDLDAGTTKVLSRGDNVDIRSWQDLRDFL 58
Query: 303 FELARHHAP-STIFLDEIDAI-------ISQRGEARSEHE 334
ELA A T+ +D I + I ++ + +SE
Sbjct: 59 DELAEDLAEYDTLVIDTITKLERLCLAWIKKQNKKKSERT 98
|
This AAA domain is found in a wide variety of presumed phage proteins. Length = 201 |
| >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 20/57 (35%)
Query: 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG---ILLFGPPGTGKTMLAKAVAT 273
+KG E AKR L+ A G +L+ GPPG+GKTMLAK +
Sbjct: 5 VKGQEQAKRALEIAAA-----------------GGHNLLMIGPPGSGKTMLAKRLPG 44
|
Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 7e-04
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 313
+LL+GPPG GKT LA +A E S + K GD L +L L
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSG-PALEK-PGD---LAAILTNLEEG---DV 105
Query: 314 IFLDEI 319
+F+DEI
Sbjct: 106 LFIDEI 111
|
Length = 328 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 222 GLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-C-- 275
GLE KR LK + M + + + +L GPPGTGKT +A+ VA C
Sbjct: 280 GLERVKRQVAALKSSTAMALARAERGLPVAQTSNHMLFAGPPGTGKTTIARVVAKIYCGL 339
Query: 276 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
K +S + ++ ++ G+SE + + A +FLDE ++ +
Sbjct: 340 GVLRKPLVREVSRADLIGQYIGESEAKTNEIIDSALGGV---LFLDEAYTLVETGYGQKD 396
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLA 361
LL +M+ D LV + A
Sbjct: 397 PFGLE--AIDTLLARME--NDRDRLVVIGA 422
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 313
+LLFGPPG GKT LA +A E S ++ GD L +L L
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 106
Query: 314 IFLDEIDAI 322
+F+DEI +
Sbjct: 107 LFIDEIHRL 115
|
Length = 332 |
| >gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 255 LLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSEKLIKVL 302
LL G G GKT +A+ +A +C +I + +K+RGD EK K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 303 FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL---LIQMDGLTQSDELVFV 359
+ S +F+DEI II + + +A+ +K L I++ G T E
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF--- 327
Query: 360 LAATNLPWELDAAMLRRLEK-RILVPLPD 387
+N+ +E D A+ RR +K I P +
Sbjct: 328 ---SNI-FEKDRALARRFQKIDITEPSIE 352
|
Length = 758 |
| >gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 14/50 (28%)
Query: 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 269
+KG E AKR L+ A G +LL GPPGTGKTMLA
Sbjct: 181 VKGQEQAKRALEIAA----------AG----GHNLLLVGPPGTGKTMLAS 216
|
Length = 490 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 27/125 (21%)
Query: 190 PNFDSAE-TRALAESLCRDII---RGSPDVKWE--SIKGLENAKRLLKEAVVMPIKY--- 240
F++ + + + D I V ++ S G+ +K
Sbjct: 1 EEFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTR 60
Query: 241 ----------PKYFT------GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284
K F GL+ P + ++ G PG+G + L K +A T F+I
Sbjct: 61 GFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIA--SNTDGFHIGV 118
Query: 285 SSVVS 289
V++
Sbjct: 119 EGVIT 123
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 313
+LL+GPPG GKT LA +A E S ++ GD L +L L
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 84
Query: 314 IFLDEIDAI 322
+F+DEI +
Sbjct: 85 LFIDEIHRL 93
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 100.0 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.98 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.97 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.97 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.97 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.97 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.97 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.96 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.96 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.96 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.96 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.95 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.9 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.87 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.87 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.86 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.85 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.85 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.85 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.83 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.82 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.82 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.78 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.76 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.75 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.74 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.74 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.74 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.74 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.74 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.71 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.71 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.7 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.69 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.68 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.68 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.67 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.66 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.66 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.66 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.64 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.63 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.63 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.62 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.62 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.62 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.62 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.62 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.61 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.61 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.61 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.61 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.6 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.6 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.6 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.6 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.6 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.6 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.6 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.59 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.59 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.58 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.58 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 99.57 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.57 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.57 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.57 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.56 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.56 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.56 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.56 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.56 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.55 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.55 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.55 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.55 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.54 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.54 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.54 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.53 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.53 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.52 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.52 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.52 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.52 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.52 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.52 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.51 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.51 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.51 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.5 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.49 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.49 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.49 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.49 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.49 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.48 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.48 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.47 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.47 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.46 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.46 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.46 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.46 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.44 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.43 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.43 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.42 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.42 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.41 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.41 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.4 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.38 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.37 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 99.35 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.34 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.34 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.34 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.33 | |
| PHA02244 | 383 | ATPase-like protein | 99.32 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.32 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.31 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.31 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.31 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.3 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.3 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.3 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.29 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.29 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.29 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.28 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.28 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.28 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.27 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.25 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.24 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.23 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.21 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.2 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.19 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.18 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.18 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.18 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.17 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.16 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.16 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.14 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.14 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.14 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 99.12 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.1 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.09 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.09 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 99.08 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 99.08 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.07 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.06 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 99.05 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 99.02 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 99.0 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.99 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.99 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.99 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 98.99 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 98.98 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.98 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.96 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.95 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.94 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 98.94 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.93 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.93 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.92 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.91 | |
| PRK08181 | 269 | transposase; Validated | 98.91 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.91 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.9 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.89 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.88 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.88 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.88 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.87 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.84 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 98.82 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.82 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 98.75 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.71 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.68 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.68 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.67 | |
| PRK06526 | 254 | transposase; Provisional | 98.67 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.65 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.61 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.6 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.58 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.57 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.56 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.55 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.51 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.47 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.47 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.41 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.4 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.37 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.35 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 98.35 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 98.34 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.33 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 98.32 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 98.31 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 98.29 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.24 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 98.21 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 98.2 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 98.2 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 98.17 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 98.15 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.12 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.11 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.11 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 98.1 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 98.05 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 98.01 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 97.99 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 97.98 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.98 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 97.95 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 97.88 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.83 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.82 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.79 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.78 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 97.74 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.73 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 97.71 | |
| PF09336 | 62 | Vps4_C: Vps4 C terminal oligomerisation domain; In | 97.7 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.68 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.67 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.66 | |
| PHA02624 | 647 | large T antigen; Provisional | 97.65 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.65 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.64 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 97.64 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.6 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 97.57 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.56 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 97.56 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 97.55 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 97.53 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.53 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.52 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.51 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 97.51 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 97.5 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.49 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 97.49 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 97.48 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.47 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 97.47 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 97.45 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 97.44 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 97.44 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 97.43 | |
| PHA02774 | 613 | E1; Provisional | 97.43 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.4 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.4 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.39 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 97.39 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.37 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 97.37 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 97.34 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 97.34 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.31 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.31 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 97.29 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.28 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.24 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.23 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 97.23 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.21 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.21 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 97.21 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.2 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 97.18 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 97.18 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.18 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.17 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.16 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 97.15 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 97.15 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.14 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 97.13 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 97.12 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.11 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.11 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.1 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.1 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.09 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.08 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.06 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.06 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 97.06 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.05 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 97.04 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.04 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 97.04 | |
| KOG2383 | 467 | consensus Predicted ATPase [General function predi | 97.02 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 97.01 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 96.99 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 96.99 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 96.99 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.99 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 96.98 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 96.98 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 96.98 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 96.97 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 96.96 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 96.96 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.96 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 96.96 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 96.95 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 96.95 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 96.94 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 96.94 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 96.94 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 96.94 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 96.93 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 96.93 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 96.93 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 96.92 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 96.92 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 96.92 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 96.91 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 96.91 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 96.91 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.89 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 96.89 | |
| TIGR01613 | 304 | primase_Cterm phage/plasmid primase, P4 family, C- | 96.88 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 96.87 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 96.87 | |
| PF13479 | 213 | AAA_24: AAA domain | 96.87 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.86 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 96.85 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.85 | |
| PRK03731 | 171 | aroL shikimate kinase II; Reviewed | 96.83 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 96.83 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 96.83 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.82 | |
| PRK13946 | 184 | shikimate kinase; Provisional | 96.81 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 96.81 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 96.8 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 96.79 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 96.79 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 96.79 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 96.76 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 96.75 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 96.75 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 96.75 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 96.74 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 96.73 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.73 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.72 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 96.71 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.71 | |
| PRK06696 | 223 | uridine kinase; Validated | 96.71 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.71 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.7 | |
| PLN02200 | 234 | adenylate kinase family protein | 96.7 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 96.68 | |
| PRK08154 | 309 | anaerobic benzoate catabolism transcriptional regu | 96.68 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.68 | |
| PLN02674 | 244 | adenylate kinase | 96.66 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 96.66 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 96.65 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 96.65 | |
| PRK13764 | 602 | ATPase; Provisional | 96.64 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 96.64 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 96.64 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 96.62 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 96.61 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 96.61 | |
| COG0324 | 308 | MiaA tRNA delta(2)-isopentenylpyrophosphate transf | 96.61 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.6 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 96.6 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 96.6 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 96.59 | |
| PF08303 | 168 | tRNA_lig_kinase: tRNA ligase kinase domain; InterP | 96.59 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 96.58 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.57 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 96.57 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 96.57 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.56 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 96.55 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 96.55 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 96.54 | |
| PF06414 | 199 | Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e | 96.54 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.54 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 96.54 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.54 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.53 | |
| COG5245 | 3164 | DYN1 Dynein, heavy chain [Cytoskeleton] | 96.52 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 96.52 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 96.51 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 96.51 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 96.5 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 96.5 | |
| TIGR02239 | 316 | recomb_RAD51 DNA repair protein RAD51. This eukary | 96.5 | |
| TIGR01526 | 325 | nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr | 96.5 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 96.49 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.49 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 96.48 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 96.48 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 96.47 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.46 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 96.46 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 96.45 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 96.45 | |
| PRK04182 | 180 | cytidylate kinase; Provisional | 96.44 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 96.44 | |
| PRK01184 | 184 | hypothetical protein; Provisional | 96.41 | |
| TIGR02173 | 171 | cyt_kin_arch cytidylate kinase, putative. Proteins | 96.41 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.41 | |
| PRK08099 | 399 | bifunctional DNA-binding transcriptional repressor | 96.4 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.4 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 96.39 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 96.38 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.38 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.37 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 96.36 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 96.35 | |
| TIGR00174 | 287 | miaA tRNA isopentenyltransferase (miaA). Catalyzes | 96.34 | |
| PLN02840 | 421 | tRNA dimethylallyltransferase | 96.33 | |
| PRK14529 | 223 | adenylate kinase; Provisional | 96.33 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.32 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.32 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.31 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [I | 96.3 | |
| PRK00091 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 96.3 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 96.29 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 96.29 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 96.29 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 96.24 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.24 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.24 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 96.24 | |
| PRK14526 | 211 | adenylate kinase; Provisional | 96.24 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 96.23 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 96.22 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 96.2 | |
| PLN02165 | 334 | adenylate isopentenyltransferase | 96.19 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 96.17 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.17 | |
| KOG3928 | 461 | consensus Mitochondrial ribosome small subunit com | 96.17 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 96.13 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 96.12 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 96.1 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 96.09 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 96.09 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 96.08 |
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=444.19 Aligned_cols=306 Identities=54% Similarity=0.884 Sum_probs=284.1
Q ss_pred CCCCcchHHHH-HHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHH
Q 010888 188 LLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 266 (498)
Q Consensus 188 ~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~ 266 (498)
..+.|...+.. .+.+.+.+++..+.|+++|+||.|+.++|+-|++++..|+..|++|.++..|+++||++||||||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 45666666655 67788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 267 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 267 lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
||+|+|.+++..|+.|+.+.+.++|.|++++.++-+|+.|+.++|++|||||||+|+..|+.. .+|+.++++.++||.+
T Consensus 261 LAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 261 LAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQ 339 (491)
T ss_pred HHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988764 7899999999999999
Q ss_pred hhCCccCCCc---EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHH
Q 010888 347 MDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 423 (498)
Q Consensus 347 ld~~~~~~~~---viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~ 423 (498)
|||....... |+|+|+||.||++|++++|||.+.|++|+|+.+.|..+++..++......+++++.|++.++||||+
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH
Confidence 9999766555 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh-hhHHHHHHHHHHhchh
Q 010888 424 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 495 (498)
Q Consensus 424 dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~-~~~~~~~~~~~~~g~~ 495 (498)
||.++|++|.+.++||..+.+.............. .|++++||+.|+++++||++ .++.+|++|.++|||.
T Consensus 420 DI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998887766555444444444 67999999999999999998 7899999999999984
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=402.24 Aligned_cols=270 Identities=43% Similarity=0.668 Sum_probs=250.8
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..|+...+.|+++|+||.|++++|++|++.+.+|+++++.|.+. ..|+++||||||||||||++|+++|++++.+|+.
T Consensus 419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 344666677899999999999999999999999999999999987 6999999999999999999999999999999999
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
|++.++.++|+|++++.++.+|++|+..+|||||+||||++...|++... .+..+++++||++|||+... .+|+||+
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~-k~V~ViA 575 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEAL-KNVLVIA 575 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHccccccc-CcEEEEe
Confidence 99999999999999999999999999999999999999999999974333 78899999999999999765 4599999
Q ss_pred EeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 362 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 362 aTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
+||+|+.+|++++| ||++.+++|+||.+.|.+||+.++++.+...++++++||+.|+||||+||..+|++|+..++++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHH
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 491 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~ 491 (498)
..+. ..|+.+||++|++..+++.+. ++..|++|.+.
T Consensus 656 ~i~a----------------~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 656 SIEA----------------TEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred hccc----------------ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 5541 129999999999999999876 57999998764
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=370.04 Aligned_cols=249 Identities=40% Similarity=0.650 Sum_probs=229.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+.|++++++|.|+++.++++++.+..|+++|+.|... ..||++||||||||||||+||||+|++.+..|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 346799999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
..+|.|++.+.++.+|..|+.++||||||||||+++.+|.+.. +.....++..-+||.+|||+...+ +|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCCc
Confidence 9999999999999999999999999999999999999886543 233345667778999999997654 59999999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||||++| ||++.|+||+|+.+.|.+||+.+.+++....+++++.||+.++|+||+||+++|.+|.+.|+|+-.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R--- 377 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR--- 377 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999622
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
. .+|++||.+|..++..
T Consensus 378 ---~------------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ---D------------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred ---C------------eecHHHHHHHHHHHHh
Confidence 1 2999999999988644
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=361.71 Aligned_cols=297 Identities=48% Similarity=0.835 Sum_probs=264.8
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 196 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 196 e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+..+++..+...+..+.|+++|+|+.|++.+|+.|++.+.+|++.|.+|.+...|++++||||||||||+.||+++|.+.
T Consensus 111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 34455566777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 276 ~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+..|+.|+.++++++|.|++++.++.+|+.|+.+.|+||||||||++++.|.++ +++.++++..+|+.+|+|+-..+.
T Consensus 191 nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 191 NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCC
Confidence 999999999999999999999999999999999999999999999999987754 567789999999999999988888
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~ 434 (498)
.|+|+++||-||.||.+++|||+..|++|+|+...|..+++.++...+.. .+.|+.+|+++|+||+|+||.-+++.|.+
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 89999999999999999999999999999999999999999999887765 46789999999999999999999999999
Q ss_pred HHHHHHHHHhhc--h---------hc-c---CCC--------------CCCCCCCCCCHHHHHHHHhccCCChhh-hHHH
Q 010888 435 QPLRRLMVLLEG--R---------QE-V---APD--------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHR 484 (498)
Q Consensus 435 ~a~rrl~~~le~--~---------~~-~---~~~--------------~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~ 484 (498)
..+|+......- . .. + .++ +.+ -..++|+.||..+|...+|...+ ++.+
T Consensus 349 ePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~k 427 (439)
T KOG0739|consen 349 EPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLLK 427 (439)
T ss_pred hhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHHH
Confidence 999987652210 0 00 0 011 111 13579999999999999999875 6999
Q ss_pred HHHHHHHhchh
Q 010888 485 YEKFNADYGSE 495 (498)
Q Consensus 485 ~~~~~~~~g~~ 495 (498)
.++|.++||+|
T Consensus 428 ~~~Ft~dFGqE 438 (439)
T KOG0739|consen 428 HEKFTEDFGQE 438 (439)
T ss_pred HHHHHHhhccC
Confidence 99999999987
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=386.51 Aligned_cols=287 Identities=33% Similarity=0.579 Sum_probs=255.6
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..|+.....|+++|+||.|+++++.+|..++.+|.++|+.|..+ ...+.+||||||||||||+||+|+|++.+..|+.
T Consensus 496 SakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 496 SAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred chhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 344666667899999999999999999999999999999999986 7778999999999999999999999999999999
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
|.+.++..+|+|++++.++.+|..|+...|||||+||+|+|.+.|+... ...+.+++++||.+|||+..+.+ |.||+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V~via 652 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-VYVIA 652 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-eEEEe
Confidence 9999999999999999999999999999999999999999999988654 55678999999999999976654 99999
Q ss_pred EeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcC--CCCCCCCCCHHHHHHHhc--CCcHHHHHHHHHHHHhH
Q 010888 362 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 362 aTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~--~~~~~~~~~l~~La~~t~--g~s~~dL~~L~~~A~~~ 435 (498)
+||+|+.+||+++| ||+..+++++|+.++|.+||+.+.+ +.++..++++++||+.+. ||||+||..||++|...
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASIL 732 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999 677788999999999876 99999999999999999
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhch
Q 010888 436 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 494 (498)
Q Consensus 436 a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~ 494 (498)
++++.+...+....-..-.. ....++..||++|+++++||.++ +...|+..++.+|.
T Consensus 733 AL~~~~~~~~~~~~~~~~~~--~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 733 ALRESLFEIDSSEDDVTVRS--STIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred HHHHHHhhccccCcccceee--eeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence 99987764443222111000 02238899999999999999886 57999999999883
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=388.60 Aligned_cols=283 Identities=32% Similarity=0.547 Sum_probs=259.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
...|+++|+||.|++++|.++.+.+..|++++++|.....+..|||||||||||||++|||+|.++...|+.|.+.++..
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 35799999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEEEEEeCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPWE 368 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIaaTn~p~~ 368 (498)
.|+|+++++++.+|++|+..+|||||+||+|+++|.|+..+..+.+..+++++|+.++|++.+ ....|+||+|||+|+.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 999999999999999999999999999999999999999888899999999999999999976 6778999999999999
Q ss_pred CCHHHHh--cccceeEecCC-CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc-CCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 369 LDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERTE-GYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 369 Ld~al~~--Rf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~-g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
|||+++| ||++-+++.++ |.+.+..+|+...++..++.++++.++|+++. .|||+|+..+|..||..|++|..+.+
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999998 66779999999999999999999999999975 69999999999999999999988877
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 493 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g 493 (498)
+......... .+...-++++||.+++++++||.+. |+.+|+.....|.
T Consensus 904 e~g~~~~~e~-~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 904 ESGTISEEEQ-ESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhcccccccc-CCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 7553222222 2233349999999999999999875 6899998887763
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=339.76 Aligned_cols=298 Identities=30% Similarity=0.431 Sum_probs=252.3
Q ss_pred CCChhhHHHHhhhhcCCCcccchhHHHHHHHHhhcCCCCCCcchHH-------------HHHHHHHhhhhhh-cCCCCCC
Q 010888 151 TSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAE-------------TRALAESLCRDII-RGSPDVK 216 (498)
Q Consensus 151 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-------------~~~~~~~~~~~~~-~~~~~~~ 216 (498)
..++.+|+.|+|+||.+.....+.+++| .++.|++.+-- +..+.++-.++.. ...++.+
T Consensus 47 ~dn~~~F~~YArdQW~Ge~v~eg~ylFD-------~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~~~~e~~~~it 119 (368)
T COG1223 47 DDNPEVFNIYARDQWLGEVVREGDYLFD-------TRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREIISDIT 119 (368)
T ss_pred cCCHHHHHHHHHHhhcceeeecCceEee-------cccccccceeEEEEeCCCCceecceEEEEecCcchhhhhhhcccc
Confidence 3489999999999999999999988763 34555555410 0000111112222 2347899
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcH
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE 296 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~ 296 (498)
|+|++|++++|+.++- +...+..|+.|..+. |++||+|||||||||++|+++|++.+.|++.+++.++.+.++|+..
T Consensus 120 ~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdga 196 (368)
T COG1223 120 LDDVIGQEEAKRKCRL-IMEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGA 196 (368)
T ss_pred HhhhhchHHHHHHHHH-HHHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHH
Confidence 9999999999999986 455688899988764 3799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhc
Q 010888 297 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRR 376 (498)
Q Consensus 297 ~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~R 376 (498)
+.++.+++.|+..+|||+||||+|+++.+|..+...++++. +++.||+.|||+.. +..|+.|++||+|+.||+++++|
T Consensus 197 r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsE-iVNALLTelDgi~e-neGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 197 RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSE-IVNALLTELDGIKE-NEGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHH-HHHHHHHhccCccc-CCceEEEeecCChhhcCHHHHhh
Confidence 99999999999999999999999999999988777666654 78999999999984 45589999999999999999999
Q ss_pred ccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH-HHHHHHhHHHHHHHHHhhchhccCCCCC
Q 010888 377 LEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQEVAPDDE 455 (498)
Q Consensus 377 f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~-L~~~A~~~a~rrl~~~le~~~~~~~~~~ 455 (498)
|...|+|.+|+.++|..|++.+++..++..+.+++.+++++.|+||+||.. +++.|.+.|+++ .+.
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e------d~e------- 341 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE------DRE------- 341 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh------chh-------
Confidence 999999999999999999999999999999999999999999999999976 788888887764 221
Q ss_pred CCCCCCCCHHHHHHHHhccCCCh
Q 010888 456 LPQIGPIRPEDVEIALKNTRPSA 478 (498)
Q Consensus 456 ~~~~~~It~eD~~~AL~~~~ps~ 478 (498)
.|+.+||+.|+++.+++-
T Consensus 342 -----~v~~edie~al~k~r~~r 359 (368)
T COG1223 342 -----KVEREDIEKALKKERKRR 359 (368)
T ss_pred -----hhhHHHHHHHHHhhcccc
Confidence 289999999999866653
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=345.26 Aligned_cols=282 Identities=40% Similarity=0.699 Sum_probs=252.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
..-.++|+||.|++.+++++++.+..|+++|++|.. +..|+++|||+||||||||++|+++|++.|.+|+.|+.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 345688999999999999999999999999999954 388999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC-cEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-LVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-~viVIaaTn~p~ 367 (498)
++|.|++++.++.+|..|....|+||||||+|.+...| ...+|+..+.+.++|+..+||+..+.. .|+|++|||+|.
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999998 366899999999999999999965544 799999999999
Q ss_pred CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh---
Q 010888 368 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL--- 444 (498)
Q Consensus 368 ~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l--- 444 (498)
+||.+++||+...+++++|+.++|..||+.+++......++|+.++|..|.||||+||.++|+.|+..++|+++..-
T Consensus 243 DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 243 DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -hchhccCCCCCC------CCCCCCCHHHHHHHHhccCCChhh---hHHHHHHHHHHhch
Q 010888 445 -EGRQEVAPDDEL------PQIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGS 494 (498)
Q Consensus 445 -e~~~~~~~~~~~------~~~~~It~eD~~~AL~~~~ps~~~---~~~~~~~~~~~~g~ 494 (498)
+......+.... -..+|++++||..++..+-++... .....+.|++.||+
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 111111111111 125889999999999999888543 37899999999986
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=356.76 Aligned_cols=281 Identities=36% Similarity=0.542 Sum_probs=247.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.++++|.+|.|++....+|.+.+.. +++|+.|..+ +.|+++||||||||||||+||+++|++++.||+.+++.++.+.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3578899999999999999998877 8899988776 8999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC---CCcEEEEEEeCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLPW 367 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~viVIaaTn~p~ 367 (498)
+.|++++.++.+|+.|...+|||+||||||++.++|... ..+..++++.+|+..||++... +.+|+||+|||+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999999863 4556799999999999998654 56799999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.||++|+| ||++.|.+..|+..+|.+||+.+++...+..+.++..||+.|.||.|+||.+||.+|+.-+++|.++..+
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999887444
Q ss_pred chhccCC---C-------------------------------------C----CCCCCCCCCHHHHHHHHhccCCChhhh
Q 010888 446 GRQEVAP---D-------------------------------------D----ELPQIGPIRPEDVEIALKNTRPSAHLH 481 (498)
Q Consensus 446 ~~~~~~~---~-------------------------------------~----~~~~~~~It~eD~~~AL~~~~ps~~~~ 481 (498)
.-...++ + + .....-.|+.+||+.|+..++||+..+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 2000000 0 0 001122488999999999999999877
Q ss_pred ---HHHHHHHHHHhchh
Q 010888 482 ---AHRYEKFNADYGSE 495 (498)
Q Consensus 482 ---~~~~~~~~~~~g~~ 495 (498)
-.+-..|.+..+.+
T Consensus 501 GF~tVPdVtW~dIGaL~ 517 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALE 517 (802)
T ss_pred cceecCCCChhhcccHH
Confidence 26677788777654
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=335.80 Aligned_cols=240 Identities=35% Similarity=0.569 Sum_probs=219.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
.+++|+|+.|++++|++|.+++ .+++.|+.|.++ ..-|++|||.||||||||+||||+|.+.+.||++.+++++...+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 4688999999999999999965 567888888876 77889999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
+|...+.++.+|..|+..+||||||||+|++..+|...... ..++.+++||.+|||+..+. .|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~--y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH--YAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH--HHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhhhH
Confidence 99999999999999999999999999999999998765443 67899999999999997654 5999999999999999
Q ss_pred HHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 372 al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
++.| ||++++.+|.||..-|.+||+.++.+.....++|+.-||+-|.||+|+||.+|++.|+..|... ++.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------ga~- 527 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------GAE- 527 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc------Ccc-
Confidence 9999 9999999999999999999999999999999999999999999999999999999999887642 222
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
.++|.|++.|=.++
T Consensus 528 -----------~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 528 -----------MVTMKHLEFAKDRI 541 (752)
T ss_pred -----------cccHHHHhhhhhhe
Confidence 28999998887664
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=356.03 Aligned_cols=287 Identities=41% Similarity=0.655 Sum_probs=248.6
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
++.....|.++|++|+|++.+|+.|++.+.+++.+++.+... ..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 441 ~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 441 REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 334445688999999999999999999999999999988875 6788999999999999999999999999999999999
Q ss_pred cccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC
Q 010888 285 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 364 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn 364 (498)
+++.++|+|++++.++.+|..|+...|+||||||+|.+++.++... .....++++++|+..|+++... .+++||+|||
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn 598 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATN 598 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeCC
Confidence 9999999999999999999999999999999999999998876432 2345678999999999998654 4599999999
Q ss_pred CCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 365 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 365 ~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
+|+.+|++++| ||+..+++++|+.++|.+||+.+.++.+...+.+++.+|+.+.||||+||..+|++|+..++++...
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 9999999999999999999999999888888899999999999999999999999999999998654
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhch
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 494 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~ 494 (498)
..................+|+++||.+|+++++||.++ ++..|++|.+.||.
T Consensus 679 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 679 SPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 32211000000001122469999999999999999886 57999999999974
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=329.94 Aligned_cols=286 Identities=52% Similarity=0.822 Sum_probs=256.6
Q ss_pred HHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 201 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
...+.+++....+++.|+++.|++.+|+.+.+.+.+|+.++..|.+...+.+++||.||||||||+|+++||.|++..|+
T Consensus 136 ~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff 215 (428)
T KOG0740|consen 136 IEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFF 215 (428)
T ss_pred hHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEe
Confidence 34456777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEE
Q 010888 281 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 359 (498)
Q Consensus 281 ~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viV 359 (498)
.++++.+.++|+|++++.++.+|..|+..+|+|+||||+|.++.+|. ...++.++++..+++..+++... .+.+|+|
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999984 44667788999999999888744 4458999
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~r 438 (498)
|+|||.|+.+|.++++||...+++|+|+.+.|..+|..++.+.+.. .+.+++.+++.|+||+++||..+|++|++...|
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 9999999999999999999999999999999999999999887443 457899999999999999999999999999998
Q ss_pred HHHHH--hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 439 RLMVL--LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 439 rl~~~--le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
.+... ++. + .....++++..||+.+++..+|+++. .+..|++|+..||+.
T Consensus 374 ~~~~~~~~~~---~----~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 374 ELGGTTDLEF---I----DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred hcccchhhhh---c----chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 76553 211 1 12334779999999999999999886 489999999999985
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=324.29 Aligned_cols=257 Identities=46% Similarity=0.724 Sum_probs=233.6
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhcc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 207 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 207 ~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
++....+.++|++++|++.+++.+++.+.+++.+++.+.. ...+++++|||||||||||++|+++|++++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4455678999999999999999999999999999998876 477888999999999999999999999999999999999
Q ss_pred ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 286 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
++.++|.|++++.++.+|..|+..+||||||||+|++++.++.....+ ..+++++++..++++....+ |+||++||+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~--~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS--GRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH--HHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 999999999999999999999999999999999999999987543322 26899999999999876554 889999999
Q ss_pred CCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCC--CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 366 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 366 p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~--~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
|+.+|++++| ||+..+++++||.++|.+|++.++..... ..+.++..+++.++||+++||..+|++|...+.++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999985554 4688999999999999999999999999999998754
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHH
Q 010888 442 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 488 (498)
Q Consensus 442 ~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~~~~~~~ 488 (498)
..+++.+||..|++..+|+.. |++|
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 124999999999999999987 8888
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=313.37 Aligned_cols=231 Identities=35% Similarity=0.638 Sum_probs=215.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.....|+||.|+.++|+.+.+.+.+|.+||..|... .+-+.++|||||||||||+||.++|..++..|+.|.+.++.++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 344899999999999999999999999999999876 7777899999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
|.|.+++.++.+|.+|+..+|||||+||+|+++|+|+.. ...+..+++++|+.+|||...- ..|.|+|+|.+|+.+|
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl-~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGL-DGVYILAATSRPDLID 817 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhcccccc-ceEEEEEecCCccccC
Confidence 999999999999999999999999999999999998743 3456789999999999999764 4599999999999999
Q ss_pred HHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 371 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 371 ~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
|+++| |+++.++.++|+..+|.+|++.+........++|++.+|.+|+||||+||..++..|.+.++++.++...
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999 9999999999999999999999999888899999999999999999999999999999999998776544
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=321.46 Aligned_cols=243 Identities=38% Similarity=0.596 Sum_probs=219.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
...++|.|+.|++++|++|.+++ .++++|+.|..+ ...|+++||+||||||||+||+|+|.+.+.||+.++++++...
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 45589999999999999999965 568888888776 8999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc--cchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
++|.....++.+|..|+...|||+||||||++...|+. ........+..+++|+.+|||+... ..|+|+++||+|+.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDI 462 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccc
Confidence 99999999999999999999999999999999998852 2234455678999999999999766 56999999999999
Q ss_pred CCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 369 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 369 Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
||++++| ||++.+++++|+...|..|++.+++..... .+.++..+|.+|.||+|+||.++|++|+..++|+-.
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~---- 538 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL---- 538 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc----
Confidence 9999999 999999999999999999999999998885 667888899999999999999999999999998622
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
..|+.+||..|++..
T Consensus 539 --------------~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 539 --------------REIGTKDLEYAIERV 553 (774)
T ss_pred --------------CccchhhHHHHHHHH
Confidence 238999999999954
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=280.42 Aligned_cols=246 Identities=38% Similarity=0.631 Sum_probs=223.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.+.|.+++.||.|++-.|+++++.+..|+.+.+++... ..||++||+|||||||||+||+++|+.....|+.+.++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45689999999999999999999999999999988875 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+|.|+..+.++.+|+.|+.++|+||||||+|+++.+|-+.. +......+++-+|+.+|+|+... .+|-||.+||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-TNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-cceEEEEecCccc
Confidence 999999999999999999999999999999999998875433 23344567888899999999654 4588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.|||+++| |+++.|+||+||..+++-++..+..++.+..++|++.+..+-+..|++||..+|++|.+.++|+..
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---- 381 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---- 381 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
. -+...||+++-+..
T Consensus 382 --y------------vvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 --Y------------VVLQKDFEKAYKTV 396 (408)
T ss_pred --e------------eeeHHHHHHHHHhh
Confidence 1 17889999988764
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=304.87 Aligned_cols=249 Identities=39% Similarity=0.642 Sum_probs=221.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|+||+|++.+++++++.+.+|+.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35789999999999999999999999999999988875 68889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.++.|.+++.++.+|..++...|+||||||+|.++..+..... ......+++..++..++++.... ++.||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEecCCch
Confidence 9999999999999999999999999999999999877643221 12234567788888898875443 588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|++++| ||+..+++++|+.++|..|++.++.......+.++..++..+.||||+||..+|++|...++++-.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~---- 371 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR---- 371 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 99999998 999999999999999999999999988888889999999999999999999999999999887511
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
..|+++||.+|+++....
T Consensus 372 --------------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 372 --------------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------CccCHHHHHHHHHHHHhc
Confidence 139999999999987554
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=278.56 Aligned_cols=250 Identities=38% Similarity=0.609 Sum_probs=225.6
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
+....|+.+++-+.|++...+++++.+..|.++|++|..+ ...|+++|||||||||||++|+++|+...+.|+.+++++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 4456899999999999999999999999999999999987 788899999999999999999999999999999999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch--hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATN 364 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn 364 (498)
+..+|.|+..+.++.+|-.|+.++|+|||.||||++...|.+... ++++ .+..-+|+.++||+.... ++-||.+||
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeatk-nikvimatn 294 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEATK-NIKVIMATN 294 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhcccccccc-ceEEEEecc
Confidence 999999999999999999999999999999999999998865332 3343 455667889999986544 488999999
Q ss_pred CCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 365 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 365 ~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
+.+-||++++| |+++.|+||+|+.+.|.+||+.+.+++.+....++..+|.+..|.||+++..+|.+|.+.++|+-
T Consensus 295 ridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer-- 372 (404)
T KOG0728|consen 295 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER-- 372 (404)
T ss_pred ccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999852
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+ ..+|.+||+-|..+.-..
T Consensus 373 ----r------------vhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 ----R------------VHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ----h------------ccccHHHHHHHHHHHHhc
Confidence 1 128999999999875433
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=306.15 Aligned_cols=255 Identities=24% Similarity=0.342 Sum_probs=217.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
.+..+|++|.|++.+|+.+.+....+... .......+++++||+||||||||++|+++|++++.+++.++++.+.+++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~~--~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQ--ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhHH--HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 46788999999999999998755332111 1122367789999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
+|+++..++.+|..++..+||||||||+|.++..++.. .......+++..++..++. ...+|+||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999998764432 2344567888889988874 3456999999999999999
Q ss_pred HHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 372 al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~--~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
+++| ||+..+++++|+.++|.+||+.++.+.... .+.+++.+++.|.||||+||+.+|.+|...+..+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9998 999999999999999999999999876543 4778999999999999999999999998876542
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh---hhhHHHHHHHHHH
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA---HLHAHRYEKFNAD 491 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~---~~~~~~~~~~~~~ 491 (498)
.++++.+||..|++++.|++ .+++..+++|...
T Consensus 448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 13499999999999999985 3468999999875
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=285.85 Aligned_cols=246 Identities=36% Similarity=0.609 Sum_probs=222.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|..++.||.|+++..+++++.+..|+.+|+++... ..||++|+|||+||||||+||+|+|++....|+.+-++++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 35688999999999999999999999999999999876 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+|.|+..+.++.+|+.|..++|+|+||||||++..+|.+..+ ......+..-+|+++++|+..++ .|-||.+||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg-DvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG-DVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC-CeEEEEeccccc
Confidence 9999999999999999999999999999999999998865433 22233444557888999997755 488999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.|||++.| |+++.|+|+.||...++.|+..+...+.+..+++++++...-+.+||+||.++|.+|.+.|+|+-..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm--- 412 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM--- 412 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh---
Confidence 99999999 9999999999999999999999999999999999999998888999999999999999999985322
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
.++++||.+|.+++
T Consensus 413 ---------------~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 413 ---------------KVTMEDFKKAKEKV 426 (440)
T ss_pred ---------------hccHHHHHHHHHHH
Confidence 18999999998764
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=280.59 Aligned_cols=248 Identities=34% Similarity=0.570 Sum_probs=223.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|...++||.|++..+++|.+.+..|+.+.+.|..+ ..||++||+|||||||||++||+.|.+.+..|..+-+..+.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 45688899999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..|.|...+.++..|..|+...|+||||||+|++..+|-++.. ......+..-+|+.+++|++... .|-||++||+.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~-~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD-RVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc-ceEEEeeccccc
Confidence 9999999999999999999999999999999999988764332 22233455567888999997654 488999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
-|||+++| |+++.|+||.|+.+.|..|++.+.+++....++++++||+.|++|+|++.+++|-+|.+.++||-..
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at--- 398 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT--- 398 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc---
Confidence 99999998 9999999999999999999999999999999999999999999999999999999999999986221
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
.++.+||.+.+.+++.
T Consensus 399 ---------------ev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 399 ---------------EVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------------cccHHHHHHHHHHHHH
Confidence 2899999998877643
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=300.74 Aligned_cols=254 Identities=40% Similarity=0.610 Sum_probs=223.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|.++|++|+|+++.++++.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 446789999999999999999999999999999988775 6888999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
...+.|..++.++.+|..++...|+||||||+|.++..+...... .....+.+..++..++++... .++.||+|||++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~~ 280 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNRI 280 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCCh
Confidence 999999999999999999999999999999999998776543221 122344556777778776543 358899999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.+|+++++ ||+..+++++|+.++|.+||+.++.......+.++..++..|.||+++||+.+|++|...++++-
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998888888999999999999999999999999999988751
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 481 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~ 481 (498)
...|+.+||.+|+..++++...+
T Consensus 357 --------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------CCCcCHHHHHHHHHHHhcccccc
Confidence 02399999999999999886654
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=274.78 Aligned_cols=247 Identities=35% Similarity=0.571 Sum_probs=222.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+.|+++++|+.|+.+.++.+++.+..|+.+|+.|..+ ..|+++||+|||||||||++||++|++.+..|+.|-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 456799999999999999999999999999999998876 8999999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc--chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
..+|+|+..+.++.+|+.|+....||||+||+|++.+.|-+. +...++ .+..-+++.+++|+..++ ++-|+.+||+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdprg-nikvlmatnr 325 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPRG-NIKVLMATNR 325 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCCC-CeEEEeecCC
Confidence 999999999999999999999999999999999999887543 333444 445566888999997655 4888999999
Q ss_pred CCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 366 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 366 p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
|+.|||+++| |+++.++|.+||.+.|..|++.+.+.+....++.++-+|+.+..-+|++|+.+|.+|.+.++|.-..
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk- 404 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK- 404 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh-
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999874221
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
..|..||.+|+.++.
T Consensus 405 -----------------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 405 -----------------VATEKDFLDAVNKVV 419 (435)
T ss_pred -----------------hhhHHHHHHHHHHHH
Confidence 168999999988753
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=302.48 Aligned_cols=260 Identities=37% Similarity=0.546 Sum_probs=228.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
....++|.|+.|.+++|+++.+.+ .+++.|+.|..+ ...|++|||+||||||||+||+++|.+.+.||+.++.+++..
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 357799999999999999999965 456677666554 788899999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc-chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
.++|.....++.+|..|+.++||||||||+|++...|... +..++..++.+++++.+|||+. .+..|+|+++||+|+-
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpdV 300 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPDV 300 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCccc
Confidence 9999999999999999999999999999999999988643 4456667789999999999998 4456999999999999
Q ss_pred CCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 010888 369 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 446 (498)
Q Consensus 369 Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~ 446 (498)
||++++| ||++.+.++.||...|.+|++.+++..++..++++..+|+.|.|++++|+.+++++|+..+.|+-.
T Consensus 301 lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~----- 375 (596)
T COG0465 301 LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK----- 375 (596)
T ss_pred chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-----
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999998622
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhccC-----CC--hhhhHHHHHHHHH
Q 010888 447 RQEVAPDDELPQIGPIRPEDVEIALKNTR-----PS--AHLHAHRYEKFNA 490 (498)
Q Consensus 447 ~~~~~~~~~~~~~~~It~eD~~~AL~~~~-----ps--~~~~~~~~~~~~~ 490 (498)
..+++.||.+|..++- .+ .++..++-..|++
T Consensus 376 -------------~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhE 413 (596)
T COG0465 376 -------------KEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHE 413 (596)
T ss_pred -------------eeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHH
Confidence 2389999999988752 22 3444455455554
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=292.47 Aligned_cols=247 Identities=37% Similarity=0.587 Sum_probs=217.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|..+|+||.|++..++++.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 45688999999999999999999999999999988875 77889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|.....++.+|..+....|+||||||+|.+..++..... ......+.+..++..++++... .++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-GDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc-CCeEEEEecCChH
Confidence 9999999999999999999999999999999999887653221 1222344556788888887543 3588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|++++| ||+..|+|++|+.++|.+||+.++.......++++..++..+.|++++||..+|++|...|+++-
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~----- 408 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER----- 408 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999987 99999999999999999999999998888888999999999999999999999999999988752
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+ ..|+.+||..|+.++.
T Consensus 409 -r------------~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 -R------------MKVTQADFRKAKEKVL 425 (438)
T ss_pred -C------------CccCHHHHHHHHHHHH
Confidence 1 1299999999999864
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=297.43 Aligned_cols=247 Identities=37% Similarity=0.575 Sum_probs=215.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|.++|+||+|++++|+++.+.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 346789999999999999999987765 6677666543 67788999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|...+.++.+|..++...|+||||||+|.+...++... ..+......++.++..|+++.... .++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCChh
Confidence 999999999999999999999999999999999998876532 223345678889999999886544 489999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|++++| ||+..+++++|+.++|.+|++.++.......+.++..++..+.||+++||..++++|...+.++-
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999988777778889999999999999999999999988766531
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
..+|+.+||..|+.....
T Consensus 280 -------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 -------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred -------------CCCCCHHHHHHHHHHHhc
Confidence 124999999999998754
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-31 Score=274.64 Aligned_cols=246 Identities=40% Similarity=0.646 Sum_probs=213.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|.+.|++|+|+++.++++++.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 35688999999999999999999999999999888765 67889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|.....++.+|..++...|+||||||+|.+...+...... .....+.+..++..++++... .++.||+|||.++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChh
Confidence 99999988999999999999999999999999998765432211 112234556677777776443 4588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|+++++ ||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|...++++-
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999997 99999999999999999999999988877777899999999999999999999999999988751
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
. ..|+.+||.+|+.++
T Consensus 348 -~------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -R------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred -C------------CccCHHHHHHHHHHh
Confidence 1 139999999999864
|
Many proteins may score above the trusted cutoff because an internal |
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=287.76 Aligned_cols=243 Identities=36% Similarity=0.581 Sum_probs=210.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|+|++|.+++++++.+.+.. ++.++.+... ...++++||+||||||||++|+++|++++.|++.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 4568999999999999999987654 6666666554 6677899999999999999999999999999999999999988
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc-chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|..++...|+||||||+|.+...++.. ...+......++.|+..++++... .+++||++||+++.+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~L 334 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDIL 334 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhh
Confidence 888888889999999999999999999999998776532 223344567788899999987644 458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|++++| ||+..+.+++|+.++|.+||+.+++......+.++..+|..+.||+++||+.++++|+..+.|+-
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------- 407 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------- 407 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 999998 99999999999999999999999988777778889999999999999999999999988876641
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
...|+++||+.|+.++
T Consensus 408 -----------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------CCCcCHHHHHHHHHHH
Confidence 0239999999999876
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=281.30 Aligned_cols=256 Identities=34% Similarity=0.560 Sum_probs=231.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
++.. .++.|.......+++.+..++.++..+... .++++++|+|||||||||.+++++|++.+..++.+++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4555 789999999999999999999999988765 88899999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 292 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
.|++++.++..|+.+...+ |++|||||+|.+++++..... ..+++..+++..+++... ...++|+++||+|..||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765433 568899999999999874 45589999999999999
Q ss_pred HHHHh-cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 371 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 371 ~al~~-Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
++++| ||+..+.+..|+...|.+|++.+.+.++...+.++..+|..+.||+|+||..+|++|...+.|+
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999999886
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchhc
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEI 496 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~~~~~~~~~g~~~ 496 (498)
++++|..|+..++||+..+ ...-..|.+..|.|-
T Consensus 405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~ 441 (693)
T KOG0730|consen 405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEE 441 (693)
T ss_pred -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHH
Confidence 5778888888888887654 255567777777653
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=274.28 Aligned_cols=271 Identities=28% Similarity=0.491 Sum_probs=212.4
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------
Q 010888 207 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT------- 278 (498)
Q Consensus 207 ~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~------- 278 (498)
.+....|+++|++|+|+++.++++++.+..++.+++.+... ..+++++|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 34557799999999999999999999999999999988765 7788999999999999999999999998544
Q ss_pred ---EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 279 ---FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 279 ---~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
|+.+..+++..+|.|++++.++.+|..++.. .|+||||||+|.++..+.... .++..+.++++|+..++++.
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccc
Confidence 6677778889999999999999999888763 689999999999998775432 23345678899999999986
Q ss_pred cCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC-CCC---------CCCCHHHHHHH---
Q 010888 352 QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ-TGE---------ESLPYDLLVER--- 416 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-~~~---------~~~~l~~La~~--- 416 (498)
.. .+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... +.. ...++..+++.
T Consensus 330 ~~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 330 SL-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred cC-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 54 458999999999999999998 999999999999999999999988642 221 11122223222
Q ss_pred --------------------------hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHH
Q 010888 417 --------------------------TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 470 (498)
Q Consensus 417 --------------------------t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~A 470 (498)
++.+||++|+++|.+|...++++.+.. ....|+++|+..|
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------------~~~~~~~~~l~~a 474 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------------GQVGLRIEHLLAA 474 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------------CCcCcCHHHHHHH
Confidence 344778888888888888888765421 1124999999999
Q ss_pred HhccCCCh--hhhHHHHHHHHHHhc
Q 010888 471 LKNTRPSA--HLHAHRYEKFNADYG 493 (498)
Q Consensus 471 L~~~~ps~--~~~~~~~~~~~~~~g 493 (498)
+..-.... ...-..=++|...-|
T Consensus 475 ~~~e~~~~~~~~~~~~~~~w~~~~~ 499 (512)
T TIGR03689 475 VLDEFRESEDLPNTTNPDDWARISG 499 (512)
T ss_pred HHHhhcccccCCCCCCHHHHhhhhC
Confidence 98743221 122334467877654
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=288.42 Aligned_cols=279 Identities=38% Similarity=0.580 Sum_probs=233.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|++|+|++.+++.+++.+..++.+++.+..+ ..+++++||+||||||||++|+++|++++.+++.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 477999999999999999999999999999988776 6788999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
+.|..+..++.+|+.+....|+||||||+|.+.+.++... .+..+++++.|+..++++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998765432 233467889999999988554 4588999999999999
Q ss_pred HHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch-
Q 010888 371 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR- 447 (498)
Q Consensus 371 ~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~- 447 (498)
+++++ ||+..+++++|+.++|.+||+.+.+......+.+++.+++.+.||+++|+..+++.|+..++++....-...
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 999999999999999999999998888777788999999999999999999999999999999866421110
Q ss_pred -hccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH---HHHHHHHHHhch
Q 010888 448 -QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGS 494 (498)
Q Consensus 448 -~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~---~~~~~~~~~~g~ 494 (498)
....+... .....++++||..|++..+|+...+. ..-..|.+..|.
T Consensus 409 ~~~~i~~~~-~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~ 458 (733)
T TIGR01243 409 EAEEIPAEV-LKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGL 458 (733)
T ss_pred ccccccchh-cccccccHHHHHHHHhhccccccchhhccccccchhhcccH
Confidence 01011111 11234899999999999999875432 223356555553
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=253.92 Aligned_cols=248 Identities=34% Similarity=0.558 Sum_probs=216.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
....+++|+.+.|......++.+.+..|+..++++.+. ..+|.+++||||||||||++|+++|..++..|+.+..+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 34567899999999999999999999999999999984 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
+++.|++.+.++..|..|+...||+||+||+|++.+.+.... .......+.+-.|+.+|+++...+ .|-+|+|||+|+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~-rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLH-RVKTIMATNRPD 282 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcc-cccEEEecCCcc
Confidence 999999999999999999999999999999999998874332 223334455566677777775544 488999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.|+|+|+| |+++.++.|+|+...|..|++.+........+.+.+.+.+.++||+++|+++.|++|-.-+++....
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~--- 359 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD--- 359 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH---
Confidence 99999999 9999999999999999999998888777777888999999999999999999999999877764221
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
.+-+||+-.++++...
T Consensus 360 ---------------~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 360 ---------------EVLHEDFMKLVRKQAD 375 (388)
T ss_pred ---------------HHhHHHHHHHHHHHHH
Confidence 2678889888876543
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=273.83 Aligned_cols=246 Identities=33% Similarity=0.526 Sum_probs=212.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.....|+++.|.+.+++++.+.+.. +..+..+... ...++++||+||||||||+++++++++++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 3457799999999999999998766 3444444332 4566889999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|..++...|+||||||+|.+...+.... ..+...+++++.++..|+++... ..++||+|||+|+.+
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~l 303 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVL 303 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhc
Confidence 9999999999999999999999999999999998776432 23344567889999999988654 458999999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|++++| ||++.+++++|+.++|.+||+.++...+...+.++..+++.+.|||++||.++|++|+..++|+ +.
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~------~~ 377 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------NK 377 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc------CC
Confidence 999998 9999999999999999999999999988888899999999999999999999999999988764 10
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
..|+.+||.+|+..+.+.
T Consensus 378 ------------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 378 ------------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ------------CcccHHHHHHHHHHHhcc
Confidence 239999999999877554
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=280.14 Aligned_cols=264 Identities=34% Similarity=0.589 Sum_probs=223.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEec
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 284 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~ 284 (498)
....+.|++|.|++.++..|++.+..|+.||+.|... ..|+++||++||||||||+.|+++|..+ ...|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 4567899999999999999999999999999999876 8999999999999999999999999988 356777788
Q ss_pred cccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC
Q 010888 285 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 364 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn 364 (498)
++..++|+|+.++.++.+|+.|+...|+|+|+||||-+++.+..+.. .....+++.|+..|+|+..++. |+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq-VvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ-VVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc-eEEEcccC
Confidence 89999999999999999999999999999999999999998865433 2346789999999999987665 88999999
Q ss_pred CCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 365 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 365 ~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
+|+.+|++++| ||++.++|++|+.+.|..|+..+...-.... ..-+..+|+.+.||.|+||+.+|.+|+..++++..
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 9999999999999999999998876655332 33467899999999999999999999999998765
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 442 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 442 ~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
..+........-+. .. ..+...||..|+.+..|+.+
T Consensus 495 Pq~y~s~~kl~~d~-~~-ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDV-AL-IKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred Ceeecccccccccc-hh-hhhhhHhhhhhhhccCCCCC
Confidence 54443332221111 11 12888899999988877754
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=282.71 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=167.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc----------cc------------------------
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 293 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~----------~G------------------------ 293 (498)
..+++||||+||||||||+||+++|.+++.||+.|+++++...+ .|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 57889999999999999999999999999999999999988643 11
Q ss_pred -------CcH--HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--cCCCcEEEEEE
Q 010888 294 -------DSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 362 (498)
Q Consensus 294 -------~~~--~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~viVIaa 362 (498)
... ..++.+|+.|+..+||||||||||++..+.. ....+..|+..|++.. ....+|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 112 2378899999999999999999999976521 1234778889998763 23457999999
Q ss_pred eCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhc--CCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 363 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLL--PSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 363 Tn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l--~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
||+|+.||||++| ||++.|+++.|+..+|.+++..++ +...... ..+++.+|+.|.||+|+||.++|++|+..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999887543 3333333 3578999999999999999999999999998
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 438 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 438 rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
++-. ..|+.+||+.|+.+..+.
T Consensus 1859 rq~k------------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1859 TQKK------------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HcCC------------------CccCHHHHHHHHHHHHhh
Confidence 8621 128899999999876443
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=254.59 Aligned_cols=271 Identities=28% Similarity=0.433 Sum_probs=216.3
Q ss_pred CCCCCCcc--ccCcHHHHHHH-HHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhC-CeEEEEeccc
Q 010888 212 SPDVKWES--IKGLENAKRLL-KEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~--IvG~~~~k~~L-~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~-~~~i~v~~s~ 286 (498)
.|+-.|++ |.|++..-..+ +++.....-.|+..+++ ...-+++|||||||||||++||.|.+.++ .+---||+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46666776 46766544333 44444444456665655 66678999999999999999999999995 3455689999
Q ss_pred cchhcccCcHHHHHHHHHHHHhc--------CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 287 VVSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~--------~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
+.++|+|+++.+++.+|..|... .-.||++||+|+++.+|+.......+...++++||..|||...-+ +++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-NIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-NIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-cEE
Confidence 99999999999999999888631 225999999999999999887778888999999999999987554 499
Q ss_pred EEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC----CCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 359 VLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ----TGEESLPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~----~~~~~~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
||+-||+.+.+|++|+| ||...+++.+||+.-|.+|++.+.+.+ .+..++|+.+||..|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999998876544 345789999999999999999999999999
Q ss_pred HhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHH
Q 010888 433 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYE 486 (498)
Q Consensus 433 ~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~~~~~ 486 (498)
...|+-|..+.- ......+. .. +.-.++++||..||.+++|+..-..+.|+
T Consensus 452 ~S~A~nR~vk~~-~~~~~~~~-~~-e~lkV~r~DFl~aL~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 452 QSFAMNRHVKAG-GKVEVDPV-AI-ENLKVTRGDFLNALEDVKPAFGISEEDLE 502 (744)
T ss_pred HHHHHHhhhccC-cceecCch-hh-hheeecHHHHHHHHHhcCcccCCCHHHHH
Confidence 999998876533 11221111 11 12249999999999999999754333333
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=238.48 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=142.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHh-----cCCeEEEEcCccch
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAI 322 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~-----~~p~VL~IDEiD~l 322 (498)
..+|++++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|.. .+||||||||||++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 6888999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred hhhccccchhhHHHHHH-HHHHHHHhhCCc-----------cCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCH
Q 010888 323 ISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 388 (498)
Q Consensus 323 ~~~r~~~~~~~~~~~~i-~~~Ll~~ld~~~-----------~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~ 388 (498)
++.+... ......++ ..+|+..+|+.. .....|+||+|||+|+.||++++| ||++.+ .+|+.
T Consensus 225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 9987632 23333444 478999988631 235569999999999999999999 999854 58999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC
Q 010888 389 EARRAMFESLLPSQTGEESLPYDLLVERTEG 419 (498)
Q Consensus 389 ~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g 419 (498)
++|.+||+.+++...+. ..++..|++.+.|
T Consensus 301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 99999999999886554 4667777777766
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-25 Score=228.96 Aligned_cols=342 Identities=18% Similarity=0.222 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhhcccccccCCCCCccccchhhHHHHHhhhhhhccccCc----------CCCCCCCCCCCCCCCCCCCCc
Q 010888 79 FILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPE----------KGEITERPVSDGSSLNSNGHV 148 (498)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~g~~~~~~~~~ 148 (498)
..-++..|++.++++..++|+++.+.| .|.+|...+|...-+.+. ..+....+..+|.+...-...
T Consensus 115 ~~~~l~~il~~~~~~l~vvD~~G~~i~----~N~~~~~~~gl~~e~~~gk~~~~v~~~~~~s~~l~vl~~~kp~~~~~~~ 190 (560)
T COG3829 115 LRQRLEAILDSIDDGLLVVDEDGIIIY----YNKAYAKLLGLSPEEVLGKHLLDVVSAGEDSTLLEVLRTGKPIRDVVQT 190 (560)
T ss_pred HHHHHHHHHhhccCceEEEcCCCcEEE----EcHHHHHHhCCCHHHHcCCcHHHHHhccCCceehhhhhcCCcceeeeee
Confidence 456788999999999999999999999 999999999984322222 235566666777765544433
Q ss_pred ccCCChhh--HHHHhhhhcCCCcccchhHHHHHHHHhhcCCCCCCcchHHHHHHHHHhhhhhhcCCCCCCCccccCcHHH
Q 010888 149 QNTSDMAV--YEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENA 226 (498)
Q Consensus 149 ~~~~~l~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~ 226 (498)
+.+..+.+ +..+... ...+... +...............-..........++|++|+|.+..
T Consensus 191 ~~~~~~i~~~~pv~~~g---~l~G~v~--------------~~~~~~~l~~l~~~~~~~~~~~~~~a~y~f~~Iig~S~~ 253 (560)
T COG3829 191 YNGNKIIVNVAPVYADG---QLIGVVG--------------ISKDVSELERLTRELEESEGLLRLKAKYTFDDIIGESPA 253 (560)
T ss_pred ecCCceeEeeccEecCC---cEEEEEE--------------eecchHHHHHHHHHHHHHhhhhccccccchhhhccCCHH
Confidence 33333211 0001111 1111111 011111111111111111112224567899999999999
Q ss_pred HHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch-------------h
Q 010888 227 KRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------------K 290 (498)
Q Consensus 227 k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~-------------~ 290 (498)
...+.+.+.. ....+.+|||.|++||||.++|++|++.+ +.||+.+||+.+.. .
T Consensus 254 m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GA 323 (560)
T COG3829 254 MLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGA 323 (560)
T ss_pred HHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCcc
Confidence 9988887643 45667899999999999999999999988 68999999977642 2
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
+.|.....-.++|+.|.. +.||||||..|+...|.+. .+.+++.-+..+.+......+|.||||||+ .|.
T Consensus 324 FTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~LQaKL-----LRVLQEkei~rvG~t~~~~vDVRIIAATN~--nL~ 393 (560)
T COG3829 324 FTGASKGGKPGLFELANG---GTLFLDEIGEMPLPLQAKL-----LRVLQEKEIERVGGTKPIPVDVRIIAATNR--NLE 393 (560)
T ss_pred ccccccCCCCcceeeccC---CeEEehhhccCCHHHHHHH-----HHHHhhceEEecCCCCceeeEEEEEeccCc--CHH
Confidence 334333334567777776 5699999999976543322 244444444455566666678999999999 666
Q ss_pred HHHHh-cccceeEec-------CCCHHHHHHHHHHhcCCCCCCCCCCHHHHH----HHhcCCcHHHHHHHHHHHHhHHHH
Q 010888 371 AAMLR-RLEKRILVP-------LPDTEARRAMFESLLPSQTGEESLPYDLLV----ERTEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 371 ~al~~-Rf~~~i~~~-------~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La----~~t~g~s~~dL~~L~~~A~~~a~r 438 (498)
.++.. +|...++++ .|...+|.+-+..+. ..-++... +...|+++..+..|.++.|++++|
T Consensus 394 ~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~-------~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVR 466 (560)
T COG3829 394 KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLA-------EYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVR 466 (560)
T ss_pred HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHH-------HHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHH
Confidence 67666 676666554 466666654333222 11122222 225678999999999999999999
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHH-HHHhc
Q 010888 439 RLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN 473 (498)
Q Consensus 439 rl~~~le~~~~~~~~~~~~~~~~It~eD~~-~AL~~ 473 (498)
++.|.+++...+...+.. |+.+|+. ..+..
T Consensus 467 ELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~ 497 (560)
T COG3829 467 ELENVIERAVNLVESDGL-----IDADDLPAFALEE 497 (560)
T ss_pred HHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence 999999988765555543 7777777 55554
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-21 Score=191.91 Aligned_cols=214 Identities=24% Similarity=0.382 Sum_probs=164.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
...+-.|+++|-.....+.+.++...-- +. .....|-+++|+|||||||||++|+.+|..+|..+..+.+.++..-
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aTa-NT---K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIATA-NT---KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHhc-cc---ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 3456669999999999888887654321 11 1124566899999999999999999999999999999988876533
Q ss_pred cccCcHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
. .+.-..++.+|+-++... .-+|||||+|.++..|... ..++..+..++.||..-. .....++++.+||+|.++
T Consensus 424 G-~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt-ymSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 424 G-AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT-YMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDL 498 (630)
T ss_pred c-hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh-hhcHHHHHHHHHHHHHhc---ccccceEEEeccCCccch
Confidence 2 234557899999988754 4588999999999887643 345556777888877654 334558888999999999
Q ss_pred CHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC---------------------------CCCHHHHHHHhcCCcH
Q 010888 370 DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE---------------------------SLPYDLLVERTEGYSG 422 (498)
Q Consensus 370 d~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~---------------------------~~~l~~La~~t~g~s~ 422 (498)
|.++-+|++..++||+|..++|..+|..++.++.... +..+.+.|++|+||||
T Consensus 499 DsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 499 DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9999999999999999999999999998875443210 1114568899999999
Q ss_pred HHHHHHHHHHH
Q 010888 423 SDIRLVSKEAA 433 (498)
Q Consensus 423 ~dL~~L~~~A~ 433 (498)
++|..|+....
T Consensus 579 REiakLva~vQ 589 (630)
T KOG0742|consen 579 REIAKLVASVQ 589 (630)
T ss_pred HHHHHHHHHHH
Confidence 99998876433
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=191.95 Aligned_cols=214 Identities=19% Similarity=0.249 Sum_probs=157.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhcc--C--CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTG--L--LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 286 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~--~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~ 286 (498)
++++|++++|+++.+++.+.. .++.... . ..++.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999999876532 3332221 1 2244579999999999999999999976 24699999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+.+.|.++.....+++.+. ++||||||+|.+...+.. .+..+..++.|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQ---RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcH
Confidence 999999988877777777764 489999999998643221 223466778888888743 2446777777542
Q ss_pred C-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHH------hcCC-cHHHHHHHHHHHH
Q 010888 367 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGY-SGSDIRLVSKEAA 433 (498)
Q Consensus 367 ~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~------t~g~-s~~dL~~L~~~A~ 433 (498)
. .++|++++||+..++|+.++.+++..|++.++.+.....+.+ ...+... ...+ ++++++++++.+.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 1 357999999999999999999999999999987665443322 2233332 1233 3899999999999
Q ss_pred hHHHHHHHH
Q 010888 434 MQPLRRLMV 442 (498)
Q Consensus 434 ~~a~rrl~~ 442 (498)
.....|+..
T Consensus 252 ~~~~~r~~~ 260 (287)
T CHL00181 252 MRQANRIFE 260 (287)
T ss_pred HHHHHHHHc
Confidence 888887665
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=187.09 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=153.7
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccC---CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeccc
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 286 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~---~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~ 286 (498)
+++++|++++|+++++.+.++.........+ .+...+++|+||||||||++|+++|+.+ ..+++++++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 5789999999999999887754432222222 2344689999999999999999999875 34788999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+.+.|+....++.+|+.+. ++||||||+|.|....+ ....+..++.++..++.. ...+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~-----~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE-----KDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc-----cchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 999999999888888887764 47999999999864211 122345667788887743 2335555554332
Q ss_pred -----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh---------cCCcHHHHHHHHHH
Q 010888 367 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT---------EGYSGSDIRLVSKE 431 (498)
Q Consensus 367 -----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t---------~g~s~~dL~~L~~~ 431 (498)
..++|++++||...+.|+.++.+++..|++.++.......+.+ ++.+++.. ..-+++.+++++..
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2368899999988899999999999999999987655443322 33343321 12456777778877
Q ss_pred HHhHHHHHHH
Q 010888 432 AAMQPLRRLM 441 (498)
Q Consensus 432 A~~~a~rrl~ 441 (498)
|......|++
T Consensus 234 a~~~~~~r~~ 243 (261)
T TIGR02881 234 AIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHh
Confidence 7766655544
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=188.97 Aligned_cols=213 Identities=18% Similarity=0.200 Sum_probs=156.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcc-C---CCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CeEEEEecccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTG-L---LSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASSV 287 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~-~---~~~~~~vLL~GppGtGKT~lAraia~~l~-------~~~i~v~~s~l 287 (498)
+++|++++|+++.+.+.+ +..++.... . ..+..+++|+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998766 333333322 1 23456899999999999999999998772 37999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p- 366 (498)
.+.+.|.+...++.+++.+. +++|||||++.+.+.++. ......+++.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence 99999988888888887764 389999999998643222 123356777888888732 3457777777543
Q ss_pred -C---CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh------c-CCcHHHHHHHHHHHHh
Q 010888 367 -W---ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------E-GYSGSDIRLVSKEAAM 434 (498)
Q Consensus 367 -~---~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t------~-g~s~~dL~~L~~~A~~ 434 (498)
+ .++|++.+||...+.||.++.+++..|++.++.+.....+.+ +..+.... . --+++++++++..+..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 258999999999999999999999999999997754432222 23333331 1 2357888888888887
Q ss_pred HHHHHHHH
Q 010888 435 QPLRRLMV 442 (498)
Q Consensus 435 ~a~rrl~~ 442 (498)
....|+..
T Consensus 252 ~~~~r~~~ 259 (284)
T TIGR02880 252 RQANRLFC 259 (284)
T ss_pred HHHHHHhc
Confidence 77776654
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=200.73 Aligned_cols=242 Identities=21% Similarity=0.264 Sum_probs=196.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
.....+||+|+||||||++++++|+++|.+++.++|.++.....+..+..+...|..|+...|+|||+-++|.+..+..+
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999855443
Q ss_pred cchhhHHHHHHHHHHHHHh--hCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC
Q 010888 329 ARSEHEASRRLKTELLIQM--DGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE 406 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~l--d~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~ 406 (498)
+ ...++...+-..+ +....+...++||++|+..+.+++.+++-|..++.++.|+.++|.+||+.++....+..
T Consensus 509 g-----ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~ 583 (953)
T KOG0736|consen 509 G-----EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ 583 (953)
T ss_pred c-----hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccch
Confidence 1 1233444333333 33344566799999999999999999999989999999999999999999999999988
Q ss_pred CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh--hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH--
Q 010888 407 SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA-- 482 (498)
Q Consensus 407 ~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l--e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~-- 482 (498)
++.+..++.++.||+.+++..++.+....+..+..+.. ...++........+...++++||.+++.+.+...++.+
T Consensus 584 ~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGA 663 (953)
T KOG0736|consen 584 DVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGA 663 (953)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999999999999999988665555554432 11223334444555677999999999998887766543
Q ss_pred --HHHHHHHHHhchh
Q 010888 483 --HRYEKFNADYGSE 495 (498)
Q Consensus 483 --~~~~~~~~~~g~~ 495 (498)
.+-..|.+..|-|
T Consensus 664 PKIPnV~WdDVGGLe 678 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLE 678 (953)
T ss_pred CCCCccchhcccCHH
Confidence 4567788877765
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=165.55 Aligned_cols=130 Identities=41% Similarity=0.660 Sum_probs=116.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchh
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.+..+|..+.... |+||||||+|.+.+..+ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~--~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ--PSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS--TSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc--ccc
Confidence 689999999999999999999999999999999998888999999999999998887 99999999999998872 223
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHH-hcccceeEecC
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL 385 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~-~Rf~~~i~~~~ 385 (498)
......+.+.++..++.......+++||++||.++.++++++ +||+..+++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 445577889999999988777677999999999999999999 99999998874
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-20 Score=181.86 Aligned_cols=186 Identities=31% Similarity=0.430 Sum_probs=149.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchh--hccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEe
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKY--FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNIS 283 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~--~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~ 283 (498)
--|++++-..++|++|..++...+...+. -..+....+-+|+|||||||||+|++++|+.+ ...++++|
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 34888888889999999887664433222 12235555779999999999999999999988 34679999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhc---CC--eEEEEcCccchhhhccccc--hhhHHHHHHHHHHHHHhhCCccCCCc
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHH---AP--STIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDEL 356 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~---~p--~VL~IDEiD~l~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~ 356 (498)
+..+.++|.+++.+.+..+|++.... .. -.++|||+++++..|.... .+....-+++++++.++|.+.. ..+
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~-~~N 297 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR-YPN 297 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-CCC
Confidence 99999999999999999999877642 22 3567899999998885432 2333345789999999998864 455
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
|++++|+|-.+.+|.++.+|-+-..++.+|+...+.+|++.++.+
T Consensus 298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=191.40 Aligned_cols=239 Identities=22% Similarity=0.259 Sum_probs=187.1
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeccccchhccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSVVSKWRG 293 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s~l~~~~~G 293 (498)
.+++-...+|++..+....| .....++||+||+|||||.|+++++++.. +.+..++|+.+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 45566666777666544333 33446899999999999999999999884 56778999999887777
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc-cchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHH
Q 010888 294 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 372 (498)
Q Consensus 294 ~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~-~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~a 372 (498)
...+.+..+|..+.+++|+||++|++|.+++.... ........+++...+.+.+..+...+..+.+|++.+....+++.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 77888899999999999999999999999984332 22333344454444445555556666778999999999999998
Q ss_pred HHh--cccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 373 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 373 l~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
+.+ +|+..+.++.|+..+|.+||+..+.+.... ...+++-++..|+||...|+..++.+|.+.+.++....
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~------ 631 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN------ 631 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc------
Confidence 887 899999999999999999999998776633 33457779999999999999999999999988542211
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHL 480 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~ 480 (498)
..+-+|.++|.++|+.+.|....
T Consensus 632 --------~~klltke~f~ksL~~F~P~aLR 654 (952)
T KOG0735|consen 632 --------GPKLLTKELFEKSLKDFVPLALR 654 (952)
T ss_pred --------CcccchHHHHHHHHHhcChHHhh
Confidence 11139999999999999998754
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=183.90 Aligned_cols=225 Identities=23% Similarity=0.339 Sum_probs=172.2
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCC-ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcc
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 292 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~-~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~ 292 (498)
+.+|+.++-..+.|+.+.+.+..+++...++.+...++ ++.|||||||||||+++.|+|+.++..++.++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 37799999999999999999999999999998875555 79999999999999999999999999999998876632
Q ss_pred cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch---hh--HHHHHHHHHHHHHhhCCccCC-CcEEEEEEeCCC
Q 010888 293 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS---EH--EASRRLKTELLIQMDGLTQSD-ELVFVLAATNLP 366 (498)
Q Consensus 293 G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~---~~--~~~~~i~~~Ll~~ld~~~~~~-~~viVIaaTn~p 366 (498)
... ++.++.... ..+||+|+|||.-+.-+..... .. ..++..++.||..+||+...- .-.+||.|||..
T Consensus 274 --n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 --DSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --cHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 222 666654433 3489999999987543221111 11 134578899999999995443 346688999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC--CcHHHHHH-HHHH--HHhHHHHH
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSKE--AAMQPLRR 439 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g--~s~~dL~~-L~~~--A~~~a~rr 439 (498)
+.|||||+| |++.++++..-+.+..+.++..++.... ...-.+++.+...+ .||+|+.. ++.. .+..++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999986533 11123444444333 69999976 4444 57788888
Q ss_pred HHHHhhchh
Q 010888 440 LMVLLEGRQ 448 (498)
Q Consensus 440 l~~~le~~~ 448 (498)
+.+.++...
T Consensus 427 Lv~~l~~~~ 435 (457)
T KOG0743|consen 427 LVEALESKK 435 (457)
T ss_pred HHHHHHhhh
Confidence 887776543
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=163.11 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=124.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.-++.+|+|++|+++++..++-.+...... ..+..++|||||||+|||+||+.||++++.++..+++..+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 345789999999999999988766442211 233468999999999999999999999999999988865421
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-----C----------CC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-----S----------DE 355 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-----~----------~~ 355 (498)
...+..++... ....|||||||+.+. +..++.|+..|+...- . -.
T Consensus 89 -----~~dl~~il~~l--~~~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 89 -----AGDLAAILTNL--KEGDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred -----HHHHHHHHHhc--CCCcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 12223333333 235799999999984 4467778888875421 1 12
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHH
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~ 430 (498)
+..+|+||++...|++.+++||.....+..++.++...|++..........+. ...++|.++.| +|+-...+++
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 46789999999999999999998888999999999999999887766655333 35667777776 5554333433
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=167.30 Aligned_cols=213 Identities=24% Similarity=0.301 Sum_probs=143.5
Q ss_pred CCCCCCccccCcHHHHH---HHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~---~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
-++.++++++|++.... -|.+.+. .....+++||||||||||++|+.||+..+.+|..+|+...
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~- 84 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS- 84 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-
Confidence 34788999999998653 3333332 1234689999999999999999999999999999987432
Q ss_pred hhcccCcHHHHHHHHHHHHhcC----CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-
Q 010888 289 SKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT- 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~----p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT- 363 (498)
+.+.++.+++.++... ..|||||||+.+- +..++.||-.++ + +.|++|++|
T Consensus 85 ------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-------------K~QQD~lLp~vE----~-G~iilIGATT 140 (436)
T COG2256 85 ------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-------------KAQQDALLPHVE----N-GTIILIGATT 140 (436)
T ss_pred ------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-------------hhhhhhhhhhhc----C-CeEEEEeccC
Confidence 4566888888885432 4899999998884 334566777765 2 335556554
Q ss_pred -CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC--CCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 364 -NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS--QTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 364 -n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~--~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
|+...++++++||+ .++.+.+.+.++...++...+.. ..+.. ...+ ..+....+-....+..|+
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i-----------~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL-----------DEEALDYLVRLSNGDARR 208 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC-----------CHHHHHHHHHhcCchHHH
Confidence 55578999999999 66888888888888888873322 22220 1111 123333344445555667
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 478 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~ 478 (498)
.+|.+|.......... .++.+++++.+.+-.+..
T Consensus 209 aLN~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~ 242 (436)
T COG2256 209 ALNLLELAALSAEPDE-----VLILELLEEILQRRSARF 242 (436)
T ss_pred HHHHHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhcc
Confidence 7777776555443332 255888888887765543
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-17 Score=182.11 Aligned_cols=176 Identities=22% Similarity=0.350 Sum_probs=135.3
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+...+.....+-++++++|.++..+.+.+.+.. ....+++|+||||||||++|+++|+++
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 334444444567899999999999988876632 223689999999999999999999987
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+..++.++++.+. .++.|+.+..++.+++.+....++||||||+|.+.+.........+ ..+.|...+.
T Consensus 236 l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l~--- 308 (731)
T TIGR02639 236 LKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPALS--- 308 (731)
T ss_pred hcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHHh---
Confidence 7789999988887 4788999999999999998778899999999999875432221111 2233333332
Q ss_pred cCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 352 QSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 352 ~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
.+.+.+|++||.. ...|+++.|||. .++++.|+.+++..||+.....
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 2347788888863 357999999996 6999999999999999976644
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=163.46 Aligned_cols=219 Identities=18% Similarity=0.130 Sum_probs=150.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
.++.+|++++|+++.++.+...+..... ...++.++||+||||||||++|+++|++++..+..+++..+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 4567899999999999999987754211 124457899999999999999999999999988777665432
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc---------------cCCCc
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDEL 356 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~ 356 (498)
....+..++... ..+++|||||+|.+.... .+.++..++... ..-.+
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchHH-------------HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 112233333332 346899999999985421 122333333211 01123
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~ 435 (498)
+.+|++||++..+++++++||...+.++.|+.+++.++++..+.......+. .+..+++.+.|.. +.+..+++.++..
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 6788999999999999999998889999999999999999888766554332 3667888777644 6666666655543
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 436 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 436 a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+..+ ....|+.+++..++......
T Consensus 230 a~~~------------------~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 230 AQVK------------------GDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence 3221 01137777777777766544
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-17 Score=175.06 Aligned_cols=255 Identities=19% Similarity=0.229 Sum_probs=158.5
Q ss_pred chhHHHHHHHHhhcCCCCCCcchHHHHHHH-----HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhcc
Q 010888 172 LNGVLANVINERLQKPLLPNFDSAETRALA-----ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG 246 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~ 246 (498)
.+-+||+.++....+++.-.-+........ .++...+....++.+|++++|++..++.++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~----------- 82 (531)
T TIGR02902 14 IGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC----------- 82 (531)
T ss_pred HHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh-----------
Confidence 446777777765555544333332211111 1233445556778999999999999999986542
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEecccc-------chhcccCcHH------------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV-------VSKWRGDSEK------------ 297 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~s~l-------~~~~~G~~~~------------ 297 (498)
...+.++||+||||||||++|+++++.+ +.+|+.++|+.. .....|....
T Consensus 83 -~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~ 161 (531)
T TIGR02902 83 -GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIA 161 (531)
T ss_pred -CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccC
Confidence 2334689999999999999999998753 368999998632 1111110000
Q ss_pred ----HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc----------------------
Q 010888 298 ----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------------- 351 (498)
Q Consensus 298 ----~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------------- 351 (498)
.....+. ....++|||||++.|.+. .++.|+..++.-.
T Consensus 162 g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (531)
T TIGR02902 162 GIPQPKPGAVT---RAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDI 225 (531)
T ss_pred CcccccCchhh---ccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhh
Confidence 0001122 223479999999998654 3444554443210
Q ss_pred ----cCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHH
Q 010888 352 ----QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIR 426 (498)
Q Consensus 352 ----~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~ 426 (498)
.+....+|++||+.|+.+++++++|+ ..+.++.++.++..+|++..+++.....+. .++.++..+ .+++++.
T Consensus 226 ~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~ 302 (531)
T TIGR02902 226 FQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAV 302 (531)
T ss_pred cccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHH
Confidence 01122445566788999999999999 568899999999999999988765543222 233344333 2566776
Q ss_pred HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 427 LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 427 ~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
++++.|+..+..+ . ...|+.+|++.++...+
T Consensus 303 nll~~Aa~~A~~~------~------------~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 303 NIVQLAAGIALGE------G------------RKRILAEDIEWVAENGN 333 (531)
T ss_pred HHHHHHHHHHhhC------C------------CcEEcHHHHHHHhCCcc
Confidence 6666665433221 1 02399999999997543
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=161.72 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=132.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCc
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~ 295 (498)
+|++++|++++++.|..++..... ...++.+++|+||||||||++|+++|++++.++..+++.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 689999999999999988754321 1233468999999999999999999999998877666543221
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc---------------cCCCcEEEE
Q 010888 296 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 360 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~viVI 360 (498)
...+...+... ..+.+|||||++.+.... .+.|+..++... ....++.+|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 11122222222 346899999999986431 222333332111 112347788
Q ss_pred EEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010888 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 361 aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~ 434 (498)
++||.+..+++++++||...+.++.|+.++..++++..+.......+ ..++.+++.+.|.. +.+..++..++.
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 99999999999999999888899999999999999988765444332 33667888877754 555666665553
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-19 Score=183.55 Aligned_cols=220 Identities=20% Similarity=0.194 Sum_probs=157.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+...+..|||.+.++.++.+.+.. ..+...+|||.|++||||..+||+|++.+ +.||+++||+.+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEV----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHH----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 3466788999999999999998855 34566899999999999999999999988 6899999997664
Q ss_pred ---------hhcccCcHHHH---HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCc
Q 010888 289 ---------SKWRGDSEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 356 (498)
Q Consensus 289 ---------~~~~G~~~~~l---~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 356 (498)
+...|.....+ ++.|+.|.+ +.||+|||..|+...|.+.+ +.+++.-++.+.+-.....+
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~lQaKLL-----RvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLALQAKLL-----RVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHHHHHHHH-----HHHhhcceeecCCCceeEEE
Confidence 33333333322 234555554 67999999999877554433 66666666666666555667
Q ss_pred EEEEEEeCCCCCCCHHHHh-cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHHHHHH
Q 010888 357 VFVLAATNLPWELDAAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRLVSKE 431 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~-Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~L~~~ 431 (498)
|.|||+||+ +|..+++. +|...+|+++....-....|+.+-.+.+.....-++.+..+ ...++++.++.+.+.
T Consensus 359 VRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 359 VRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 999999999 88888887 78777766554443333333333322222222223333332 335899999999999
Q ss_pred HHhHHHHHHHHHhhchhccC
Q 010888 432 AAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 432 A~~~a~rrl~~~le~~~~~~ 451 (498)
.|++++|++.+.++++...+
T Consensus 437 ~wPGNVRELen~veRavlla 456 (550)
T COG3604 437 EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 99999999999999877644
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-19 Score=185.13 Aligned_cols=214 Identities=20% Similarity=0.237 Sum_probs=147.9
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh-
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK- 290 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~- 290 (498)
....+++|.+.+++++.+.+.. ......+|||+|++||||..+||+|++.+ +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4688999999999999998744 45667899999999999999999999988 569999999766432
Q ss_pred --------cccCcHHHH---HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 291 --------WRGDSEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 291 --------~~G~~~~~l---~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
-.|...... ...|+.|.+ ++||||||..|+...|.+. .+.+++.-+..+.+.....-+|.|
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~~Q~kL-----LRvLqe~~~~rvG~~~~i~vdvRi 279 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLELQVKL-----LRVLQEREFERVGGNKPIKVDVRI 279 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHHHHHHH-----HHHHHcCeeEecCCCcccceeeEE
Confidence 222222222 234555554 7899999999976533221 233333333344444444557999
Q ss_pred EEEeCCCCCCCHHHHh-ccccee-------EecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHH
Q 010888 360 LAATNLPWELDAAMLR-RLEKRI-------LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRL 427 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~-Rf~~~i-------~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~ 427 (498)
|++||. +|...+.. +|...+ .+..|...+|.+-+ +.....-+..+++. ..++++..+..
T Consensus 280 IaaT~~--dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDI-------p~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 280 IAATNR--DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDI-------PLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred EeecCc--CHHHHHHcCCcHHHHHhhhccceecCCcccccchhH-------HHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 999998 66655554 555444 45556665655432 22222233444443 35799999999
Q ss_pred HHHHHHhHHHHHHHHHhhchhccCCCCC
Q 010888 428 VSKEAAMQPLRRLMVLLEGRQEVAPDDE 455 (498)
Q Consensus 428 L~~~A~~~a~rrl~~~le~~~~~~~~~~ 455 (498)
|..+.|++|+|++.|.+++...+.+.+.
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~~~~~ 378 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILSEGPE 378 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999998877666554
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=176.40 Aligned_cols=232 Identities=21% Similarity=0.213 Sum_probs=151.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc---------h
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------S 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~---------~ 289 (498)
+++|++.+++.+.+++....... .....+++|+||||||||++|+++|+.++.+++.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58899999999998776543211 12234799999999999999999999999999999875432 2
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC-----Cc-------cCCCcE
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-----LT-------QSDELV 357 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-----~~-------~~~~~v 357 (498)
.|.|.....+...+..+....| ||+|||+|.+.+..+.. ..+.|+..++. +. ....++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 4566666667777777765554 89999999998643221 12345555542 11 112468
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcC-----CCCCC------CCCCHHHHHHH-hcCCcHHHH
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE------ESLPYDLLVER-TEGYSGSDI 425 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~------~~~~l~~La~~-t~g~s~~dL 425 (498)
++|+|||.++.+++++++|| ..++++.|+.+++..|++.++. ...+. .+..+..+++. +..+..++|
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 89999999999999999999 4789999999999999987652 11221 11224444442 333445666
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhc
Q 010888 426 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 473 (498)
Q Consensus 426 ~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~ 473 (498)
+..+........+++... .. ..... .....++.+++++.|..
T Consensus 544 ~r~i~~~~~~~~~~~~~~--~~--~~~~~--~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 544 ERQIEKICRKAAVKLVEQ--GE--KKKSE--AESVVITPDNLKKYLGK 585 (775)
T ss_pred HHHHHHHHHHHHHHHHhc--cC--cccCC--cccccCCHHHHHHhcCc
Confidence 666665554444433210 00 00000 11134889988888764
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-18 Score=182.46 Aligned_cols=322 Identities=19% Similarity=0.153 Sum_probs=186.5
Q ss_pred HHHHHHhhcccccccCCCCCccccchhhHHHHHhhhhhhc-------cccCcCCCCCCCCCCCCCCCCCCC-CcccCCCh
Q 010888 83 AISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKK-------IKEPEKGEITERPVSDGSSLNSNG-HVQNTSDM 154 (498)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~l 154 (498)
+..||+++++|++++|.++.+.| +|..+.+.||... +.++.++.........+....... ...++...
T Consensus 82 L~aIL~sm~eGVi~vD~~G~I~~----iN~aA~~Llg~~~eel~Gk~i~eli~~~~l~~~le~~~~~~~~~~v~~~g~~~ 157 (520)
T PRK10820 82 LSALLEALPEPVLSIDMKGKVEL----ANPASCQLFGQSEEKLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQDF 157 (520)
T ss_pred HHHHHHhCCCcEEEECCCCeeeH----hHHHHHHHHCcCHHHHCCCcHHHHcCcchHHHHHHcCCCccceEEEEECCEEE
Confidence 67899999999999999999999 9999999999743 233322222222222222200000 00111111
Q ss_pred hhHHHHhh--hhcCCCcccchhHHHHHHHHhhcCCCCCCcchHHHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHH
Q 010888 155 AVYEQYRT--QFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE 232 (498)
Q Consensus 155 ~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~ 232 (498)
-+...+.. +..+.. ...+..+ +..+...+ ...+. -........|++++|.+...+++.+
T Consensus 158 ~v~~~PI~~~d~~g~~-~~~GaVi-----------vlrd~~~l-----~~~~~--~~~~~~~~~f~~~ig~s~~~~~~~~ 218 (520)
T PRK10820 158 LMEITPVYLQDENDQH-VLVGAVV-----------MLRSTARM-----GRQLQ--NLAVNDDSAFSQIVAVSPKMRQVVE 218 (520)
T ss_pred EEEEEeeeecCCCCce-eEEEEEE-----------EeccHHHH-----HHHHH--hhhccccccccceeECCHHHHHHHH
Confidence 11000000 000000 0001000 00110000 00000 0123456889999999998888887
Q ss_pred HHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-----ccCcH-------H
Q 010888 233 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-----RGDSE-------K 297 (498)
Q Consensus 233 ~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~-----~G~~~-------~ 297 (498)
.+... .....+|||+|++||||+++|++++..+ +.||+.++|+.+.... .|... .
T Consensus 219 ~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~ 288 (520)
T PRK10820 219 QARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALE 288 (520)
T ss_pred HHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCccc
Confidence 76432 2334679999999999999999998876 4799999998774321 11110 1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCC---
Q 010888 298 LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP--- 366 (498)
Q Consensus 298 ~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p--- 366 (498)
....+|+.+. .++|||||+|.|.+. ++..|+..++.-. ....++.||++|+.+
T Consensus 289 ~~~g~~e~a~---~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 289 GKKGFFEQAN---GGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred CCCChhhhcC---CCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 1122344433 478999999999654 4445555554311 112357788888764
Q ss_pred ----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHHHHHHHHhHHHH
Q 010888 367 ----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 367 ----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~L~~~A~~~a~r 438 (498)
..+.+.+..|+.. +.+.+|...+|.+-+..++.. -+..++.+ ..++++..+..|.++.|++++|
T Consensus 353 l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~-------fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvr 424 (520)
T PRK10820 353 LVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTEL-------FVARFADEQGVPRPKLAADLNTVLTRYGWPGNVR 424 (520)
T ss_pred HHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHH-------HHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHH
Confidence 1255667777743 778888888877533322211 11222322 2368899999999999999999
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHH
Q 010888 439 RLMVLLEGRQEVAPDDELPQIGPIRPEDV 467 (498)
Q Consensus 439 rl~~~le~~~~~~~~~~~~~~~~It~eD~ 467 (498)
++.+.++.+...+.+.. |+.+|+
T Consensus 425 eL~nvl~~a~~~~~~~~------i~~~~~ 447 (520)
T PRK10820 425 QLKNAIYRALTQLEGYE------LRPQDI 447 (520)
T ss_pred HHHHHHHHHHHhCCCCc------ccHHHc
Confidence 99999988766544433 666664
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-16 Score=163.55 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=123.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++++|++.+++.|+..+... ..++.+||+||||||||++|+.+|+.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 3567889999999999999999887431 233569999999999999999999998652
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++.- .....++.+.+.+. .....|++|||+|.|. ....+
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-------------~~A~N 139 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-------------DQSFN 139 (484)
T ss_pred cHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-------------HHHHH
Confidence 333333211 11223444443332 3345799999999884 33567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++. ....+++|.+|+.+..+.+++++|| ..+.|+.++.++-...++..+.......+ ..+..+++...|
T Consensus 140 ALLKtLEE---Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 140 ALLKTLEE---PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHHhhc---CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888863 3455788888888999999999999 55888888888888888888765443322 223444444443
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=168.77 Aligned_cols=188 Identities=19% Similarity=0.240 Sum_probs=133.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
+++++.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+++.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456789999999999999999998754 233467899999999999999999999875
Q ss_pred -----------------eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHH
Q 010888 278 -----------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 278 -----------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
.+++++.+. ...-..++.+.+.+. .....|++|||+|.|.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------- 137 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------- 137 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------
Confidence 223333321 012233455544432 3345799999999884
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHH
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVE 415 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~ 415 (498)
....+.||+.|+. ....+++|.+||.+..+.+.++||| ..+.|+.++.++....|+.++.......+. .++.|++
T Consensus 138 ~~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 138 NHAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2356778888773 3445778888999999999999999 668999999999998888877655444332 2455666
Q ss_pred HhcCCcHHHHHHHHHHH
Q 010888 416 RTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 416 ~t~g~s~~dL~~L~~~A 432 (498)
.+.| +.++...++..+
T Consensus 214 ~A~G-s~RdALsLLdQa 229 (700)
T PRK12323 214 AAQG-SMRDALSLTDQA 229 (700)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 6555 445555555443
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=148.37 Aligned_cols=182 Identities=19% Similarity=0.182 Sum_probs=137.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.-++..|++++|++++|++|.-.+.....+ ....-++||+||||.||||||+.||+++|..+-..++..+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK- 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK- 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-
Confidence 445788999999999999999877654332 233468999999999999999999999999998888776632
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc---------------CCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDE 355 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~~ 355 (498)
..-+-.++... ...+|||||||+.+.+. +.+.|+..|+.+.- .-.
T Consensus 91 -----~gDlaaiLt~L--e~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred -----hhhHHHHHhcC--CcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 12233333332 23479999999998643 44556666664321 123
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 420 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~ 420 (498)
+.-+|++|.+...|...+++||.....+..++.++...|+...........+. ...++|+++.|-
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 47789999999999999999999999999999999999999988766665443 466788888763
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=167.65 Aligned_cols=189 Identities=19% Similarity=0.194 Sum_probs=133.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++++.+++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456789999999999999999988743 1234578999999999999999999988642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+++++.++- ..-..++.+++.+.. ....|+||||+|.|.. ...+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A~N 137 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HAFN 137 (830)
T ss_pred HHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HHHH
Confidence 333333211 122334555554432 3457999999998842 3456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|++.|+. ....+.+|.+||.++.+.+.+++|| ..+.|..++.++-...|+.++....+..+ ..+..|++...|-
T Consensus 138 ALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 138 AMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHHh---cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 78888773 2345778889999999999999999 66899999999999999988876655433 3355667766663
Q ss_pred cHHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEAA 433 (498)
Q Consensus 421 s~~dL~~L~~~A~ 433 (498)
.++...++..++
T Consensus 214 -mRdALsLLdQAi 225 (830)
T PRK07003 214 -MRDALSLTDQAI 225 (830)
T ss_pred -HHHHHHHHHHHH
Confidence 344444444333
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-16 Score=171.59 Aligned_cols=237 Identities=22% Similarity=0.290 Sum_probs=162.0
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 275 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------- 275 (498)
.+.+++......-.++.++|.++..+.+.+.+.. ....++||+||||||||++|+++|...
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3444555445566788999999999999987643 223688999999999999999999875
Q ss_pred ---CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 ---~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+..++.++.+.+. .++.|+.+..++.++..+....++||||||+|.+.+.........+ +.+.|...+.
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d----~~nlLkp~L~-- 312 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLLS-- 312 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH----HHHHHHHHHh--
Confidence 4566676666555 4578889999999999888878899999999999876532222222 2222222222
Q ss_pred ccCCCcEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHH-----HHHHhc--
Q 010888 351 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERTE-- 418 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~-----La~~t~-- 418 (498)
.+.+.+|++|+.++ ..|+++.|||. .+.++.|+.+++..||+.+........++.+.+ .+..+.
T Consensus 313 ---~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 313 ---SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred ---CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 23488899998763 57999999995 799999999999999998876655554444433 222222
Q ss_pred ---CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 419 ---GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 419 ---g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
.+.|...-.++++|+... ++... . .....++.+|+.+.+....
T Consensus 389 i~~r~lPdKaidlldea~a~~--~~~~~----------~--~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARA--RLMPV----------S--KRKKTVNVADIESVVARIA 434 (758)
T ss_pred ccCccChHHHHHHHHHHHHhh--ccCcc----------c--ccccccChhhHHHHHHHHh
Confidence 344556666777665431 11100 0 0012388888888887754
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=161.75 Aligned_cols=222 Identities=41% Similarity=0.595 Sum_probs=192.2
Q ss_pred cCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 239 KYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 239 ~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
.++..+... ..++++++++||||||||+++++++++ +..+..++..+...++.|.++...+..+..+....|+++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 344444433 678899999999999999999999999 666688899999999999999999999999999999999999
Q ss_pred CccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHH
Q 010888 318 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 318 EiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL 395 (498)
|+|.+.+.+.. ......+.+...++..+++.. ... +++++.||.+..+++++++ ||+..+.+..|+...+.+++
T Consensus 84 ~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 84 EIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred hhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999998876 344556788999999999998 666 8899999999999999998 99999999999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 396 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 396 ~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
...........+.++..++..+.|++++++..+++++...++++.. . .......++.+|+.++++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------~------~~~~~~~~~~~~~~~~l~~~~ 227 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------D------LVGEYIGVTEDDFEEALKKVL 227 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------c------cCcccccccHHHHHHHHHhcC
Confidence 9998888877788999999999999999999999999998888753 0 011122389999999999988
Q ss_pred CC
Q 010888 476 PS 477 (498)
Q Consensus 476 ps 477 (498)
|+
T Consensus 228 ~~ 229 (494)
T COG0464 228 PS 229 (494)
T ss_pred cc
Confidence 75
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=160.94 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=122.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
...++.+|++++|++.+++.|...+... ..++++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 4567889999999999999988876431 23467999999999999999999998864
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.++++.- ..-..++.+.+.+.. ....||+|||+|.+.. ..++
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-------------~a~~ 135 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-------------EAFN 135 (472)
T ss_pred HHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-------------HHHH
Confidence 3445544321 112334444444432 2346999999998842 2356
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.|+..++. ....+++|++|+.+..+++++++|+ ..+.|..++.++...+++..+....... +..++.|+..+.
T Consensus 136 ~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 136 ALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 67777763 2334666767777888999999999 5799999999999999988876544332 223444555444
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=156.77 Aligned_cols=152 Identities=24% Similarity=0.372 Sum_probs=111.7
Q ss_pred CCCCCCccccCcHHHHHH---HHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~---L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.++.++++++|++.+... +.+.+.. ....+++|+||||||||++|+++++.++.+++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 456889999999998666 7776632 123589999999999999999999999999999987643
Q ss_pred hhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-
Q 010888 289 SKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT- 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT- 363 (498)
....++.+++.+. .....||||||+|.+... .++.|+..++. ..+++|++|
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~-----~~iilI~att 128 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED-----GTITLIGATT 128 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc-----CcEEEEEeCC
Confidence 1233444554443 235689999999987432 34556666652 235555554
Q ss_pred -CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 364 -NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 364 -n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
|....+++++++|| ..+.++.++.++...+++..+..
T Consensus 129 ~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 129 ENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 33457899999999 67899999999999999987654
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=153.84 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=126.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
...++.+|++|+|++.+++.++..+.. ...++.+||+||||+|||++|+++|+.+.+.
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 356788999999999999999987743 1234678999999999999999999998642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++. ...-..++.+.+.+.. ....|++|||+|.+.. ...+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a~n 137 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HSFN 137 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HHHH
Confidence 22222211 0122335555554432 2346999999998842 2445
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++. ....+.+|.+|+.++.+.+++++|+ ..+.+++|+.++...+++..++......+ ..+..++..+.|
T Consensus 138 aLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G- 212 (363)
T PRK14961 138 ALLKTLEE---PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG- 212 (363)
T ss_pred HHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 67777763 2334666777777888999999999 56899999999999999988766543322 234555655554
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++..++.
T Consensus 213 ~~R~al~~l~ 222 (363)
T PRK14961 213 SMRDALNLLE 222 (363)
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=161.14 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=128.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|+..+.. ...++.+||+||||||||++|+.+|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 456789999999999999999998743 1234578999999999999999999998642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+++++++.- ..-..++.+.+.+. .....|++|||+|.|.. ...+
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-------------~a~n 137 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-------------HSFN 137 (509)
T ss_pred HHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-------------HHHH
Confidence 444444321 12233455554433 23346999999998853 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|+.++.++-...++..+.......+ ..+..+++.+.|
T Consensus 138 aLLk~LEep---p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 138 ALLKTLEEP---PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHHhcc---CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 334667777788888888999999 56888888888888888877766554422 234445555443
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++..++.
T Consensus 213 slR~al~lLd 222 (509)
T PRK14958 213 SVRDALSLLD 222 (509)
T ss_pred cHHHHHHHHH
Confidence 4444444443
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=160.43 Aligned_cols=186 Identities=18% Similarity=0.188 Sum_probs=130.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
+..++.+|++|+|++.+++.|...+.. ...++.+||+||+|||||++|+++|+.+++
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456789999999999999999988753 233468899999999999999999999865
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.+++++- ..-..++.+...+. ..+..|++|||+|.|.. ...+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-------------~A~N 136 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-------------HSFN 136 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-------------HHHH
Confidence 2344444321 12233455544432 23457999999998842 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+.......+ ..+..+++.+.|
T Consensus 137 ALLKtLEEP---P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 137 ALLKTLEEP---PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHHhcC---CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788887732 334667777888888889999999 66899999999999999888876655433 235556666554
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++.+++.
T Consensus 212 dLRdALnLLD 221 (702)
T PRK14960 212 SLRDALSLTD 221 (702)
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=148.91 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=120.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
...++.+|++++|++++++.|+..+.. ....++||+||||||||++|+++|+++. ..++.+++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 356788999999999999999887643 1124699999999999999999999972 34666776
Q ss_pred cccchhcccCcHHHHHHHHHHH-H------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcE
Q 010888 285 SSVVSKWRGDSEKLIKVLFELA-R------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 357 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a-~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v 357 (498)
++..+. ..++...... . ...+.|++|||+|.+... .++.|+..++... ...
T Consensus 73 sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~---~~t 130 (319)
T PLN03025 73 SDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYS---NTT 130 (319)
T ss_pred cccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhccc---CCc
Confidence 654221 1233322221 1 123579999999998532 3455666665332 224
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.+|.++|.+..+.+++++|+ ..+.|+.|+.++....++..++...... +..+..++....
T Consensus 131 ~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 131 RFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD 191 (319)
T ss_pred eEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 46678888888999999999 5689999999999999998886655442 223444555444
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=157.20 Aligned_cols=187 Identities=22% Similarity=0.253 Sum_probs=130.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|...+.. ...++.+||+||+|+|||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 346788999999999999999988743 1234568999999999999999999998652
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++.- ..-..++.+.+.+. .....|++|||+|.|. ....+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-------------~~a~N 137 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFN 137 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-------------HHHHH
Confidence 233333210 11223444444332 2345799999999884 34677
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|++.++. ....+.+|.+|+.+..|.+.+++|| ..+.|+.++.++-...|+.++.......+ ..+..+++.+.|
T Consensus 138 ALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G- 212 (647)
T PRK07994 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG- 212 (647)
T ss_pred HHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888873 3345667777888889999999998 77999999999999999888765544333 335556666665
Q ss_pred cHHHHHHHHHH
Q 010888 421 SGSDIRLVSKE 431 (498)
Q Consensus 421 s~~dL~~L~~~ 431 (498)
+.++...++..
T Consensus 213 s~R~Al~lldq 223 (647)
T PRK07994 213 SMRDALSLTDQ 223 (647)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=160.97 Aligned_cols=189 Identities=20% Similarity=0.218 Sum_probs=130.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---------- 279 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~---------- 279 (498)
++.++.+|++|+|++.+++.|+..+... +.++.+||+||||||||++|+++|+.+++.-
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 3567899999999999999999887431 2345679999999999999999999996531
Q ss_pred --------------EEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 280 --------------FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 280 --------------i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+.+++++ ...-..++.+.+.+. .....|+||||+|.|. ...++
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAqN 137 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSFN 137 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHHH
Confidence 1121110 011223444444333 2345799999999984 44677
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..|+. ....+++|.+|+.+..+.+.+++|| ..+.|+.++.++-...|+.++.......+ ..+..|++.+.|
T Consensus 138 ALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G- 212 (944)
T PRK14949 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG- 212 (944)
T ss_pred HHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888873 3344667777888888999999999 66899999999999888888765443322 235556666655
Q ss_pred cHHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEAA 433 (498)
Q Consensus 421 s~~dL~~L~~~A~ 433 (498)
+.+++..++..+.
T Consensus 213 d~R~ALnLLdQal 225 (944)
T PRK14949 213 SMRDALSLTDQAI 225 (944)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555554433
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=157.08 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=132.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
...++.++++|+|++.+++.+.+++..... ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 356778899999999999999998865331 233679999999999999999999999999999999887532
Q ss_pred hcccCcHHHHHHHHHHHHh------cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 290 KWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
...+..+...+.. ..+.+|+|||+|.+....+ +.....++..++. .. ..+|+++
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iIli~ 137 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPIILTA 137 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEEEec
Confidence 1223333332221 2467999999999864211 1233455555552 12 2356688
Q ss_pred CCCCCCCH-HHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHH
Q 010888 364 NLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 364 n~p~~Ld~-al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
|.+..+.+ .+++|+ ..+.|+.|+.++...+++..+.......+ ..++.|++.+.| |++.+++
T Consensus 138 n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain 201 (482)
T PRK04195 138 NDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIN 201 (482)
T ss_pred cCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 88888887 666677 67999999999999999998866655432 345666666554 5554444
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=156.62 Aligned_cols=225 Identities=21% Similarity=0.231 Sum_probs=143.5
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI 282 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v 282 (498)
+.+.-+.|+|.++..++|...+...+.. ..+...++|+|+||||||++++.+.+++ ...+++|
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 4455588999999999999988654421 2233345799999999999999998876 2567899
Q ss_pred eccccchhc----------------cc-CcHHHHHHHHHHHH--hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHH
Q 010888 283 SASSVVSKW----------------RG-DSEKLIKVLFELAR--HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 343 (498)
Q Consensus 283 ~~s~l~~~~----------------~G-~~~~~l~~~f~~a~--~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~L 343 (498)
||..+.... .| .....+..+|.... .....||+|||+|.|.... . ..|
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------Q---DVL 889 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------Q---KVL 889 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------H---HHH
Confidence 996543211 01 12334555665542 2335699999999996431 1 224
Q ss_pred HHHhhCCccCCCcEEEEEEeCC---CCCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC
Q 010888 344 LIQMDGLTQSDELVFVLAATNL---PWELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG 419 (498)
Q Consensus 344 l~~ld~~~~~~~~viVIaaTn~---p~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g 419 (498)
+..++........+.||+++|. +..|++++++||.. .+.|++++.+++..||+.++......
T Consensus 890 YnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gV-------------- 955 (1164)
T PTZ00112 890 FTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEI-------------- 955 (1164)
T ss_pred HHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCC--------------
Confidence 4444433334456888999986 45678899998864 48899999999999999998653111
Q ss_pred CcHHHHHHHHHHHH--hHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 420 YSGSDIRLVSKEAA--MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 420 ~s~~dL~~L~~~A~--~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+....|..+++.++ .+.+|+.+..++.+.++..+ ..|+.+|+.+|+..+..+
T Consensus 956 LdDdAIELIArkVAq~SGDARKALDILRrAgEikeg------skVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 956 IDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG------QKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC------CccCHHHHHHHHHHHHhh
Confidence 22222222222222 34555555555555443221 138899999888776443
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=146.78 Aligned_cols=179 Identities=21% Similarity=0.258 Sum_probs=118.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
.+..+.+|++++|++++++.|.+.+... ...+++|+||||||||++|+++++++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3456788999999999999999877431 123799999999999999999999883 35778888
Q ss_pred cccchhcc-------------cC-------cHHHHHHHHHHHHh-----cCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 285 SSVVSKWR-------------GD-------SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 285 s~l~~~~~-------------G~-------~~~~l~~~f~~a~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
+++..... +. ....++.+...... ..+.+|+|||+|.+... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------~ 141 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------A 141 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-------------H
Confidence 76532210 00 01223333322222 23469999999987432 2
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHh
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERT 417 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t 417 (498)
.+.|...++.... . ..+|.+++.+..+.+.+++|+ ..+.+.+|+.++...+++..+....... +..++.+++.+
T Consensus 142 ~~~L~~~le~~~~--~-~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 142 QQALRRIMEQYSR--T-CRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHhccC--C-CeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3345555553322 2 334556666667778899998 5689999999999999998876655442 22344455544
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=151.58 Aligned_cols=197 Identities=17% Similarity=0.292 Sum_probs=125.6
Q ss_pred CCCCCCcc-ccCcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~-IvG~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++ ++|.++ +...+.+....+ .....+++||||||||||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 45678999 556444 334444433221 1234579999999999999999999987 57789999
Q ss_pred ccccchhcccCcHH-HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+...... ....+.+..+ .+.+|+|||+|.+.+.. .....++..++.....+. .+||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~~~~~~~-~iiits 239 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE-----------RTQEEFFHTFNALHENGK-QIVLTS 239 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHHCCC-CEEEec
Confidence 88776543322111 1112222222 35799999999886431 123344555544322333 345555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
+..|.. +++.+++||. ..+.++.|+.++|..|++..+.......+ ..++.+|++..+ +.++|..++....
T Consensus 240 ~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 240 DRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred CCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 555543 6688999996 46899999999999999999877655433 345667776664 5667776665543
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=153.55 Aligned_cols=196 Identities=15% Similarity=0.274 Sum_probs=125.3
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++++ |..+ +...+++....+ ....++++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4667899854 5333 555555544321 1233579999999999999999999987 56788999
Q ss_pred ccccchhcccCcHHH-HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~-l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+....... ...+.+.. ..+.+|+|||+|.+..+. ..+..++..++.+...+. .+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~~~~~-~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY--RSVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALHEAGK-QIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH--hcCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHHCCC-cEEEEC
Confidence 988765544322211 11222222 246899999999885431 123345555544433333 345555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
+..|.. +++++++||. ..+.+..|+.++|..|++..+.......+ ..++.|+..+.| +.++|..++...
T Consensus 252 ~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 252 DRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred CCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 555544 7789999995 46889999999999999999876554422 335556666554 555665555544
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=150.99 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=127.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 278 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------------- 278 (498)
.|++|+|++.+++.|+..+.....+...+. ...++++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999876543322221 2346789999999999999999999987443
Q ss_pred ------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 279 ------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 279 ------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
+..+.+.. ....-..++.+++.+.. ....|++|||+|.|.. ...+.|+..++
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-------------~aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-------------RAANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-------------HHHHHHHHHhh
Confidence 11121110 11123346677766653 2346999999999843 24567888887
Q ss_pred CCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHH
Q 010888 349 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 428 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L 428 (498)
.. ... +++|.+|+.++.+.+.++||+ ..+.|+.|+.++...+|.... ... ......++..+.|..+..+..+
T Consensus 143 ep--~~~-~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP--PPR-TVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC--CCC-CeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 32 233 445555655889999999999 679999999999888886432 122 2335567788888777666554
Q ss_pred HH
Q 010888 429 SK 430 (498)
Q Consensus 429 ~~ 430 (498)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 44
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=153.96 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=133.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
+..++.+|++++|++.+++.|+..+.. ...++++||+||+|+|||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 356789999999999999999887643 234578999999999999999999997632
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++++++++- ..-..++.+.+.+.. ..+.|++|||+|.|. ....+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------~~A~N 134 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------NSAFN 134 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------HHHHH
Confidence 3455555422 123446666665542 235699999998874 23567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+.......+ ..+..+++.+.|
T Consensus 135 aLLK~LEeP---p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 135 ALLKTLEEP---APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHHhCC---CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 334667777788888999999999 56899999999999999988876655433 335556666654
Q ss_pred cHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEA 432 (498)
Q Consensus 421 s~~dL~~L~~~A 432 (498)
+.+++..+++.+
T Consensus 210 slR~alslLdql 221 (491)
T PRK14964 210 SMRNALFLLEQA 221 (491)
T ss_pred CHHHHHHHHHHH
Confidence 555555544443
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-15 Score=166.03 Aligned_cols=193 Identities=21% Similarity=0.319 Sum_probs=136.7
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 010888 205 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 275 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l--------- 275 (498)
..++.....+-++++++|++...+.+.+.+.. ....+++|+||||||||++|+.+|+.+
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l 241 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPAL 241 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccc
Confidence 34444445567899999999988877776532 223589999999999999999999987
Q ss_pred -CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 276 -KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 276 -~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+..++.++.+.+. ..+.|+.+..++.+++.+.. ..+.||||||++.+.+....... .+. .+.|...+.
T Consensus 242 ~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~----~n~Lkp~l~--- 313 (852)
T TIGR03345 242 RNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GDA----ANLLKPALA--- 313 (852)
T ss_pred cCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-ccH----HHHhhHHhh---
Confidence 3557888887765 36889999999999998864 45799999999999875432111 111 122333332
Q ss_pred cCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCC
Q 010888 352 QSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGY 420 (498)
Q Consensus 352 ~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-----~~~~l~~La~~t~g~ 420 (498)
+ +.+.+|+||+.. ..+|+++.|||. .+.++.|+.++...||+.+....... .+..+..++..+.+|
T Consensus 314 -~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 314 -R-GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred -C-CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 2 347788888753 348999999994 79999999999999987665433221 223355555655554
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-14 Score=144.69 Aligned_cols=171 Identities=22% Similarity=0.241 Sum_probs=117.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CeEEEE
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNI 282 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---------~~~i~v 282 (498)
.+.+..++++|.++.++.|...+...+. ...+.+++|+||||||||++++++++++. ..++++
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 3556677999999999999988754322 13346799999999999999999998762 578889
Q ss_pred eccccchh----------c---------ccC-cHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 283 SASSVVSK----------W---------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 283 ~~s~l~~~----------~---------~G~-~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+|....+. . .+. ..+....++.... ...+.||+|||+|.+.... ..++.
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~ 150 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLY 150 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHH
Confidence 98654321 1 011 1223344444443 3446799999999996221 11333
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCC---CCCHHHHhccc-ceeEecCCCHHHHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~---~Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
.++...+.....+.++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++.++.
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 34333211122335688889998875 48889988885 6689999999999999999875
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=165.10 Aligned_cols=177 Identities=21% Similarity=0.326 Sum_probs=133.1
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+...+.....+-.+++++|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~ 231 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 231 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchh
Confidence 444555555677899999999988888876633 223689999999999999999999988
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+.+++.++.+.+. .++.|..+..++.++..... ..++||||||+|.+.+..... ...+. .+.|...+
T Consensus 232 l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~----~~~lkp~l--- 303 (857)
T PRK10865 232 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDA----GNMLKPAL--- 303 (857)
T ss_pred hCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhH----HHHhcchh---
Confidence 6789999888765 46889999999999987543 568999999999998654322 11222 22222222
Q ss_pred ccCCCcEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC
Q 010888 351 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
.+ +.+.+|++|+..+ .+|+++.|||+ .+.++.|+.+++..||+.+.....
T Consensus 304 -~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 304 -AR-GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred -hc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 22 3477888887764 48999999996 588999999999999998765443
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=141.88 Aligned_cols=152 Identities=23% Similarity=0.367 Sum_probs=101.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l~ 288 (498)
-++.+++|++|++.+..+ ...+...++ .....+++||||||||||+|||.|+.....+ |+++++..
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ie--------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-- 200 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIE--------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-- 200 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHH--------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--
Confidence 456778888888876544 222211111 1223589999999999999999999988655 77777643
Q ss_pred hhcccCcHHHHHHHHHHHHh-----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 289 SKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
...+-++.+|+.++. ....|||||||+.+-. ..++.|+-.++ ++.|++|++|
T Consensus 201 -----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk-------------sQQD~fLP~VE-----~G~I~lIGAT 257 (554)
T KOG2028|consen 201 -----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK-------------SQQDTFLPHVE-----NGDITLIGAT 257 (554)
T ss_pred -----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-------------hhhhcccceec-----cCceEEEecc
Confidence 234567788887764 3458999999988742 23444554443 3346666555
Q ss_pred --CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHh
Q 010888 364 --NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 398 (498)
Q Consensus 364 --n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~ 398 (498)
|....|+.++++||.. +.+.....+.-..||.+-
T Consensus 258 TENPSFqln~aLlSRC~V-fvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 258 TENPSFQLNAALLSRCRV-FVLEKLPVNAVVTILMRA 293 (554)
T ss_pred cCCCccchhHHHHhccce-eEeccCCHHHHHHHHHHH
Confidence 5557899999999954 555555566666777663
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-14 Score=138.10 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=107.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+..+|++++|.++.. +...+... +.. .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKN------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHH------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4568899999766432 11111110 111 122468999999999999999999986 4455555553221
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
.....+++.. ....+|+|||++.+.++. .....++..++.....+..++|++++..|..
T Consensus 80 --------~~~~~~~~~~--~~~dlLilDDi~~~~~~~-----------~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 80 --------YFSPAVLENL--EQQDLVCLDDLQAVIGNE-----------EWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred --------hhhHHHHhhc--ccCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 1111222222 245799999999886432 1223345555444333444555555566665
Q ss_pred CC---HHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 369 LD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 369 Ld---~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
++ +.+++|+. ..+.++.|+.+++.+|++..+.......+ ..++.|+++..|
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 54 88999774 57789999999999999988865554433 234556665553
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=152.21 Aligned_cols=188 Identities=20% Similarity=0.234 Sum_probs=132.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++++|++.+++.|+..+.. ...++++||+||||||||++|+++|+.+++.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456789999999999999999886643 2335789999999999999999999998652
Q ss_pred -----------------EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHH
Q 010888 279 -----------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASR 337 (498)
Q Consensus 279 -----------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~ 337 (498)
+++++++. ......++.+++.+... ...|++|||+|.+..
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------- 142 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------- 142 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-------------
Confidence 12222111 12334566666666432 346999999988742
Q ss_pred HHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHH
Q 010888 338 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVER 416 (498)
Q Consensus 338 ~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~ 416 (498)
...+.|+..++. ....+++|.+|+.++.+.+.+++|+ ..+.++.++.++...+++..++......+ ..+..++..
T Consensus 143 ~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 143 GAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345667777763 3445677777888888999999999 56899999999999999999876655433 235556666
Q ss_pred hcCCcHHHHHHHHHHH
Q 010888 417 TEGYSGSDIRLVSKEA 432 (498)
Q Consensus 417 t~g~s~~dL~~L~~~A 432 (498)
+.| +.+++..+++.+
T Consensus 219 s~G-slR~al~~Ldka 233 (507)
T PRK06645 219 SEG-SARDAVSILDQA 233 (507)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 554 445554444443
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=156.61 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=130.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
++.++.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++|+.+|+.++++
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456789999999999999999998753 2334689999999999999999999988543
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++.+. ......++.+++.+.. ....|++|||+|.|. ....+
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-------------~~A~N 137 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-------------KSAFN 137 (709)
T ss_pred HHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------HHHHH
Confidence 12222211 1223445666654432 335799999998873 23456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~ 420 (498)
.|+..++. ....+.+|.+|+.+..+.+.+++|| ..+.|+.++.++....|+.++.......+. .+..|++.+.|
T Consensus 138 ALLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G- 212 (709)
T PRK08691 138 AMLKTLEE---PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG- 212 (709)
T ss_pred HHHHHHHh---CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-
Confidence 78888873 2344667778888889999999999 558888999999999999888766544322 34555555543
Q ss_pred cHHHHHHHHHH
Q 010888 421 SGSDIRLVSKE 431 (498)
Q Consensus 421 s~~dL~~L~~~ 431 (498)
+.+++..++..
T Consensus 213 slRdAlnLLDq 223 (709)
T PRK08691 213 SMRDALSLLDQ 223 (709)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=145.14 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=113.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
...++.+|++++|++.+++.+...+.. ...++.+||+||||+|||++|++++++.+.+++.+++++ +
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 456788999999999999999988742 123456777999999999999999999999999999876 2
Q ss_pred hcccCcHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 290 KWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
. .......+........ ...+.+|+|||+|.+... .....+...++.. ...+.+|++||.+..
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANNKNG 143 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCChhh
Confidence 1 1111122222211111 134689999999987221 1223344445432 233567889999999
Q ss_pred CCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 369 LDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 369 Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
+.+++++|| ..+.++.|+.+++..+++..+
T Consensus 144 l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 144 IIEPLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred chHHHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 999999999 468999999999988876543
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=138.75 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=122.9
Q ss_pred CCCCcccc--CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 214 DVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 214 ~~~~~~Iv--G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
..+|++++ +.+.+.+.+++++. .....+++|+||||||||++|+++++++ +.++++++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 45677776 36667888877652 1234789999999999999999999987 5788999988775
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
... ..++.... .+.+|+|||+|.+.... .....+...++.....+. .+|++++..+..
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCC-eEEEECCCChHH
Confidence 332 22222222 34699999999885421 012233333332222222 334444434433
Q ss_pred C--C-HHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 369 L--D-AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 369 L--d-~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
+ . +.+.+|+. ..+.++.|+.+++..+++.++...... ++...+..+.+ .|.++++++.+.
T Consensus 137 ~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--------------~~~~~l~~L~~-~~~gn~r~L~~~ 201 (226)
T TIGR03420 137 LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--------------LPDEVADYLLR-HGSRDMGSLMAL 201 (226)
T ss_pred CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHHH
Confidence 3 2 78888874 678899999999999998765433222 34444444444 355555555555
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
++.....+.. ..+.|+.+.+.+.|
T Consensus 202 l~~~~~~~~~----~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 202 LDALDRASLA----AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHH----hCCCCCHHHHHHHh
Confidence 4433321111 11237777776665
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=152.37 Aligned_cols=177 Identities=21% Similarity=0.271 Sum_probs=124.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 278 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---------- 278 (498)
....++.+|++|+|++.+++.|+..+.. ...++.+||+||||||||++|+++|+.+.+.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3456789999999999999999988754 1234567999999999999999999988531
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++.- ..-..++.+.+.+.. ..+.||+|||+|.+. +..++
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~n 134 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAFN 134 (504)
T ss_pred hhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHHH
Confidence 344443211 122334444443332 345799999998763 23456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++. ....+++|.+|+.+..+.+.+.+|+. .+.|+.|+.++....++..+.......+ ..+..++..+.|
T Consensus 135 aLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777763 23346677778888899999999994 6999999999999999988876554422 234445555443
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=149.55 Aligned_cols=177 Identities=23% Similarity=0.328 Sum_probs=119.3
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhc----cCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFT----GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~----~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
|+|++.+++.+...+....+...... ....+..++||+||||||||++|+++|+.++.||+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999877654332221110 11234578999999999999999999999999999999988753 56665
Q ss_pred cH-HHHHHHHHH----HHhcCCeEEEEcCccchhhhccccchhhHH-HHHHHHHHHHHhhCCc----------cCCCcEE
Q 010888 295 SE-KLIKVLFEL----ARHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLT----------QSDELVF 358 (498)
Q Consensus 295 ~~-~~l~~~f~~----a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~----------~~~~~vi 358 (498)
.. ..+..++.. .....++||||||+|.+...........+. ...+++.|+..|++-. ....+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 33 334444432 223467999999999998763221111111 2357788999997531 1112344
Q ss_pred EEEEeCCCC----------------------------------------------------CCCHHHHhcccceeEecCC
Q 010888 359 VLAATNLPW----------------------------------------------------ELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 359 VIaaTn~p~----------------------------------------------------~Ld~al~~Rf~~~i~~~~P 386 (498)
+|.|+|-.. .+.|++..|++..+.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 555554410 1467777789888899999
Q ss_pred CHHHHHHHHH
Q 010888 387 DTEARRAMFE 396 (498)
Q Consensus 387 d~~eR~~IL~ 396 (498)
+.++...|+.
T Consensus 313 ~~~~L~~Il~ 322 (412)
T PRK05342 313 DEEALVRILT 322 (412)
T ss_pred CHHHHHHHHH
Confidence 9999888887
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=137.80 Aligned_cols=204 Identities=13% Similarity=0.153 Sum_probs=124.4
Q ss_pred CCCCCCccccC--cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 212 SPDVKWESIKG--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~IvG--~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.++.+|+++++ ...+...+.++.. ......+++|+||+|||||++|+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 34577999773 4556666665442 12344689999999999999999999976 67888888876
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+... +. ....+.+|+|||+|.+... .+..++..++........+++++++..|
T Consensus 81 ~~~~------------~~--~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 81 PLLA------------FD--FDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred hHHH------------Hh--hcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 5321 11 1223579999999987422 1233444444333333333444444333
Q ss_pred --CCCCHHHHhcc--cceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 367 --WELDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 367 --~~Ld~al~~Rf--~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
..+.+.+.+|| ...+.+++|+.+++..+++......... ++...+..+.+ .|.++++.+.+
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--------------l~~~al~~L~~-~~~gn~~~l~~ 198 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--------------LADEVPDYLLT-HFRRDMPSLMA 198 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHH
Confidence 23568888888 4678999999988888888765443322 33334444444 45555555554
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
.++.....+. ...++||...++++|.
T Consensus 199 ~l~~l~~~~~----~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 199 LLDALDRYSL----EQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHH----HhCCCCCHHHHHHHHh
Confidence 4443221110 1124589999888886
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=155.22 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=128.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 3567889999999999999999987541 234678999999999999999999998641
Q ss_pred ------------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHH
Q 010888 279 ------------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 279 ------------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
++.++++.- ..-..++.+.+.+.. ....|++|||+|.|..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~------------ 138 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN------------ 138 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH------------
Confidence 223322210 122345555554432 2346999999998843
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHH
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVE 415 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~ 415 (498)
...+.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|+.++.++....|+..+.......+. .+..|++
T Consensus 139 -~a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~ 213 (618)
T PRK14951 139 -TAFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR 213 (618)
T ss_pred -HHHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 245667777763 3344667777788888888899999 668999999999999998887665554332 3555666
Q ss_pred HhcCCcHHHHHHHH
Q 010888 416 RTEGYSGSDIRLVS 429 (498)
Q Consensus 416 ~t~g~s~~dL~~L~ 429 (498)
.+.| +.+++..++
T Consensus 214 ~s~G-slR~al~lL 226 (618)
T PRK14951 214 AARG-SMRDALSLT 226 (618)
T ss_pred HcCC-CHHHHHHHH
Confidence 5554 444444443
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=134.70 Aligned_cols=185 Identities=14% Similarity=0.120 Sum_probs=112.4
Q ss_pred CCCCCCcccc-C-cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 212 SPDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~Iv-G-~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.+..+|++++ | ...+...+.+.... ....+++|+||||||||++++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4567788887 4 45566666654321 123589999999999999999999876 44566666544
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.... ...+.+.... ..+|+|||++.+..+. .....+...++.....+...+++++++.|
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----------~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----------LWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----------HHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 3211 1122222222 2689999999885431 12223333333322223223455555666
Q ss_pred CC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHH
Q 010888 367 WE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 367 ~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
.. +.+.+++|+. ..+.+..|+.+++.++++..+.......+ .-++.|+++..+ +.+.+..++.
T Consensus 143 ~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~ 211 (235)
T PRK08084 143 RQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLD 211 (235)
T ss_pred HHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 54 5799999995 67889999999999999986665544322 234556665553 3444444444
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-14 Score=158.48 Aligned_cols=186 Identities=20% Similarity=0.155 Sum_probs=127.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
++.++.+|++|+|++.+++.|+..+.. ....+.+||+||+|||||++|+.+|+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 456788999999999999999988743 1233568999999999999999999999642
Q ss_pred ---------------EEEEeccccchhcccCcHHHHHHHHHHH----HhcCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 279 ---------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 279 ---------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
++.++.... ..-..++.+.+.+ ......|+||||+|.|. ...
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-------------~~a 136 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-------------PQG 136 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-------------HHH
Confidence 222222111 0122233333222 23455799999999984 335
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~ 418 (498)
.+.|++.|+.. ...+++|.+|+.++.|.+.+++|+ ..+.|..++.++...+|+..+.......+. .+..+++...
T Consensus 137 ~NaLLK~LEEp---P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 137 FNALLKIVEEP---PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67788888743 334667777788888889999999 668999999999999998888665544332 2444555554
Q ss_pred CCcHHHHHHHHH
Q 010888 419 GYSGSDIRLVSK 430 (498)
Q Consensus 419 g~s~~dL~~L~~ 430 (498)
| +.+++..+++
T Consensus 213 G-dlR~Al~eLE 223 (824)
T PRK07764 213 G-SVRDSLSVLD 223 (824)
T ss_pred C-CHHHHHHHHH
Confidence 4 4444444443
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=154.30 Aligned_cols=188 Identities=19% Similarity=0.219 Sum_probs=129.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|...+.. ...++.+||+||||+|||++|+.+|+.+++.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 346678999999999999999988753 1334678999999999999999999998652
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++. ......++.+.+.+.. ....|++|||+|.+.. ...+
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a~n 137 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SAFN 137 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HHHH
Confidence 22222211 1123345666655532 2346999999998842 3456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|+.++.++-...+...+.......+ ..+..+++.+.|
T Consensus 138 aLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G- 212 (527)
T PRK14969 138 AMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG- 212 (527)
T ss_pred HHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 78888874 3344667777777888888899999 66999999999988888887765544332 234555655554
Q ss_pred cHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEA 432 (498)
Q Consensus 421 s~~dL~~L~~~A 432 (498)
+.+++..++..+
T Consensus 213 slr~al~lldqa 224 (527)
T PRK14969 213 SMRDALSLLDQA 224 (527)
T ss_pred CHHHHHHHHHHH
Confidence 444544444433
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=153.07 Aligned_cols=165 Identities=23% Similarity=0.301 Sum_probs=125.0
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------h--
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------S-- 289 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~-- 289 (498)
+|-.|++++|+++.+++...... ....++-+.|+||||+|||.++++||+.+|+.|++++...+. +
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 36789999999999988552211 123345678999999999999999999999999999875443 2
Q ss_pred -hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC------------CccCCCc
Q 010888 290 -KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDEL 356 (498)
Q Consensus 290 -~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~------------~~~~~~~ 356 (498)
.|+|.....+-+.++......| +++|||+|.+...-+... .++||+.+|- +.-.-..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP---------asALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP---------ASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh---------HHHHHHhcChhhccchhhhccccccchhh
Confidence 3677777776666777666654 888999999984333221 2335555542 1122346
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
|++|||+|..+.++++|++|+ +.|+++-+..++...|.+.++
T Consensus 555 VLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999999999 679999999999999999887
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=151.28 Aligned_cols=187 Identities=22% Similarity=0.244 Sum_probs=131.1
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 277 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~----------- 277 (498)
.+..++.+|++++|++.+++.|+..+.. ...++.+||+||+|||||++|+.+|+.+.+
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3557789999999999999999998754 233467999999999999999999998853
Q ss_pred -------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 278 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 278 -------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
.++.++++. +..-..++.+.+.+.. ..+.|++|||+|.|.. ...
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a~ 136 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GAF 136 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHH
Confidence 233333321 1233445666665542 3356999999998842 245
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
+.|+..++. ....+++|.+|+.++.+.+.+++|+. .+.|+.|+.++....++..+.......+ ..+..++..+.|
T Consensus 137 naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 137 NALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 677777763 33346667677788899999999994 5889999999999999988876654433 234556665554
Q ss_pred CcHHHHHHHHH
Q 010888 420 YSGSDIRLVSK 430 (498)
Q Consensus 420 ~s~~dL~~L~~ 430 (498)
+.++...++.
T Consensus 213 -~~R~al~~Ld 222 (559)
T PRK05563 213 -GMRDALSILD 222 (559)
T ss_pred -CHHHHHHHHH
Confidence 4444444333
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=148.61 Aligned_cols=187 Identities=19% Similarity=0.159 Sum_probs=126.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 456788999999999999999998753 1334568999999999999999999988642
Q ss_pred ---------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 279 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 279 ---------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
++.++++.. ..-..++.+.+.+. .....|++|||+|.|.. ..
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-------------~A 134 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-------------AG 134 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-------------HH
Confidence 222222111 01233344433332 23456999999998842 35
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~ 418 (498)
.+.|+..++. ....+++|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++.......+. .+..++..+.
T Consensus 135 ~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~ 210 (584)
T PRK14952 135 FNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG 210 (584)
T ss_pred HHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6778888873 3345677777788889999999998 669999999999888888887765543332 2333444333
Q ss_pred CCcHHHHHHHHHH
Q 010888 419 GYSGSDIRLVSKE 431 (498)
Q Consensus 419 g~s~~dL~~L~~~ 431 (498)
-+.+++.++++.
T Consensus 211 -GdlR~aln~Ldq 222 (584)
T PRK14952 211 -GSPRDTLSVLDQ 222 (584)
T ss_pred -CCHHHHHHHHHH
Confidence 344444444443
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-14 Score=150.65 Aligned_cols=175 Identities=16% Similarity=0.207 Sum_probs=120.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
...++.+|++++|++.+++.|...+.. ...++.+||+||+|||||++|+.+|+.+.+
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 346678999999999999999987743 123456899999999999999999998854
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.+++..- ..-..++.+.+.+. .....|++|||+|.+. ....+
T Consensus 77 ~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-------------~~a~n 137 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-------------KQSFN 137 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-------------HHHHH
Confidence 2333332111 11123344444333 2345799999998884 23567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 418 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~ 418 (498)
.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..++|..++.++-...++..+.......+ ..+..++..+.
T Consensus 138 aLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 138 ALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 78888874 2334556666677888888899999 67999999999988888887766544322 22444555444
|
|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-16 Score=154.14 Aligned_cols=360 Identities=19% Similarity=0.182 Sum_probs=206.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcccccccCCCCCccccchhhHHHHHhhhhhhc-------cccCcCCCCCCC-CCCCC
Q 010888 68 TERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKK-------IKEPEKGEITER-PVSDG 139 (498)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~g 139 (498)
-||+. +.+.+||.++.+-++-+|.++.+.- -|-+..+.||++. +..+.++-+... ...++
T Consensus 75 seR~h--------l~L~aLL~al~~pVlsvd~kg~v~~----aNpAa~~l~~~~~~~~~g~~~~~l~~~~nf~~~l~~~~ 142 (511)
T COG3283 75 SEREH--------LALSALLEALPEPVLSVDMKGKVDM----ANPAACQLFGRKEDRLRGHTAAQLINGFNFLRWLEGEP 142 (511)
T ss_pred chhHh--------HHHHHHHHhCCCceEEecccCceee----cCHHHHHHhCCChhhhcCccHHHhcCcCCHHHHHhcCC
Confidence 47777 7899999999999999999999988 6778889999854 222221111100 11111
Q ss_pred CCCCCCCCcccCCChhhHHHHhhhhcCCCc-ccchhHHHHHHHHhhcCCCCCCcchHHHHHHHHHhhhhhhcCCCCCCCc
Q 010888 140 SSLNSNGHVQNTSDMAVYEQYRTQFQGSGS-TCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWE 218 (498)
Q Consensus 140 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 218 (498)
.......-+..+.+.-.--.+...+-++.. ...+..+.-+...+.. +.+ .....++...|+
T Consensus 143 ~~~~~~~V~~~gq~~lmeitPv~~~~~~~e~~lagav~~L~~~~r~g----------------e~~--~~~~~~~~~~F~ 204 (511)
T COG3283 143 QRSHNEHVVINGQNFLMEITPVYLQDENDEHVLAGAVVMLRSTNRMG----------------EQL--QNVAAQDVSGFE 204 (511)
T ss_pred CcCCCceEEEcchhheeeccceeecCCcchhheeheeeeehhhhhHH----------------HHH--hhcccccccchH
Confidence 111111111111111100001111111110 1111111000010000 000 012234567799
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW---- 291 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~---- 291 (498)
.|++.+..++.+.+.... ...-...+||.|.+||||.++|++.+..+ ..||+.+||+.+....
T Consensus 205 ~~v~~S~~mk~~v~qA~k----------~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 205 QIVAVSPKMKHVVEQAQK----------LAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESE 274 (511)
T ss_pred HHhhccHHHHHHHHHHHH----------hhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHH
Confidence 999999888888776533 23334679999999999999999999877 6899999998775432
Q ss_pred -ccCc--HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc--------CCCcEEEE
Q 010888 292 -RGDS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELVFVL 360 (498)
Q Consensus 292 -~G~~--~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~viVI 360 (498)
.|.. .+....+|+.|.+ +.+|+|||..+.+. ++..|+..+..-+. -..+|.||
T Consensus 275 lFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 275 LFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred HhcCCCCCCCccchhhhccC---CeEEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcceEEEEEEEE
Confidence 1211 2334567877766 56999999887544 56667777653221 12369999
Q ss_pred EEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHHHH
Q 010888 361 AATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRLVS 429 (498)
Q Consensus 361 aaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~L~ 429 (498)
+||..+- .+-..+.-|. ..+.+.+|...+|..-+.-.+ +.-+..+++. ...+++.-+..+.
T Consensus 339 catq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~-------e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 339 CATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLA-------ELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred ecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHH-------HHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 9997741 1223333455 446777777666653221111 1112222222 2347777888899
Q ss_pred HHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh--HHHHHHHHHHhchhcc
Q 010888 430 KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH--AHRYEKFNADYGSEIL 497 (498)
Q Consensus 430 ~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~--~~~~~~~~~~~g~~~~ 497 (498)
++.|++++|++.|.+.++..+.++.. ++.+|+.-+.-...+...++ ...+++..+.|..+|+
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~Eg~~------l~i~~i~Lp~~~~~~~~~~~~~~gsLdei~~~fE~~VL 474 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLLEGYE------LRIEDILLPDYDAATVVGEDALEGSLDEIVSRFERSVL 474 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHhccCc------cchhhcccCCcccccccchhhccCCHHHHHHHHHHHHH
Confidence 99999999999999988877666555 66777654444333332222 2455556666655554
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=156.19 Aligned_cols=152 Identities=22% Similarity=0.346 Sum_probs=106.6
Q ss_pred CCCCCCCccccCcHHHHH---HHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 211 GSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~---~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..++.+|++++|++.+.. .+++.+.. ....+++|+||||||||++|+++++.++.+++.+++...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 345788999999999885 45554422 223589999999999999999999999999998887532
Q ss_pred chhcccCcHHHHHHHHHHHH-----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 288 VSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~-----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
. .+.++..+..+. .....+|||||+|.+... .++.|+..++. ..+++|++
T Consensus 89 ~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~-----g~IiLI~a 143 (725)
T PRK13341 89 G-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVEN-----GTITLIGA 143 (725)
T ss_pred h-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhcC-----ceEEEEEe
Confidence 1 112233333221 134579999999988432 23455555542 23556655
Q ss_pred eC-C-CCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcC
Q 010888 363 TN-L-PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 363 Tn-~-p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
|+ . ...+++++++|+ ..+.+++++.++...+++..+.
T Consensus 144 TTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 144 TTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred cCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 53 3 356889999997 5689999999999999998875
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=161.73 Aligned_cols=178 Identities=20% Similarity=0.344 Sum_probs=132.3
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+...+.....+-.++.++|.+...+.+.+.+.. ....+++|+||||||||++|++++..+
T Consensus 159 ~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~ 226 (852)
T TIGR03346 159 YARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPES 226 (852)
T ss_pred HhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchh
Confidence 444555555677899999999988888876633 233688999999999999999999986
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+.+++.++.+.+. .++.|..+..++.++..+.. ..+.||||||+|.+.+....... .+ ..+.|...+
T Consensus 227 l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-~d----~~~~Lk~~l--- 298 (852)
T TIGR03346 227 LKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-MD----AGNMLKPAL--- 298 (852)
T ss_pred hcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-hH----HHHHhchhh---
Confidence 6788888887775 46888999999999998865 35899999999999764322111 11 222222222
Q ss_pred ccCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC
Q 010888 351 TQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 404 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 404 (498)
. .+.+.+|++|+.. ..+|+++.+||. .+.++.|+.+++..||+.+......
T Consensus 299 -~-~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 299 -A-RGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred -h-cCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 2 3347788888765 347999999995 5899999999999999987655443
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=163.92 Aligned_cols=195 Identities=18% Similarity=0.283 Sum_probs=140.6
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+.+++......-.+++++|.++..+.+.+.+.. ...++++|+||||||||++|+.+|.++
T Consensus 165 ~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 165 FGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred HHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 445555555567799999999999999988743 234689999999999999999999987
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+.+++.++++.+. .+|.|+.+..++.+++.+....+.||||||+|.+.+....... .+ +.+.|...+.
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~----~a~lLkp~l~--- 304 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-ID----AANILKPALA--- 304 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-cc----HHHHhHHHHh---
Confidence 4789999998776 4678999999999999998878899999999999875432111 11 2222222222
Q ss_pred cCCCcEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC----CCCC-CCCCHHHHHHHhcCCc
Q 010888 352 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS----QTGE-ESLPYDLLVERTEGYS 421 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~----~~~~-~~~~l~~La~~t~g~s 421 (498)
+ +.+.+|++|+..+ ..++++.+||. .+.++.|+.++...|++..... +... .+..+..++..+.+|.
T Consensus 305 -r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 305 -R-GELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred -C-CCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 2 3467788887653 47899999995 5889999999999998865421 1111 2223555566665543
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-14 Score=144.40 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=122.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++++|++.+++.+.+.+.. ...++.+||+||||+|||++|+++++.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35678999999999999999987743 2334679999999999999999999987432
Q ss_pred ------------EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 279 ------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 279 ------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
++.+++.. ......++.+++.+... .+.|++|||+|.+.. ...+.
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------~~~~~ 136 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------SAFNA 136 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------HHHHH
Confidence 23333221 11233456666655432 346999999988842 23556
Q ss_pred HHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 343 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 343 Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
++..++. ....+++|.+|+.+..+.+.+++|+ ..+.++.|+.++...+++.+++......+ ..+..++..+.|
T Consensus 137 Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEE---PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHhC---CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777763 2334667777888888889999999 56899999999999999988876554322 234445555544
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-14 Score=148.19 Aligned_cols=196 Identities=18% Similarity=0.321 Sum_probs=121.6
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++++ |..+ +...+.+....+ ....+++||||||+|||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~-----------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP-----------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc-----------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5678899987 6433 333333332111 113579999999999999999999986 46788999
Q ss_pred ccccchhcccCcH-HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~-~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+..... ..+.. |.......+.+|+|||++.+.+.. .....++..++.+...+. .+|+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~-----------~~q~elf~~~n~l~~~~k-~iIits 234 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT-----------GVQTELFHTFNELHDSGK-QIVICS 234 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH-----------HHHHHHHHHHHHHHHcCC-eEEEEC
Confidence 8877655432111 11112 222222357899999999885431 122334444443333333 445555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
...|.. +.+.+.+||. ..+.+.+|+.++|..|++..+.......+ ..++.|++...+ +.++|..++...
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 566654 5678888984 46788999999999999999876544433 235556666554 556666655543
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=132.93 Aligned_cols=191 Identities=21% Similarity=0.265 Sum_probs=136.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
...+.+++++|.+..|+.|.+....++. ..|.+++||||++|||||++++++.++. |..++.|...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4568899999999999999998866543 3567899999999999999999999987 7889999887763
Q ss_pred hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC-CccCCCcEEEEEEeCCC
Q 010888 289 SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 366 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~viVIaaTn~p 366 (498)
.+..+++..+. ..+-|||+||+. + .. . ..--..|-..++| +...+.+|+|.+|+|+-
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs-F--e~----~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS-F--EE----G-----DTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC-C--CC----C-----cHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 23445555443 245799999973 1 10 0 1122345555665 46778889999999875
Q ss_pred CCCC-----------------------HHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhc
Q 010888 367 WELD-----------------------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTE 418 (498)
Q Consensus 367 ~~Ld-----------------------~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~----La~~t~ 418 (498)
..++ -+|..||...+.|..|+.++-.+|++.++.......+. .+.. .|..-.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 3211 13445999999999999999999999999777665442 2322 233345
Q ss_pred CCcHHHHHHHHHH
Q 010888 419 GYSGSDIRLVSKE 431 (498)
Q Consensus 419 g~s~~dL~~L~~~ 431 (498)
|.||+--.+.++.
T Consensus 232 ~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 232 GRSGRTARQFIDD 244 (249)
T ss_pred CCCHHHHHHHHHH
Confidence 6777766555543
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-14 Score=150.39 Aligned_cols=164 Identities=25% Similarity=0.248 Sum_probs=125.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------h---
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------S--- 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~--- 289 (498)
|-.|++.+|+++.+++....... .....-++|+||||+|||.|++.||+.+++.|+.++...+. +
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 56899999999999886533211 11224578999999999999999999999999999875443 2
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC------------ccCCCcE
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 357 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~v 357 (498)
.|+|.....+-+-+..+....| +++|||||.|..+-+... .++||..+|-- .-.-..|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh---------HHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 3777777777666777777665 888999999987643321 23455555411 1122469
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
++|+|+|..+.++.+|++|+ +.|++.-++.++..+|.+.++
T Consensus 468 mFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 99999999999999999999 679999999999999999887
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=134.05 Aligned_cols=195 Identities=21% Similarity=0.312 Sum_probs=119.8
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G--~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.|+.+|++++ | .+.+...+......+ ......++||||+|+|||+|.+++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 4678999985 5 344555555543321 1223569999999999999999999875 57789999
Q ss_pred ccccchhcccCcHH-HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+...... .+..+.+.. ....+|+|||++.+..+ ...+..++..++.+...+. .+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k-~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK-QLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC-eEEEEe
Confidence 88876554322111 111222222 24579999999998643 3355667777766555544 445655
Q ss_pred eCCCCC---CCHHHHhcccc--eeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 431 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~~--~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~ 431 (498)
...|.. +++.+.+||.. .+.+..|+.++|..|++..+.......+.+ ++.|+++.. -+.++|..+++.
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~ 211 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNR 211 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHH
Confidence 566654 67899999854 678889999999999999998877765444 344555544 456666655554
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=150.24 Aligned_cols=176 Identities=19% Similarity=0.202 Sum_probs=121.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
...++.+|++|+|++.+++.|...+... .-..++||+||||||||++|+.+|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 3467889999999999999999887431 223689999999999999999999998653
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++..- ..-..++.+.+.+. .....||+|||+|.|. ...++
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-------------~~a~n 137 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-------------REAFN 137 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------HHHHH
Confidence 333433211 01122333322222 2345799999999884 23457
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..+.|+.++.++...+|+..+.......+ ..++.+++.+.|
T Consensus 138 aLLk~LEEP---~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 138 ALLKTLEEP---PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHhhcc---CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788887742 234677778888888888999999 46899999999999888887765544322 234445555543
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=149.63 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=123.6
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 277 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~----------- 277 (498)
....++.+|++++|++.+++.+...+.. ...++++||+||+|+|||++|+++|+.+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456789999999999999999987643 233478999999999999999999998843
Q ss_pred -------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 278 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 278 -------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
.++.++++.. ..-..++.+...+.. ....|++|||+|.|.. ...
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-------------~A~ 136 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-------------SAW 136 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-------------HHH
Confidence 2233332211 122335555544432 2346999999998842 245
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g 419 (498)
+.|+..++. ....+++|.+|+.+..+.+.+++|+. .+.|+.|+.++....++..+....... +..+..++..+.|
T Consensus 137 NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 137 NALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888873 23346677777888899999999994 689999999999999988876554332 2234455555554
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=151.88 Aligned_cols=193 Identities=19% Similarity=0.218 Sum_probs=130.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE---ecc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI---SAS 285 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v---~~s 285 (498)
.+..++.+|++|+|++.+++.|+..+.. ...++.+||+||+|+|||++|+++|+.+.++-... .|.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 3456789999999999999999998754 13346789999999999999999999886531100 010
Q ss_pred cc---ch---h---ccc---CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC
Q 010888 286 SV---VS---K---WRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 349 (498)
Q Consensus 286 ~l---~~---~---~~G---~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 349 (498)
.. .+ . ..+ .....++.+.+.+.. ....|++|||+|.|.. ...+.|+..++.
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-------------~A~NALLKtLEE 144 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-------------SAFNALLKTLEE 144 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-------------HHHHHHHHHhhc
Confidence 00 00 0 001 123446666665543 3456999999998842 246678888873
Q ss_pred CccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHH
Q 010888 350 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLV 428 (498)
Q Consensus 350 ~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L 428 (498)
....+++|.+|+.++.+.+.+++|+ ..+.|..++.++....|+..+.......+. .+..++..+.| +.+++..+
T Consensus 145 ---PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 ---PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred ---CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3344667777888889999999999 479999999999999998877665544332 24556665554 33444333
Q ss_pred HH
Q 010888 429 SK 430 (498)
Q Consensus 429 ~~ 430 (498)
+.
T Consensus 220 Le 221 (725)
T PRK07133 220 AE 221 (725)
T ss_pred HH
Confidence 33
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=146.97 Aligned_cols=248 Identities=26% Similarity=0.323 Sum_probs=162.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hccc-C
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G-~ 294 (498)
-|+|++++|+.+...+.....+....... ..+++++||+||||||||++|+++|..++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 48999999999988776532222111111 224589999999999999999999999999999999987763 5666 4
Q ss_pred cHHHHHHHHHHH--------------------------------------------------------------------
Q 010888 295 SEKLIKVLFELA-------------------------------------------------------------------- 306 (498)
Q Consensus 295 ~~~~l~~~f~~a-------------------------------------------------------------------- 306 (498)
.+..++.+|..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 555555554443
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q 010888 307 -----------------------------------------------------------------------RHHAPSTIF 315 (498)
Q Consensus 307 -----------------------------------------------------------------------~~~~p~VL~ 315 (498)
+....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012347999
Q ss_pred EcCccchhhhccccchhhHH-HHHHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhcccceeEe
Q 010888 316 LDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILV 383 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~~~i~~ 383 (498)
|||+|+++...... ..++ ..-++..||..++|-.. ...++++|++. ..|.+|-|.+.-||...+.+
T Consensus 253 iDEiDKIa~~~~~~--~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESS--GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCC--CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence 99999998764211 1122 23478889999987422 23468888776 35777899999999999999
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhchh----
Q 010888 384 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEGRQ---- 448 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g----~s~~dL~~L~~~A~~~-------a~rrl~~~le~~~---- 448 (498)
..++.++...||..--... -..+..+- .+.| |+...++.+.+.|... -+|++..+++..-
T Consensus 331 ~~L~~edL~rILteP~nsL----ikQy~~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSL----IKQYKALM-KTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred CCCCHHHHHHHhcCChhHH----HHHHHHHH-hhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 9999999998885311000 00001111 1222 7788888888888752 2466666665432
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 449 EVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 449 ~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
..+++... ....|+.+.+...+...
T Consensus 406 fe~p~~~~-~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 406 FEAPDLSG-QNITIDADYVSKKLGAL 430 (441)
T ss_pred hcCCCCCC-CEEEECHHHHHhHHHHH
Confidence 22333222 22347887777766643
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-13 Score=139.84 Aligned_cols=227 Identities=21% Similarity=0.225 Sum_probs=141.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEecccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSV 287 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l 287 (498)
+....+.++|.++..+++...+..... ...+.+++|+||||||||++++.+++++ +..+++++|...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 445567899999999999888744321 1234679999999999999999999987 577899998643
Q ss_pred ch----------hcc-------cC-cHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 288 VS----------KWR-------GD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 288 ~~----------~~~-------G~-~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
.+ ... +. .......+.+.... ..+.||+|||+|.+..... ...+..++..++
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~ 167 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHE 167 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhh
Confidence 21 111 11 12233333333332 3468999999999972111 123444555544
Q ss_pred CCccCCCcEEEEEEeCCCC---CCCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHhcCCc
Q 010888 349 GLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTG---EESLPYDLLVERTEGYS 421 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~---~Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~---~~~~~l~~La~~t~g~s 421 (498)
... ..++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++.++..... -.+..++.+++.+.+.+
T Consensus 168 ~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 168 EYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred ccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 332 23577888888763 47888888874 56899999999999999988753211 12223455566553322
Q ss_pred HHHHH---HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 422 GSDIR---LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 422 ~~dL~---~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+|++ .++..|+..+..+ + ...|+.+|+..|+..+.++
T Consensus 246 -Gd~r~a~~ll~~a~~~a~~~------~------------~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 246 -GDARVAIDLLRRAGLIAERE------G------------SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred -CcHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHHHHH
Confidence 2333 3444444433221 0 0137888888888776443
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-13 Score=131.79 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=127.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------eEEEEe
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TFFNIS 283 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------~~i~v~ 283 (498)
....+.+|++++|++.+++.|+..+.. ....++|||||||||||+.|+++|+++.. .+...+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 345678899999999999999998743 22358999999999999999999999955 345556
Q ss_pred ccccchhcccCcHHHHHHHHHHHHh---------cC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARH---------HA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 353 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~---------~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 353 (498)
+++-.+..++ ..+++. |..... .+ +-|++|||.|.|..+ .+..|...|+..
T Consensus 96 aSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~--- 156 (346)
T KOG0989|consen 96 ASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMEDF--- 156 (346)
T ss_pred ccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhcc---
Confidence 6665554332 111211 222111 11 259999999999643 566777888754
Q ss_pred CCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcC
Q 010888 354 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEG 419 (498)
Q Consensus 354 ~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g 419 (498)
...+.+|..||.++.+...+.+|+.. +.|+....+.-...|+.++.+.....+.+ ++.+++.++|
T Consensus 157 s~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred ccceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 33467888999999999999999955 67777777777778888887777765543 5666666655
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=148.62 Aligned_cols=198 Identities=21% Similarity=0.192 Sum_probs=132.9
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc----
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---- 292 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~---- 292 (498)
|+|.+...+.+.+.+.. ......+|||+|++||||+++|++|+..+ +.||+.++|+.+.....
T Consensus 1 liG~S~~m~~~~~~~~~----------~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSR----------LAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHH----------HhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 57888888888877644 23445789999999999999999999877 47999999987643211
Q ss_pred -cCc-------HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------ccCCCc
Q 010888 293 -GDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 356 (498)
Q Consensus 293 -G~~-------~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~ 356 (498)
|.. .......+..+ ..++|||||++.|... ++..|+..++.- .....+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 110 00011223333 3478999999998644 445566655432 112345
Q ss_pred EEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----h-cCCcHHH
Q 010888 357 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----T-EGYSGSD 424 (498)
Q Consensus 357 viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t-~g~s~~d 424 (498)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|.+-+..++.. -+..++.. . .++++..
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~-------fl~~~~~~~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEH-------FAIRMARELGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHH-------HHHHHHHHhCCCCCCCcCHHH
Confidence 7889998764 234566777774 3677888888877644443321 11222222 2 4689999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
+..|.++.|++++|++.+.++......
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 999999999999999999998776544
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=150.76 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=125.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+.+++.+|++|+|++.+++.|...+.. ...++.+||+||+|+|||++|+++|+.+.+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 456789999999999999999988743 1334678999999999999999999998542
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++++++..- ..-..++.+.+.+.. ....|++|||+|.|.. ...+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-------------~a~n 137 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-------------NAFN 137 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-------------HHHH
Confidence 233332211 122345555554432 2346999999998842 3467
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..|+. ....+++|.+|+.++.+.+.+++|+ ..+.|..++.++-...++..++......+ ..+..+++.+.|
T Consensus 138 aLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 138 ALLKTLEE---PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 78888873 3344677778888899999999999 56899999998888888887766554422 234555665554
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=142.91 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=121.2
Q ss_pred CCCCCCcccc-CcHHH--HHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 212 SPDVKWESIK-GLENA--KRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~~--k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.|..+|++++ |..+. ...+.+....+.. ....+.++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 5678899987 54433 3344443322110 001233679999999999999999999977 6888999887
Q ss_pred ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 286 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
++...+...........|.... ..+.+|+|||++.+.++. ..+..++..++.+...+ ..+|++++..
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-----------~~qeelf~l~N~l~~~~-k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-----------ATQEEFFHTFNSLHTEG-KLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-----------hhHHHHHHHHHHHHHCC-CcEEEecCCC
Confidence 7654433221111111233222 346899999999885431 12233444444332222 2444544444
Q ss_pred CC---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 010888 366 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 366 p~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~A 432 (498)
|. .+++++++||. ..+.+..|+.++|..||+..+.......+.+ ++.++....+ +.++|...+...
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 53 46789999995 6778888999999999999887765443333 4446665553 344454444433
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=144.55 Aligned_cols=196 Identities=15% Similarity=0.235 Sum_probs=124.5
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++++ |..+ +...+...+.. .....+.++|||++|+|||+|+++|++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEA----------PAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhC----------ccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3567899886 4333 23333333221 11223459999999999999999999987 56889999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
+.++...+...........|... -..+++|+|||++.+..+. .....|+..++.+...+..+ || |+
T Consensus 352 aeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke-----------~tqeeLF~l~N~l~e~gk~I-II-TS 417 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE-----------STQEEFFHTFNTLHNANKQI-VL-SS 417 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-----------HHHHHHHHHHHHHHhcCCCE-EE-ec
Confidence 98877665432222111223222 2346899999999986542 22344555555443333333 34 55
Q ss_pred CCC-C---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 010888 364 NLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 364 n~p-~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~A 432 (498)
|.+ . .+++.|++||. ..+.+..|+.+.|..||+..+....+....+ ++.|+.+..+ +.++|..++...
T Consensus 418 d~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 418 DRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred CCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 543 3 47889999994 5568888999999999999988776654433 4556666553 556666655543
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=148.49 Aligned_cols=186 Identities=17% Similarity=0.170 Sum_probs=126.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++|+|++.+++.|+..+.. ...++.+||+||+|+|||++|+++|+.+.+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456789999999999999999998753 1234679999999999999999999998642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+. ....+
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-------------~~a~n 137 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-------------NSAFN 137 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------HHHHH
Confidence 12222110 011233444443332 2345799999999883 23566
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++. ....+++|.+|+.+..+.+++++|+. .+.|..++.++...+++..+.......+ ..+..++..+.|
T Consensus 138 aLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 138 ALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77877763 33456677777778889999999995 5899999999999999887765544322 234455555554
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++..++.
T Consensus 213 dlR~alslLd 222 (563)
T PRK06647 213 SVRDAYTLFD 222 (563)
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=151.82 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=146.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch---------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--------- 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~--------- 289 (498)
++.|++.+|+.+.+++....... ......++|+||||+|||++++.+|+.++.+++.++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 48999999999998876432211 123346999999999999999999999999999998765432
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC------------ccCCCcE
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 357 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~v 357 (498)
.+.|.....+...+..+.... .||+|||+|.+....+. ...+.|+..++.- ...-..+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 244444444444454444334 48999999999765321 1234566666521 1122568
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-----CCC-C-----CCCHHHHHHH-hcCCcHHHH
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-----TGE-E-----SLPYDLLVER-TEGYSGSDI 425 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-----~~~-~-----~~~l~~La~~-t~g~s~~dL 425 (498)
++|+|+|.. .+++++++|| ..+.+..++.++..+|.+.++... ... . +..++.+++. +..+-.+.|
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 899999887 5999999999 568999999999999998887311 111 1 1113334432 223344666
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 426 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 426 ~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
+..++......+.+... .+. . ....|+.+++.+.|..-
T Consensus 545 eR~I~~i~r~~l~~~~~--~~~--------~-~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 545 EREISKLCRKAVKQLLL--DKS--------L-KHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHh--cCC--------C-ceeeecHHHHHHHhCCC
Confidence 66666544444433221 100 0 11248999999988743
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-14 Score=146.38 Aligned_cols=244 Identities=26% Similarity=0.362 Sum_probs=162.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hccc-C
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G-~ 294 (498)
.|+|++++|+.+..++............. ...+.++||+||||||||++|+++|+.++.+|+.++++.+.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 49999999999998875532222111111 122479999999999999999999999999999999987774 5777 3
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 010888 295 SEKLIKVLFELAR------------------------------------------------------------------- 307 (498)
Q Consensus 295 ~~~~l~~~f~~a~------------------------------------------------------------------- 307 (498)
.+..++.++..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4455555554440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 010888 308 -----------------------------------------------------------------------HHAPSTIFL 316 (498)
Q Consensus 308 -----------------------------------------------------------------------~~~p~VL~I 316 (498)
....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cCccchhhhccccchhhHHH-HHHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhcccceeEec
Q 010888 317 DEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP 384 (498)
Q Consensus 317 DEiD~l~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~~~i~~~ 384 (498)
||||+++...+.. ..+++ .-++..||..++|-.. +..++++||+. ..|.+|-|.+..||...+.+.
T Consensus 256 DEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 9999998764321 12222 3478889999987421 23468888775 456778899999999999999
Q ss_pred CCCHHHHHHHHHH----hcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhchhc
Q 010888 385 LPDTEARRAMFES----LLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEGRQE 449 (498)
Q Consensus 385 ~Pd~~eR~~IL~~----~l~~~~~~~~~~l~~La~~t~g----~s~~dL~~L~~~A~~~-------a~rrl~~~le~~~~ 449 (498)
.++.++...||.. .++.. ..+-+ ++| |+...|+.+.+.|... -+|++..+++..-.
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy--------~~Lf~-~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQY--------QALLA-TEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHH--------HHHHh-hcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 9999999988853 11110 01110 122 7788888888888763 24666666664421
Q ss_pred ----cCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 450 ----VAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 450 ----~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
.+++... ....|+.+-+...+..+
T Consensus 405 d~~Fe~p~~~~-~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 405 DISFEAPDMSG-ETVTIDAAYVDEKLGDL 432 (443)
T ss_pred HHhccCCCCCC-CEEEECHHHHHHHHHHH
Confidence 2233221 22347777776666543
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=144.68 Aligned_cols=172 Identities=20% Similarity=0.256 Sum_probs=111.7
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 275 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------- 275 (498)
+.+....++.+|++++|++..++.+.+.+.. ..+.+++|+||||||||++|+.+++..
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~ 209 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE 209 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence 3344445678999999999999988766532 223579999999999999999998765
Q ss_pred CCeEEEEeccccch-------hcccCcHHH----HHHHHH----------HHHhcCCeEEEEcCccchhhhccccchhhH
Q 010888 276 KTTFFNISASSVVS-------KWRGDSEKL----IKVLFE----------LARHHAPSTIFLDEIDAIISQRGEARSEHE 334 (498)
Q Consensus 276 ~~~~i~v~~s~l~~-------~~~G~~~~~----l~~~f~----------~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 334 (498)
+.+|+.+++..+.. .+.|..... .+..+. .......++|||||++.|...
T Consensus 210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------- 280 (615)
T TIGR02903 210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------- 280 (615)
T ss_pred CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH---------
Confidence 35789999876521 111111000 000010 011223579999999988543
Q ss_pred HHHHHHHHHHHHhhCCc-------------------------cCCCcEEEE-EEeCCCCCCCHHHHhcccceeEecCCCH
Q 010888 335 ASRRLKTELLIQMDGLT-------------------------QSDELVFVL-AATNLPWELDAAMLRRLEKRILVPLPDT 388 (498)
Q Consensus 335 ~~~~i~~~Ll~~ld~~~-------------------------~~~~~viVI-aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~ 388 (498)
.+..|+..++.-. .....+++| +||+.++.+++++++||. .+++++++.
T Consensus 281 ----~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~ 355 (615)
T TIGR02903 281 ----LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTP 355 (615)
T ss_pred ----HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCH
Confidence 2333444443210 011224444 456678889999999995 578888999
Q ss_pred HHHHHHHHHhcCCCC
Q 010888 389 EARRAMFESLLPSQT 403 (498)
Q Consensus 389 ~eR~~IL~~~l~~~~ 403 (498)
++...|++..+....
T Consensus 356 edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 356 EDIALIVLNAAEKIN 370 (615)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999876543
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=145.21 Aligned_cols=176 Identities=22% Similarity=0.272 Sum_probs=120.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
...++.+|++++|++.+++.|+..+.. ...++.+||+||+|+|||++|+.+|+.+++.
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 346788999999999999999988743 1234568999999999999999999988531
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+.. ...+
T Consensus 77 ~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-------------~a~n 137 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-------------EAFN 137 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-------------HHHH
Confidence 12221111 0112234444444432 3357999999998742 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g 419 (498)
.|+..++.. ...+++|.+|+.++.+.+++.+|+. .+.|+.|+.++...+++.+++......+. .+..++..+.|
T Consensus 138 aLLk~LEep---p~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 138 ALLKTLEEP---PPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHHhcC---CCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 677777632 2335556666777788889999994 68999999999999999988766544322 34445555443
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=141.58 Aligned_cols=179 Identities=25% Similarity=0.359 Sum_probs=119.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh------ccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYF------TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KW 291 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~------~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~ 291 (498)
-++|++++++.+...+....+..... .+......++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 47999999999987764322221110 001122468999999999999999999999999999999887653 46
Q ss_pred ccCc-HHHHHHHHHHH----HhcCCeEEEEcCccchhhhccccchhhHH-HHHHHHHHHHHhhCCcc----------CCC
Q 010888 292 RGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----------SDE 355 (498)
Q Consensus 292 ~G~~-~~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~----------~~~ 355 (498)
+|.. +..+...+..+ ....++||||||+|.+.+++.......++ ...+++.|++.++|... +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 34444444322 23457899999999998754322111111 12577888888876421 123
Q ss_pred cEEEEEEeCCCC--------------------------------------------------CCCHHHHhcccceeEecC
Q 010888 356 LVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 356 ~viVIaaTn~p~--------------------------------------------------~Ld~al~~Rf~~~i~~~~ 385 (498)
+.++|.|+|-.. .+.|+++.|++.++.|.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 456777776510 044677778888888888
Q ss_pred CCHHHHHHHHHH
Q 010888 386 PDTEARRAMFES 397 (498)
Q Consensus 386 Pd~~eR~~IL~~ 397 (498)
.+.++...|+..
T Consensus 318 L~~~~L~~Il~~ 329 (413)
T TIGR00382 318 LDEEALIAILTK 329 (413)
T ss_pred CCHHHHHHHHHH
Confidence 899998888865
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-14 Score=153.73 Aligned_cols=218 Identities=20% Similarity=0.233 Sum_probs=141.8
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 290 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~ 290 (498)
..+|++++|.+..++.+.+.+.. ......+|||+|++||||+++|++|++.+ +.||+.+||+.+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~----------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRL----------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHH----------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 47799999999999999988754 23445789999999999999999999876 579999999876432
Q ss_pred -----cccCc--------HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc------
Q 010888 291 -----WRGDS--------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 351 (498)
Q Consensus 291 -----~~G~~--------~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 351 (498)
..|.. ......+|+.+. .++|||||++.|... ++..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCC
Confidence 11110 011223444444 368999999998654 4555666654321
Q ss_pred --cCCCcEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHH----HhcCCCCCCCCCCHHHHHHHhc
Q 010888 352 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFE----SLLPSQTGEESLPYDLLVERTE 418 (498)
Q Consensus 352 --~~~~~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~----~~l~~~~~~~~~~l~~La~~t~ 418 (498)
....++.+|++|+.+- .+.+.+..|+ ..+.+.+|+..+|.+-+. +++..... ....
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~----------~~~~ 410 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAA----------ALRL 410 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHH----------HcCC
Confidence 1123467898988742 1333444455 346778888888775333 33322110 0012
Q ss_pred CCcHHHHHH-------HHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 419 GYSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 419 g~s~~dL~~-------L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
++++..+.. |.++.|++++|++.+.++.......... ...|+.+|+...+
T Consensus 411 ~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~---~~~I~~~~l~~~~ 467 (526)
T TIGR02329 411 PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMP---AGALTPDVLRALA 467 (526)
T ss_pred CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCC---CCccCHHHhhhhc
Confidence 467777766 9999999999999999998765432110 1237888865443
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=156.62 Aligned_cols=207 Identities=23% Similarity=0.247 Sum_probs=132.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH--------h---CCeEEEEe
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--------C---KTTFFNIS 283 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~--------l---~~~~i~v~ 283 (498)
..|++|+|.+..++.+++.+.. ......+|||+|++||||+++|++|++. + +.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~----------~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL----------YARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------HhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5799999999999999988754 2344578999999999999999999988 3 67999999
Q ss_pred ccccchh-----cccCcH--------HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 284 ASSVVSK-----WRGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 284 ~s~l~~~-----~~G~~~--------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
|+.+... ..|..+ .....+|+.+. .++|||||++.|... ++..|+..++.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 9876432 111110 11123455444 368999999998654 445566665432
Q ss_pred --------ccCCCcEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHH----HHHhcCCCCCCCCCCHH
Q 010888 351 --------TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAM----FESLLPSQTGEESLPYD 411 (498)
Q Consensus 351 --------~~~~~~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~I----L~~~l~~~~~~~~~~l~ 411 (498)
.....++.+|++||..- .+.+.+..|+ ..+.+.+|...+|.+- +++++..........
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 11223578999998741 1223344455 3467788888887753 333332210000000
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 412 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 412 ~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
+.....++....+..|.++.|++++|++.+.+++.....
T Consensus 427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 111112233345578999999999999999998765543
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-13 Score=146.86 Aligned_cols=192 Identities=18% Similarity=0.144 Sum_probs=128.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS------ 283 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~------ 283 (498)
...++.+|++|+|++.+++.|...+.. ...++++||+||+|+|||++|+.+|+.+.+.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 345678999999999999999988743 234578999999999999999999999865321111
Q ss_pred -------ccccchh-------c---ccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 284 -------ASSVVSK-------W---RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 284 -------~s~l~~~-------~---~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
|..+... . ....-..++.+.+.+.. ....|++|||+|.|. ....+.
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------~~a~na 151 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------TAAFNA 151 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------HHHHHH
Confidence 1000000 0 00123345666665543 235799999998884 234667
Q ss_pred HHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCc
Q 010888 343 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYS 421 (498)
Q Consensus 343 Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s 421 (498)
|+..++.. ...+.+|.+|+.++.+.+.+++|+ ..+.|+.++.++...+++..+.......+ ..++.++..+.| +
T Consensus 152 LLKtLEeP---p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 152 LLKTLEEP---PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HHHHHHhC---CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887732 334566667777777888899999 56999999999999999988876655433 234445555554 4
Q ss_pred HHHHHHHHH
Q 010888 422 GSDIRLVSK 430 (498)
Q Consensus 422 ~~dL~~L~~ 430 (498)
.+++..++.
T Consensus 227 lr~al~~Ld 235 (598)
T PRK09111 227 VRDGLSLLD 235 (598)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=143.98 Aligned_cols=189 Identities=19% Similarity=0.188 Sum_probs=128.6
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
...++.+|++++|++.+++.|+..+.. ...++.+||+||+|+|||++|+++++.+.+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 346788999999999999999988743 133456799999999999999999998732
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.++++.- ..-..++.+...... ....|++|||+|.|. ...++
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-------------~~A~N 135 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-------------KEAFN 135 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHHH
Confidence 1333332210 012345555443321 223699999999884 33567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+++++|+ ..++|..++.++-...++..+...+...+ ..+..++....|
T Consensus 136 ALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 136 ALLKTLEEP---PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHHhhc---CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 334566667777889999999998 57899999999988888888766554432 234455555544
Q ss_pred cHHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEAA 433 (498)
Q Consensus 421 s~~dL~~L~~~A~ 433 (498)
+.+++..+++.+.
T Consensus 211 dlR~alnlLdqai 223 (535)
T PRK08451 211 SLRDTLTLLDQAI 223 (535)
T ss_pred cHHHHHHHHHHHH
Confidence 4455555544433
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=139.13 Aligned_cols=202 Identities=20% Similarity=0.178 Sum_probs=136.6
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh--
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-- 290 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~-- 290 (498)
.+++++|.+...+.+.+.+... .....+|||+|++||||+++|++|+... +.||+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3678999999999998887542 3445789999999999999999999876 479999999876421
Q ss_pred ---cccCcH-------HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 291 ---WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 291 ---~~G~~~-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
..|... ......+..+ ..++|||||+|.|... ++..|+..++.-. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 111110 0011223333 3478999999998644 4555666664321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH-----hcCC
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER-----TEGY 420 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~-----t~g~ 420 (498)
...++.||++|+.. ..+.+.+..||. .+.+.+|...+|.+-+..++.. -+..++.. ..++
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~-------fl~~~~~~~~~~~~~~~ 209 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEH-------FAIQMCRELGLPLFPGF 209 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHH-------HHHHHHHHhCCCCCCCC
Confidence 12247888888764 235677777884 3677788888876644333211 11222222 2478
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 421 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 421 s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
++..+..|.++.|++++|++.+.++......
T Consensus 210 s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 210 TERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998766543
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-13 Score=140.70 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=120.2
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++|+|++.+++.|...+.. ...++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 45678999999999999999988743 1334679999999999999999999988432
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++... . .-..++.+.+... ...+.|++|||+|.+.. ...+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-------------~~~n 139 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-------------EAFN 139 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-------------HHHH
Confidence 222222111 0 1122333222221 24568999999998842 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..++|+.++.++....++..++..+...+ ..+..++..+.|
T Consensus 140 ~LLk~lEep---~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEP---PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcC---CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888742 334667777788888999999999 56899999999988888887765544322 234555555543
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-13 Score=137.96 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=120.8
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA------ 284 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~------ 284 (498)
..++.+|++++|++.+++.+.+.+.. ...++++|||||||+|||++|+++++.+..+.....+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 46788999999999999999988754 1334689999999999999999999988542211100
Q ss_pred -cccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 285 -SSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 285 -s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
.++. .........++.+++.+.. ..+.||+|||+|.+.. ...+.++..++. .....++
T Consensus 79 ~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-------------~~~~~ll~~le~---~~~~~~~ 141 (367)
T PRK14970 79 IFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-------------AAFNAFLKTLEE---PPAHAIF 141 (367)
T ss_pred eEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-------------HHHHHHHHHHhC---CCCceEE
Confidence 0110 0011123455566665432 2357999999987742 234567666653 2233456
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
|.+|+.+..+.+++.+|+ ..+.++.|+.++...++...+....... +..++.++..+.
T Consensus 142 Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 142 ILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred EEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 666777788999999999 4689999999999988888776655432 233455555544
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-14 Score=154.82 Aligned_cols=220 Identities=18% Similarity=0.182 Sum_probs=144.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 289 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~ 289 (498)
+..+|++++|.+...+++.+.+... .....+|||+|++||||+++|++|++.+ +.||+.++|+.+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3567999999999888888877542 3345679999999999999999999977 47999999987642
Q ss_pred h-----cccCc----HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 290 K-----WRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 290 ~-----~~G~~----~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
. ..|.. .......|+. ...++|||||++.|... ++..|+..++.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1 22211 0000112222 23578999999998654 4455666654321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH---hcCCcH
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER---TEGYSG 422 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~---t~g~s~ 422 (498)
...++.+|+||+.. ..+.+.+.-|+ ..+.+.+|...+|.+-+..++.. -+..++.. ..++++
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~-------~l~~~~~~~~~~~~~s~ 525 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNN-------KLRSLEKRFSTRLKIDD 525 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHH-------HHHHHHHHhCCCCCcCH
Confidence 11257789998874 12344444455 34778888888886533333211 12222222 125899
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 423 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
..+..|.++.|++++|++.+.++......+.. .|+.+|+...+.
T Consensus 526 ~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~------~i~~~~lp~~~~ 569 (638)
T PRK11388 526 DALARLVSYRWPGNDFELRSVIENLALSSDNG------RIRLSDLPEHLF 569 (638)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHhCCCC------eecHHHCchhhh
Confidence 99999999999999999999999866544332 277777766553
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-13 Score=138.54 Aligned_cols=182 Identities=17% Similarity=0.181 Sum_probs=117.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE--------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-------- 281 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~-------- 281 (498)
...++.+|++|+|++.+++.|+..+.. ...++.+||+||||+|||++|+++|+.+.+.-..
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 346788999999999999999887743 1334679999999999999999999999652100
Q ss_pred --Eeccc------cc-------hhccc---CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 282 --ISASS------VV-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 282 --v~~s~------l~-------~~~~G---~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
-.|.. +. ..+.+ ..-..++.+.+.+.. ....|++|||+|.+.. ..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------------~~ 143 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------------AA 143 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-------------HH
Confidence 01100 00 00111 112344554444421 2346999999998842 23
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.+.|+..++. .....++|.+|+.+..+.+.+++|+. .++|+.++.++-...++..++...... +..++.++..+.
T Consensus 144 ~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 144 FNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4567777763 22335555566677788889999994 689999999888888888776544332 223444555554
Q ss_pred C
Q 010888 419 G 419 (498)
Q Consensus 419 g 419 (498)
|
T Consensus 220 g 220 (397)
T PRK14955 220 G 220 (397)
T ss_pred C
Confidence 3
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-14 Score=156.28 Aligned_cols=213 Identities=25% Similarity=0.280 Sum_probs=142.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+..++++++|.+...+++.+.+... .....+|||+|++||||+++|++|+..+ +.||+.++|+.+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34578999999999999999887542 3445789999999999999999999986 5799999998764
Q ss_pred hhc-----ccCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-----
Q 010888 289 SKW-----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----- 351 (498)
Q Consensus 289 ~~~-----~G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----- 351 (498)
... .|.... .....+.. ...++|||||++.|... .+..|+..++.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence 321 111000 00111222 23478999999998644 4555666664321
Q ss_pred ---cCCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh
Q 010888 352 ---QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 417 (498)
Q Consensus 352 ---~~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~t 417 (498)
....++.+|++|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++. .++...
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~-----------~~~~~~ 391 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLE-----------KFNREN 391 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHH-----------HHHHHc
Confidence 111247888888764 224556666663 35666777666654 3333332 222211
Q ss_pred ---cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 010888 418 ---EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 468 (498)
Q Consensus 418 ---~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~ 468 (498)
.++++..+..|.++.|++++|++.+.++.......+.. |+.+|+.
T Consensus 392 ~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~~~------I~~~~l~ 439 (534)
T TIGR01817 392 GRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGT------ITRSDFS 439 (534)
T ss_pred CCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc------ccHHHCc
Confidence 36899999999999999999999999998765544332 7777764
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-13 Score=148.70 Aligned_cols=205 Identities=20% Similarity=0.224 Sum_probs=137.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-----hccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWRG 293 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-----~~~G 293 (498)
.|+|++++++.+.+.+....... .....|..++||+||||||||.+|+++|+.++.+++.++++++.. ...|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 47999999999999886532110 111234457999999999999999999999999999999987642 2222
Q ss_pred CcHHH-----HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--cc------CCCcEEEE
Q 010888 294 DSEKL-----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------SDELVFVL 360 (498)
Q Consensus 294 ~~~~~-----l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~~~~viVI 360 (498)
..... -..+.+..+....+||||||+|.+.+ .+.+.|+..++.- .. .-.++++|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-------------HHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 11111 11233344555669999999999853 3677788887632 11 12457889
Q ss_pred EEeCCC-------------------------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC-------CCCCCCC
Q 010888 361 AATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTGEESL 408 (498)
Q Consensus 361 aaTn~p-------------------------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~-------~~~~~~~ 408 (498)
+|||.- ..+.|+++.|++.++.|++.+.++...|+...+.. .......
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~ 682 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEV 682 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceE
Confidence 999832 12668999999999999999999999998766532 1222111
Q ss_pred ---CHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 409 ---PYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 409 ---~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.++.|++.. ..+-.+.|+.+++.-....+.+
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 234455432 2345677777777666666554
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=130.23 Aligned_cols=134 Identities=25% Similarity=0.293 Sum_probs=93.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc------cchhcccCcHHHH-H-------------------HHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKLI-K-------------------VLFE 304 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~------l~~~~~G~~~~~l-~-------------------~~f~ 304 (498)
..++||.||||||||++|+++|+.+|.+++.++|.. +.+.+.+...... . ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 468999999999999999999999999999998753 3333322211111 1 0111
Q ss_pred HHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-------------cCCCcEEEEEEeCCCC----
Q 010888 305 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------------QSDELVFVLAATNLPW---- 367 (498)
Q Consensus 305 ~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------------~~~~~viVIaaTn~p~---- 367 (498)
.|.. .+.+|+|||++.+.++ +++.|+..++.-. ....+..||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 3469999999987533 4555666664311 0113567899999762
Q ss_pred -CCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 368 -ELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 368 -~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
.+++++++|| ..+.++.|+.++..+|++.+.
T Consensus 167 ~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 5789999999 678999999999999999875
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=132.37 Aligned_cols=175 Identities=25% Similarity=0.244 Sum_probs=116.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
....+.+|++++|++++++.+...+... ...+++|+||||||||++++++++++. ..++.+++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 3456789999999999999999887431 123689999999999999999999873 34555554
Q ss_pred cccchhcccCcHHHHHHHH-HHHHh-----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 285 SSVVSKWRGDSEKLIKVLF-ELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f-~~a~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
++..+ ...++..+ ..+.. ..+.+|+|||+|.+... ..+.|...++.... ...
T Consensus 77 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~~~ 134 (319)
T PRK00440 77 SDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---NTR 134 (319)
T ss_pred ccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---CCe
Confidence 43211 11122222 22211 23469999999988432 23445556654322 244
Q ss_pred EEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcC
Q 010888 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 419 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g 419 (498)
+|.++|.+..+.+++.+|+. .+.+++++.++...+++.++....... +..++.+++.+.|
T Consensus 135 lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 135 FILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred EEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 56677777788888999985 589999999999999998887655432 2234555555443
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.2e-13 Score=140.32 Aligned_cols=169 Identities=13% Similarity=0.200 Sum_probs=110.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccccchhcccCcHH---HHHHHHHHHHhcCCeEEEEcCccch
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~~~G~~~~---~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
.++++|||++|+|||+|++++++++ +..++++++.++...+...... .+...... -..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3579999999999999999999965 4788899998877665433221 12222122 234679999999988
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC---CCCHHHHhccc--ceeEecCCCHHHHHHHHHH
Q 010888 323 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE--KRILVPLPDTEARRAMFES 397 (498)
Q Consensus 323 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~ 397 (498)
..+ ....+.|+..++.....+. .+|+++...|. .+++++.+||. ..+.+..|+.++|.+|++.
T Consensus 219 ~~k-----------~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYK-----------EKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCC-----------HHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 543 2234455555554443333 33443333443 36789999995 5567788999999999999
Q ss_pred hcCCCCC---CCCCCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010888 398 LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 398 ~l~~~~~---~~~~~l~~La~~t~g~s~~dL~~L~~~A~~ 434 (498)
.++.... -.+..++.|+..+.| +.+.+..++.....
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 9876543 122234556666654 56667666665543
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=148.34 Aligned_cols=204 Identities=21% Similarity=0.199 Sum_probs=138.3
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 291 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~- 291 (498)
.+.+++|.+..++.+.+.+.. ....+.+|||+|++||||+++|++|+..+ +.||+.++|+.+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 578999999999999988754 34456789999999999999999999986 5799999998774321
Q ss_pred ----ccCcH-------HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------cc
Q 010888 292 ----RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 352 (498)
Q Consensus 292 ----~G~~~-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~ 352 (498)
.|... ......++.+ ..++|||||+|.|... ++..|+..++.- ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 11100 0011233333 3478999999999654 444555555421 11
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHH----HhcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~----~t~g~s 421 (498)
...++.+|++|+.. ..+.+.+..|+. .+.+.+|+..+|.+-+..++.. -+..++. ...+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~-------fl~~~~~~~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGY-------FLEQNRARLGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHH-------HHHHHHHHcCCCCCCCC
Confidence 22357899999874 124555655663 4677888888887543332211 1222232 224689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+..+..|.++.|++++|++.+.++.....+..
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999887654443
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=133.64 Aligned_cols=229 Identities=19% Similarity=0.244 Sum_probs=141.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----EEEEecccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSV 287 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~-----~i~v~~s~l 287 (498)
+...-+.+.+.++..+++...+...+. ...|.+++++||||||||.+++.+++++..+ +++|||...
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 344455689999999999987655432 2334569999999999999999999998433 899999665
Q ss_pred chhc---------------ccCcH-HHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 288 VSKW---------------RGDSE-KLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 288 ~~~~---------------~G~~~-~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
.+.+ .|... .....+++.... ....||+|||+|.|....+ .+ |+..+...
T Consensus 84 ~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~---LY~L~r~~ 150 (366)
T COG1474 84 RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EV---LYSLLRAP 150 (366)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hH---HHHHHhhc
Confidence 4321 12222 223333333333 4467999999999976522 23 33333322
Q ss_pred ccCCCcEEEEEEeCCCC---CCCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHhcCCcHHH
Q 010888 351 TQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEE--SLPYDLLVERTEGYSGSD 424 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p~---~Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~~--~~~l~~La~~t~g~s~~d 424 (498)
......+.+|+.+|..+ .+++.+.+++. ..+.|++++.+|...|++.+........ +.+.-.++....+..
T Consensus 151 ~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~--- 227 (366)
T COG1474 151 GENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAE--- 227 (366)
T ss_pred cccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHc---
Confidence 22355688999999873 58999999773 5589999999999999999986543222 122222222211112
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
.+.+|+.+..+..+.+++..+..+. ++.+++..|...+.+.
T Consensus 228 ---------~GDAR~aidilr~A~eiAe~~~~~~---v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 228 ---------SGDARKAIDILRRAGEIAEREGSRK---VSEDHVREAQEEIERD 268 (366)
T ss_pred ---------CccHHHHHHHHHHHHHHHHhhCCCC---cCHHHHHHHHHHhhHH
Confidence 2233444444444444433333322 7778877775555443
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-12 Score=123.96 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=100.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
.+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC---
Confidence 679999999999999999999865 6778888887765321 122223332 368999999987543
Q ss_pred cchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCC
Q 010888 329 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
......|+..++.....+ ..++++++..|.. ..+.+++||. ..+.+..|+.+++..+++..+....
T Consensus 113 --------~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 113 --------ADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------hHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 122344555555443333 3556666655533 4689999994 5566788999999999996655443
Q ss_pred CCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 404 GEE-SLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 404 ~~~-~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
... +..++.|+++..+ +.+.+..++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 322 2234445555443 4444444443
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-14 Score=146.66 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=135.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVV 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~ 288 (498)
....+++++|.+...+++.+.+.. ..+...+|||+|++||||+++|+.|+... +.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 345689999999999999888754 34556789999999999999999998654 5799999998764
Q ss_pred hh-------------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC------
Q 010888 289 SK-------------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------ 349 (498)
Q Consensus 289 ~~-------------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~------ 349 (498)
.. +.| .......+|+.|.+ ++||+|||..+++. .+..|+..++.
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRV 205 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhCCHh-------------HHHHHHHHHHcCceEec
Confidence 32 222 22223445665554 68999999999765 33445555543
Q ss_pred --CccCCCcEEEEEEeCCCCCCCHHHHh------cccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh
Q 010888 350 --LTQSDELVFVLAATNLPWELDAAMLR------RLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 417 (498)
Q Consensus 350 --~~~~~~~viVIaaTn~p~~Ld~al~~------Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~t 417 (498)
-.....+|.+|+||+. .++.+++. |. ..+.+.+|+..+|.. ++++++.........+ .
T Consensus 206 G~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~-------~ 275 (403)
T COG1221 206 GGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLP-------L 275 (403)
T ss_pred CCCCCcCCCceeeecccc--CHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCC-------C
Confidence 2334557999999987 44544444 23 345667787777754 3333332211111100 1
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 418 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 418 ~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
...++..++.|..+.|++++|++.|.++......
T Consensus 276 ~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 276 SVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred CCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 2234667888999999999999999888776544
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=151.71 Aligned_cols=203 Identities=23% Similarity=0.281 Sum_probs=137.5
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 290 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~ 290 (498)
+..|++++|.+..++.+.+.+... .....+|||+|++|||||++|++|+..+ +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 467889999999999998877542 3345689999999999999999999876 579999999876422
Q ss_pred -----cccC--------cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC-------
Q 010888 291 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------- 350 (498)
Q Consensus 291 -----~~G~--------~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------- 350 (498)
..|. ... ....++.+ ..++|||||++.+... ++..|+..++.-
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~-~~g~le~a---~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQ-RIGRFELA---DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccc-hhhHHHhc---CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1111 111 12233333 3478999999998644 445555555421
Q ss_pred -ccCCCcEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hc
Q 010888 351 -TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TE 418 (498)
Q Consensus 351 -~~~~~~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~ 418 (498)
.....++.+|++|+.+- .+...+..|+ ..+.+.+|+..+|.+-+..++.. -+..++.+ ..
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~-------~l~~~~~~~~~~~~ 576 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKA-------FTFKIARRMGRNID 576 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHH-------HHHHHHHHcCCCCC
Confidence 11224578899998741 2344455555 34678889888887644333211 11222322 23
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 419 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 419 g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
++++..++.|.++.|++++|++.+.++......
T Consensus 577 ~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 577 SIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 689999999999999999999999988776443
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-12 Score=124.00 Aligned_cols=172 Identities=21% Similarity=0.222 Sum_probs=105.3
Q ss_pred CCCCCCccccCcH-HHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 212 SPDVKWESIKGLE-NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~-~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
.+..+|+++++.. +....+..... ......++|+||+|||||++++++++++ +....+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~------------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA------------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh------------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 3556788876544 34333332221 1122459999999999999999998876 566677776553
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC-CC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn-~p 366 (498)
.. .+...++... ...+|+|||++.+..... ....++..++.....+ ..+|.|+| .|
T Consensus 81 ~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~-----------~~~~lf~l~n~~~~~~--~~vI~ts~~~p 137 (233)
T PRK08727 81 AG--------RLRDALEALE--GRSLVALDGLESIAGQRE-----------DEVALFDFHNRARAAG--ITLLYTARQMP 137 (233)
T ss_pred hh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-----------HHHHHHHHHHHHHHcC--CeEEEECCCCh
Confidence 32 2223333332 347999999998864321 1223334444332222 22444554 55
Q ss_pred CC---CCHHHHhcc--cceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 367 WE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 367 ~~---Ld~al~~Rf--~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.. +.+++++|| ...+.++.|+.+++..+++.++....... +..++.|++++.
T Consensus 138 ~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~ 195 (233)
T PRK08727 138 DGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGE 195 (233)
T ss_pred hhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 54 478999997 46688999999999999998765544432 223555666655
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-12 Score=138.40 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=120.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE--------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-------- 281 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~-------- 281 (498)
+..++.+|++|+|++.+++.|+..+.. ..-++++||+||+|||||++|+.+|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 346788999999999999999987643 1334679999999999999999999999662100
Q ss_pred --Eeccc------cc-------hhccc---CcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 282 --ISASS------VV-------SKWRG---DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 282 --v~~s~------l~-------~~~~G---~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
-.|.. +. ..+.| ..-..++.+.+.+. .....|++|||+|.+.. ..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-------------~a 143 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-------------AA 143 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-------------HH
Confidence 01100 00 00111 11234455444442 22346999999998842 23
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.+.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..+.|..++.++-...++..+....... +..++.++..+.
T Consensus 144 ~naLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 144 FNAFLKTLEEP---PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 56788888743 233555556667788888999999 6699999999998888887776544332 223455565555
Q ss_pred C
Q 010888 419 G 419 (498)
Q Consensus 419 g 419 (498)
|
T Consensus 220 G 220 (620)
T PRK14954 220 G 220 (620)
T ss_pred C
Confidence 4
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=140.79 Aligned_cols=175 Identities=21% Similarity=0.234 Sum_probs=123.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++++|++.+++.|...+... ...+++||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 456788999999999999999887541 223579999999999999999999998652
Q ss_pred --------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 279 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 279 --------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
++.++.. .+.....++.+++.+.. ....|++|||+|.|. ....
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-------------~~a~ 138 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-------------TAAF 138 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-------------HHHH
Confidence 1222211 12334566777666543 234699999999884 2356
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
+.|+..++. ....+++|.+|+.+..+.+.+++|+ ..+.|+.++.++-...++.++.......+ ..+..+++.+.|
T Consensus 139 naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 139 NALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 778888873 3334667777778888889999999 55889888888877777776655443322 235556666655
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=144.86 Aligned_cols=204 Identities=22% Similarity=0.239 Sum_probs=136.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-------
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~------- 290 (498)
+.|+|++++++.+.+.+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 35789999999998877542110 01112344468999999999999999999999999999999876432
Q ss_pred -----cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcE
Q 010888 291 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 357 (498)
Q Consensus 291 -----~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~v 357 (498)
|+|... ...+.+..+....+||+|||+|.+.+ .+.+.|++.++.-. ..-.++
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 222211 12244455566779999999998753 36677888776421 112357
Q ss_pred EEEEEeCCCC-------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-------CCC
Q 010888 358 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 405 (498)
Q Consensus 358 iVIaaTn~p~-------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~ 405 (498)
++|+|||... .+.|+++.|++..+.|.+.+.++...|++..+... ...
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7888887631 15778889999999999999999999998877431 111
Q ss_pred ---CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 010888 406 ---ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 406 ---~~~~l~~La~~--t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.+..++.|++. ...+..+.|+.+++......+.+
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 11123445553 23455677777766666555543
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=140.71 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=123.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---------- 279 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~---------- 279 (498)
...++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.+.+..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4567889999999999999998877431 2345689999999999999999999885321
Q ss_pred ---------------EEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 280 ---------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 280 ---------------i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
+.++.+. ...-..++.+.+.+.. ....|++|||+|.|.. ...
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~a~ 137 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------AAF 137 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------HHH
Confidence 2222210 1122334444443332 2346999999998742 245
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
+.|+..++.. ...+++|.+++.++.+.+.+++|+ ..+.|+.++..+...+++..+.......+ ..+..++..+.|
T Consensus 138 naLLk~LEep---p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 138 NALLKTLEEP---PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6677777743 233556666777777888999998 45889999999988888888766544322 224455555554
Q ss_pred CcHHHHHHHHH
Q 010888 420 YSGSDIRLVSK 430 (498)
Q Consensus 420 ~s~~dL~~L~~ 430 (498)
+.+++.++++
T Consensus 214 -dlr~al~~Le 223 (585)
T PRK14950 214 -SMRDAENLLQ 223 (585)
T ss_pred -CHHHHHHHHH
Confidence 4444443333
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=131.99 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=103.5
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeE--EEEe
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNIS 283 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~--i~v~ 283 (498)
....|++|+|++++++.+.-.+.. ....++||.|+||||||++|+++++.+ +.++ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 357799999999999988854422 122689999999999999999999988 3321 1110
Q ss_pred cc---------cc---------------chhcccC--cHHHH-HH--HHHHH--HhcCCeEEEEcCccchhhhccccchh
Q 010888 284 AS---------SV---------------VSKWRGD--SEKLI-KV--LFELA--RHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 284 ~s---------~l---------------~~~~~G~--~~~~l-~~--~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
+. .+ .....|. .+..+ .. .|..- .....++|||||++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 00 00 0001111 00000 00 01100 011236999999998853
Q ss_pred hHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCCCH-HHHHHHHHHhc
Q 010888 333 HEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL 399 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~Pd~-~eR~~IL~~~l 399 (498)
.+++.|+..|+.-. ....++++++++|..+ .++++++.||...+.++.|.. ++|.++++...
T Consensus 143 -----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 -----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 35666777775321 1234578888888654 589999999999999988865 88999998754
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-12 Score=112.00 Aligned_cols=138 Identities=40% Similarity=0.629 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHHH
Q 010888 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 222 G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
|.+...+.+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++.+............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 455666666665422 234689999999999999999999998 88999999877654432211111
Q ss_pred ---HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc---CCCcEEEEEEeCCCC--CCC
Q 010888 299 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPW--ELD 370 (498)
Q Consensus 299 ---l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---~~~~viVIaaTn~p~--~Ld 370 (498)
............+.+|+|||++.+... ....++..+..... ....+.+|+++|... .++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 112233344556799999999987321 22334444443322 134577888888776 688
Q ss_pred HHHHhcccceeEec
Q 010888 371 AAMLRRLEKRILVP 384 (498)
Q Consensus 371 ~al~~Rf~~~i~~~ 384 (498)
+.+.+||...+.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998766654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=131.39 Aligned_cols=196 Identities=17% Similarity=0.258 Sum_probs=130.9
Q ss_pred CCCCCCCccccCcHH---HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEE
Q 010888 211 GSPDVKWESIKGLEN---AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 282 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~---~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v 282 (498)
-.+.++|++++.-.. +......+...+ ..+...++||||+|.|||+|++|++++. +..++++
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 457788999865333 333333332221 2245679999999999999999999987 4568888
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+...+...++......-..-|+.-. .-.+|+|||++.+.++ ...+.++...++.+...+. -+|+++
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk-----------~~~qeefFh~FN~l~~~~k-qIvlts 215 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK-----------ERTQEEFFHTFNALLENGK-QIVLTS 215 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC-----------hhHHHHHHHHHHHHHhcCC-EEEEEc
Confidence 8887766655433332233344444 4478999999999765 3345667777766655554 445655
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 431 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~ 431 (498)
...|.. +.+.+++||. ..+.+.+|+.+.|..||+..+.......+.+ +.-++.+.. -+.+++..++..
T Consensus 216 dr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~ 289 (408)
T COG0593 216 DRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNR 289 (408)
T ss_pred CCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 566655 5689999985 4567788999999999999887776664443 444566554 355666655544
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=128.52 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=106.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CeEEEEec
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-------~~~i~v~~ 284 (498)
.+...|++|+|++++|..|...+..| ...++||.|++|||||++||++++.+. .||. ..+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 45678999999999999999876543 236899999999999999999988762 2332 000
Q ss_pred -------cccchhc-------------------ccCcHHHH------HHHHHHH---------HhcCCeEEEEcCccchh
Q 010888 285 -------SSVVSKW-------------------RGDSEKLI------KVLFELA---------RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 285 -------s~l~~~~-------------------~G~~~~~l------~~~f~~a---------~~~~p~VL~IDEiD~l~ 323 (498)
++..+.. .|.++..+ ...+... .....++|||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0000000 11122211 1111111 01224799999999886
Q ss_pred hhccccchhhHHHHHHHHHHHHHhhC---------Cc-cCCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCCC-HHHH
Q 010888 324 SQRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEAR 391 (498)
Q Consensus 324 ~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~Pd-~~eR 391 (498)
+. +++.|+..|+. .+ ....++++|+|.|..+ .+.+++..||...+.+..|+ .+.+
T Consensus 158 ~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 158 DH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred HH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHH
Confidence 44 45556666643 11 1234577777777654 59999999999999999997 6999
Q ss_pred HHHHHHhc
Q 010888 392 RAMFESLL 399 (498)
Q Consensus 392 ~~IL~~~l 399 (498)
.+|++...
T Consensus 225 ~~il~~~~ 232 (350)
T CHL00081 225 VKIVEQRT 232 (350)
T ss_pred HHHHHhhh
Confidence 99998864
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-12 Score=120.25 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=103.7
Q ss_pred CCCCCCccccCcH---HHHHHHHHHHhccccCchhhccCCCC-CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 212 SPDVKWESIKGLE---NAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~---~~k~~L~~~i~~~l~~~~~~~~~~~~-~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.+..+|++++--+ .+...++++...+ ...+ .+.++||||||||||||++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4667888876533 3555555543211 0122 2679999999999999999999988753322 1110
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
. ...+ ....+|+|||+|.+- . ..+...++.+...+. .++++++..|.
T Consensus 79 -------~----~~~~-----~~~d~lliDdi~~~~-------------~---~~lf~l~N~~~e~g~-~ilits~~~p~ 125 (214)
T PRK06620 79 -------N----EEIL-----EKYNAFIIEDIENWQ-------------E---PALLHIFNIINEKQK-YLLLTSSDKSR 125 (214)
T ss_pred -------c----hhHH-----hcCCEEEEeccccch-------------H---HHHHHHHHHHHhcCC-EEEEEcCCCcc
Confidence 0 0111 123789999998441 1 123333333323333 56777776664
Q ss_pred C--CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 368 E--LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 368 ~--Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
. + +++++|+. ..+.+..|+.+++..+++..+....... +..++.|+++..+ +.+.+..++.
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~ 191 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILE 191 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHH
Confidence 4 6 88999995 2588899999999999998877554432 2234556665543 3344443333
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=137.70 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=139.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE--E-----
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--F----- 280 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~--i----- 280 (498)
+.+.+++.+|++++|++.+.+.|...+..- .-.++.||.||.|||||++||.+|+.+++.- .
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 345678899999999999999999988552 3346899999999999999999999986542 1
Q ss_pred EE-eccccchh-------ccc---CcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 281 NI-SASSVVSK-------WRG---DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 281 ~v-~~s~l~~~-------~~G---~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
.+ +|.++... +.+ .+-..++.+.+.+. ...+-|.+|||++.|. ....+.||.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 00 11111100 011 12234555555543 2345699999998773 557788888
Q ss_pred HhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHH
Q 010888 346 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSD 424 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~d 424 (498)
.++ .+...|.+|.+|..+..+++.++||+ ..+.|..-+.++-...|...+.+..+..+.+ +..+++...| +.+|
T Consensus 142 TLE---EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 142 TLE---EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred ccc---cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 876 45566889999999999999999999 4588888888898888999888777765543 4445555554 5556
Q ss_pred HHHHHHHHHh
Q 010888 425 IRLVSKEAAM 434 (498)
Q Consensus 425 L~~L~~~A~~ 434 (498)
...++..+..
T Consensus 217 alslLDq~i~ 226 (515)
T COG2812 217 ALSLLDQAIA 226 (515)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=133.27 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=127.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++|+|++.+++.|...+.. ...++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 35678999999999999999988743 1334679999999999999999999988532
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++++ ......++.+...+... ...|++|||+|.|.. ...+
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~n 139 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAFN 139 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHHH
Confidence 22222211 11233455555555432 245999999998842 3466
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~ 420 (498)
.|+..++.. ...+++|.+|+.+..+-+.+++|+ ..+.|..++.++-...++..+.......+. .+..++..+.|
T Consensus 140 aLLK~LEep---p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 140 AFLKTLEEP---PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHHhCC---CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 233556666767788999999999 559999999999888888887766554332 35566666654
Q ss_pred cHHHHHHHH
Q 010888 421 SGSDIRLVS 429 (498)
Q Consensus 421 s~~dL~~L~ 429 (498)
+.+++..++
T Consensus 215 dlr~al~~L 223 (614)
T PRK14971 215 GMRDALSIF 223 (614)
T ss_pred CHHHHHHHH
Confidence 334443333
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-11 Score=122.82 Aligned_cols=187 Identities=16% Similarity=0.120 Sum_probs=121.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------------
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 278 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------- 278 (498)
..+.++++|+|++.+++.|.+.+.. ...++.+||+||+|+||+++|.++|+.+-+.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999999988754 2345679999999999999999999987221
Q ss_pred ---------------------EEEEecc--ccchhc-ccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccc
Q 010888 279 ---------------------FFNISAS--SVVSKW-RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEAR 330 (498)
Q Consensus 279 ---------------------~i~v~~s--~l~~~~-~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~ 330 (498)
++.+... +-.++. ..-.-..++.+.+.+. ...+.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0111100 000000 0001223444444332 3457899999999883
Q ss_pred hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCH
Q 010888 331 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY 410 (498)
Q Consensus 331 ~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l 410 (498)
....+.|++.++.. ...+++|.+|+.++.+.+.+++|+ ..+.+++|+.++-..+|...... ..+..+
T Consensus 155 ------~~aanaLLK~LEep---p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 ------ANAANALLKVLEEP---PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred ------HHHHHHHHHHHhcC---CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 34566788888732 234567778888888999999999 56899999999999988876422 111122
Q ss_pred HHHHHHhcCCcHHHHHHHHH
Q 010888 411 DLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 411 ~~La~~t~g~s~~dL~~L~~ 430 (498)
..++..+.|- +.....+..
T Consensus 222 ~~l~~~s~Gs-p~~Al~ll~ 240 (365)
T PRK07471 222 AALAALAEGS-VGRALRLAG 240 (365)
T ss_pred HHHHHHcCCC-HHHHHHHhc
Confidence 4455555554 444444443
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=118.50 Aligned_cols=136 Identities=25% Similarity=0.360 Sum_probs=86.8
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh-----c
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-----W 291 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~-----~ 291 (498)
|+|.+..++++.+.+... ...+.+|||+|++||||+++|++|++.+ +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888877543 3445789999999999999999999977 579999999876432 1
Q ss_pred ccCc-------HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------ccCCCc
Q 010888 292 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 356 (498)
Q Consensus 292 ~G~~-------~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~ 356 (498)
.|.. ......+++.|.. ++|||||++.|.+. ++..|+..++.- .....+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccccccccc
Confidence 1111 0112245665554 78999999999754 555666666521 112236
Q ss_pred EEEEEEeCCCCCCCHHHHh-cccceeEe
Q 010888 357 VFVLAATNLPWELDAAMLR-RLEKRILV 383 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~-Rf~~~i~~ 383 (498)
+.||++|+. +|...+.+ +|...+++
T Consensus 135 ~RiI~st~~--~l~~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 135 VRIIASTSK--DLEELVEQGRFREDLYY 160 (168)
T ss_dssp EEEEEEESS---HHHHHHTTSS-HHHHH
T ss_pred ceEEeecCc--CHHHHHHcCCChHHHHH
Confidence 899999997 56655555 66554443
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-11 Score=113.75 Aligned_cols=191 Identities=18% Similarity=0.198 Sum_probs=134.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+.+.+.+|+|.+..++.|.+....+.. ..|.++|||+|..|||||.++||+.++. +..+++|+..++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3457899999999999999987765443 4566899999999999999999999988 6789999988774
Q ss_pred hhcccCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC-CccCCCcEEEEEEeCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 366 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~viVIaaTn~p 366 (498)
.+..+++..+.. ..-|||+||+--= . . ..--..|-..++| +..+..+|++.+|+|+.
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSFe-----~---g----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSFE-----E---G----DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCCC-----C---C----chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 234455555543 3479999998211 0 1 1112223344554 57778889999999987
Q ss_pred CCCCH----------------------HHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhcC
Q 010888 367 WELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTEG 419 (498)
Q Consensus 367 ~~Ld~----------------------al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~----La~~t~g 419 (498)
..++. .+-.||...+.|..++.++-..|+.++++...+..+. .++. -|..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 54331 2334999999999999999999999999887766432 2222 2333445
Q ss_pred CcHHHHHHHHHH
Q 010888 420 YSGSDIRLVSKE 431 (498)
Q Consensus 420 ~s~~dL~~L~~~ 431 (498)
.||+--.+.++.
T Consensus 265 RSGR~A~QF~~~ 276 (287)
T COG2607 265 RSGRVAWQFIRD 276 (287)
T ss_pred CccHhHHHHHHH
Confidence 676655544443
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=121.92 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=116.1
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------eEEEEecccc
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------TFFNISASSV 287 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~--------~~i~v~~s~l 287 (498)
+|++|+|++.+++.+...+.. ...++.+||+||+|+|||++|+++|+.+-+ .+..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 589999999999999988743 234467899999999999999999998732 22233221
Q ss_pred chhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 288 VSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
.+. ...-..++.+.+.+. .....|++||++|.+. ....+.|+..++. ++..+++|.+|
T Consensus 69 ~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-------------~~a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 69 NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-------------EQAQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-------------HHHHHHHHHHhcC---CCCCeEEEEEe
Confidence 011 112234555554332 2334699999998873 3356778888873 33445666677
Q ss_pred CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 010888 364 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 422 (498)
Q Consensus 364 n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~ 422 (498)
+.++.+.+.+++|+ ..+.|+.|+.++....++...... .+..++.++..+.|-.+
T Consensus 131 ~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 131 ENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred CChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHH
Confidence 78889999999999 579999999999888887654321 12224445555555333
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-11 Score=121.62 Aligned_cols=203 Identities=16% Similarity=0.154 Sum_probs=127.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------eEEEE-e
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNI-S 283 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-------~~i~v-~ 283 (498)
..+..+++|+|++++++.+...+.. ...++.+||+||+|+|||++|+.+|+.+.+ +.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3567899999999999999998743 233467999999999999999999998854 11100 1
Q ss_pred c---c-----------ccc---hh--c------ccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhH
Q 010888 284 A---S-----------SVV---SK--W------RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE 334 (498)
Q Consensus 284 ~---s-----------~l~---~~--~------~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~ 334 (498)
| . ++. .. . ..-.-..++.+.+... .....|++|||+|.|.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 1 0 000 00 0 0011223344333322 2345799999999884
Q ss_pred HHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 010888 335 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV 414 (498)
Q Consensus 335 ~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La 414 (498)
....+.|+..++.. ...+++|..|+.|..+.+.+++|+ ..+.+++|+.++-..+|+....... ..+..+..++
T Consensus 155 --~~aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 --RNAANAILKTLEEP---PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred --HHHHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 33456788888743 233455556777888889999999 6899999999999999987432211 1122244566
Q ss_pred HHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 415 ERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 415 ~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.+.| +++....+.........+.+...+
T Consensus 228 ~~s~G-~pr~Al~ll~~~~~~~~~~~~~~l 256 (351)
T PRK09112 228 QRSKG-SVRKALLLLNYGGLEIIATIDQLL 256 (351)
T ss_pred HHcCC-CHHHHHHHHhcCcHHHHHHHHHHH
Confidence 65555 444444555544444444444443
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=135.56 Aligned_cols=204 Identities=23% Similarity=0.265 Sum_probs=140.1
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccchh----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~~~---- 290 (498)
..++|++++...+.+.+..... -.....+|..++||.||+|+|||.+|+++|..+. ..++.+++|++..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 4689999999999998855221 1122245556789999999999999999999995 88999999998643
Q ss_pred --------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--ccC------C
Q 010888 291 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQS------D 354 (498)
Q Consensus 291 --------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~~------~ 354 (498)
|+|..+. ..+.+..+.++++||++|||++-. ..+.+.|++.+|.- +.. -
T Consensus 568 rLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH-------------pdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH-------------PDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC-------------HHHHHHHHHHhcCCeeecCCCCEEec
Confidence 4443331 235566677778999999998765 44888899998732 221 2
Q ss_pred CcEEEEEEeCCCC----------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC----
Q 010888 355 ELVFVLAATNLPW----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---- 402 (498)
Q Consensus 355 ~~viVIaaTn~p~----------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~---- 402 (498)
.+.+||+|||--. .+.|+++.|++.+|.|...+.+....|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3588899987431 15678888999999999999999999887765322
Q ss_pred ---CCCC---CCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHH
Q 010888 403 ---TGEE---SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 403 ---~~~~---~~~l~~La~~t~--g~s~~dL~~L~~~A~~~a~rr 439 (498)
.... +...+.++.+.. .|-.+-|+.+++.-....+.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 2211 112334554432 355566666666555544443
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-12 Score=127.23 Aligned_cols=130 Identities=23% Similarity=0.252 Sum_probs=83.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhccc---CcHHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG---DSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G---~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
...+|||+||||||||++|+++|..++.+++.++...-.....| ........-+-.+. ..+++|+|||++.+.+..
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 34689999999999999999999999999999985210111111 11111111122222 245899999999886542
Q ss_pred cccchhhHHHHHHHHHHHHHh--------hCCccCCCcEEEEEEeCCC-----------CCCCHHHHhcccceeEecCCC
Q 010888 327 GEARSEHEASRRLKTELLIQM--------DGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPD 387 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~l--------d~~~~~~~~viVIaaTn~p-----------~~Ld~al~~Rf~~~i~~~~Pd 387 (498)
+..|...+ ++......++.+|+|+|.+ ..|++++++|| ..+++..|+
T Consensus 197 -------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~ 262 (383)
T PHA02244 197 -------------LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDE 262 (383)
T ss_pred -------------HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCc
Confidence 22222222 2222233568899999974 45899999999 569999998
Q ss_pred HHHHHHHH
Q 010888 388 TEARRAMF 395 (498)
Q Consensus 388 ~~eR~~IL 395 (498)
.. ...|.
T Consensus 263 ~~-E~~i~ 269 (383)
T PHA02244 263 KI-EHLIS 269 (383)
T ss_pred HH-HHHHh
Confidence 43 33443
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=132.72 Aligned_cols=216 Identities=21% Similarity=0.216 Sum_probs=142.0
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 291 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~- 291 (498)
.+.+++|.+...+.+.+.+.. ......+++|.|++|||||++|++++..+ +.||+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467899998888888776643 23445689999999999999999999987 5799999998773221
Q ss_pred ----ccCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 292 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 292 ----~G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
.|.... .....+. ...++.|||||+|.|... .+..|+..++.-. .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCCCe
Confidence 111000 0001122 223478999999998654 4445666654321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s 421 (498)
...++.+|+||+.. ..+.+.+..|+. .+.+.+|...+|.+-+..++.. -+..++.. ..+++
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~-------~l~~~~~~~~~~~~~~~ 341 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARH-------FLQVAARELGVEAKLLH 341 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHH-------HHHHHHHHcCCCCCCcC
Confidence 12346888888764 235567777773 3677778777776533333211 11222222 24689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..+..|.++.|++++|++.+.++......++.. |+.+|+...+
T Consensus 342 ~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~~~------i~~~~l~~~~ 385 (469)
T PRK10923 342 PETEAALTRLAWPGNVRQLENTCRWLTVMAAGQE------VLIQDLPGEL 385 (469)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc------ccHHHCcHhh
Confidence 9999999999999999999999998776554433 7777775444
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-11 Score=136.55 Aligned_cols=203 Identities=22% Similarity=0.223 Sum_probs=132.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~---- 290 (498)
..++|++.+++.+.+.+....... .....|...+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGL---EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 468999999999999886532110 1112333458999999999999999999998 457899998876422
Q ss_pred --------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--c------CC
Q 010888 291 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 354 (498)
Q Consensus 291 --------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~ 354 (498)
|+|..+. ..+.+..+..+++||+|||+|.+.+ .+.+.|++.++.-. . .-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3332221 1233455667789999999987643 35666777776321 1 11
Q ss_pred CcEEEEEEeCCCC-----------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC---
Q 010888 355 ELVFVLAATNLPW-----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--- 402 (498)
Q Consensus 355 ~~viVIaaTn~p~-----------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~--- 402 (498)
.+.++|.|||... .+.|++++|++ .+.|.+.+.++...|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 4577888988521 15678888996 78999999999999998766432
Q ss_pred -----CCCC---CCCHHHHHHHhcC--CcHHHHHHHHHHHHhHHHHH
Q 010888 403 -----TGEE---SLPYDLLVERTEG--YSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 403 -----~~~~---~~~l~~La~~t~g--~s~~dL~~L~~~A~~~a~rr 439 (498)
.... +..++.|++...+ +-.+.++.+++.-...++.+
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 2111 1123445555432 45677777777666555554
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=136.65 Aligned_cols=204 Identities=20% Similarity=0.232 Sum_probs=134.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 292 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~ 292 (498)
.+.+++|.+...+.+.+.+.. ......+++|+|++||||+++|++++... +.+|+.++|+.+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK----------IAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 456789988888887776633 22344689999999999999999999877 46899999987642211
Q ss_pred -----cCc----H---HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------cc
Q 010888 293 -----GDS----E---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 352 (498)
Q Consensus 293 -----G~~----~---~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~ 352 (498)
|.. . ....+.+. ....++|||||++.|.+. .+..|+..++.- ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCce
Confidence 100 0 00011122 223578999999998644 445555555421 11
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s 421 (498)
...++.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+-+..++.. -+..++.. ..+++
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~-------~l~~~~~~~~~~~~~~~ 342 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANA-------FLERFARELKRKTKGFT 342 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHH-------HHHHHHHHhCCCCCCCC
Confidence 12357888888774 23556666677 34778888888887643333211 12223322 24689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+..+..|.++.|++++|++.+.++.+...+.+
T Consensus 343 ~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 343 DDALRALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999887654443
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=114.94 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=101.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-C----CeEEEE
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI 282 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~----~~~i~v 282 (498)
+....++..+.||+|.++..+.|.-+... ....+++|.|||||||||-+.++|+++ | --+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 34456778899999999999999976533 223589999999999999999999998 3 346788
Q ss_pred eccccchhcccCcHHHHHHHHHHHH-hcC---CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELAR-HHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~-~~~---p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
|+++-.+-.+ ....++ .|..-+ ... ..|+++||+|++... .+..+-..|+-++.. ..
T Consensus 85 NASdeRGIDv--VRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiyS~t---tR 145 (333)
T KOG0991|consen 85 NASDERGIDV--VRNKIK-MFAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIYSNT---TR 145 (333)
T ss_pred cCccccccHH--HHHHHH-HHHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHHccc---ch
Confidence 8876543211 222222 232222 122 259999999999543 222333344433322 34
Q ss_pred EEEEeCCCCCCCHHHHhcccceeEecCCCHHH-HHHHHH
Q 010888 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEA-RRAMFE 396 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~e-R~~IL~ 396 (498)
+..++|....+-+.+.+||.. +.|.-.+..+ ...+++
T Consensus 146 FalaCN~s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRCAI-LRYSKLSDQQILKRLLE 183 (333)
T ss_pred hhhhhcchhhhhhhHHhhhHh-hhhcccCHHHHHHHHHH
Confidence 677899988999999999954 5554444443 334333
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=135.53 Aligned_cols=205 Identities=22% Similarity=0.274 Sum_probs=134.3
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc--
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-- 291 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~-- 291 (498)
...|+|++.+++.+.+.+...... ......|...+||+||||||||++|+++|..+ +.+++.++++++....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 356999999999999987642110 00112345679999999999999999999987 5789999998764321
Q ss_pred ----------ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--cc------C
Q 010888 292 ----------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------S 353 (498)
Q Consensus 292 ----------~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~ 353 (498)
+|..+ -..+....+....+||+|||++.+.+ .+.+.|++.++.- .. .
T Consensus 641 ~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 641 ARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred HHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCceecCCCeEEe
Confidence 12111 12233444556668999999998753 3667777777532 11 1
Q ss_pred CCcEEEEEEeCCCCC-------------------------CCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC------
Q 010888 354 DELVFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ------ 402 (498)
Q Consensus 354 ~~~viVIaaTn~p~~-------------------------Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~------ 402 (498)
-.+.+||+|||.... +.|.+..|++..+.|.+++.++...|+...+...
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 245778899987311 4467888999999999999999999988765321
Q ss_pred -CCCCCC---CHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 403 -TGEESL---PYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 403 -~~~~~~---~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
...... .++.|++.. ..+..+.|+.+++......+.+
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 111111 233455442 2456677777777666665554
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=121.34 Aligned_cols=153 Identities=20% Similarity=0.232 Sum_probs=95.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEecc-ccchhcccCc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS-SVVSKWRGDS 295 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s-~l~~~~~G~~ 295 (498)
.|+|.+++++.+...+. ...+|||.||||||||++|++++..++. +|..+.+. .......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 58899998888886652 3468999999999999999999998743 45544433 1222333321
Q ss_pred -HHHH--HHHHHHHHhc---CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-------cCCCcEEEEEE
Q 010888 296 -EKLI--KVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLAA 362 (498)
Q Consensus 296 -~~~l--~~~f~~a~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~~~~~viVIaa 362 (498)
-... ...|...... ...+||+|||..+. ..+++.|+..|+.-. .+-...++++|
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 0000 1122211111 23489999998664 446777888884321 11122345556
Q ss_pred eCCCCC---CCHHHHhcccceeEecCCC-HHHHHHHHHHh
Q 010888 363 TNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL 398 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~~~i~~~~Pd-~~eR~~IL~~~ 398 (498)
||.... ..+++..||...+.+++|+ .++..+++...
T Consensus 154 TN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 154 SNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 674321 3358999998888999996 46667888764
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-11 Score=120.62 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=101.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEE--------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF-------- 280 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i-------- 280 (498)
.|..|+|++++|+.|.-.+..| ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5889999999999987655332 23689999999999999999999877 22221
Q ss_pred -EEecc-------------------ccch-----hcccCcH--HHH--------HHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 281 -NISAS-------------------SVVS-----KWRGDSE--KLI--------KVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 281 -~v~~s-------------------~l~~-----~~~G~~~--~~l--------~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
..+|. ++.. ...|... +.+ .+++. ....++|||||++.+.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhCCH-
Confidence 00000 1111 1222110 000 01111 12247999999998853
Q ss_pred ccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCCCH-HHHHH
Q 010888 326 RGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA 393 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~Pd~-~eR~~ 393 (498)
.+++.|+..|+.-. ....++++|+++|..+ .+.+++++||...+.++.|+. ++|.+
T Consensus 146 ------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 146 ------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 35566666664211 1234577888877654 599999999999999998865 88999
Q ss_pred HHHHhc
Q 010888 394 MFESLL 399 (498)
Q Consensus 394 IL~~~l 399 (498)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998854
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=132.04 Aligned_cols=207 Identities=21% Similarity=0.239 Sum_probs=129.9
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh---
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--- 290 (498)
.+.++|++.+++.+...+....... .....|...+||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 4578999999999999885431100 0011233478999999999999999999987 567999999876432
Q ss_pred --cccCcHH-----HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--c------cCCC
Q 010888 291 --WRGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSDE 355 (498)
Q Consensus 291 --~~G~~~~-----~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~------~~~~ 355 (498)
..|.... .-..+....+....+||+|||++.+.+ .+.+.|+..++.- . ..-.
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCceecCCceEEeec
Confidence 1111100 011122333444558999999987743 3566677777531 1 1123
Q ss_pred cEEEEEEeCCC-------------------------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-------C
Q 010888 356 LVFVLAATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------T 403 (498)
Q Consensus 356 ~viVIaaTn~p-------------------------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~ 403 (498)
+.++|+|||.. ..+.|++++|++..+.|.+++.++...|++..+... .
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~g 790 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERG 790 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45688899863 125578999999999999999999888888776442 1
Q ss_pred CCCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 404 GEESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 404 ~~~~~~---l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.....+ ++.|+... ..|-.+.|+.+++.-....+.+
T Consensus 791 i~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 791 YEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred CcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 111122 23344321 1233567777776666555544
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=123.07 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=95.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh--cccCcH----------HHHHHHHHHHHhcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSE----------KLIKVLFELARHHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~--~~G~~~----------~~l~~~f~~a~~~~p~VL~IDE 318 (498)
.+++||.||||||||++++.+|++++.+++.+++...... ..|... ......+..|.. .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4689999999999999999999999999999988654433 333211 111223333433 458899999
Q ss_pred ccchhhhccccchhhHHHHHHHHHHHHHhhC-----------CccCCCcEEEEEEeCCCC------------CCCHHHHh
Q 010888 319 IDAIISQRGEARSEHEASRRLKTELLIQMDG-----------LTQSDELVFVLAATNLPW------------ELDAAMLR 375 (498)
Q Consensus 319 iD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-----------~~~~~~~viVIaaTn~p~------------~Ld~al~~ 375 (498)
+|...++ +++.|...++. .-.......||+|.|... .+++++++
T Consensus 143 in~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 143 YDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred hhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 9988544 22333333321 011233588999999853 37899999
Q ss_pred cccceeEecCCCHHHHHHHHHHhcC
Q 010888 376 RLEKRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 376 Rf~~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
||...+.+..|+.++..+|+.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9977788999999999999987654
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=132.31 Aligned_cols=183 Identities=25% Similarity=0.391 Sum_probs=137.4
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 275 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------- 275 (498)
....++......-.++.++|.++.++++.+.+... ..++-+|.|+||+|||.++..+|.+.
T Consensus 155 ~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~ 222 (786)
T COG0542 155 KYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPE 222 (786)
T ss_pred HHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCH
Confidence 34455555566788999999999999999887542 23678899999999999999999987
Q ss_pred ---CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 ---~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+..++.++.+.+. .+|.|+.+..++.+.+......+.||||||++.+.+.-...+...++.+-+.-.|
T Consensus 223 ~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL------- 295 (786)
T COG0542 223 SLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL------- 295 (786)
T ss_pred HHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-------
Confidence 5678888888876 4799999999999999999888999999999999876433211122333222222
Q ss_pred ccCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC
Q 010888 351 TQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES 407 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~ 407 (498)
.++. +-+|++|... -.-|+|+-||| ..+.+..|+.++-..||+.+-......+.
T Consensus 296 -ARGe-L~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 296 -ARGE-LRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred -hcCC-eEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 1333 4566666432 23689999999 55999999999999999988765554444
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=131.05 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------------------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 275 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------------------- 275 (498)
.|.+|+|++.++..+.-.+..+ ...+|||.|+||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5889999999998887655332 12579999999999999999999987
Q ss_pred ---------------CCeEEEEeccccchhcccCc--HHHH--------HHHHHHHHhcCCeEEEEcCccchhhhccccc
Q 010888 276 ---------------KTTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEIDAIISQRGEAR 330 (498)
Q Consensus 276 ---------------~~~~i~v~~s~l~~~~~G~~--~~~l--------~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~ 330 (498)
..||+.++++.......|.. +..+ ...+.. ...+||||||++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDD------ 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCH------
Confidence 35677766654433333321 1111 111111 1236999999998853
Q ss_pred hhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCC-CCCCHHHHhcccceeEecCC-CHHHHHHHHHHh
Q 010888 331 SEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL 398 (498)
Q Consensus 331 ~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p-~~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~~~ 398 (498)
.+++.|+..|+.-. ....++++|+|+|.. ..+.+++++||...+.++.| +.+++.++++..
T Consensus 141 -------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 141 -------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred -------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 35667777775211 112357888888854 35889999999988888776 467788888765
Q ss_pred c
Q 010888 399 L 399 (498)
Q Consensus 399 l 399 (498)
.
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=135.50 Aligned_cols=204 Identities=22% Similarity=0.255 Sum_probs=134.1
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~---- 290 (498)
+.|+|++.+++.+...+...... ......|...+||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 46899999999999887542110 01112344568999999999999999999988 468899998776421
Q ss_pred --------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--c------cCC
Q 010888 291 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSD 354 (498)
Q Consensus 291 --------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~------~~~ 354 (498)
|+|..+ ...+.+..+..+.+||+|||+|.+.+ .+.+.|++.++.- . ..-
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCcEEec
Confidence 222211 12344555666669999999998753 3667778877742 1 112
Q ss_pred CcEEEEEEeCCCCC-------------------------------------CCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 355 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 355 ~~viVIaaTn~p~~-------------------------------------Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
.+.++|+|||.... +.|++++|++..+.|.+.+.++...|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 45788889875310 34678889999999999999999999887
Q ss_pred hcCCC-------CCCC--C-CCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 010888 398 LLPSQ-------TGEE--S-LPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 398 ~l~~~-------~~~~--~-~~l~~La~~--t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.+.+. .... + ...+.|++. ...+-.+.|+.+++.-...++.+
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 76432 1111 1 113345554 22345667777766666555544
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-11 Score=132.33 Aligned_cols=213 Identities=23% Similarity=0.262 Sum_probs=132.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc---
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR--- 292 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~--- 292 (498)
.++|.+...+.+.+.+... ......++|+|++|||||++|+++++.. +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhh----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 5777776666655544331 2334679999999999999999999986 57999999987643211
Q ss_pred --cCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCC
Q 010888 293 --GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDE 355 (498)
Q Consensus 293 --G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~ 355 (498)
|.... .....+. ....++|||||+|.|.+. .+..|+..++.-. ....
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQ---AAEGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEE---ECCCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCceeee
Confidence 10000 0001121 223478999999999654 4445555554221 1122
Q ss_pred cEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHH
Q 010888 356 LVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSD 424 (498)
Q Consensus 356 ~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~d 424 (498)
++.+|++|+.+ ..+.+.+..|+ ..+.+.+|...+|.+-+..++.. -+..++.. ..++++..
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~-------~l~~~~~~~~~~~~~~~~~a 340 (444)
T PRK15115 269 DVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANH-------LLRQAAERHKPFVRAFSTDA 340 (444)
T ss_pred eEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHH-------HHHHHHHHhCCCCCCcCHHH
Confidence 57888888863 12333444444 33677788888887433222111 12222222 23689999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..|.++.|++++|++.+.++......++. .|+.+|+...+
T Consensus 341 ~~~L~~~~WpgNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~ 381 (444)
T PRK15115 341 MKRLMTASWPGNVRQLVNVIEQCVALTSSP------VISDALVEQAL 381 (444)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCCCC------ccChhhhhhhh
Confidence 999999999999999999999876544333 27777776555
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=114.95 Aligned_cols=136 Identities=21% Similarity=0.230 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
..++|+||+|+|||||++++++..+.. +++..++... .+..... .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC------
Confidence 459999999999999999999887655 3333322211 1111111 47999999976311
Q ss_pred hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCC
Q 010888 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE 406 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~ 406 (498)
...++..++.....+ ..+|++++..|.. ..+.+++|+. ..+.+..|+.++|..+++..+.......
T Consensus 103 --------~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 --------ETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred --------HHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 122444444333333 3456666555532 3678999985 6788899999999999999987765443
Q ss_pred C-CCHHHHHHHhc
Q 010888 407 S-LPYDLLVERTE 418 (498)
Q Consensus 407 ~-~~l~~La~~t~ 418 (498)
+ ..++.|+++..
T Consensus 174 ~~ev~~~La~~~~ 186 (226)
T PRK09087 174 DPHVVYYLVSRME 186 (226)
T ss_pred CHHHHHHHHHHhh
Confidence 3 23455666555
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=117.92 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=105.7
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--------------------- 276 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--------------------- 276 (498)
++++|.+.+...+..+.... ...++.+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 36778888888888776431 12234699999999999999999999986
Q ss_pred ---CeEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC
Q 010888 277 ---TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 349 (498)
Q Consensus 277 ---~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 349 (498)
-.++.+++++..... .....++.+.+.... ...-|++|||+|.|.. ...+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-------------~A~nallk~lE- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-------------DAANALLKTLE- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhc-
Confidence 467788877654321 123445554444333 2357999999999964 35566777776
Q ss_pred CccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 350 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 350 ~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
....+..+|.+||.++.+-+.+++|+ ..+.|++|+........+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 33445778889999999999999999 558887766555554444
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.7e-11 Score=126.01 Aligned_cols=216 Identities=21% Similarity=0.243 Sum_probs=140.0
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 291 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~- 291 (498)
.+..++|.+...+.+.+.+.. ......+++++|++||||+++|++++..+ +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHH----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 456788888777777666533 23344689999999999999999999876 5799999998774321
Q ss_pred ----ccCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 292 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 292 ----~G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
.|.... .....+.. ...++|||||+|.+.+. .+..|+..++.-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 110000 00111222 23478999999999654 4455666554321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s 421 (498)
...++.+|++|+.+ ..+.+.+..|+. .+.+..|+..+|.+-+..++.. -+..++.. ..+++
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l~~~-------~l~~~~~~~~~~~~~~~ 346 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLLANH-------FLQKFSSENQRDIIDID 346 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHHHHH-------HHHHHHHHcCCCCCCcC
Confidence 12347889999864 135555666663 3778888888886543333211 12233332 24689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..+..|..+.|+++++++.+.++.......+. .|+.+|+...+
T Consensus 347 ~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~~------~i~~~~l~~~~ 390 (457)
T PRK11361 347 PMAMSLLTAWSWPGNIRELSNVIERAVVMNSGP------IIFSEDLPPQI 390 (457)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCC------cccHHHChHhh
Confidence 999999999999999999999998876544332 27777776544
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-11 Score=129.44 Aligned_cols=218 Identities=20% Similarity=0.179 Sum_probs=139.1
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc-
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 292 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~- 292 (498)
...++|.+...+++.+.+... ......+++.|++||||+++|++++... +.+|+.++|..+.....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456889888888877766431 2334679999999999999999999876 57999999987643211
Q ss_pred ----cCc----HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCc
Q 010888 293 ----GDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 356 (498)
Q Consensus 293 ----G~~----~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~ 356 (498)
|.. ...............+++|||||++.+... .+..|+..++.-. ....+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeee
Confidence 100 000000000111223578999999998654 3445555554211 11225
Q ss_pred EEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHH
Q 010888 357 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDI 425 (498)
Q Consensus 357 viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL 425 (498)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|.+-+..++.. -+..++.. ..++++..+
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~-------~l~~~~~~~~~~~~~~~~~a~ 341 (463)
T TIGR01818 270 VRIVAATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARH-------FLALAARELDVEPKLLDPEAL 341 (463)
T ss_pred eEEEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHH-------HHHHHHHHhCCCCCCcCHHHH
Confidence 6788888764 234556666773 3567777766665433333211 11222322 246899999
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 426 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 426 ~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
..|..+-|++++|++.+.++.....+.+.. |+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~~~~~------i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMASGDE------VLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCCCc------ccHHhchHHH
Confidence 999999999999999999998776554433 7778876555
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=119.76 Aligned_cols=154 Identities=27% Similarity=0.340 Sum_probs=102.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch--hcccCcH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGDSE 296 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~--~~~G~~~ 296 (498)
.++|.++++..+...+. ...++||.||||||||++|+++|..++.+|+.+.|..... ...|...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 37787777777665542 2368999999999999999999999999999999964432 2222211
Q ss_pred HHHH----HHHHHHHh--cCC--eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC----cc-----CCCcEEE
Q 010888 297 KLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ-----SDELVFV 359 (498)
Q Consensus 297 ~~l~----~~f~~a~~--~~p--~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~-----~~~~viV 359 (498)
-... ..+....+ ... +++++|||+...+ .+++.|+..|+.. .. -..+.+|
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~v 157 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFIV 157 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEE
Confidence 1111 00100000 001 4999999988754 3667777777641 11 1245778
Q ss_pred EEEeC-----CCCCCCHHHHhcccceeEecCC-CHHHHHHHHHHhc
Q 010888 360 LAATN-----LPWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL 399 (498)
Q Consensus 360 IaaTn-----~p~~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~~~l 399 (498)
|+|+| ....|++++++||...++++.| +..+...++....
T Consensus 158 iaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 158 IATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 88888 3356899999999888999999 5555555555544
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=116.95 Aligned_cols=45 Identities=47% Similarity=0.660 Sum_probs=37.1
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
|++|+|++.+|+.|.-.... .+++||+||||||||++|+.+...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999976532 3799999999999999999999866
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=114.71 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=119.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 278 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------------- 278 (498)
.|++|+|++.+++.+.+.+.. ..-++.+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 588999999999999998754 2334689999999999999999999987321
Q ss_pred -EEEEecccc-chh--------ccc--------CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHH
Q 010888 279 -FFNISASSV-VSK--------WRG--------DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 279 -~i~v~~s~l-~~~--------~~G--------~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
++.+.+... .++ ..| -.-..++.+.+.+.. ....|++||++|.|.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 122221100 000 000 011234455444432 345799999999884
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER 416 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~ 416 (498)
....+.|++.++... . .++|..|+.++.|-+.++||+ ..+.|+.|+.++-..+|+....... .+.+...++..
T Consensus 138 ~~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 138 EAAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 335678889888542 2 346667788899999999999 6699999999999999987643211 11124566766
Q ss_pred hcCCcHHHHH
Q 010888 417 TEGYSGSDIR 426 (498)
Q Consensus 417 t~g~s~~dL~ 426 (498)
..|-.+..+.
T Consensus 211 a~Gs~~~al~ 220 (314)
T PRK07399 211 AQGSPGAAIA 220 (314)
T ss_pred cCCCHHHHHH
Confidence 6664444433
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-11 Score=105.95 Aligned_cols=110 Identities=29% Similarity=0.337 Sum_probs=70.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------hhcccC---cHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~~~~G~---~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
+|+|+||||||||++|+.+|+.++.+++.++++... +.+.-. ....-..+...++ .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 589999999999999999999999999999886532 111100 0000000000111 46899999998764
Q ss_pred hhccccchhhHHHHHHHHHHHHHhhCCcc----------CCC------cEEEEEEeCCCC----CCCHHHHhcc
Q 010888 324 SQRGEARSEHEASRRLKTELLIQMDGLTQ----------SDE------LVFVLAATNLPW----ELDAAMLRRL 377 (498)
Q Consensus 324 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~----------~~~------~viVIaaTn~p~----~Ld~al~~Rf 377 (498)
+ .++..|+..++.-.. ... .+.+|+|+|... .+++++++||
T Consensus 79 ~-------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 P-------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp H-------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred H-------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2 355556666653210 111 388999999988 7999999998
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-10 Score=113.68 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=105.6
Q ss_pred CCccccC-cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe----------------
Q 010888 216 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 278 (498)
Q Consensus 216 ~~~~IvG-~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---------------- 278 (498)
.|++|+| ++.+++.++..+.. ...++.+||+||+|+||+++|+++++.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788999 88899999988743 2345678999999999999999999987321
Q ss_pred --------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 279 --------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 279 --------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
+..+... +. ...-..++.+.+.+. .....|++|||+|.+. ....+.|++.
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-------------~~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-------------ASAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-------------HHHHHHHHHH
Confidence 2222111 01 012234455444433 2234699999998884 3356788888
Q ss_pred hhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 347 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 347 ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
++. ++..+++|.+|+.+..+.+.+++|+ ..++++.|+.++-..+|+.
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 874 3344667778888889999999999 6699999999888777764
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=105.16 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=89.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------EEEEeccccchhcccCcHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 305 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------~i~v~~s~l~~~~~G~~~~~l~~~f~~ 305 (498)
.++.+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 44679999999999999999999987432 22221110 0 0122445555555
Q ss_pred HHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhccccee
Q 010888 306 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 381 (498)
Q Consensus 306 a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i 381 (498)
+.. ..+.|++|||+|.+.. ...+.|+..++.. .....+|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-------------~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-------------AAANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-------------HHHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 543 3456999999998843 2355678888742 234556667777788999999999 579
Q ss_pred EecCCCHHHHHHHHHHh
Q 010888 382 LVPLPDTEARRAMFESL 398 (498)
Q Consensus 382 ~~~~Pd~~eR~~IL~~~ 398 (498)
.+++|+.++...+++..
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999888876
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=109.66 Aligned_cols=131 Identities=22% Similarity=0.175 Sum_probs=80.3
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC------------CCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~------------p~~Ld~al~~Rf~ 378 (498)
|+||||||++.|-- ...+-|...|+ ..-.++ ||.+||+ |..++..+++|.
T Consensus 292 pGVLFIDEvHmLDI-------------E~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHMLDI-------------ECFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhhhH-------------HHHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 78999999987721 23333444444 222334 5556664 456889999999
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCC
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 457 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~ 457 (498)
.++...+++.++-++|++.++.......+. .++.|++....-|-+.--+|+.-|...|.+| +.
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------g~---------- 417 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------GS---------- 417 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------CC----------
Confidence 678888899999999999998777665433 3555555433333333333333333333222 11
Q ss_pred CCCCCCHHHHHHHHhccCCC
Q 010888 458 QIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 458 ~~~~It~eD~~~AL~~~~ps 477 (498)
..+..+|++.|-.-+-.+
T Consensus 418 --~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 418 --KRVEVEDVERAKELFLDV 435 (450)
T ss_pred --CeeehhHHHHHHHHHhhH
Confidence 128899999988766443
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-10 Score=112.61 Aligned_cols=131 Identities=19% Similarity=0.291 Sum_probs=93.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------EEEEeccccchhcccCcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------~i~v~~s~l~~~~~G~~~~~l~~~f~ 304 (498)
+.++.+||+||+|+|||++|+++|+.+.+. ++.+....- + ..-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 445789999999999999999999988431 222222100 0 0112344555555
Q ss_pred HHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccce
Q 010888 305 LARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 380 (498)
Q Consensus 305 ~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~ 380 (498)
.+.. ....|++||++|.|. ....+.|++.++. +...+++|.+|+.++.+.+.++||+. .
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~-~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN-------------RNAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQ-Q 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC-------------HHHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhce-e
Confidence 4432 345699999999984 3467788888874 33457788899999999999999994 4
Q ss_pred eEecCCCHHHHHHHHHHhc
Q 010888 381 ILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l 399 (498)
+.|++|+.++-...|....
T Consensus 160 ~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 160 QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeCCCcCHHHHHHHHHHhc
Confidence 9999999999888887654
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.2e-10 Score=118.81 Aligned_cols=145 Identities=29% Similarity=0.366 Sum_probs=93.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------------------
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------------------- 275 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------------------- 275 (498)
..|+++.|++.+++.+.-.+ ....+++|.||||||||++++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47999999999988776543 334789999999999999999998743
Q ss_pred ---------CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 276 ---------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 276 ---------~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
..||..++++.......|.........+..|. .++|||||++.+. ..+++.|+..
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~-------------~~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK-------------RSVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC-------------HHHHHHHHHH
Confidence 12333333322222222221111222333333 3799999998874 3455666666
Q ss_pred hhCCc----------cCCCcEEEEEEeCCC-----C------------------CCCHHHHhcccceeEecCCCHH
Q 010888 347 MDGLT----------QSDELVFVLAATNLP-----W------------------ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 347 ld~~~----------~~~~~viVIaaTn~p-----~------------------~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
|+.-. ....++.+|+++|.- . .++..+++||+..+.++.++.+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 64321 112357889999852 1 3888999999999998876544
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=117.29 Aligned_cols=202 Identities=20% Similarity=0.194 Sum_probs=129.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhcccc---C---c-----------hhhc---cC-C-CCCceEEEEcCCCCcHHHHH
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIK---Y---P-----------KYFT---GL-L-SPWKGILLFGPPGTGKTMLA 268 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~---~---~-----------~~~~---~~-~-~~~~~vLL~GppGtGKT~lA 268 (498)
...+..|.|+.|.+.+-+.+..++..+-. . . +.+. .. . ++.+-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 34567799999999988888877754210 0 0 0000 01 1 22345789999999999999
Q ss_pred HHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHH--------hcCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 269 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR--------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 269 raia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~--------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
+.||++.|..+++||+++-.+. ..++..+..|- ...|..|+|||||--. +..+
T Consensus 344 HViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------------~~~V 404 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------------RAAV 404 (877)
T ss_pred HHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------HHHH
Confidence 9999999999999999876432 22333222221 2568899999998643 2234
Q ss_pred HHHHHHhh-------CCccC-----------CCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcC
Q 010888 341 TELLIQMD-------GLTQS-----------DELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 341 ~~Ll~~ld-------~~~~~-----------~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
+.++..+. |-... .-...|||.+|..+ .|+|+. -|...++|+.|......+=|+.++.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 44444443 11000 01245789999844 566655 6788899999988887777777776
Q ss_pred CCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 401 SQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 401 ~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
......+. .+..|++.+. .||+.-++....-+.
T Consensus 483 rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 483 RENMRADSKALNALCELTQ----NDIRSCINTLQFLAS 516 (877)
T ss_pred hhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHH
Confidence 66655433 3455555544 588876665554443
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=99.11 Aligned_cols=128 Identities=30% Similarity=0.412 Sum_probs=80.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeccccchh--------------cccCcHHHHHHHHHHHHhcCCeE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l~~~--------------~~G~~~~~l~~~f~~a~~~~p~V 313 (498)
+.+++|+||||||||++++.++..+... ++.+++...... ............+..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3689999999999999999999999764 888887654321 12234455667788888777899
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC-CCCCCHHHHhcccceeEecCC
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~-p~~Ld~al~~Rf~~~i~~~~P 386 (498)
|+|||++.+............ ........ ........+|+++|. ....+..+..|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLL----EELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhh----hhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999998654221100000 00000011 112233667888885 334455555588777776554
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=120.07 Aligned_cols=54 Identities=35% Similarity=0.523 Sum_probs=45.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
..|..-+++++|++++++.++..+.. .++++|+||||||||++++++++.++..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34667799999999999999887642 2489999999999999999999998543
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-11 Score=125.44 Aligned_cols=213 Identities=19% Similarity=0.279 Sum_probs=134.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc---
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR--- 292 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~--- 292 (498)
.++|.+...+.+.+.+.. .......++++|++||||+++|++++... +.||+.++|+.+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhh----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 577777777776665532 23445789999999999999999999876 57999999987642211
Q ss_pred --cCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCC
Q 010888 293 --GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDE 355 (498)
Q Consensus 293 --G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~ 355 (498)
|.... .....+ ....+++|||||++.|.+. .+..|+..++.-. ....
T Consensus 210 lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRF---VEADGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISV 273 (441)
T ss_pred hcCCCCCCcCCCCcCCCCce---eECCCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeee
Confidence 10000 000111 1223589999999999754 3444555554321 1112
Q ss_pred cEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHH
Q 010888 356 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSD 424 (498)
Q Consensus 356 ~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~d 424 (498)
++.+|++|+.+- .+.+.+..|+ ..+.+.+|+..+|.+-+..++.. -+..++.. ..++++..
T Consensus 274 ~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~-------~l~~~~~~~~~~~~~~~~~a 345 (441)
T PRK10365 274 DVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGH-------FLQRFAERNRKAVKGFTPQA 345 (441)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHH-------HHHHHHHHhCCCCCCcCHHH
Confidence 466787876641 2444455555 34677888888776543333211 12223332 24589999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..|..+.|++++|++.+.++......+.. .|+.+|+...+
T Consensus 346 ~~~L~~~~wpgN~reL~~~~~~~~~~~~~~------~i~~~~l~~~~ 386 (441)
T PRK10365 346 MDLLIHYDWPGNIRELENAVERAVVLLTGE------YISERELPLAI 386 (441)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCCC------ccchHhCchhh
Confidence 999999999999999999999866544332 27777776554
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=114.15 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=87.8
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------EEEEec----c
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S 285 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~-------~i~v~~----s 285 (498)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5677777777777766552 23689999999999999999999988421 223322 1
Q ss_pred ccchhcc----cC--cHHHHHHHHHHHHh--cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC--------
Q 010888 286 SVVSKWR----GD--SEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 349 (498)
Q Consensus 286 ~l~~~~~----G~--~~~~l~~~f~~a~~--~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------- 349 (498)
++.+.+. |. .......+...|.. ..|.+|+|||++.....+ +...++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccc
Confidence 2222211 10 01122334445543 357999999998764332 22222332221
Q ss_pred -----------CccCCCcEEEEEEeCCCC----CCCHHHHhcccceeEecC
Q 010888 350 -----------LTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 350 -----------~~~~~~~viVIaaTn~p~----~Ld~al~~Rf~~~i~~~~ 385 (498)
.-....++.||+|+|..+ .+|.|++|||. .+++.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 012245699999999987 69999999994 466654
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=120.27 Aligned_cols=148 Identities=19% Similarity=0.148 Sum_probs=108.9
Q ss_pred CCceEEEEc--CCCCcHHHHHHHHHHHh-----CCeEEEEeccccchhcccCcHHHHHHHHHHHHhc------CCeEEEE
Q 010888 250 PWKGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHH------APSTIFL 316 (498)
Q Consensus 250 ~~~~vLL~G--ppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~------~p~VL~I 316 (498)
|.-+-+..| |++.|||++|+++|+++ +.+++++|+++..+ -..++.+...+... ...|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334456779 99999999999999998 56899999987532 23455555443322 2369999
Q ss_pred cCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 317 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 317 DEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
||+|.|.. ..++.|+..|+.. ...+.+|.+||.+..+.+++++|| ..+.|+.|+.++-...|+
T Consensus 637 DEaD~Lt~-------------~AQnALLk~lEep---~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQ-------------DAQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCH-------------HHHHHHHHHhhCC---CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999943 3567788888743 345778889999999999999999 668999999998888888
Q ss_pred HhcCCCCCC-CCCCHHHHHHHhcCC
Q 010888 397 SLLPSQTGE-ESLPYDLLVERTEGY 420 (498)
Q Consensus 397 ~~l~~~~~~-~~~~l~~La~~t~g~ 420 (498)
..+...... .+..+..++..+.|-
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEGD 724 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCC
Confidence 877655443 233466667666653
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=105.35 Aligned_cols=113 Identities=25% Similarity=0.312 Sum_probs=74.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----eEEEEeccccchhcccCcHHHHHHHHHH----HHhcCCeEEEEcCccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFEL----ARHHAPSTIFLDEIDA 321 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~----~~i~v~~s~l~~~~~G~~~~~l~~~f~~----a~~~~p~VL~IDEiD~ 321 (498)
|-.++||.||+|||||.+|+++|+.+.. +++.++++++..... ....+...... .......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4468999999999999999999999986 999999998876110 11111111111 1111124999999999
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCC
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 366 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p 366 (498)
+.+... .........+++.|+..+++-. -.-.++++|+|+|--
T Consensus 80 a~~~~~--~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNS--GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTT--TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccccc--ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 987522 2223333567888999887421 112468899999874
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=106.45 Aligned_cols=156 Identities=27% Similarity=0.352 Sum_probs=98.2
Q ss_pred CeEEEEcCccchhhhccccchhhHHHH-HHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~ 378 (498)
.+|+||||||.++...+.+.. +.++ -++-.||-.++|-+. +...+++|++. ..|.+|-|.|.-||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 359999999999987542221 3333 455567777776432 23458888875 678899999999999
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhHH-------HHHHHHHhhch
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQP-------LRRLMVLLEGR 447 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g----~s~~dL~~L~~~A~~~a-------~rrl~~~le~~ 447 (498)
-.+++...+.++...||..--... -..+..|. .|+| |+...|..+..-|+.-+ .||+..+++..
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sL----ikQY~aLl-kTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASL----IKQYKALL-KTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHH----HHHHHHHH-hhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 999999999999888876421000 00011111 1333 77788888888777544 46776666654
Q ss_pred hc----cCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 448 QE----VAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 448 ~~----~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
-+ .+++.. .+...|+.+-+.+.|..+
T Consensus 404 LediSFeA~d~~-g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 404 LEDISFEAPDMS-GQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHHhCccCCcCC-CCeEEEcHHHHHHHHHHH
Confidence 32 222222 223347788777777654
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=118.28 Aligned_cols=167 Identities=23% Similarity=0.205 Sum_probs=101.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE----eccccchhccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWRG 293 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v----~~s~l~~~~~G 293 (498)
.+|.|++.+|..+.-.+.........-........+|||+|+||||||++|+++++.+....+.. ++..+......
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 46899999988887655332110000000123345899999999999999999999875432221 22222111100
Q ss_pred C---cHHHH-HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEE
Q 010888 294 D---SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFV 359 (498)
Q Consensus 294 ~---~~~~l-~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viV 359 (498)
. .+..+ .+.+. ....++++|||+|.+... .+..|+..|+.-. ..+.+..|
T Consensus 283 ~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 283 DPETREFTLEGGALV---LADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred ccCcceEEecCccEE---ecCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 0 00000 01111 123479999999998543 4455666664211 11245789
Q ss_pred EEEeCCCC-------------CCCHHHHhcccceeE-ecCCCHHHHHHHHHHhcC
Q 010888 360 LAATNLPW-------------ELDAAMLRRLEKRIL-VPLPDTEARRAMFESLLP 400 (498)
Q Consensus 360 IaaTn~p~-------------~Ld~al~~Rf~~~i~-~~~Pd~~eR~~IL~~~l~ 400 (498)
|||+|+.+ .|++++++||+.... ...|+.+...+|+++.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999752 599999999987554 467899999999988654
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-10 Score=116.23 Aligned_cols=146 Identities=25% Similarity=0.332 Sum_probs=110.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc-ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 327 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s-~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~ 327 (498)
.+-.++||+||||+|||.||..+|..++.||+.+-.. ++.+......-..++.+|+.|....-++|++|+++.|..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD--- 612 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD--- 612 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc---
Confidence 4446899999999999999999999999999987543 333322222234578999999999889999999999853
Q ss_pred ccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH-HHHhcccceeEecCCCH-HHHHHHHHH
Q 010888 328 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFES 397 (498)
Q Consensus 328 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~-al~~Rf~~~i~~~~Pd~-~eR~~IL~~ 397 (498)
...-....++.++..|+..+......+.+.+|++||.+...|.. .+...|+..+.+|.-+. ++..+++..
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 23344566788888999999887777788989998887654432 56668988888877644 566666654
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=101.74 Aligned_cols=191 Identities=17% Similarity=0.226 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-eEE--E-Eec----ccc----chh----cccCcH-HHHHHH----HHHHHhcC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT-TFF--N-ISA----SSV----VSK----WRGDSE-KLIKVL----FELARHHA 310 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~-~~i--~-v~~----s~l----~~~----~~G~~~-~~l~~~----f~~a~~~~ 310 (498)
..++|+||+|+|||++++.+++++.. .+. . +++ .++ ... ..+... .....+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999998752 222 1 111 111 111 111111 111121 22233556
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC---CC----CHHHHhcccceeEe
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---EL----DAAMLRRLEKRILV 383 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~---~L----d~al~~Rf~~~i~~ 383 (498)
+.+|+|||++.+... ..+.+....+........+.|+.+. .++ .+ ...+.+|+...+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------LLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH-------------HHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeC
Confidence 789999999987432 1222221111111122223333333 221 11 23466688788899
Q ss_pred cCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCC
Q 010888 384 PLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ 458 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~-----~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~ 458 (498)
++.+.++-.+++...+...... .+..++.+.+.+.|.. +.|..++..++..+..+ .
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~------------------~ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE------------------E 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc------------------C
Confidence 9999999999998887543321 2234666788888875 55999999888876653 0
Q ss_pred CCCCCHHHHHHHHhccC
Q 010888 459 IGPIRPEDVEIALKNTR 475 (498)
Q Consensus 459 ~~~It~eD~~~AL~~~~ 475 (498)
...|+.+++..++..++
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 12399999999998765
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.4e-09 Score=114.49 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccchhcccCcH--HHHH-H--HHH--HHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSE--KLIK-V--LFE--LARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~~~~G~~~--~~l~-~--~f~--~a~~~~p~VL~IDEiD~ 321 (498)
-.+|||.|+||||||++|+++++.+. .||+.+..........|... ..+. . .+. .......++|||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 36899999999999999999999885 46888876433333334321 0000 0 000 00012236999999998
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCC---CCCHHHHhcccceeEecC-CC
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPL-PD 387 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~---~Ld~al~~Rf~~~i~~~~-Pd 387 (498)
+.+ .+++.|+..|+.-. .....+.||+|+|..+ .|.+++..||...+.+.. |+
T Consensus 96 l~~-------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 LDD-------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred CCH-------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 854 35667777775321 1123578888888765 699999999998776654 67
Q ss_pred HHHHHHHHHHhc
Q 010888 388 TEARRAMFESLL 399 (498)
Q Consensus 388 ~~eR~~IL~~~l 399 (498)
.++|.+|++...
T Consensus 163 ~~er~eil~~~~ 174 (589)
T TIGR02031 163 QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHH
Confidence 888999998876
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.9e-11 Score=127.61 Aligned_cols=209 Identities=21% Similarity=0.268 Sum_probs=129.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEeccccchhc-------------ccCcHHHHHHHHHHHHhcCCeE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKW-------------RGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l--~~~~i~v~~s~l~~~~-------------~G~~~~~l~~~f~~a~~~~p~V 313 (498)
...-++++.|.|||||..++|++++.+ ..||+.|||..+.... .|...+..+..++.|.. +.
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---Gt 410 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GT 410 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---Cc
Confidence 344679999999999999999999977 5799999997664321 12222333344444444 57
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh-cccceeE-------ecC
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-RLEKRIL-------VPL 385 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~-Rf~~~i~-------~~~ 385 (498)
||+|||..|+...|. ...+.+.+.-+.-+++.. ...+|.||+||++ +|..-+.. ||.+.+| +.+
T Consensus 411 lFldeIgd~p~~~Qs-----~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~--dl~~lv~~g~fredLyyrL~~~~i~l 482 (606)
T COG3284 411 LFLDEIGDMPLALQS-----RLLRVLQEGVVTPLGGTR-IKVDIRVIAATHR--DLAQLVEQGRFREDLYYRLNAFVITL 482 (606)
T ss_pred cHHHHhhhchHHHHH-----HHHHHHhhCceeccCCcc-eeEEEEEEeccCc--CHHHHHHcCCchHHHHHHhcCeeecc
Confidence 999999998754221 122333333333344444 4557999999998 44443333 6655554 445
Q ss_pred CCHHHHH---HHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC------
Q 010888 386 PDTEARR---AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL------ 456 (498)
Q Consensus 386 Pd~~eR~---~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~------ 456 (498)
|...+|. ..|.+++..... .. ...++..+..|+...|++++|++.++++....++++...
T Consensus 483 P~lr~R~d~~~~l~~~~~~~~~-~~----------~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp 551 (606)
T COG3284 483 PPLRERSDRIPLLDRILKREND-WR----------LQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLP 551 (606)
T ss_pred CchhcccccHHHHHHHHHHccC-CC----------ccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCC
Confidence 6666554 344444433221 11 125667778899999999999999999887655543321
Q ss_pred C--------CCCCCCHHHHHHHHhccCCChh
Q 010888 457 P--------QIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 457 ~--------~~~~It~eD~~~AL~~~~ps~~ 479 (498)
+ ....+..+.+..|+...+-..+
T Consensus 552 ~~l~~~~~~~~~~~~~~~l~~al~~~~~~is 582 (606)
T COG3284 552 PELLEEQATPREDIEKAALLAALQATNGNIS 582 (606)
T ss_pred HHHHhhhcccccchHHHHHHHHHHHcCCCHH
Confidence 0 1223555666666666655543
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-08 Score=101.18 Aligned_cols=144 Identities=13% Similarity=0.198 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 278 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------ 278 (498)
+....+.+...+.. ...++.+||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-----------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 7 LQPTYQQITQAFQQ-----------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred hHHHHHHHHHHHHc-----------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34556666665532 2345789999999999999999999988321
Q ss_pred EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 279 FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 279 ~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
++.+.+.+ ++ .-.-..++.+.+.+. ....-|++||++|.|. ....+.|++.++ .+.
T Consensus 76 ~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~-------------~~AaNaLLKtLE---EPp 135 (325)
T PRK06871 76 FHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT-------------EAAANALLKTLE---EPR 135 (325)
T ss_pred EEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhhC-------------HHHHHHHHHHhc---CCC
Confidence 12221110 11 112334555544443 2344699999999984 346778888887 345
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHh
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 398 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~ 398 (498)
..+++|.+|+.++.+.|.++||+ ..+.|++|+.++-.+.|...
T Consensus 136 ~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 55778889999999999999999 56899999999888888764
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=104.98 Aligned_cols=141 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CCCCCCccccC----cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 212 SPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG----~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
....+|+++.. +..++..+.+.+..+. ....+++|+||||||||+||.+|++++ +..++.++.
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 45567888753 3334444444443221 123689999999999999999999988 677888888
Q ss_pred cccchhcccCcH--HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 285 SSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 285 s~l~~~~~G~~~--~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
.++......... .....+++.. ....+|+|||++..... +.....|+..++.-.....+ +|.|
T Consensus 138 ~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s-----------~~~~~~l~~ii~~R~~~~~p--tiit 202 (248)
T PRK12377 138 PDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET-----------KNEQVVLNQIIDRRTASMRS--VGML 202 (248)
T ss_pred HHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-----------HHHHHHHHHHHHHHHhcCCC--EEEE
Confidence 777654332110 0111223322 34679999999765322 11233455555543322222 4668
Q ss_pred eCCCC-----CCCHHHHhcc
Q 010888 363 TNLPW-----ELDAAMLRRL 377 (498)
Q Consensus 363 Tn~p~-----~Ld~al~~Rf 377 (498)
||... .+..++.+|+
T Consensus 203 SNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 203 TNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred cCCCHHHHHHHhhHHHHHHH
Confidence 98752 2555666665
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=112.82 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=101.7
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE-Eecc--
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISAS-- 285 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~-v~~s-- 285 (498)
.....+.++++++|++...+.++.++..... ...+.+.++|+||||||||++++.+|++++..+++ .+..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3346688999999999999999988754211 12333569999999999999999999998765433 2211
Q ss_pred -ccc-------------hhcccCcHHHHHHHHHHHH----------hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 286 -SVV-------------SKWRGDSEKLIKVLFELAR----------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 286 -~l~-------------~~~~G~~~~~l~~~f~~a~----------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
... ..+. ......+.++..+. .....||+|||++.+... . .+ .+.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~-s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~--------~~-~lq 216 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQ-SQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D--------TR-ALH 216 (637)
T ss_pred cccccccccchhhhhcccccc-chHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h--------HH-HHH
Confidence 000 0011 11223344444443 124579999999987532 1 11 222
Q ss_pred HHHH-HhhCCccCCCcEEEEEEeCCCC----------C----CCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC
Q 010888 342 ELLI-QMDGLTQSDELVFVLAATNLPW----------E----LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 342 ~Ll~-~ld~~~~~~~~viVIaaTn~p~----------~----Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
.++. ... ......+|+++|..+. . |.+++++ |. ..|.|.+.........|+..+...
T Consensus 217 ~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 217 EILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 2333 111 1222223333442221 1 4478886 55 468999999999777777777543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-08 Score=101.36 Aligned_cols=154 Identities=13% Similarity=0.158 Sum_probs=101.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------EEEEeccccchhcccCcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------~i~v~~s~l~~~~~G~~~~~l~~~f~ 304 (498)
+.++.+||+||+|+||+++|.++|+.+-+. ++.+.+..- . ..-.-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHHH
Confidence 445789999999999999999999988321 122211100 0 0012334455444
Q ss_pred HHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccce
Q 010888 305 LAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 380 (498)
Q Consensus 305 ~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~ 380 (498)
.+. .....|++||++|.|. ....+.|++.++ .+...+++|..|+.++.|-|.++||+. .
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq-~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT-------------DAAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCR-L 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC-------------HHHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhccc-c
Confidence 433 3445799999999984 346788999887 345567888899999999999999995 5
Q ss_pred eEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHH
Q 010888 381 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 426 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~ 426 (498)
+.+++|+.++....|.... ... ......++..+.|-.+..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 8999999888888776432 111 11233455556664444443
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=103.14 Aligned_cols=68 Identities=35% Similarity=0.399 Sum_probs=46.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEecccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSV 287 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l 287 (498)
+....+.++|+.++++..--.+.+-. ...-.++++||.||||||||.+|-++|+++| .||..++++++
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk-------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIK-------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHH-------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred EeeccccccChHHHHHHHHHHHHHHh-------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 34446789999999998875544321 1223458999999999999999999999996 78877666554
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.2e-10 Score=108.90 Aligned_cols=132 Identities=27% Similarity=0.388 Sum_probs=89.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcc---CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTG---LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~---~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
-++|++.+|+.|.-++....++-..... ..-.-.++||.||+|||||+||+.+|+.++.||.--++..+.. .|+|+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGE 141 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGE 141 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccch
Confidence 3689999999887555332221111100 1122258999999999999999999999999999999988864 57776
Q ss_pred c-HHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCC
Q 010888 295 S-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 295 ~-~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~ 350 (498)
- +..+..++..+. ....+||+|||||.++.+.....- ..-...-++..||..++|.
T Consensus 142 DVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 142 DVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 4 444455554432 233589999999999876543221 1112345778899999864
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-09 Score=96.13 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=88.2
Q ss_pred CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------e
Q 010888 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------T 278 (498)
Q Consensus 222 G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-----------------------~ 278 (498)
|++++++.|...+.. ...++.+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 788888999887744 234567999999999999999999998721 1
Q ss_pred EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 279 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 279 ~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
++.++...-.. .-....++.+...+.. ...-|++|||+|.|. ....+.|+..|+. ..
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LEe---pp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-------------EEAQNALLKTLEE---PP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS---TT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-------------HHHHHHHHHHhcC---CC
Confidence 23332221100 1123445555554432 345699999999984 4477889999983 34
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecC
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~ 385 (498)
..+.+|.+|+.+..+-+.++||+ ..+.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 55788889999999999999999 4466654
|
... |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=104.71 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=78.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhccc----CcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG----DSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G----~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
...+++|+|+||||||+||.++++++ +.+++.++..++...+.. ........+++... ...+|+|||++.-
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34679999999999999999999987 788999998877654321 11111222333322 3469999999642
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-CC----CCHHHHhcc---cceeEecCCCHHHHHHH
Q 010888 323 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRL---EKRILVPLPDTEARRAM 394 (498)
Q Consensus 323 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~~----Ld~al~~Rf---~~~i~~~~Pd~~eR~~I 394 (498)
... ...+..|+..++....... .+|.|||.+ .. ++.++.+|+ ...+.+.-||. |..+
T Consensus 191 ~~t-----------~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 191 RDT-----------EWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred CCC-----------HHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHH
Confidence 111 2233445555654322222 356688775 22 466788875 23455555554 4444
Q ss_pred HHH
Q 010888 395 FES 397 (498)
Q Consensus 395 L~~ 397 (498)
.+.
T Consensus 256 ~~e 258 (268)
T PRK08116 256 AKE 258 (268)
T ss_pred HHH
Confidence 433
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=108.32 Aligned_cols=145 Identities=26% Similarity=0.324 Sum_probs=92.0
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEec------
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------ 284 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~------ 284 (498)
..|.++.|+..+++.+.-. .....+++|.||||+|||++++.++..+. ...+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 3688889988877765422 23457899999999999999999998652 11222211
Q ss_pred c-----cc-------------chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 285 S-----SV-------------VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 285 s-----~l-------------~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
. .+ .....|.........+..|.. ++|||||++.+. ..+++.|.+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-------------~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-------------RRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-------------HHHHHHHHHH
Confidence 0 00 001112211112234444443 799999998764 3456666666
Q ss_pred hhCCc----------cCCCcEEEEEEeCCCC---------------------CCCHHHHhcccceeEecCCCHH
Q 010888 347 MDGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 347 ld~~~----------~~~~~viVIaaTn~p~---------------------~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
|+.-. ....++.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 64221 1234588999998752 3777999999999999988654
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=104.99 Aligned_cols=162 Identities=25% Similarity=0.320 Sum_probs=107.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec---------
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------- 284 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~--------- 284 (498)
...|..++|++..|..|.-....| .-.++||.|+.|||||+++|+++.-+.-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 467889999999999887654332 33689999999999999999999987211111111
Q ss_pred ----c-------------------ccchhcccCcHHHH-H-----HHHH----------HHHhcCCeEEEEcCccchhhh
Q 010888 285 ----S-------------------SVVSKWRGDSEKLI-K-----VLFE----------LARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 285 ----s-------------------~l~~~~~G~~~~~l-~-----~~f~----------~a~~~~p~VL~IDEiD~l~~~ 325 (498)
. .+...-.|.++..+ . ...+ .++.+ .+||++||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 0 01111123333311 1 1111 11222 2799999998874
Q ss_pred ccccchhhHHHHHHHHHHHHHhh---------CCc-cCCCcEEEEEEeCCC-CCCCHHHHhcccceeEecCC-CHHHHHH
Q 010888 326 RGEARSEHEASRRLKTELLIQMD---------GLT-QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRA 393 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld---------~~~-~~~~~viVIaaTn~p-~~Ld~al~~Rf~~~i~~~~P-d~~eR~~ 393 (498)
..+++.|+..+. |++ ....++++|+|+|.- ..|-+.|++||...+....| +.++|.+
T Consensus 158 -----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 -----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred -----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHH
Confidence 336666666654 221 123468889999886 45999999999999988776 7888999
Q ss_pred HHHHhcCC
Q 010888 394 MFESLLPS 401 (498)
Q Consensus 394 IL~~~l~~ 401 (498)
|.+..+.-
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 99987754
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-08 Score=106.84 Aligned_cols=228 Identities=20% Similarity=0.220 Sum_probs=139.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEeccccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVV 288 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~s~l~ 288 (498)
.+.+.+...+++...+...+.. -.....+.+.|-||||||..++.+-.++ ...++.+|+-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 4555566666666655544321 0122478999999999999999998866 3567888886664
Q ss_pred hh----------cccCcH------HHHHHHHHHH-HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 289 SK----------WRGDSE------KLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 289 ~~----------~~G~~~------~~l~~~f~~a-~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+. +.|... ..+...|... ....++||+|||+|.|.... +.-|+..++...
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdWpt 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDWPT 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcCCc
Confidence 32 112211 1122222211 23457899999999997542 345778888887
Q ss_pred cCCCcEEEEEEeCCCCC----CCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHH
Q 010888 352 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 426 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~~----Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~ 426 (498)
..+..++||+.+|..+. |...+.+|++ ..+.|.+++..+..+|+..++.....-....++-+|++....||.
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD--- 613 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD--- 613 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc---
Confidence 77888888888877543 3334445664 457889999999999999999776322222233334444444432
Q ss_pred HHHHHHHhHHHHHHHHHhhchhccCCCCC----CCCCCCCCHHHHHHHHhccCCChh
Q 010888 427 LVSKEAAMQPLRRLMVLLEGRQEVAPDDE----LPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 427 ~L~~~A~~~a~rrl~~~le~~~~~~~~~~----~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
+||.+++++++.+++.... ......+++-|+.+|++.+..+..
T Consensus 614 ----------aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 614 ----------ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred ----------HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 2333333333333222211 112234899999999999876653
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-09 Score=111.72 Aligned_cols=48 Identities=44% Similarity=0.632 Sum_probs=41.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|.||+|++.+|+.+.-.. ...+++|++||||||||++|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 357999999999999998654 345899999999999999999987654
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-10 Score=97.40 Aligned_cols=110 Identities=31% Similarity=0.352 Sum_probs=60.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc-ccc-hhcccC----cHHHHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV-SKWRGD----SEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s-~l~-~~~~G~----~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
+|||+|+||+|||++|+++|+.++..|..|.+. ++. ++..|. ... ..|+..+. --..|+++||+....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrapp- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAPP- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS-H-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCCH-
Confidence 689999999999999999999999999988764 332 111111 000 00000000 0025999999987754
Q ss_pred ccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCCC-----CCCHHHHhccc
Q 010888 326 RGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW-----ELDAAMLRRLE 378 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p~-----~Ld~al~~Rf~ 378 (498)
+.++.+++.|.... .-..+.+||||-|+.+ .|++++++||-
T Consensus 77 ------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 77 ------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 36777888876321 1234588899999764 58999999983
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-09 Score=97.47 Aligned_cols=126 Identities=25% Similarity=0.359 Sum_probs=79.3
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccchhcccCcHH
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEK 297 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~~~~~G~~~~ 297 (498)
+|.+...+++++.+... .....+|+|+|++||||+++|++++...+ .+++.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHH----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46677777777776442 24457899999999999999999999874 467777776543
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-C------CCC
Q 010888 298 LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W------ELD 370 (498)
Q Consensus 298 ~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~------~Ld 370 (498)
..+++.+ .+++|||+|+|.+... .+..|+..++... ..++.+|+++..+ . .++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH-------------HHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchh
Confidence 2234443 5588999999999643 4455666665332 2334566666543 2 366
Q ss_pred HHHHhcccceeEecCC
Q 010888 371 AAMLRRLEKRILVPLP 386 (498)
Q Consensus 371 ~al~~Rf~~~i~~~~P 386 (498)
+.+..|+.. +.+.+|
T Consensus 122 ~~L~~~l~~-~~i~lP 136 (138)
T PF14532_consen 122 PDLYYRLSQ-LEIHLP 136 (138)
T ss_dssp HHHHHHCST-CEEEE-
T ss_pred HHHHHHhCC-CEEeCC
Confidence 777777743 344444
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=100.19 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---------------------EEE
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN 281 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---------------------~i~ 281 (498)
+..+.+.+...+.. ..-++.+||+||+|+||+++|.++|+.+-+. ++.
T Consensus 9 ~~~~~~~l~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDA-----------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 44666777766532 2345689999999999999999999977321 112
Q ss_pred Ee--ccccchh-cccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 282 IS--ASSVVSK-WRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 282 v~--~s~l~~~-~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
+. +..-..+ ...-.-..++.+.+.+.. ....|++||++|.|. ....+.|++.++. +.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE---Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN-------------RAACNALLKTLEE---PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC-------------HHHHHHHHHHhhC---CC
Confidence 21 1000000 000123345555544432 234699999999984 3467788888873 33
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 425 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL 425 (498)
.++++|.+|+.++.+-|.++||+ ..+.|+.|+.++-...|... ... ..+...++..+.|-.+..+
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 45667778888999999999999 56899999998888777653 111 1123345555665544443
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-09 Score=104.61 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=77.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
..+++|+||||||||+|+.++++++ |..+++++..++........ .......+... ..+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 4689999999999999999999866 77888888888776543211 01122233332 34679999999876543
Q ss_pred cccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC----------CCHHHHhccc---ceeEecCCCHHHHHH
Q 010888 327 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----------LDAAMLRRLE---KRILVPLPDTEARRA 393 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~----------Ld~al~~Rf~---~~i~~~~Pd~~eR~~ 393 (498)
......|+..++..... . -+|.|||.+.. +..++.+|+- ..+.+.-++...+..
T Consensus 183 ----------~~~~~~Lf~lin~R~~~-~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~~ 249 (269)
T PRK08181 183 ----------QAETSVLFELISARYER-R--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRTA 249 (269)
T ss_pred ----------HHHHHHHHHHHHHHHhC-C--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHHH
Confidence 11233444444432222 2 25668887621 3356667762 345555556554443
Q ss_pred H
Q 010888 394 M 394 (498)
Q Consensus 394 I 394 (498)
.
T Consensus 250 ~ 250 (269)
T PRK08181 250 L 250 (269)
T ss_pred H
Confidence 3
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-08 Score=111.28 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=97.9
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhc---------cCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CeEEE
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFN 281 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~---------~~~~~~~~vLL~GppGtGKT~lAraia~~l~-------~~~i~ 281 (498)
-.|.|.+.+|+.+.-.+........... ...+...+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4789999999988755533221100000 1134446899999999999999999998653 34444
Q ss_pred EeccccchhcccC--cHHHH-HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------
Q 010888 282 ISASSVVSKWRGD--SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------- 350 (498)
Q Consensus 282 v~~s~l~~~~~G~--~~~~l-~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------- 350 (498)
+.+..... ..+. .+..+ .+.+. ....++++|||+|.+... .+..|+..|+.-
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCC
Confidence 44433211 0000 00000 01111 122479999999998543 445566666421
Q ss_pred --ccCCCcEEEEEEeCCCC-------------CCCHHHHhccccee-EecCCCHHHHHHHHHHhc
Q 010888 351 --TQSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLL 399 (498)
Q Consensus 351 --~~~~~~viVIaaTn~p~-------------~Ld~al~~Rf~~~i-~~~~Pd~~eR~~IL~~~l 399 (498)
..-+.++.||||+|+.+ .|++++++||+... ....|+.+.-..|-++.+
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 11234688999999752 27899999998764 446677666556555544
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=96.94 Aligned_cols=144 Identities=16% Similarity=0.114 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------eE
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------TF 279 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-----------------------~~ 279 (498)
+.+..+.+...+.. .+.++.+||+||.|+||+++|+++|+.+-+ .+
T Consensus 8 l~~~~~~l~~~~~~-----------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDA-----------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 44666667665532 244578999999999999999999997732 12
Q ss_pred EEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 280 FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 280 i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+.+.+.. .++. -.-..++.+.+.+. .....|++||++|.|. ....+.|++.++. +..
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE---Pp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN-------------ESASNALLKTLEE---PAP 137 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC-------------HHHHHHHHHHhcC---CCC
Confidence 2222211 0010 12234455444433 2335799999999984 3467788888873 445
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
++++|..|+.++.+-|.++||+ ..+.++.|+.++..+.|..
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 5778889999999999999999 5689999999988888765
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-07 Score=97.42 Aligned_cols=239 Identities=17% Similarity=0.197 Sum_probs=148.2
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccccchh-
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~- 290 (498)
-..++|.+..++.+++++...+. ...+.++.+.|-||||||.+...+.... +...+++||.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 35689999999999999877654 3455789999999999999998776655 224588898764311
Q ss_pred ---------c----cc-CcHHHHHHHH-HHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 291 ---------W----RG-DSEKLIKVLF-ELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 291 ---------~----~G-~~~~~l~~~f-~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
+ .+ .........| ....+.. +-||++||+|.|....+. .++..++.-...+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-------------vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-------------VLYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-------------eeeeehhcccCCc
Confidence 1 11 1111222222 2233333 679999999999844322 1333333334456
Q ss_pred CcEEEEEEeCCCCCCCHHHHh---c---ccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHH
Q 010888 355 ELVFVLAATNLPWELDAAMLR---R---LEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIR 426 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~---R---f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~--l~~La~~t~g~s~~dL~ 426 (498)
..+++|+.+|..+.-|..|-+ | -...+.|++++.++-.+||...+.........+ +.-.|++..|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 668888889987665544333 2 246789999999999999999998776654433 5567788888776 676
Q ss_pred HHH---HHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 427 LVS---KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 427 ~L~---~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
.++ ++|...+-.+..... .....+...-.....|..+++..++.++.-+..
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~--~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKIL--DDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--ccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 643 333332222211111 001112221112245678899999888765543
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-08 Score=97.94 Aligned_cols=201 Identities=20% Similarity=0.274 Sum_probs=113.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccch
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~~ 289 (498)
..||...+++.+... ...+.+|. .....++||+|++|.|||++++.....- ..|++.+.+..-.+
T Consensus 35 rWIgY~~A~~~L~~L-~~Ll~~P~-----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRL-EELLEYPK-----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHH-HHHHhCCc-----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 456666666555543 22222332 2234689999999999999999998755 25677776532211
Q ss_pred --------------hc--ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC
Q 010888 290 --------------KW--RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 353 (498)
Q Consensus 290 --------------~~--~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 353 (498)
.+ .....+....+....+..++.+|+|||++.++.... . -+..++..+..+.+.
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~----~qr~~Ln~LK~L~Ne 178 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------R----KQREFLNALKFLGNE 178 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------H----HHHHHHHHHHHHhhc
Confidence 11 011223333445666677788999999999864321 1 122233333333222
Q ss_pred CCcEEEEEE-eCCC---CCCCHHHHhcccceeEecCC-CHHHHHHHHHHhcCCCCCCCC--CCHHH----HHHHhcCCcH
Q 010888 354 DELVFVLAA-TNLP---WELDAAMLRRLEKRILVPLP-DTEARRAMFESLLPSQTGEES--LPYDL----LVERTEGYSG 422 (498)
Q Consensus 354 ~~~viVIaa-Tn~p---~~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~--~~l~~----La~~t~g~s~ 422 (498)
-. +.+|+. |... -.-|+.+.+||.. +.+|.- ..++...++..+-...++... ..-.+ +-..+.|.+|
T Consensus 179 L~-ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 179 LQ-IPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred cC-CCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 22 223333 2211 2358899999954 455442 334455666666555554422 22233 4455677664
Q ss_pred HHHHHHHHHHHhHHHH
Q 010888 423 SDIRLVSKEAAMQPLR 438 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~r 438 (498)
++..+++.|+..|++
T Consensus 257 -~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 257 -ELSRLLNAAAIAAIR 271 (302)
T ss_pred -HHHHHHHHHHHHHHh
Confidence 788999999998886
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=103.72 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=92.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------------------------EEEEeccccc---------------
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT-------------------------FFNISASSVV--------------- 288 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~-------------------------~i~v~~s~l~--------------- 288 (498)
+.++++||+||+|+||+++|+++|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445789999999999999999999988432 1122111000
Q ss_pred ---hh-----cccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCc
Q 010888 289 ---SK-----WRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 356 (498)
Q Consensus 289 ---~~-----~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 356 (498)
++ ...-.-..++.+.+.+. .....|++||++|.|. ....+.||+.++ .+...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLE---EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-------------VAAANALLKTLE---EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-------------HHHHHHHHHHhc---CCCcC
Confidence 00 00012234455544433 2334699999999984 346678888887 34555
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHh
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 398 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~ 398 (498)
+++|.+|+.++.|.|.++||+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 788889999999999999999 67999999999998888764
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=97.83 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=81.7
Q ss_pred CCCCCCccccC----cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 212 SPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG----~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
....+|+++.- +..+...+.+.+... .....+++|+|+||||||+|+.++++++ +..++.++.
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~----------~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEF----------DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhh----------ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 34567888753 223444444433221 1123589999999999999999999988 778888988
Q ss_pred cccchhcccCc---HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 285 SSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 285 s~l~~~~~G~~---~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
+++.....+.. ......+++... ...+|+|||++..... +....+ +...++.-..... .+|.
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s--------~~~~~~---l~~Ii~~Ry~~~~--~tii 200 (244)
T PRK07952 136 ADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTES--------RYEKVI---INQIVDRRSSSKR--PTGM 200 (244)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCCC--------HHHHHH---HHHHHHHHHhCCC--CEEE
Confidence 88775443211 111223333333 4689999999875321 111223 3333332222222 3566
Q ss_pred EeCCCC-----CCCHHHHhcc
Q 010888 362 ATNLPW-----ELDAAMLRRL 377 (498)
Q Consensus 362 aTn~p~-----~Ld~al~~Rf 377 (498)
|||... .+...+.+|+
T Consensus 201 tSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 201 LTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred eCCCCHHHHHHHhChHHHHHH
Confidence 888752 2556666666
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.5e-08 Score=98.77 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=49.2
Q ss_pred Cc-cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------eEEEEec
Q 010888 217 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 284 (498)
Q Consensus 217 ~~-~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-------~~i~v~~ 284 (498)
|+ ++.|+++++.++.+.+..... +.....+.++|+||||||||++|+++++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 66 899999999999988755431 12234467899999999999999999999965 7777765
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=105.00 Aligned_cols=99 Identities=27% Similarity=0.498 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc-hhcccC-cHHHHHHHHHHHH----hcCCeEEEEcCccchhhh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGD-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~-~~~~G~-~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~ 325 (498)
.+|||.||+|+|||+||+.+|+-++.||.-.+|..+. ..|+|+ .+..+..++..|. ..+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 5899999999999999999999999999999999886 457775 4555666665543 234589999999999843
Q ss_pred ccccc-hhhHHHHHHHHHHHHHhhCC
Q 010888 326 RGEAR-SEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 326 r~~~~-~~~~~~~~i~~~Ll~~ld~~ 350 (498)
...-. ...-..+-++..||..++|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 32111 11111245778899998864
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-08 Score=97.72 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=109.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------EEE
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------FFN 281 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------~i~ 281 (498)
+..+.++..++++++++++...+.+....+ .-.+.|+|||||||||....+.|..+-.+ +..
T Consensus 31 wvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 31 WVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred CccCCCCchhhhHhcCCchhhHHHHhccCC------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 345567788999999999999888874321 12389999999999999999999988543 223
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHh-------cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~-------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
+++++-.+. + ..+..-..|...+. ..+.++++||+|++..+ .+++|-..++.+ .
T Consensus 99 lnaSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-------------AQnALRRviek~---t 159 (360)
T KOG0990|consen 99 LNASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-------------AQNALRRVIEKY---T 159 (360)
T ss_pred hhccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-------------HHHHHHHHHHHh---c
Confidence 344433222 1 11222233444442 25679999999999644 344444444433 2
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 405 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 405 (498)
.++.+...+|.+..+.+++++||.. +.|.+-+...-...+.++++.....
T Consensus 160 ~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 160 ANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred cceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchhh
Confidence 3456667889999999999999965 5565556666666677776554443
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=102.71 Aligned_cols=113 Identities=21% Similarity=0.316 Sum_probs=70.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC---cHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~---~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
..+++|+||||||||+|+.+||+++ |..+++++..++....... ........++.. ....+|+|||++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 3789999999999999999999987 7888999988876544211 000111112222 2457999999977632
Q ss_pred hccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-CC----CCHHHHhccc
Q 010888 325 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE 378 (498)
Q Consensus 325 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~~----Ld~al~~Rf~ 378 (498)
. ....+.|+..++.......+ +|.|||.+ .. +++++.+|+.
T Consensus 261 t-----------~~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 261 T-----------EFSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred C-----------HHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 2 22334455555543322222 45577764 22 4667777763
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-07 Score=88.09 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=119.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-C--CeE---------
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTF--------- 279 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~--~~~--------- 279 (498)
..+.+++.+.+.++....++..... ..-.++++|||+|+||-|.+-++-+++ | .+=
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 4566788899999998888876521 112589999999999999999999988 2 111
Q ss_pred -----------------EEEeccccchhcccCcH-HHHHHHHHHHHhcC---------CeEEEEcCccchhhhccccchh
Q 010888 280 -----------------FNISASSVVSKWRGDSE-KLIKVLFELARHHA---------PSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 280 -----------------i~v~~s~l~~~~~G~~~-~~l~~~f~~a~~~~---------p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
+++++++ .|... -.++.+++...+.. ..+++|.|+|.|..+
T Consensus 75 tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d------- 142 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD------- 142 (351)
T ss_pred cCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH-------
Confidence 1222222 23222 23455555544332 359999999998543
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HH
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YD 411 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~ 411 (498)
.+..|-..|+.+. .++.+|..+|....+-+++++|+ ..+.+|.|+.++-..++...+.+..+....+ +.
T Consensus 143 ------AQ~aLRRTMEkYs---~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 143 ------AQHALRRTMEKYS---SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred ------HHHHHHHHHHHHh---cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 4444555555333 23667888999889999999999 6689999999999999999998877764432 34
Q ss_pred HHHHHhcC
Q 010888 412 LLVERTEG 419 (498)
Q Consensus 412 ~La~~t~g 419 (498)
.+++.+.|
T Consensus 213 rIa~kS~~ 220 (351)
T KOG2035|consen 213 RIAEKSNR 220 (351)
T ss_pred HHHHHhcc
Confidence 45554443
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=89.96 Aligned_cols=89 Identities=24% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC-------------CCCCCHHHHhc
Q 010888 310 APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-------------PWELDAAMLRR 376 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~-------------p~~Ld~al~~R 376 (498)
-|+||||||++.|- -.....|...+++ .-.++ ||.+||+ |..+++.+++|
T Consensus 296 vPGVLFIDEVhMLD-------------iEcFTyL~kalES---~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------------IECFTYLHKALES---PIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhhh-------------hHHHHHHHHHhcC---CCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 48899999998772 2344555555552 22334 5566664 34588999999
Q ss_pred ccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHH
Q 010888 377 LEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVER 416 (498)
Q Consensus 377 f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~ 416 (498)
+ .++..-+++.++-++|++.+.....+..+. .++.++..
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 8 567777778888889999988777666443 34444443
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=101.97 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=44.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..|+..|++++|++++++.|...+.. .++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 45678899999999999999886642 24799999999999999999999774
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=96.46 Aligned_cols=132 Identities=16% Similarity=0.202 Sum_probs=89.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------eEEEEecccc---chhc-ccCcHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSV---VSKW-RGDSEKLI 299 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~-------------------------~~i~v~~s~l---~~~~-~G~~~~~l 299 (498)
+.++.+||+||+|+|||++|+.+|+.+.+ .++.+++..- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44578999999999999999999998732 1334433110 0000 00123445
Q ss_pred HHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh
Q 010888 300 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 375 (498)
Q Consensus 300 ~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~ 375 (498)
+.+.+.+.. ....|++||+++.+-. ...+.++..++... ..+.+|.+|+.+..+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-------------~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL-------------QAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH-------------HHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHH
Confidence 666555543 3346999999998843 35566777777543 225566688888899999999
Q ss_pred cccceeEecCCCHHHHHHHHHH
Q 010888 376 RLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 376 Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
|+ ..+.|++|+.++....|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 5688999999888877765
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=105.86 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=92.9
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc-------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV------- 288 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~------- 288 (498)
.|+|++++...+.+++....... .+. .+...+||.||.|+|||-+|+++|..+ .-.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl---~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL---KDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc---CCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 58899999999999886643211 111 467889999999999999999999988 5678999998632
Q ss_pred --hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--c------cCCCcEE
Q 010888 289 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSDELVF 358 (498)
Q Consensus 289 --~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~------~~~~~vi 358 (498)
..|+|..+. ..+.+..+....+||+|||||... ..+++.|++.+|.- . -.-.+++
T Consensus 639 sp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh-------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 639 SPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAH-------------PDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred CCcccccchhH--HHHHHHHhcCCceEEEEechhhcC-------------HHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 235554333 456777778888999999998764 33666677777632 1 1224688
Q ss_pred EEEEeCC
Q 010888 359 VLAATNL 365 (498)
Q Consensus 359 VIaaTn~ 365 (498)
||.|+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 8989775
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-08 Score=98.37 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC-cHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~-~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
....+++|+||||||||++|.+++.++ |..+..+++.++....... ........+... ..+.+|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 345789999999999999999999876 6777777777665443211 001111222222 3468999999987743
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-08 Score=94.42 Aligned_cols=72 Identities=28% Similarity=0.464 Sum_probs=48.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
....+++|+||||||||++|.++++++ |.++..++.+++........ .......+.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 345799999999999999999999877 88899999988876543210 011222333333 3579999999654
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=92.02 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=52.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHH-HHH-HHHHHHHhcCCeEEEEcCccchh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEK-LIK-VLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~-~l~-~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
...+++|+||||||||+||.||++++ |.+++.++.+++.......... ... .+.... ....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCcc
Confidence 45799999999999999999999988 7889999998887664432221 111 111112 234799999997764
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.4e-08 Score=94.93 Aligned_cols=75 Identities=25% Similarity=0.317 Sum_probs=50.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC-cHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~-~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
....+++|+||||||||+++.+++.+. |..+..+++.++...+... ....+...+... ...+.+|+|||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 345789999999999999999998764 7778888877765443211 011123334332 24568999999987643
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=93.00 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
..+++|+||||||||+|+.+|++++ +..+++++..++........ ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4689999999999999999999986 56778888766654432111 111122222 23458999999944
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-07 Score=89.32 Aligned_cols=180 Identities=21% Similarity=0.273 Sum_probs=92.6
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---eEEEEec-cccc--------
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISA-SSVV-------- 288 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~---~~i~v~~-s~l~-------- 288 (498)
+|.+...+.|.+.+.. .+...++|+||.|+|||++++.+.+.... ..+++.. ....
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5667777777765532 23468999999999999999999998832 1122211 0000
Q ss_pred -------------h-hc------------ccCcHHHHHHHHHHHHhc-CCeEEEEcCccchh-hhccccchhhHHHHHHH
Q 010888 289 -------------S-KW------------RGDSEKLIKVLFELARHH-APSTIFLDEIDAII-SQRGEARSEHEASRRLK 340 (498)
Q Consensus 289 -------------~-~~------------~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~-~~r~~~~~~~~~~~~i~ 340 (498)
. .. .......+..+++..... ...||+|||++.+. .... ...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~ 141 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFL 141 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHH
Confidence 0 00 011233445555555443 34899999999997 2111 13455
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC--CCCCCHHHH
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLL 413 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~--~~~~~l~~L 413 (498)
..+...++.........+|+++++.. ..-...+..|+.. +.+++-+.++..++++..+..... ..+.+++.+
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i 220 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEI 220 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 55666666533333434444444321 0112234457766 899999999999999987655411 134456667
Q ss_pred HHHhcCCc
Q 010888 414 VERTEGYS 421 (498)
Q Consensus 414 a~~t~g~s 421 (498)
...+.|..
T Consensus 221 ~~~~gG~P 228 (234)
T PF01637_consen 221 YSLTGGNP 228 (234)
T ss_dssp HHHHTT-H
T ss_pred HHHhCCCH
Confidence 77676643
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=93.81 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=114.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE-ecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v-~~s~l 287 (498)
.....+.+.+||+-...-.++++.++..... ...+.+-+||+||||||||++++.+|++++..+.+- ++..+
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~ 82 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSF 82 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCc
Confidence 3456678889999999888888888865321 112334678899999999999999999998877653 22221
Q ss_pred c------hhcccCcH------HH---HHHH-HHHHH-----------hcCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 288 V------SKWRGDSE------KL---IKVL-FELAR-----------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 288 ~------~~~~G~~~------~~---l~~~-f~~a~-----------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
. ..+.+... .. ...+ +...+ ...+.||+|||+-.+.... ...+.
T Consensus 83 ~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~---------~~~f~ 153 (519)
T PF03215_consen 83 RESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD---------TSRFR 153 (519)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh---------HHHHH
Confidence 0 11111100 01 1111 11111 1245799999997654321 13344
Q ss_pred HHHHHHhhCCccCCCcEEEEEE-e------CCC--------CCCCHHHHhcc-cceeEecCCCHHHHHHHHHHhcCCC--
Q 010888 341 TELLIQMDGLTQSDELVFVLAA-T------NLP--------WELDAAMLRRL-EKRILVPLPDTEARRAMFESLLPSQ-- 402 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaa-T------n~p--------~~Ld~al~~Rf-~~~i~~~~Pd~~eR~~IL~~~l~~~-- 402 (498)
+.|...+..- ...++++|.+ + |.. ..+++.++... -..|.|.+-...-.+..|+..+...
T Consensus 154 ~~L~~~l~~~--~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 154 EALRQYLRSS--RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred HHHHHHHHcC--CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 4454444421 1115666655 1 111 13567777632 2557776666655555555554433
Q ss_pred ---C--CCCC-CC-HHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 403 ---T--GEES-LP-YDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 403 ---~--~~~~-~~-l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
. ...+ .. ++.|+..+. +||+.++......+.
T Consensus 232 ~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 232 SSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1 1111 22 556666544 488877765554444
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-07 Score=80.44 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=47.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
+.++|+||.|+|||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999999999999886 88888888766432111111 222222222225689999999887
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-07 Score=93.14 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcH-HHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~-~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
..++++|+||+|||||+|+.++|+++ |.++..++.+++......... ......++.. ....+|+|||++.-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 45799999999999999999999998 778888888777654332111 1122333333 34579999999764
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.7e-07 Score=77.47 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=48.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCeEEEEeccccchh--------------cc--cCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WR--GDSEKLIKVLFELA 306 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l--------~~~~i~v~~s~l~~~--------------~~--G~~~~~l~~~f~~a 306 (498)
.+.++++||||+|||++++.+++.+ ..+++.+++...... .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3679999999999999999999988 678888877543310 01 12233344455555
Q ss_pred HhcCCeEEEEcCccchh
Q 010888 307 RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~ 323 (498)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55555699999999874
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.4e-07 Score=96.95 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=86.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccchhcccCc--HHHH--------HHHHHHHHhcCCeEEEEcCc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEI 319 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~~~~G~~--~~~l--------~~~f~~a~~~~p~VL~IDEi 319 (498)
.+|+|.|++|||||+++++++.-+. .||..+..+.-....+|.. +..+ ..++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 6899999999999999999999884 5888887765555555543 1111 12222222 379999999
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCC---CCCCHHHHhcccceeEecCC
Q 010888 320 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 320 D~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~P 386 (498)
..+. ..+++.|++.|+.-. ....+.++|++-|.. +.|++++++||...+.+..|
T Consensus 103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 8774 457788888886321 112346777764332 34999999999999999988
Q ss_pred CHHH
Q 010888 387 DTEA 390 (498)
Q Consensus 387 d~~e 390 (498)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=91.66 Aligned_cols=172 Identities=23% Similarity=0.247 Sum_probs=89.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec-cccch--hcc-
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA-SSVVS--KWR- 292 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~-s~l~~--~~~- 292 (498)
+|.|++++|+.|.-.+.-- ..+.+.. .....-++||+|.||||||.+.+.+++-+..-.+.-.. +.-.+ .++
T Consensus 430 sIye~edvKkglLLqLfGG--t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGG--TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcC--CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 6788999999887554321 1111121 13444689999999999999999999977443321110 00000 000
Q ss_pred --cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH-HhhCC-ccCCCcEEEEEEeCCCC-
Q 010888 293 --GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI-QMDGL-TQSDELVFVLAATNLPW- 367 (498)
Q Consensus 293 --G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~-~ld~~-~~~~~~viVIaaTn~p~- 367 (498)
+++.+.+-+- ...-....++..|||+|+|........ +++ +..+-+. .-.|+ ..-+.+.-|+|++|+..
T Consensus 508 rd~dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvL--hEv---MEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 KDPDTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVL--HEV---MEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred ecCccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHH--HHH---HHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 0111110000 000112357899999999943221111 111 1111111 11122 23344466889998542
Q ss_pred ------------CCCHHHHhccccee-EecCCCHHHHHHHHHHh
Q 010888 368 ------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESL 398 (498)
Q Consensus 368 ------------~Ld~al~~Rf~~~i-~~~~Pd~~eR~~IL~~~ 398 (498)
.|++.|++||+.++ .+..||...-+.+-.++
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 28999999998754 34556666444444443
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-05 Score=77.07 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=77.8
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC------------CCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~------------p~~Ld~al~~Rf~ 378 (498)
|+||||||++.|--. ..+-|-..++ ..-.+++ |.+||+ |..++-.+++|.
T Consensus 289 pGVLFIDEvHMLDIE-------------cFsFlNrAlE---~d~~Pii-imaTNrgit~iRGTn~~SphGiP~D~lDR~- 350 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIE-------------CFSFLNRALE---NDMAPII-IMATNRGITRIRGTNYRSPHGIPIDLLDRM- 350 (454)
T ss_pred cceEEEeeehhhhhH-------------HHHHHHHHhh---hccCcEE-EEEcCCceEEeecCCCCCCCCCcHHHhhhh-
Confidence 789999999876311 1222222222 2223344 445543 456888999998
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCC
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 457 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~ 457 (498)
.++...+++.++-+.||+.++.......+.+ ++.|......-+-+.--.|+..|...+.+|.-
T Consensus 351 lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~---------------- 414 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG---------------- 414 (454)
T ss_pred heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC----------------
Confidence 6677788899999999999987766554433 33333332222333333455555555555411
Q ss_pred CCCCCCHHHHHHHHhccCCC
Q 010888 458 QIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 458 ~~~~It~eD~~~AL~~~~ps 477 (498)
..+..+|++.+.+-+-..
T Consensus 415 --~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 415 --KVVEVDDIERVYRLFLDE 432 (454)
T ss_pred --ceeehhHHHHHHHHHhhh
Confidence 127889999888766443
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-07 Score=91.25 Aligned_cols=137 Identities=22% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC-e--EEEEeccccchhcccCcHHHHHHHHHHH-----------HhcCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKT-T--FFNISASSVVSKWRGDSEKLIKVLFELA-----------RHHAPSTIF 315 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~-~--~i~v~~s~l~~~~~G~~~~~l~~~f~~a-----------~~~~p~VL~ 315 (498)
..+++||.||+|||||++++..-+.+.. . ...++++... +...++.+.+.. ...+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 3579999999999999999998877643 2 2334443321 222222222111 012336999
Q ss_pred EcCccchhhhccccchhhHHHHHHHHHHHHHhh--CCccC-------CCcEEEEEEeCCCC---CCCHHHHhcccceeEe
Q 010888 316 LDEIDAIISQRGEARSEHEASRRLKTELLIQMD--GLTQS-------DELVFVLAATNLPW---ELDAAMLRRLEKRILV 383 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld--~~~~~-------~~~viVIaaTn~p~---~Ld~al~~Rf~~~i~~ 383 (498)
|||+..-.++.-+.. ...+-|-+.++ |.-.. -.++.+|++++.+. .+++++.|.| ..+.+
T Consensus 106 iDDlN~p~~d~ygtq-------~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYGTQ-------PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNI 177 (272)
T ss_dssp EETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE-
T ss_pred ecccCCCCCCCCCCc-------CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEe
Confidence 999987765543221 12222222232 21111 13577888888643 4888999888 67899
Q ss_pred cCCCHHHHHHHHHHhcC
Q 010888 384 PLPDTEARRAMFESLLP 400 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~ 400 (498)
+.|+.+....|+..++.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999888888777664
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=75.07 Aligned_cols=140 Identities=19% Similarity=0.233 Sum_probs=74.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC--C------e-EEEEeccccchhcc------------cCcHHHHHH-HHHHHHhcC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK--T------T-FFNISASSVVSKWR------------GDSEKLIKV-LFELARHHA 310 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~--~------~-~i~v~~s~l~~~~~------------G~~~~~l~~-~f~~a~~~~ 310 (498)
-++|+|+||+|||++++.++..+. . + .+.+++.+....-. ......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998771 1 1 23333333221100 001111111 122333455
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhccc--ceeEecCCCH
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE--KRILVPLPDT 388 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~--~~i~~~~Pd~ 388 (498)
..+|+||.+|.+...... .........+...+......+ +.++.|++. .... .+.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~--~~liit~r~-~~~~-~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPG--VKLIITSRP-RAFP-DLRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCC--CeEEEEEcC-ChHH-HHHHhcCCCcEEEECCCCH
Confidence 679999999999754221 011222233333333211222 334444433 2222 2444333 3478888899
Q ss_pred HHHHHHHHHhcCC
Q 010888 389 EARRAMFESLLPS 401 (498)
Q Consensus 389 ~eR~~IL~~~l~~ 401 (498)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-05 Score=78.56 Aligned_cols=170 Identities=12% Similarity=0.050 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE--EEec--------------cc
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--NISA--------------SS 286 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i--~v~~--------------s~ 286 (498)
+..+++.++..+.. .+.++.+||+|| +||+++|+.+|+.+-+.-- .-.| .+
T Consensus 7 q~~~~~~L~~~~~~-----------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 44566666665533 244578999996 6899999999997732100 0000 11
Q ss_pred cchh-ccc--CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 287 VVSK-WRG--DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 287 l~~~-~~G--~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
+.-- ..| -.-..++.+...+.. ....|++||++|.|. ....+.|++.++. +..++++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~-------------~~AaNaLLKtLEE---Pp~~t~~ 137 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH-------------VNAANSLLKVIEE---PQSEIYI 137 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC-------------HHHHHHHHHHhcC---CCCCeEE
Confidence 1000 001 123445555544432 234699999999985 3356788888873 4445778
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
|..|+.++.+-|.++||+ ..+.|+. +.+...+++... ... .+...++....| +++....+.+
T Consensus 138 iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~~~----g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 138 FLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLLEQK----GLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHHHHc----CCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 888888999999999999 5577765 555555555422 222 222334444555 5555555554
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.9e-06 Score=82.89 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe----------------EEEEeccccchhcccCcHHHHHHHHHHHHh----
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------FFNISASSVVSKWRGDSEKLIKVLFELARH---- 308 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~----------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~---- 308 (498)
.-++.+||+||+|+||+.+|.++|+.+-+. ++.+.+.. .+.. -.-..++.+.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 445789999999999999999999987431 11121100 0000 123344555444432
Q ss_pred cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCC
Q 010888 309 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~P 386 (498)
...-|++||++|.|. ....+.|++.++. +..++++|..|+.++.+.|.++||+ ..+.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt-------------~~AaNaLLK~LEE---Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMT-------------LDAISAFLKVLED---PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcC-------------HHHHHHHHHHhhc---CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 334699999999985 3366788888873 4455778888888999999999999 44666654
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=93.83 Aligned_cols=169 Identities=24% Similarity=0.260 Sum_probs=96.3
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE-ecc---ccchh
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SAS---SVVSK 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v-~~s---~l~~~ 290 (498)
.-+|.|.+.+|+.+.-.+.... .+.... ..+..-+|||.|.||||||.|.+.+++-+-..++.- .++ .|...
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 4578999999999885543321 221111 134457899999999999999999999875444322 111 11111
Q ss_pred cccCcHHHHHHHHHHH---HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh---------CC-ccCCCcE
Q 010888 291 WRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD---------GL-TQSDELV 357 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a---~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld---------~~-~~~~~~v 357 (498)
.+-... ...+.-.+ -...++|.+|||+|.|... -...+...|+ |+ ..-+.+.
T Consensus 363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchhh
Confidence 100000 00000000 1134689999999988432 2233444443 11 1112345
Q ss_pred EEEEEeCCCC-------------CCCHHHHhcccceeEe-cCCCHHHHHHHHHHhcCCC
Q 010888 358 FVLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 358 iVIaaTn~p~-------------~Ld~al~~Rf~~~i~~-~~Pd~~eR~~IL~~~l~~~ 402 (498)
-|+||+|+.. .|++.+++||+..+.+ ..|+.+.-..+.++.+..+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 5788888774 2789999999976655 3466665555555555433
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.4e-07 Score=86.91 Aligned_cols=77 Identities=25% Similarity=0.387 Sum_probs=51.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH------HhCCeEEEEeccccchh---------cccCcHHHHHHHHHHHHhcCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSK---------WRGDSEKLIKVLFELARHHAPSTI 314 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~------~l~~~~i~v~~s~l~~~---------~~G~~~~~l~~~f~~a~~~~p~VL 314 (498)
....+||.||+|.||+.+|+.|.. ++..+|++|||..+.+. ..|........--...+....++|
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 345799999999999999999965 45789999999877543 122211111111112233345799
Q ss_pred EEcCccchhhhc
Q 010888 315 FLDEIDAIISQR 326 (498)
Q Consensus 315 ~IDEiD~l~~~r 326 (498)
|+|||..+..+.
T Consensus 287 fldeigelgade 298 (531)
T COG4650 287 FLDEIGELGADE 298 (531)
T ss_pred ehHhhhhcCccH
Confidence 999999886553
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-05 Score=75.49 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=85.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-----------e--EEEEeccccchhcccCcHHHHHHHHHHHHh-----cCCe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKT-----------T--FFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPS 312 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~-----------~--~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~-----~~p~ 312 (498)
.+.+||+|+.|+||+.+|+.+++.+-+ | +..++. .+. ...-..++.+.+...- ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~--~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDK--DLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCC--cCCHHHHHHHHHHhccCCcccCCce
Confidence 467889999999999999999998722 1 122220 011 0122344444444321 3557
Q ss_pred EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHH
Q 010888 313 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 392 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~ 392 (498)
|++||++|.+. ....+.|+..++. ++..+++|..|+.+..+-+.+++|+ ..+.+.+|+.++..
T Consensus 93 vvII~~~e~m~-------------~~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS-------------NSLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC-------------HHHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999998873 3356678888874 3444667777778888999999999 56899999888877
Q ss_pred HHHHH
Q 010888 393 AMFES 397 (498)
Q Consensus 393 ~IL~~ 397 (498)
..|..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 77665
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8e-07 Score=95.17 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=101.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec----cccchh
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA----SSVVSK 290 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~----s~l~~~ 290 (498)
.-+..|.|.+.+|.-+.-.+.--......-.-.++..-+|+|.|.||||||-+.++++.-+-..+|.-.. +.|...
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 3367899999999998855533221111101114556789999999999999999999877554443211 111111
Q ss_pred cccCcHHHHHHHHHH--HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh---------CC-ccCCCcEE
Q 010888 291 WRGDSEKLIKVLFEL--ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD---------GL-TQSDELVF 358 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~--a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld---------~~-~~~~~~vi 358 (498)
.+.+.+.. ...++. .--...+|..|||+|+|-.+. ...+.+.|+ |+ ..-+.+.-
T Consensus 422 VvkD~esg-df~iEAGALmLADnGICCIDEFDKMd~~d-------------qvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 422 VVKDEESG-DFTIEAGALMLADNGICCIDEFDKMDVKD-------------QVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred EEecCCCC-ceeeecCcEEEccCceEEechhcccChHh-------------HHHHHHHHHhheehheecceEEeecchhh
Confidence 11000000 000100 011234799999999995321 122333343 11 11123355
Q ss_pred EEEEeCCCC-------------CCCHHHHhcccce-eEecCCCHHHHHHHHHHhcCCCC
Q 010888 359 VLAATNLPW-------------ELDAAMLRRLEKR-ILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 359 VIaaTn~p~-------------~Ld~al~~Rf~~~-i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
||||+|+.. .+++++.+||+.. +.+..|++..-..|-++++..+.
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~ 546 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHR 546 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhc
Confidence 788888763 2789999999854 46677888888888877775543
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=77.38 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=74.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
.+-.+.||+|||||..++.+|+.+|.+++..+|++.. ....+.+++.-+... .+-+++||++.+..+.-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~-GaW~cfdefnrl~~~vL---- 101 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQS-GAWLCFDEFNRLSEEVL---- 101 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHH----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhc-CchhhhhhhhhhhHHHH----
Confidence 5677899999999999999999999999999998764 334556666544443 37899999998854311
Q ss_pred hhHHHHHHHHHHHHHhhCCcc----------CCCcEEEEEEeCCC----CCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 332 EHEASRRLKTELLIQMDGLTQ----------SDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~ld~~~~----------~~~~viVIaaTn~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
+-. ......+...+..-.. -+...-+..|.|.. ..|++.++.-| +.+.+..||...-.+++-
T Consensus 102 -S~i-~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 102 -SVI-SQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp -HHH-HHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHHH
T ss_pred -HHH-HHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHHH
Confidence 001 1111222222221110 11224455566644 45888888877 668999999776555544
|
|
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-06 Score=87.76 Aligned_cols=175 Identities=21% Similarity=0.233 Sum_probs=94.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
+|.|...+|..+.-.+..-..........++...+|||.|.||||||.+.|.+++-....++...-..-. +|-+...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa---vGLTa~v 526 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA---VGLTAYV 526 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc---cceeEEE
Confidence 6889999999998665332211111111245556899999999999999999999876655543221110 0000000
Q ss_pred -----HHHHHHHH---HhcCCeEEEEcCccchhhhccccchhhHHHHHH-----HHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 299 -----IKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-----KTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 299 -----l~~~f~~a---~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-----~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
.+.+.-.+ -....+|.+|||+|+|-... ...-|++..+. ...+...++ .+..||+|+|+
T Consensus 527 ~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD--RtSIHEAMEQQSISISKAGIVtsLq------ArctvIAAanP 598 (854)
T KOG0477|consen 527 RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD--RTSIHEAMEQQSISISKAGIVTSLQ------ARCTVIAAANP 598 (854)
T ss_pred eeCCccceeeeccCeEEEccCceEEeehhhhhcccc--cchHHHHHHhcchhhhhhhHHHHHH------hhhhhheecCC
Confidence 00000000 01224789999999995432 12223322211 111222222 23557888887
Q ss_pred C---C----------CCCHHHHhcccceeEecC---CCHHHH--HHHHHHhcCCCCC
Q 010888 366 P---W----------ELDAAMLRRLEKRILVPL---PDTEAR--RAMFESLLPSQTG 404 (498)
Q Consensus 366 p---~----------~Ld~al~~Rf~~~i~~~~---Pd~~eR--~~IL~~~l~~~~~ 404 (498)
. + .|...+++||+....++. |..+++ .-++..+.+.++.
T Consensus 599 igGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~ 655 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPS 655 (854)
T ss_pred CCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCc
Confidence 3 2 367789999986555544 444443 3355555554443
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.2e-06 Score=85.91 Aligned_cols=210 Identities=19% Similarity=0.186 Sum_probs=116.2
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~ 295 (498)
-+|.|.+++|+.|.-.+.-..... ...+ .+..-+|+|.|.||+-||.|.+.|.+-.-...+..... +..+|-+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccc
Confidence 378999999999987665422111 1111 44556899999999999999999998765544443221 1223333
Q ss_pred HHHHHHHH-HHH-------HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC-ccCCCcEEEEEEeCCC
Q 010888 296 EKLIKVLF-ELA-------RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLP 366 (498)
Q Consensus 296 ~~~l~~~f-~~a-------~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-~~~~~~viVIaaTn~p 366 (498)
+...+.-. .+. --...+|..|||+|++..... ..-|++..+..-.+- =.|+ +.-+.+..|++++|+.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR--tAIHEVMEQQTISIa--KAGI~TtLNAR~sILaAANPa 492 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR--TAIHEVMEQQTISIA--KAGINTTLNARTSILAAANPA 492 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh--HHHHHHHHhhhhhhh--hhccccchhhhHHhhhhcCcc
Confidence 33222100 000 011247899999999964311 112222221110000 0122 2234456688888876
Q ss_pred C-------------CCCHHHHhcccceeEe-cCCCHHHHHHHHHHhcCCCC--CCC-----CCCHH------HHHHHhcC
Q 010888 367 W-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQT--GEE-----SLPYD------LLVERTEG 419 (498)
Q Consensus 367 ~-------------~Ld~al~~Rf~~~i~~-~~Pd~~eR~~IL~~~l~~~~--~~~-----~~~l~------~La~~t~g 419 (498)
+ .|+++|++||+..+.+ ..|+.+.-..+.++..--+. -.+ ..+.+ .++++...
T Consensus 493 yGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P 572 (721)
T KOG0482|consen 493 YGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNP 572 (721)
T ss_pred ccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCC
Confidence 4 2899999999876544 55877666666666542111 111 12222 25566666
Q ss_pred CcHHHHHHHHHHHHhHH
Q 010888 420 YSGSDIRLVSKEAAMQP 436 (498)
Q Consensus 420 ~s~~dL~~L~~~A~~~a 436 (498)
..+.++..-+..|-...
T Consensus 573 ~vp~~l~dyi~~AYv~~ 589 (721)
T KOG0482|consen 573 VVPEALADYITGAYVEL 589 (721)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 67777766555554443
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-05 Score=78.50 Aligned_cols=121 Identities=11% Similarity=0.019 Sum_probs=79.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec--------------cccch---hcccCcHHHHHHHHHHHH----
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------------SSVVS---KWRGDSEKLIKVLFELAR---- 307 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~--------------s~l~~---~~~G~~~~~l~~~f~~a~---- 307 (498)
.+++.+||+||+|+||..+|.++|+.+-+.--.-.| .++.- ....-....++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 567889999999999999999999977221000001 01100 000112233444443332
Q ss_pred -hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCC
Q 010888 308 -HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 308 -~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~P 386 (498)
....-|++|+++|.|. ....+.|+..++ .+..++++|..|+.++.+-+.++||+.. +.++.+
T Consensus 85 e~~~~KV~II~~ae~m~-------------~~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-------------KQSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC-------------HHHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 1235799999999884 346678888887 3455678888999999999999999944 666555
|
|
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=79.85 Aligned_cols=163 Identities=21% Similarity=0.308 Sum_probs=102.3
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHH---HhCCeEEEEeccccc-----
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV----- 288 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~---~l~~~~i~v~~s~l~----- 288 (498)
...+.|..+..+.+.+++..-. ......+|++.||.|+|||++.-.... +.|-.++.+......
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~--------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTI--------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHH--------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3457787777777777664422 123457899999999999998766644 456677665442211
Q ss_pred ----------------hhcccCcHHHHHHHHHHHHhc----CCeEEE-EcCccchhhhccccchhhHHHHHHHHHHHHHh
Q 010888 289 ----------------SKWRGDSEKLIKVLFELARHH----APSTIF-LDEIDAIISQRGEARSEHEASRRLKTELLIQM 347 (498)
Q Consensus 289 ----------------~~~~G~~~~~l~~~f~~a~~~----~p~VL~-IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~l 347 (498)
.+..|.....+..+....+.. +..|+| +||+|..++.. + +..+++.+
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------r--QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------R--QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------h--hHHHHHHH
Confidence 122244444444444433321 122555 57999887542 2 23355555
Q ss_pred hCCccCCCcEEEEEEeCCCCC---CCHHHHhcccce-eEecCC-CHHHHHHHHHHhc
Q 010888 348 DGLTQSDELVFVLAATNLPWE---LDAAMLRRLEKR-ILVPLP-DTEARRAMFESLL 399 (498)
Q Consensus 348 d~~~~~~~~viVIaaTn~p~~---Ld~al~~Rf~~~-i~~~~P-d~~eR~~IL~~~l 399 (498)
|-......++.||+.|.+.+. |..++.+||... |+++++ +.++-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 544455667889988877644 678999999766 555554 6788888888887
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-05 Score=77.13 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=82.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH--hCCe---EEEEeccccc----------hh---c-----ccCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVV----------SK---W-----RGDSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~--l~~~---~i~v~~s~l~----------~~---~-----~G~~~~~l~~~f~~ 305 (498)
...+.|.|+|++|+|||+||+.+++. .... .+.++.+.-. .. . ...........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 44567899999999999999999987 4322 2333332111 00 0 11112223333333
Q ss_pred HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecC
Q 010888 306 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~ 385 (498)
.-...+++|+||+++... ....+...+.. ...+..||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~---------------~~~~l~~~~~~---~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE---------------DLEELREPLPS---FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH---------------HH-------HC---HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc---------------ccccccccccc---ccccccccccccccccc-cccccc-cccccccc
Confidence 334458999999997642 11112222211 11123455577653221 111111 35688888
Q ss_pred CCHHHHHHHHHHhcCCCC----CCCCCCHHHHHHHhcCCcHHHHHHH
Q 010888 386 PDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLV 428 (498)
Q Consensus 386 Pd~~eR~~IL~~~l~~~~----~~~~~~l~~La~~t~g~s~~dL~~L 428 (498)
.+.++-.+++........ ...+.....+++.+.|. |-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 899999999999876544 11222356678777764 4444443
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=70.99 Aligned_cols=72 Identities=25% Similarity=0.418 Sum_probs=48.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----------------------cc--CcHHHHHHHHHHH
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------RG--DSEKLIKVLFELA 306 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~----------------------~G--~~~~~l~~~f~~a 306 (498)
++|+||||+|||+++..++... +.+.+.++........ .. ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 5677777654332110 00 1111122234455
Q ss_pred HhcCCeEEEEcCccchhhh
Q 010888 307 RHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~ 325 (498)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677899999999988654
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=87.97 Aligned_cols=176 Identities=18% Similarity=0.246 Sum_probs=97.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE---EEEecccc-
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---FNISASSV- 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~---i~v~~s~l- 287 (498)
.+...+++++|.+..++++.+.+... ....+-+-|+|++|+||||+|+++++.+...| +.++...+
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 35566899999999999998876321 22346788999999999999999998874332 11211000
Q ss_pred --chhcc-------cCc----HHHHH-------------HHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 288 --VSKWR-------GDS----EKLIK-------------VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 288 --~~~~~-------G~~----~~~l~-------------~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
...+. ... ...+. ...+..-..++.+|+|||++.. ...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~---------------~~l~ 312 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ---------------DVLD 312 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------HHHH
Confidence 00000 000 00001 1111222345679999998643 1223
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCH----HHHHH
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY----DLLVE 415 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l----~~La~ 415 (498)
.+....+.. ..+ -.||.||.+ ..+.+ ..+..+.++.|+.++..+++..++-..... ..++ .++++
T Consensus 313 ~L~~~~~~~-~~G--srIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 313 ALAGQTQWF-GSG--SRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHhhCccC-CCC--cEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 333222211 122 234556664 23332 356778899999999999998876443222 1222 23555
Q ss_pred HhcCCc
Q 010888 416 RTEGYS 421 (498)
Q Consensus 416 ~t~g~s 421 (498)
++.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 566643
|
syringae 6; Provisional |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.8e-05 Score=69.78 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...++++|+||+||||++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999887
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.4e-07 Score=92.12 Aligned_cols=168 Identities=25% Similarity=0.270 Sum_probs=84.0
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc-----cchhcc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS-----VVSKWR 292 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~-----l~~~~~ 292 (498)
.+|.|.+.+|..+.-.+..............+..-++||.|.||||||.|.+.+++-..... ++++.. +.....
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 36889888888776433222111100001133456899999999999999998876554433 333221 111100
Q ss_pred ---cCcHHHHH-HHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC----cc------CCCcEE
Q 010888 293 ---GDSEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ------SDELVF 358 (498)
Q Consensus 293 ---G~~~~~l~-~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~------~~~~vi 358 (498)
...+..+. +.+-.| ..+|++|||+|.+-.+ ....|++.|+.- .. -+.+.-
T Consensus 103 ~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp CCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred cccccceeEEeCCchhcc---cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 00000111 122222 3489999999998432 345566666531 11 123466
Q ss_pred EEEEeCCCC-------------CCCHHHHhcccceeEe-cCCCHHHHHHHHHHhcCCC
Q 010888 359 VLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 359 VIaaTn~p~-------------~Ld~al~~Rf~~~i~~-~~Pd~~eR~~IL~~~l~~~ 402 (498)
|+|++|+.. .+++.+++||+..+.+ ..|+.+.-..+.++.+..+
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 889998764 3778999999987655 5567666666666665544
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-05 Score=79.15 Aligned_cols=186 Identities=21% Similarity=0.219 Sum_probs=96.3
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 196 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 196 e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
|..+...+-..++...-.+.---+|.|.+++|+.+.-.+-.- ..+....+ ....-+|||.|.|||-||.|.+-+-+
T Consensus 309 EEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgG--srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEk 386 (729)
T KOG0481|consen 309 EEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGG--SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEK 386 (729)
T ss_pred HHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcC--ccccCCCcceeccceeEEEecCCchhHHHHHHHHHh
Confidence 334444443444433322223347899999999998765331 11112222 44556899999999999999999877
Q ss_pred HhCCeEEEEeccccchhcccCcHHHHH-----HHHH---HHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 274 ECKTTFFNISASSVVSKWRGDSEKLIK-----VLFE---LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 274 ~l~~~~i~v~~s~l~~~~~G~~~~~l~-----~~f~---~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
-.-.-+|.-....- -.|-++..++ ..+- ..-....+|++|||+|+|-.+.. ..-|++..+..-.+
T Consensus 387 vsPIaVYTSGKGSS---AAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR--VAIHEAMEQQTISI-- 459 (729)
T KOG0481|consen 387 VSPIAVYTSGKGSS---AAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR--VAIHEAMEQQTISI-- 459 (729)
T ss_pred cCceEEEecCCCcc---cccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh--hHHHHHHHhhhHHH--
Confidence 55433332211000 0000000000 0000 00012347999999999954311 12222222111111
Q ss_pred HhhCC-ccCCCcEEEEEEeCCCC----C---------CCHHHHhcccceeEecCCCHHH
Q 010888 346 QMDGL-TQSDELVFVLAATNLPW----E---------LDAAMLRRLEKRILVPLPDTEA 390 (498)
Q Consensus 346 ~ld~~-~~~~~~viVIaaTn~p~----~---------Ld~al~~Rf~~~i~~~~Pd~~e 390 (498)
.=.|+ +.-+.+.-|+|++|.+. + +-+.+++||+.++-+..-..++
T Consensus 460 AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~ 518 (729)
T KOG0481|consen 460 AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEE 518 (729)
T ss_pred hhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcch
Confidence 11133 22334456788888762 1 4478999999887776654443
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00019 Score=76.36 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=44.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..+.+.+++.=...-+.++++++..... +. .....+-+||+||+||||||.++.+++++|..+++-+
T Consensus 76 y~P~t~eeLAVHkkKI~eVk~WL~~~~~----~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 76 YKPRTLEELAVHKKKISEVKQWLKQVAE----FT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cCcccHHHHhhhHHhHHHHHHHHHHHHH----hc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3455566666666666666666541110 01 1223356889999999999999999999998887554
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=97.99 E-value=2e-05 Score=81.86 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC-eEEEEeccccchhcccC------cHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSKWRGD------SEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~-~~i~v~~s~l~~~~~G~------~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
..+++|++||||+|+|||+|.-...+.+.. .-..++-.+++...... ....+..+.+.... ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 456799999999999999999999988743 22222222222211100 01112222222222 23599999996
Q ss_pred chhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 321 AIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 321 ~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
--- -....++..|+..+= ..++++|+|+|.+
T Consensus 138 V~D----------iaDAmil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD----------IADAMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred ccc----------hhHHHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 431 112345555555442 2347889999986
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=73.30 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=53.8
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc-hhccc----------------------CcHHH
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-SKWRG----------------------DSEKL 298 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~-~~~~G----------------------~~~~~ 298 (498)
.++.++..-++|+||||+|||+++..++.+. +.+.++++..++. ..... +....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 3456777889999999999999999988754 6678888876521 10000 00111
Q ss_pred HHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 299 IKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 299 l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
+..+...+....+.+|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33334444555789999999998864
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.8e-05 Score=75.23 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+++|+|+||||||++|.+++++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999875
|
|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=77.46 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=58.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc--cchh--------cccCcHHHHHHHHHHHH--hcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS--VVSK--------WRGDSEKLIKVLFELAR--HHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~--l~~~--------~~G~~~~~l~~~f~~a~--~~~p~VL~IDE 318 (498)
+..+||||+||+|||++|+.++.. ..++..+.+. +.+. .....-..+...+.... ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 467999999999999999998631 2223332211 0000 01112222333333332 24568999999
Q ss_pred ccchhh------hccccc--hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 319 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 319 iD~l~~------~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
++.+.. .+..+. ........+...++..+..+...+.+|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 999865 221111 011122334555666665554555556555443
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.2e-05 Score=68.89 Aligned_cols=23 Identities=48% Similarity=0.908 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 010888 254 ILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~ 276 (498)
|.|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00077 Score=65.80 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=93.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccc-----hh----ccc--------CcHHHHHHHHHHHH-hcCC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVV-----SK----WRG--------DSEKLIKVLFELAR-HHAP 311 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~-----~~----~~G--------~~~~~l~~~f~~a~-~~~p 311 (498)
-+.++|+.|+|||.+.|++..-++ ...++++...+. .. ... ..++.-+.+..... ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 577999999999999997766552 222344432221 11 111 11122223333333 3456
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH--------HHHhcccceeEe
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA--------AMLRRLEKRILV 383 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~--------al~~Rf~~~i~~ 383 (498)
-++++||++.+... ..+.+.-..+.........-++..... .|.+ ++..|+...+++
T Consensus 133 v~l~vdEah~L~~~-------------~le~Lrll~nl~~~~~~~l~ivL~Gqp--~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLNDS-------------ALEALRLLTNLEEDSSKLLSIVLIGQP--KLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhChh-------------HHHHHHHHHhhcccccCceeeeecCCc--ccchhhchHHHHhhhheEEEEEec
Confidence 89999999988543 122222222211222222223323322 2222 222377666788
Q ss_pred cCCCHHHHHHHHHHhcCCCCCC----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 384 PLPDTEARRAMFESLLPSQTGE----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~----~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
++.+.++-...++++++..... .+..+..+...+.| .|..+.+++..|...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~ 254 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAY 254 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 8888888888888888665333 23346667777777 56778888877776654
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=67.30 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=46.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC-----------------------cH-----
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD-----------------------SE----- 296 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~-----------------------~~----- 296 (498)
+|++||||||||+++..++.+. |.+.++++..+-..... |. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887755 66777776532221100 00 00
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 297 KLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 297 ~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123344444566789999999988754
|
A related protein is found in archaea. |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=84.64 Aligned_cols=135 Identities=24% Similarity=0.232 Sum_probs=90.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------hhcc-----cCcHHHHHHHHHHHHhcCCeEEEEcCc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKWR-----GDSEKLIKVLFELARHHAPSTIFLDEI 319 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~~~~-----G~~~~~l~~~f~~a~~~~p~VL~IDEi 319 (498)
.+++||-|.||+|||.++.++|+..|..++++|.++-. +.+. |+....-...+...+. ..-+++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehh
Confidence 46899999999999999999999999999999987432 2211 2222111223333333 356999999
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHhhCC-----------ccCCCcEEEEEEeCCCC------CCCHHHHhcccceeE
Q 010888 320 DAIISQRGEARSEHEASRRLKTELLIQMDGL-----------TQSDELVFVLAATNLPW------ELDAAMLRRLEKRIL 382 (498)
Q Consensus 320 D~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-----------~~~~~~viVIaaTn~p~------~Ld~al~~Rf~~~i~ 382 (498)
.... ..+++.|-..+|.. -.-..+..|.||-|+-+ .|+..+..|| ..++
T Consensus 1621 NLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~ 1686 (4600)
T COG5271 1621 NLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVK 1686 (4600)
T ss_pred hhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEE
Confidence 5432 33444444444421 11234567777766543 4999999999 5688
Q ss_pred ecCCCHHHHHHHHHHhcCC
Q 010888 383 VPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 383 ~~~Pd~~eR~~IL~~~l~~ 401 (498)
+...+.++...|.......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ecccccchHHHHHHhhCCc
Confidence 9999989988888877644
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=75.31 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CeEEEEeccccc----------hhccc------CcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVV----------SKWRG------DSEKLIKVLFELA 306 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l----~-~~~i~v~~s~l~----------~~~~G------~~~~~l~~~f~~a 306 (498)
......++|.||+|+||||++..+|..+ | ..+..++...+. +...| .....+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 4455789999999999999999999864 3 344445443321 00001 01111222222
Q ss_pred HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHH
Q 010888 307 RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 373 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al 373 (498)
+.....+|+||.......+ ......+..+.+.......++|+.+|+..+.+...+
T Consensus 212 ~l~~~DlVLIDTaG~~~~d------------~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRD------------RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HhcCCCEEEEcCCCCCccc------------HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 2234589999999654221 123334444444433445578888888777766543
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.8e-05 Score=85.30 Aligned_cols=201 Identities=20% Similarity=0.169 Sum_probs=119.8
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccC-chhhccC--CCCCc-eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL--LSPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~-~~~~~~~--~~~~~-~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
+.+..++.|.......+..++...-.. ...+... ..... .+++.||||+|||+.++.+|.++|..+++.|+++..+
T Consensus 316 p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS 395 (871)
T KOG1968|consen 316 PTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS 395 (871)
T ss_pred cccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccc
Confidence 344566777666666666665543111 1111111 11112 3699999999999999999999999999999987765
Q ss_pred hccc-----C--cHHHHHHHHH---H--HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcE
Q 010888 290 KWRG-----D--SEKLIKVLFE---L--ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 357 (498)
Q Consensus 290 ~~~G-----~--~~~~l~~~f~---~--a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v 357 (498)
+... . ....+...+. . .......||++||+|.+... .+.....+...+. ...+
T Consensus 396 k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~----------dRg~v~~l~~l~~-----ks~~ 460 (871)
T KOG1968|consen 396 KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE----------DRGGVSKLSSLCK-----KSSR 460 (871)
T ss_pred ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch----------hhhhHHHHHHHHH-----hccC
Confidence 4331 1 1111222220 0 01112249999999998752 1223333443333 1123
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
-+|+++|...........|-...++|+.|+.+....-+..++...... .+..++++.+.+ ++||++.+....
T Consensus 461 Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 461 PLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred CeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 467788887666555555655789999999988777666665444433 344566677655 568877555433
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.4e-05 Score=66.79 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
++|.||||+||||+|+.+++.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776654
|
... |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00024 Score=68.80 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=33.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++.++..-++|+||||+|||+++..++.+. +.+.++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345666788999999999999999998755 6788888876
|
|
| >PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.6e-05 Score=60.02 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 010888 461 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 493 (498)
Q Consensus 461 ~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g 493 (498)
+|+++||..||++++||++. ++.+|++|+++||
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 59999999999999999885 6999999999998
|
It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A .... |
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0042 Score=64.02 Aligned_cols=172 Identities=16% Similarity=0.099 Sum_probs=90.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC-------------------------------
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD------------------------------- 294 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~------------------------------- 294 (498)
.++..+.|.||..+|||++...+.+.+ |...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 446789999999999999999998766 7788888876542211000
Q ss_pred cHHHHHHHHHH---HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--cCCCc-EEEEEEeCCCCC
Q 010888 295 SEKLIKVLFEL---ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDEL-VFVLAATNLPWE 368 (498)
Q Consensus 295 ~~~~l~~~f~~---a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~-viVIaaTn~p~~ 368 (498)
........|+. .....|-||+|||+|.+..... ........|-...+.-. ..... +++++.+..+.
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~- 180 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY- 180 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc-
Confidence 11111222322 1224678999999999975311 11222222222222111 11122 33333333222
Q ss_pred CCHHH-Hh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 369 LDAAM-LR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 369 Ld~al-~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
+.... .+ .+...+.++.-+.++-..+++.+-.. .. ...++.+-..+.|.. .=+..+|...
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgGhP-~Lv~~~~~~l 243 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGGHP-YLVQKACYLL 243 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 11111 12 23445666767888888887766322 11 222777777787743 3333344433
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00041 Score=74.27 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=56.6
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC--------cHHHHHHHHHHHHh
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARH 308 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~--------~~~~l~~~f~~a~~ 308 (498)
++..+..-++|+|+||+|||+++..++... +.+.++++..+...... |. .+..+..+++....
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 345667789999999999999999998866 67888888755432211 10 11123455566666
Q ss_pred cCCeEEEEcCccchhhh
Q 010888 309 HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~ 325 (498)
..|.+|+||++..+...
T Consensus 155 ~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSP 171 (446)
T ss_pred hCCCEEEEechhhhccc
Confidence 78899999999988653
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00059 Score=71.53 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=62.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeccccc--h--------h------cccCcHHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVV--S--------K------WRGDSEKLIKVLFELAR 307 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~l~--~--------~------~~G~~~~~l~~~f~~a~ 307 (498)
+..++|.||+|+||||++..+|..+ +..+..+++.... . . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4679999999999999999999865 2344444432211 0 0 1112223333333333
Q ss_pred hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHH
Q 010888 308 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 372 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~a 372 (498)
....+|+||.++....+ ...+..+...++........++|+.+|.....+...
T Consensus 253 -~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~ 305 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEI 305 (388)
T ss_pred -CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHH
Confidence 34689999999876421 112334444444333333557788777776666643
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=78.15 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
..+..+.++|+||||||||+++.+|++.++...+.||++.-. .+ |...-....-+.+|||+-.-....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k----------s~--FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK----------LN--FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch----------hH--HHhhhhhhceEEEeeecccccccc
Confidence 345557899999999999999999999997777778754321 11 222222222578888884332211
Q ss_pred cccchhhHHHHHHHHHHHHHhhCC-ccC------CC----cEEEEEEeCCCCCCCHHHHhcccceeEecC
Q 010888 327 GEARSEHEASRRLKTELLIQMDGL-TQS------DE----LVFVLAATNLPWELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~-~~~------~~----~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~ 385 (498)
.. ...+... .-...|-..+||. ... +. --..|.|||. +.++..+.-||...+.|..
T Consensus 495 ~~-Lp~G~~~-dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 495 KD-LPSGQGM-NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cc-CCccccc-chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 10 0000000 0123345556655 110 00 0123447775 4578888889988888765
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00044 Score=67.52 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=48.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-----------------------------ccC
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-----------------------------RGD 294 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~-----------------------------~G~ 294 (498)
..++...+++.||||||||+++..++... +.+.++++..+-.... .+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 35666789999999999999986655533 5666666643211100 000
Q ss_pred --cHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 295 --SEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 295 --~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
....+..+........|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12333444555555678999999998764
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00046 Score=72.09 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=55.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC--------cHHHHHHHHHHHHhc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 309 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~--------~~~~l~~~f~~a~~~ 309 (498)
+..+..-++|+|+||+|||+++..++... +.+.++++..+-..... |. .+..+..+.+.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45666789999999999999999998765 45788887654322110 10 112244556666677
Q ss_pred CCeEEEEcCccchhhh
Q 010888 310 APSTIFLDEIDAIISQ 325 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~ 325 (498)
.|.+|+||++..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999988643
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00036 Score=79.16 Aligned_cols=163 Identities=23% Similarity=0.354 Sum_probs=108.7
Q ss_pred CCccccCc-HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEec
Q 010888 216 KWESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISA 284 (498)
Q Consensus 216 ~~~~IvG~-~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~ 284 (498)
.++.++|. ++-.+.+.+.+.. ...++-+|.|.||+|||.++.-+++.. +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~R------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILSR------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHhc------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778786 5555566655532 222688999999999999999999977 345666666
Q ss_pred cccc--hhcccCcHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 285 SSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 285 s~l~--~~~~G~~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
..+. .++.|+.+..++.+.+.+. .....||||||++.+........ .-...+ ++..+- .+++ +.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-----~~d~~n-lLkp~L---~rg~-l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-----AIDAAN-LLKPLL---ARGG-LWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-----HHHHHH-hhHHHH---hcCC-eEEEe
Confidence 5443 4577889999999999888 45667999999999976643311 111222 222221 1222 66676
Q ss_pred EeC-CC----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 362 ATN-LP----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 362 aTn-~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
||. .. ..=+|++-+||+. +.++.|+.+.-..||+.....
T Consensus 322 atT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhh
Confidence 654 22 2358899999954 788999887766676665544
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=67.02 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
..+++.||||+||||+|+.+++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999888774
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00051 Score=66.07 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=32.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+..-++|+|+||+|||+++..+|.+. +.+.++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345666779999999999999999998766 5677777653
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0002 Score=66.53 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.++|.|+||+||||+|+.++..++.+.+.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999888776533
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=79.09 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=48.5
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEec
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 284 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~ 284 (498)
..|+|+.|++++++++.+.+..... ++.....-++|.||||+|||+||+.|++.+ ..+++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3488999999999999987743221 122344678899999999999999999987 356666544
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=67.75 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=57.1
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHh---CCeEEEEeccccchhcc----cC-cHH------------HHHHHHHHHHhcCCe
Q 010888 254 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWR----GD-SEK------------LIKVLFELARHHAPS 312 (498)
Q Consensus 254 vLL~GppGtGKT~lArai-a~~l---~~~~i~v~~s~l~~~~~----G~-~~~------------~l~~~f~~a~~~~p~ 312 (498)
.+++|.||+|||+.|-.. .... |.+++. |...+.-... +. ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987555 4332 666554 5442221110 00 000 000111111112468
Q ss_pred EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCC
Q 010888 313 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~P 386 (498)
+|+|||+..+.+.+...... ....+..+.. .+....-|+.+|..+..+|+.+++..+..+.+.-+
T Consensus 82 liviDEa~~~~~~r~~~~~~-------~~~~~~~l~~--hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-------VPEIIEFLAQ--HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T-----------HHHHGGGG--CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccccc-------chHHHHHHHH--hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 99999999998886652110 0112233332 23334667889999999999999877766666544
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00053 Score=70.02 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=54.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
++.++.+-++|+||||||||+|+..++.+. +.+.+++++.+.... .....+..+..+....
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 356777789999999999999988876654 667777766432210 1112333343344445
Q ss_pred HhcCCeEEEEcCccchhhh
Q 010888 307 RHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~ 325 (498)
+...+.+|+||-+..+.+.
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 5667899999999998764
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.9e-05 Score=67.85 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++..++|+|+||||||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 457899999999999999999999999888854
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=62.64 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.-.+++||+|+|||+++..++.++ +..++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999999999888876 556565543
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00045 Score=80.93 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=90.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc------chhcccCcHH---HHHHHHHHHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV------VSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l------~~~~~G~~~~---~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
.-.+||.||+.+|||.++..+|++.|..|+++|-.+- .+.|+..... ...+++-.|..+. --|++||+..
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeecccc
Confidence 3569999999999999999999999999999986432 3333322111 1122333333222 4589999965
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhC-----------CccCCCcEEEEEEeCCCC------CCCHHHHhcccceeEec
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDG-----------LTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVP 384 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-----------~~~~~~~viVIaaTn~p~------~Ld~al~~Rf~~~i~~~ 384 (498)
.+.+ +++.|-..+|. +..+....++.||-|+|. .|+.|++.|| ..++|.
T Consensus 967 ApTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFd 1032 (4600)
T COG5271 967 APTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFD 1032 (4600)
T ss_pred CcHH-------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-Hhhhcc
Confidence 5422 33334444432 222344577777778774 3899999999 558888
Q ss_pred CCCHHHHHHHHHHhcCC
Q 010888 385 LPDTEARRAMFESLLPS 401 (498)
Q Consensus 385 ~Pd~~eR~~IL~~~l~~ 401 (498)
.-..++...||...++-
T Consensus 1033 dipedEle~ILh~rc~i 1049 (4600)
T COG5271 1033 DIPEDELEEILHGRCEI 1049 (4600)
T ss_pred cCcHHHHHHHHhccCcc
Confidence 87888999999887744
|
|
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00022 Score=67.93 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=62.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
-++|+||+|||||.+|-++|++.|.|++..+.-.......-.+.+....-+... .=++|||-..--+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~-----~RiyL~~r~l~~G~------- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGT-----RRIYLDDRPLSDGI------- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT------EEEES----GGG-S-------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHccc-----ceeeeccccccCCC-------
Confidence 478999999999999999999999999999876554433211222111111111 12888865322111
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhc-----cc-ceeEecCCCHHHHHHHHHHhcCCC
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRR-----LE-KRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~R-----f~-~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
-......+.|+..++.+.. .+.+ |+ -.-....+.....++ |. ....+++|+.+.-..-.+.+.+++
T Consensus 71 -i~a~ea~~~Li~~v~~~~~-~~~~-Il-EGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 71 -INAEEAHERLISEVNSYSA-HGGL-IL-EGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp ---HHHHHHHHHHHHHTTTT-SSEE-EE-EE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHhccc-cCce-EE-eCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 1123345567777777765 3333 33 222222333333333 22 334668888877665555554443
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0031 Score=66.62 Aligned_cols=120 Identities=20% Similarity=0.171 Sum_probs=69.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
-++|+||.+||||++++.+........++++..+........ ....+ .+..+.......||||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~-~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLR-AYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHH-HHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999999988886656667665554332211 11112 22222222447999999987632
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC---CCCCHHHHhcccceeEecCCCHHHHHH
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRA 393 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~Pd~~eR~~ 393 (498)
+...+-...|... . .++ |++++.. ..+.+.+..|. ..+.+.+.+..+...
T Consensus 109 ------W~~~lk~l~d~~~--~-~v~-itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ------WERALKYLYDRGN--L-DVL-ITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ------HHHHHHHHHcccc--c-eEE-EECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2222222333111 1 343 3333332 22344455575 667778888888754
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=64.86 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=51.6
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------------------------------
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------------------------------ 292 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------------------------------ 292 (498)
++.+++..++++|+||+|||+++..++.+. +.+.++++..+-...+.
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 346777889999999999999999997653 67777776533211100
Q ss_pred ---cCcHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 293 ---GDSEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 293 ---G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
......+..+........|.+++||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0012233344444555678999999998663
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00076 Score=68.93 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=54.0
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
+++++.+-+.|+||||||||+++..++.+. +...++++..+-... .....+..+..+-..+
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 346677789999999999999999987654 677778876432110 0112233333333344
Q ss_pred HhcCCeEEEEcCccchhhh
Q 010888 307 RHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~ 325 (498)
+...+.+|+||-+-.+.+.
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 5667899999999998763
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00056 Score=68.09 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=60.9
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEE--ecccc----
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI--SASSV---- 287 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v--~~s~l---- 287 (498)
.+.|+.-+++.+...+...+..+. -..|-.+=|||+|||||..+++.||+.+ ..+++.. ...++
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 477888888888887766554332 1223345579999999999999999977 2233211 11111
Q ss_pred -chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 288 -VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 288 -~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
...|.. +....+...+.....++.++||+|.|.+.
T Consensus 158 ~ie~Yk~---eL~~~v~~~v~~C~rslFIFDE~DKmp~g 193 (344)
T KOG2170|consen 158 KIEDYKE---ELKNRVRGTVQACQRSLFIFDEVDKLPPG 193 (344)
T ss_pred HHHHHHH---HHHHHHHHHHHhcCCceEEechhhhcCHh
Confidence 112221 22233444455566689999999999654
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00015 Score=67.30 Aligned_cols=23 Identities=52% Similarity=0.804 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=67.03 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=56.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE-EEEeccccch-------hcccCcHHHHHHHHHHHHhcCCeEEEEcCc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSVVS-------KWRGDSEKLIKVLFELARHHAPSTIFLDEI 319 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~-i~v~~s~l~~-------~~~G~~~~~l~~~f~~a~~~~p~VL~IDEi 319 (498)
..+++|+.+||+-|.|||+|.-.....+..+- ..++--.++. ...|.+ .-+..+-.... ....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 45779999999999999999999988774322 2222222211 111222 11111111111 22359999998
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 320 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 320 D~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.--- -.+ ..++..|+..+= ..+|.+++|+|.+
T Consensus 140 ~VtD------I~D----AMiL~rL~~~Lf-----~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EVTD------IAD----AMILGRLLEALF-----ARGVVLVATSNTA 171 (367)
T ss_pred eecC------hHH----HHHHHHHHHHHH-----HCCcEEEEeCCCC
Confidence 5321 111 334445554442 2247889999875
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=63.36 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.8
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++.+++..+|++||||||||+++..++.+. |.+.++++..
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 3457788899999999999999998776542 6677777653
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=66.05 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=89.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch---------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--------- 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~--------- 289 (498)
.+.+.+...+.+...+-.. .-.-|..+.|+|-+|||||.+++.+.+.++.+.+.+++-+...
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCC---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 4556777778887765221 1134567899999999999999999999999999998854321
Q ss_pred ------hcccCcH----HHHHH---HHHH---HHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc
Q 010888 290 ------KWRGDSE----KLIKV---LFEL---ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 352 (498)
Q Consensus 290 ------~~~G~~~----~~l~~---~f~~---a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~ 352 (498)
...|... ..+.. .+.. +... ..-.|++|.+|.+... ...+...++..-+ +.+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~e-l~~ 146 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYE-LLN 146 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHH-HhC
Confidence 1112111 11211 2222 2222 3468899999998411 1334444443322 222
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHh----cccceeEecCCCHHHHHHHHHHhc
Q 010888 353 SDELVFVLAATNLPWELDAAMLR----RLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 353 ~~~~viVIaaTn~p~~Ld~al~~----Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
.+. +.++.+.-.+ ...... -....++||.|+.++-..|+..--
T Consensus 147 ~~~-i~iils~~~~---e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 147 EPT-IVIILSAPSC---EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CCc-eEEEEecccc---HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 222 2222222211 111111 123567899999999998887644
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00025 Score=62.27 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=40.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.|.|+.-+++.+...+...+..++ -..|.-+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 688999999999988877654331 1222345589999999999999999986
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=63.87 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=31.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---C------CeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~------~~~i~v~~s~ 286 (498)
++.++..-+.|+||||+|||+++..++... + ...++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 346666789999999999999999998764 3 5667777643
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00064 Score=73.72 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeE-EEEec
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISA 284 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~-i~v~~ 284 (498)
+..++++|+||||||||+++-+|++.++... ..+|.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3346899999999999999999999986444 33654
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=66.94 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=38.2
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEecccc
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 287 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l 287 (498)
++|.++..+++...+. .. ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6888999999988764 11 12345789999999999999999998877433 666666554
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00037 Score=61.95 Aligned_cols=33 Identities=42% Similarity=0.658 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
+++.||||+||||+|+.+++.++ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 68999999999999999999999 4445544443
|
... |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.002 Score=66.28 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.+.-++|.||||+||||++..+|..+ +..+..+++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 35678999999999999999998866 455555554
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00055 Score=65.81 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=49.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh--C------CeEEEEec-cccchhcccCc-------------HHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC--K------TTFFNISA-SSVVSKWRGDS-------------EKLIKVLFELA 306 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l--~------~~~i~v~~-s~l~~~~~G~~-------------~~~l~~~f~~a 306 (498)
..+.+.|+.|||||||||+.|-+|+-+ + ..+.-++- +++.+...|.. .-.-..++...
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 345689999999999999999999976 2 23333433 34433322221 11233466677
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
+.+.|.|+++|||...
T Consensus 215 rsm~PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMSPEVIIVDEIGTE 230 (308)
T ss_pred HhcCCcEEEEeccccH
Confidence 8899999999999654
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0062 Score=64.90 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++..++++|++|+||||++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 356789999999999999999999877 5566656553
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=64.19 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=31.7
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.++..-+.|+||||||||+++..++... +...++++..+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 346667788999999999999999998543 25677777644
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=62.26 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=51.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh--------------------------c----
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------------------W---- 291 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~--------------------------~---- 291 (498)
++.+++..+|+.||||||||+++..++.+. |.+.++++..+-... .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 456777889999999999999999876533 778887765322100 0
Q ss_pred ---ccCcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 292 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 292 ---~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
..........+.+......+.+++||.+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123344455555666677799999999988
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=60.80 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.+-++|.||+|+||||+.+.|+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 367899999999999999999853
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00075 Score=67.44 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----------eEEEEe-ccccchhcc-------cC------cHHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT----------TFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR 307 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~----------~~i~v~-~s~l~~~~~-------G~------~~~~l~~~f~~a~ 307 (498)
.+++|.||+|+||||+.+.++..+.. ++..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999998732 222221 122221111 10 1112334666677
Q ss_pred hcCCeEEEEcCc
Q 010888 308 HHAPSTIFLDEI 319 (498)
Q Consensus 308 ~~~p~VL~IDEi 319 (498)
...|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 788999999996
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=62.88 Aligned_cols=46 Identities=26% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+..|.+.......+...+.. ..-+++.||+|||||++|.+++.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344555555555555554421 247899999999999999999985
|
|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00025 Score=65.36 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+++|.|+||||||++++.+|+.++.+++..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999997654
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0028 Score=60.24 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
+..++.||||||||++++.+...+ +..++.+.++
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 568889999999999999998766 5666666553
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00028 Score=65.86 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887654
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00077 Score=64.20 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=41.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC----eEEEEec-cccch---------hcccCcHHHHHHHHHHHHhcCCeEEEEcC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKT----TFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 318 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~----~~i~v~~-s~l~~---------~~~G~~~~~l~~~f~~a~~~~p~VL~IDE 318 (498)
-++|.||+|+||||++++++..+.. .++.+.. .++.. ...|.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887732 2222211 11110 01121122234455566667899999999
Q ss_pred c
Q 010888 319 I 319 (498)
Q Consensus 319 i 319 (498)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=60.87 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.-++|.|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 5688999999999999999999997667667665544
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.003 Score=58.56 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.++|.|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=56.03 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998888776
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0029 Score=65.32 Aligned_cols=79 Identities=25% Similarity=0.320 Sum_probs=53.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
++.+..+-++|+||||||||+|+..++.+. |...++++..+-... -....+..+..+-...
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 356677789999999999999999887644 677777776442110 0112233333333344
Q ss_pred HhcCCeEEEEcCccchhh
Q 010888 307 RHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~ 324 (498)
+...+.+|+||-+-.+.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 556789999999998876
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00029 Score=63.26 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++|++|-||||||+++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 58999999999999999999999999888764
|
|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0055 Score=59.73 Aligned_cols=133 Identities=10% Similarity=0.070 Sum_probs=90.3
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHHHhCC---------eEEEEeccccchhc-ccCcHHHHHHHHHHHH----hcCCeEEE
Q 010888 251 WKGILLFGPPG-TGKTMLAKAVATECKT---------TFFNISASSVVSKW-RGDSEKLIKVLFELAR----HHAPSTIF 315 (498)
Q Consensus 251 ~~~vLL~GppG-tGKT~lAraia~~l~~---------~~i~v~~s~l~~~~-~G~~~~~l~~~f~~a~----~~~p~VL~ 315 (498)
.+..||.|..+ +||..++..+++.+-. .++.+....-..+. ..-.-..++.+.+.+. ....-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 36799999998 9999999988887622 23333321100000 0112334555544443 23457999
Q ss_pred EcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHH
Q 010888 316 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL 395 (498)
|+++|.|. ....+.||+.++. +...+++|..|..+..+.+.++||+ ..+.++.|+...-.++.
T Consensus 95 I~~ae~mt-------------~~AANALLKtLEE---PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMN-------------LNAANSCLKILED---APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELY 157 (263)
T ss_pred EechHHhC-------------HHHHHHHHHhhcC---CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHH
Confidence 99999984 3466788888873 4455777778888899999999999 56899999887777777
Q ss_pred HHhcC
Q 010888 396 ESLLP 400 (498)
Q Consensus 396 ~~~l~ 400 (498)
...+.
T Consensus 158 ~~~~~ 162 (263)
T PRK06581 158 SQFIQ 162 (263)
T ss_pred HHhcc
Confidence 76653
|
|
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00037 Score=62.83 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+++|+|+||+|||++++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887554
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00038 Score=64.91 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+++|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.002 Score=59.28 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.++-.++|+||+|||||++.|.+|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4666789999999999999999999855
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=62.05 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=42.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---cc-CcHHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELAR 307 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~G-~~~~~l~~~f~~a~ 307 (498)
|+-++|.||+|+||||.+-.+|.++ +..+.-+++..... . + .. .........++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4678999999999999999998877 44444444322210 0 0 01 12233445555555
Q ss_pred hcCCeEEEEcCccch
Q 010888 308 HHAPSTIFLDEIDAI 322 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l 322 (498)
.....+|+||=....
T Consensus 81 ~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS 95 (196)
T ss_dssp HTTSSEEEEEE-SSS
T ss_pred hcCCCEEEEecCCcc
Confidence 555678999976543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0064 Score=60.04 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=29.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.+++..+|++||||||||+++..++.+. |.+.++++.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 346677889999999999999998876542 566666654
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.003 Score=58.71 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-c----------------ccCcHHHHHHHHHHHHhcCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-W----------------RGDSEKLIKVLFELARHHAPSTIFL 316 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-~----------------~G~~~~~l~~~f~~a~~~~p~VL~I 316 (498)
+|+.|++|+|||++|..++...+.+.+++..+.-.+. + ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887777777765432211 0 011222233333221 14679999
Q ss_pred cCccchhhhcc
Q 010888 317 DEIDAIISQRG 327 (498)
Q Consensus 317 DEiD~l~~~r~ 327 (498)
|-+..+....-
T Consensus 80 Dclt~~~~n~l 90 (169)
T cd00544 80 DCLTLWVTNLL 90 (169)
T ss_pred EcHhHHHHHhC
Confidence 99988876543
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=65.14 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=57.3
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe-ccccchh
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVSK 290 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~-~s~l~~~ 290 (498)
.+++++.-..+..+.+++.+.. +...++|.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 3456665555566666555422 234689999999999999999987763 3344442 1122110
Q ss_pred ------cccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 291 ------WRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 291 ------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
...............+....|++|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0111112245556667778899999999943
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0026 Score=59.11 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.+|+.|+||+|||++|..++.+++.+.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777776543
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0056 Score=59.01 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00049 Score=64.61 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
++++.||||+||||+++.+|+.+|.+.+ +..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 5899999999999999999999987654 4445543
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0035 Score=67.34 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=54.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC--------cHHHHHHHHHHHHhc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 309 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~--------~~~~l~~~f~~a~~~ 309 (498)
+..+..-++|.|+||+|||+++..++... +.+.++++..+...... |. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 46667789999999999999999998765 45777887654332110 11 011234455566667
Q ss_pred CCeEEEEcCccchhh
Q 010888 310 APSTIFLDEIDAIIS 324 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~ 324 (498)
.|.+|+||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=66.23 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=58.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEec-cccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVV 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~-s~l~ 288 (498)
...+++++.-.....+.+.+.+.... ....++++.||+|+|||++++++...+. ..++.+-- .++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 34566777665555566666554321 2347899999999999999999999872 34444421 1221
Q ss_pred hh------cc-cCcHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 289 SK------WR-GDSEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 289 ~~------~~-G~~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
-. .. .........++..+....|++|+++|+-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 10 00 0122234556777777889999999994
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00049 Score=64.15 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
+++.||||+||||+++.+|+.++. ..++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence 689999999999999999999986 4555555543
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0071 Score=63.23 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc----h---hc--
Q 010888 224 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----S---KW-- 291 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~----~---~~-- 291 (498)
..+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++.... . .+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae 293 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK 293 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhh
Confidence 455666665554433222111 2234679999999999999999999877 4445445442221 0 00
Q ss_pred -------ccCcHHHHHHHHHHHHh-cCCeEEEEcCccch
Q 010888 292 -------RGDSEKLIKVLFELARH-HAPSTIFLDEIDAI 322 (498)
Q Consensus 292 -------~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l 322 (498)
.......+...+..+.. ....+|+||-....
T Consensus 294 ~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 294 TIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 11233334444444432 23578888877554
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0061 Score=64.87 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 286 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~ 286 (498)
...++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4678999999999999999887754 34566666544
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0092 Score=59.78 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.+++.+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445778889999999999999998877 5556555543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00054 Score=63.61 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+.++|.|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46999999999999999999999999888765
|
|
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0029 Score=59.94 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-++++|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999983
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.019 Score=66.78 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-----------c----cc---------------CcHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-----------W----RG---------------DSEKLIKV 301 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-----------~----~G---------------~~~~~l~~ 301 (498)
+-++++||+|.|||+++..++...+ ++..++...-... . .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 5689999999999999999988776 6655544211000 0 00 00112223
Q ss_pred HHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH-HHHhcccc
Q 010888 302 LFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEK 379 (498)
Q Consensus 302 ~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~-al~~Rf~~ 379 (498)
++..... ..|.+|+|||++.+... .....+..++..+ .....+|| ++.....+.- .+.- -+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~---------~~~~~l~~l~~~~-----~~~~~lv~-~sR~~~~~~~~~l~~-~~~ 175 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNP---------EIHEAMRFFLRHQ-----PENLTLVV-LSRNLPPLGIANLRV-RDQ 175 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCCh---------HHHHHHHHHHHhC-----CCCeEEEE-EeCCCCCCchHhHHh-cCc
Confidence 3333332 56899999999987311 1122333333222 22223344 5544222321 2111 112
Q ss_pred eeEec----CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 010888 380 RILVP----LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421 (498)
Q Consensus 380 ~i~~~----~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s 421 (498)
.+.+. ..+.++-.+++...+... .....+..+.+.|.|..
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWA 219 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChH
Confidence 23344 458888888887665432 12234556667777654
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0066 Score=60.34 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++.++...++++||||||||+++..++.+. |.+.++++..
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 346777889999999999999999886643 5566666643
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00064 Score=63.74 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999877654
|
|
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00055 Score=63.68 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
+-++|.|+||+||||+|+.++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 56899999999999999999999988877665443
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >KOG2383 consensus Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0038 Score=64.47 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+|++++|||.-|||||+|.-.....+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998887654
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0082 Score=57.15 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~ 273 (498)
+...++|+||.|+|||++.+.|+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 345799999999999999999993
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00068 Score=60.41 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+.|.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999988775
|
|
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.054 Score=57.01 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC
Q 010888 367 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 367 ~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
..|..++-+|.-+.+.+...+.+.-+..+...+...
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 347777777655888999999888888888777554
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00073 Score=60.91 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
++|.|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0055 Score=61.67 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CeEEEEeccc
Q 010888 224 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 286 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~-~~~i~v~~s~ 286 (498)
+.+.+.+.+.+...+............+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3445555555544332111111123345678999999999999999998866 3 5666666543
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0023 Score=66.76 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC-----eEEEEeccc----------------cchhcccCcHHHHH---HHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNISASS----------------VVSKWRGDSEKLIK---VLFEL 305 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~-----~~i~v~~s~----------------l~~~~~G~~~~~l~---~~f~~ 305 (498)
.+...+|.||||+|||+|++.|++.... ..+.+...+ +.+.+.......++ .+++.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999997732 222222211 11222222233222 23333
Q ss_pred HH----hcCCeEEEEcCccchhhhc
Q 010888 306 AR----HHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 306 a~----~~~p~VL~IDEiD~l~~~r 326 (498)
|+ .....+|||||+..+....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHHHH
Confidence 32 2356799999999987643
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0092 Score=56.10 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=38.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH-----HhCCeE--------------EEEeccccchhcccCcHHHHHHHHHHHH-hcCCeE
Q 010888 254 ILLFGPPGTGKTMLAKAVAT-----ECKTTF--------------FNISASSVVSKWRGDSEKLIKVLFELAR-HHAPST 313 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~-----~l~~~~--------------i~v~~s~l~~~~~G~~~~~l~~~f~~a~-~~~p~V 313 (498)
++|+||.|+|||++.+.++- +.|.+. ..+...+......+.....++.+..... ...|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 224322 1122222222222233333333322222 236899
Q ss_pred EEEcCccc
Q 010888 314 IFLDEIDA 321 (498)
Q Consensus 314 L~IDEiD~ 321 (498)
+++||...
T Consensus 82 lllDEp~~ 89 (185)
T smart00534 82 VLLDELGR 89 (185)
T ss_pred EEEecCCC
Confidence 99999954
|
|
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0009 Score=62.97 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..++.+++|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 356688999999999999999999999999998655
|
|
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00071 Score=61.66 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+-+.|||||||||+++.+|+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999875
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00085 Score=62.96 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
..+++.||||+||||+++.+|+.+|.+.+. +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 469999999999999999999999876654 44443
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00077 Score=63.25 Aligned_cols=29 Identities=38% Similarity=0.659 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
|+|.||||+|||++++.+++.++.+.+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999998766543
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0089 Score=63.05 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=58.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh-------c---cc---CcHHHHHHHHHHHHhcCCeE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK-------W---RG---DSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~-------~---~G---~~~~~l~~~f~~a~~~~p~V 313 (498)
+..+++.||+|+||||++..+|... |..+..+++...... + .| ........+...+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3568899999999999999999754 444555554332110 0 00 11112233344444445678
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--cCCCcEEEEEEeCCCCCCCHH
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAATNLPWELDAA 372 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~viVIaaTn~p~~Ld~a 372 (498)
|+||=......+ ......+...++... .....++|+.+|.....+...
T Consensus 303 VLIDTaGr~~rd-----------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 303 ILIDTAGYSHRN-----------LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred EEEeCCCCCccC-----------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 999865433211 122333333333221 123456777777665555433
|
|
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=68.11 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=84.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE---------Eeccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---------ISASS 286 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~---------v~~s~ 286 (498)
-+|.|.+.+|+.+.-.+.--.. +....+ ++..-++|+.|.|.+-||.|.|.+.+.....+-. +.++-
T Consensus 301 PSI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred cccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 3789999999999866533221 111211 4455689999999999999999998855322111 11111
Q ss_pred cchhcccCcHHHHHH-HHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHh------hCC-ccCCCcEE
Q 010888 287 VVSKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM------DGL-TQSDELVF 358 (498)
Q Consensus 287 l~~~~~G~~~~~l~~-~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~l------d~~-~~~~~~vi 358 (498)
...+ ...++.+.. .+-. ...+|++|||+|+|..- .+....+.+++= .|+ ..-+.+.-
T Consensus 379 TtD~--eTGERRLEAGAMVL---ADRGVVCIDEFDKMsDi----------DRvAIHEVMEQqtVTIaKAGIHasLNARCS 443 (818)
T KOG0479|consen 379 TTDQ--ETGERRLEAGAMVL---ADRGVVCIDEFDKMSDI----------DRVAIHEVMEQQTVTIAKAGIHASLNARCS 443 (818)
T ss_pred eecc--ccchhhhhcCceEE---ccCceEEehhcccccch----------hHHHHHHHHhcceEEeEeccchhhhcccee
Confidence 1111 122332211 1111 22479999999998421 133333332221 122 12344577
Q ss_pred EEEEeCCCCC-------------CCHHHHhcccceeE
Q 010888 359 VLAATNLPWE-------------LDAAMLRRLEKRIL 382 (498)
Q Consensus 359 VIaaTn~p~~-------------Ld~al~~Rf~~~i~ 382 (498)
|+|++|+.+. |+..+++||+..+.
T Consensus 444 VlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv 480 (818)
T KOG0479|consen 444 VLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFV 480 (818)
T ss_pred eeeecCccccccCCCCChhhccCCcHHHHhhhcEEEE
Confidence 8999987642 78899999986543
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.006 Score=66.11 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=57.7
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------c----------------------
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G---------------------- 293 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G---------------------- 293 (498)
.++..+...+|+.||||+|||+++-.++.+. |.+.++++..+-..... |
T Consensus 257 gGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 257 GGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred cCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccC
Confidence 3456777889999999999999999998865 66777776644321100 0
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 294 DSEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 294 ~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
..+..+..+.+......|.+|+||-+..+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 1145566677777778899999999988754
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0077 Score=62.60 Aligned_cols=101 Identities=23% Similarity=0.321 Sum_probs=69.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEeccccchhcc------c--------CcHHHHHHHHHHHHhcC
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR------G--------DSEKLIKVLFELARHHA 310 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l--~~~~i~v~~s~l~~~~~------G--------~~~~~l~~~f~~a~~~~ 310 (498)
..-+..-+||-|.||.|||||.-.++..+ ..+.++|++.+-..... | ..+..+..+...+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 35566779999999999999999988877 34899999876543322 1 23445677888888899
Q ss_pred CeEEEEcCccchhhhcc-ccchhhHHHHHHHHHHHHHh
Q 010888 311 PSTIFLDEIDAIISQRG-EARSEHEASRRLKTELLIQM 347 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~-~~~~~~~~~~~i~~~Ll~~l 347 (498)
|.+++||-|..+....- .....-...+.....|...-
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999876542 22222222344445554443
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.011 Score=57.99 Aligned_cols=133 Identities=12% Similarity=0.203 Sum_probs=73.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeccccchhc--------cc------CcHHHH-------HHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKW--------RG------DSEKLI-------KVLF 303 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l~~~~--------~G------~~~~~l-------~~~f 303 (498)
...+-.+++.|++|||||+++..+...+... ++.+.. .....+ .. +.+..+ ....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 3444579999999999999999998877432 222221 111111 00 001111 1111
Q ss_pred HHHHh---cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccce
Q 010888 304 ELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 380 (498)
Q Consensus 304 ~~a~~---~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~ 380 (498)
..... ..+.+|++||+..-. . .......++. ..+.-++.+|..+.....+++.++.-.+..
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~~~-------~----k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~ 152 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGDKK-------L----KSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYF 152 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCCch-------h----hhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEE
Confidence 11111 236799999984310 0 0122233332 223334777888888889999998877666
Q ss_pred eEecCCCHHHHHHHHHHh
Q 010888 381 ILVPLPDTEARRAMFESL 398 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~ 398 (498)
+.++ .+..+..-+++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 6565 4566666666654
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0015 Score=68.63 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=41.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
....++++.||+|||||+++.+++... | -.++.+.+..... ...+.. -..+.+|+|||+..+..
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-------~~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-------TRQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-------HHHHhh--hccCCEEEEEcCCCCcC
Confidence 345799999999999999999988762 4 2233333332211 111111 23457999999988754
Q ss_pred h
Q 010888 325 Q 325 (498)
Q Consensus 325 ~ 325 (498)
.
T Consensus 275 ~ 275 (449)
T TIGR02688 275 A 275 (449)
T ss_pred C
Confidence 3
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0052 Score=62.89 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.+.+.-++|+||||+|||+++..++... +...++++..+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 345666778999999999999999998763 34677777654
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00098 Score=64.15 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..++|.||||+||||+++.+|+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999999876644
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0026 Score=62.80 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
..+..++|.||+|+|||++++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 44567999999999999999999998743
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0069 Score=59.32 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=32.0
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+...++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 356777889999999999999999887755 7777777654
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=56.37 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.++...++|.||||+|||+++..++.+. +.+.++++.
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 346777889999999999999999876533 556666654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0098 Score=59.09 Aligned_cols=38 Identities=26% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..+...++|.|+||+|||+++..++... +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 35666789999999999999999887764 667766665
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0084 Score=57.95 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
++.++...+++.|+||+|||+++..++.+. +.+.++++..+
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 346667889999999999999999887643 67777776643
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0008 Score=61.60 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
++|.||+|+||||+++.+++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986664
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00098 Score=62.48 Aligned_cols=33 Identities=36% Similarity=0.716 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.++|.||||+||||+|+.|++.+ ++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHH
Confidence 58999999999999999999994 4455554443
|
|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0068 Score=61.73 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
+.+...-++|+||||+|||+++..++... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 45666778999999999999999998763 33778887655
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0021 Score=66.53 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=44.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEe-ccccc---------hhcccCcHHHHHHHHHHHHhcCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNIS-ASSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 316 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~-~s~l~---------~~~~G~~~~~l~~~f~~a~~~~p~VL~I 316 (498)
...+++.||+|+||||+.+++...+. ..++.+. ..++. ....|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 35789999999999999999998764 2333331 11111 0111221122445566666788999999
Q ss_pred cCcc
Q 010888 317 DEID 320 (498)
Q Consensus 317 DEiD 320 (498)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0017 Score=52.07 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh------CCeEEEEec
Q 010888 252 KGILLFGPPGTGKT-MLAKAVATEC------KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT-~lAraia~~l------~~~~i~v~~ 284 (498)
.-+++.|||||||| ++++.++... +..++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 34666999999999 6666666655 445555544
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0015 Score=66.34 Aligned_cols=70 Identities=26% Similarity=0.352 Sum_probs=46.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEec-cccc-------hhcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-SSVV-------SKWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~-s~l~-------~~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
..++++.||+|+||||+++++...+ +..++.+-- .++. .-..+........++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4689999999999999999999886 233333321 1111 00011111145667777888899999999
Q ss_pred Ccc
Q 010888 318 EID 320 (498)
Q Consensus 318 EiD 320 (498)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 993
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0024 Score=64.92 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHH
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVL 302 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~ 302 (498)
..+.++.+.+++...+... .....-++++|+.|+|||++.+.+..-+|.....+..+.......+ . -
T Consensus 54 d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~-~------~ 120 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE-H------R 120 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC-C------C
Confidence 4456777777765544321 2334678999999999999999999888765433333222222111 0 1
Q ss_pred HHHHHhcCCeEEEEcCccc
Q 010888 303 FELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 303 f~~a~~~~p~VL~IDEiD~ 321 (498)
|..+.-....+++.||++.
T Consensus 121 f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 121 FGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred chhhhhcCCEEEEecCCCC
Confidence 3333444456888999863
|
This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0012 Score=61.65 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++.-|+|.|++|+|||++++.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34467889999999999999999999988776543
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0029 Score=69.24 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+||.||+|||||++.|+||.-.
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5777899999999999999999999865
|
|
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0062 Score=58.62 Aligned_cols=67 Identities=25% Similarity=0.283 Sum_probs=38.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc---chhc-----c-cCcHHHHHHHHHHH--HhcCCeEEEEcCc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV---VSKW-----R-GDSEKLIKVLFELA--RHHAPSTIFLDEI 319 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l---~~~~-----~-G~~~~~l~~~f~~a--~~~~p~VL~IDEi 319 (498)
+..++|||+||+|||++|..+ +.++ .++...- ...+ . =.+-..+...+..+ ......+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 357999999999999999888 3333 2332111 0000 0 01222333334332 2345679999988
Q ss_pred cch
Q 010888 320 DAI 322 (498)
Q Consensus 320 D~l 322 (498)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 876
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0014 Score=61.72 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=45.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEec-cccchh-------------cccCcHHHHHHHHHHHHhcCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK-------------WRGDSEKLIKVLFELARHHAPS 312 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~-s~l~~~-------------~~G~~~~~l~~~f~~a~~~~p~ 312 (498)
.....++|.||+|+||||++++++.... ...+.+.. .++... ..+.........+..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3457899999999999999999998762 22222211 111100 0011122345566667778899
Q ss_pred EEEEcCc
Q 010888 313 TIFLDEI 319 (498)
Q Consensus 313 VL~IDEi 319 (498)
+++++|+
T Consensus 103 ~i~igEi 109 (186)
T cd01130 103 RIIVGEV 109 (186)
T ss_pred EEEEEcc
Confidence 9999999
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0044 Score=56.98 Aligned_cols=74 Identities=22% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccc--------hhccc----Cc-HHHHHHHHHHHHhcCCe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV--------SKWRG----DS-EKLIKVLFELARHHAPS 312 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~--------~~~~G----~~-~~~l~~~f~~a~~~~p~ 312 (498)
..++..+.|.||+|+|||+|.+.++.... .--+.++..++. ....+ -+ ....+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 56667899999999999999999998652 111233322211 00011 01 12233345566667899
Q ss_pred EEEEcCccc
Q 010888 313 TIFLDEIDA 321 (498)
Q Consensus 313 VL~IDEiD~ 321 (498)
+|++||--.
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999843
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.017 Score=59.16 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45678899999999999999999877 445554544
|
|
| >PRK03731 aroL shikimate kinase II; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0013 Score=60.70 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..++|.|++|+|||++++.+|++++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999987553
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=55.82 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVA 272 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia 272 (498)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.001 Score=61.67 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998665
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0053 Score=57.46 Aligned_cols=73 Identities=23% Similarity=0.182 Sum_probs=43.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEecccc--chhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSV--VSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l--~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
.+...+.|.||+|+|||||++.++.... .--+.++...+ ......-+ ....+-.+..+-...|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4556789999999999999999998652 11122222111 00100011 11223344555567899999999843
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13946 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=62.24 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
++.|++.|.+|+|||++++.+|+.+|.+++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 367999999999999999999999999988665
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0097 Score=60.83 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.....-+.|+||||+|||+++..++-.. +...++++..+
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 346666778999999999999999877422 45677787654
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.038 Score=56.20 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++..+.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456789999999999999999999888433
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0016 Score=60.55 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
...++|.|++|+|||++++.+++.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999998876654
|
|
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0013 Score=61.87 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+.+++.||||+|||++++.+++.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4689999999999999999999998776543
|
|
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0015 Score=63.69 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..++|.||||+||||+|+.+|+.++.+++.+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999997666543
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0097 Score=57.98 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45666789999999999999999887654 778777764
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0026 Score=66.36 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec-cccc-----------hhcccCcHHHHHHHHHHHHhcCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA-SSVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 314 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~-s~l~-----------~~~~G~~~~~l~~~f~~a~~~~p~VL 314 (498)
..+|+.||+|+||||+++++.+.+. ..++.+-- .++. ...+|............+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988762 33444421 1211 01112111234455666677899999
Q ss_pred EEcCcc
Q 010888 315 FLDEID 320 (498)
Q Consensus 315 ~IDEiD 320 (498)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999994
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=56.04 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
++|.|+||+|||++++.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 666676765433
|
The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0039 Score=64.20 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEe-ccccch------------h-cccCcHHHHHHHHHHHHhcCCeE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS------------K-WRGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~-~s~l~~------------~-~~G~~~~~l~~~f~~a~~~~p~V 313 (498)
...++++.|++|+||||+++++..... ..++.+- ..++.- . ..|...-....+++.+....|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 347899999999999999999999873 2333331 111110 0 01112223466778888899999
Q ss_pred EEEcCcc
Q 010888 314 IFLDEID 320 (498)
Q Consensus 314 L~IDEiD 320 (498)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999994
|
|
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.16 Score=50.79 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=56.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
+++=-+++.+-+.++... +..|..+.||.|.+|+||+++++..|.-.+..++.+..+.-. ...+....
T Consensus 9 ~lVlf~~ai~hi~ri~Rv----------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV----------LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHH----------HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH----------HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHH
Confidence 455566676666665422 235667899999999999999999999999999988754321 11223445
Q ss_pred HHHHHHHHH-hcCCeEEEEcCcc
Q 010888 299 IKVLFELAR-HHAPSTIFLDEID 320 (498)
Q Consensus 299 l~~~f~~a~-~~~p~VL~IDEiD 320 (498)
++.++..+- ...|.+++|+|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 666665554 4567888887653
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=61.10 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=30.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.....-+.|+||||||||+++..++-.. +...++++...
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 345666778899999999999999887422 24677777643
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0012 Score=57.11 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l 275 (498)
|+|.|+|||||||+|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
|
... |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.023 Score=52.51 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
-+++.||||+|||++++.++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 36889999999999999998876 5666666654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=53.23 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~ 281 (498)
-+.+|+++|.|||++|-.+|-+. |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46788999999999999998766 544443
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=53.65 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHhC----CeEEEEec
Q 010888 252 KGILLFGPPGTGKTM-LAKAVATECK----TTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~-lAraia~~l~----~~~i~v~~ 284 (498)
+++++.||+|||||+ ++..+..... ..++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 579999999999999 5555555443 33555544
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0044 Score=60.02 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+.-|.|.|++|+||||+|+.|+..+ |.+++.++..++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34568899999999999999999998 6777777765553
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0068 Score=68.78 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=41.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---C--CeEEEEecccc----chhcccCcHHHHHHHHHHHH----------hcCCe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSV----VSKWRGDSEKLIKVLFELAR----------HHAPS 312 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~--~~~i~v~~s~l----~~~~~G~~~~~l~~~f~~a~----------~~~p~ 312 (498)
+-++|.|+||||||++++++...+ + .+++-+.++.- .....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999997755 3 34443333211 11122322333444432110 12357
Q ss_pred EEEEcCccch
Q 010888 313 TIFLDEIDAI 322 (498)
Q Consensus 313 VL~IDEiD~l 322 (498)
+|+|||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999665
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0017 Score=60.55 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-+++.||||+||||+++.+++.+|... ++..++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~ 37 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDL 37 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHH
Confidence 3588999999999999999999988654 444443
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0021 Score=62.97 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
.+..+++.|+||+||||+++.+++.+|.+ .++++++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34568999999999999999999999865 566666653
|
|
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0016 Score=60.94 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+++.||||+|||++++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766544
|
|
| >PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0028 Score=64.70 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=32.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
...+...++|.|+||||||++++.++..+|.+++.++
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 3567789999999999999999999999999999443
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0081 Score=56.18 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++.-+.|.||+|+|||||.+.+...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 456677999999999999999999743
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0042 Score=61.11 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...++|.||||+||+|+++.+|+.++.+. ++..++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 46799999999999999999999998644 4555554
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0042 Score=66.20 Aligned_cols=92 Identities=23% Similarity=0.150 Sum_probs=56.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch----
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---- 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~---- 289 (498)
..+++++.......+.+.+.+. .|..-+|++||+|+|||+...++.++++.+...+..-+-.-
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~-------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~ 300 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN-------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL 300 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh-------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec
Confidence 3446666666666666666553 23334778999999999999999999865444222111100
Q ss_pred ---------hcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 290 ---------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 290 ---------~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
.-.|- .....++......|+||++.||-.
T Consensus 301 ~gI~Q~qVN~k~gl---tfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 301 PGINQVQVNPKIGL---TFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred CCcceeecccccCC---CHHHHHHHHhccCCCeEEEeccCC
Confidence 01111 112334445567899999999954
|
|
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0017 Score=62.31 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++|.||||+||||+|+.+++.++.+.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766543
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.02 Score=54.65 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=72.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc---------------------------------hh
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV---------------------------------SK 290 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~---------------------------------~~ 290 (498)
+.+-+.=++|.|+.|||||.+.+.++.=. +....+++...-. ..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 35555668899999999999999987733 4444444321000 00
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
......+.+..+.+..+.....|++||-+..++... +......++..+..+...+. + |.-|-.|..++
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---------~~~~vl~fm~~~r~l~d~gK-v--IilTvhp~~l~ 171 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---------SEDAVLNFMTFLRKLSDLGK-V--IILTVHPSALD 171 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---------cHHHHHHHHHHHHHHHhCCC-E--EEEEeChhhcC
Confidence 112234455666666677777999999998886542 12234445555555554444 3 33455667788
Q ss_pred HHHHhcc
Q 010888 371 AAMLRRL 377 (498)
Q Consensus 371 ~al~~Rf 377 (498)
+++.-|+
T Consensus 172 e~~~~ri 178 (235)
T COG2874 172 EDVLTRI 178 (235)
T ss_pred HHHHHHH
Confidence 8777654
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.004 Score=68.68 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=41.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe-cccc-----chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~-~s~l-----~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
..++|+.||||+||||++++++..+. ..+..+- ..++ ...+.. ...........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998873 3232221 1111 111110 000112222333456799999999943
|
|
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0023 Score=60.56 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCeEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC--KTTFF 280 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l--~~~~i 280 (498)
+..++++|+|||||||+++.+++.+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3568999999999999999999999 55543
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0041 Score=61.23 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
|+|.|+||+||||+|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 456676665444
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0019 Score=62.09 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.|+++||||+|||++++.+|+.++.+.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766543
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0015 Score=60.21 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++++|.|||||||+++.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8998887665
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0088 Score=66.08 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+|+..+-|.||+|+||||+|..+-+-.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5677789999999999999999998755
|
|
| >COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0024 Score=64.56 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=33.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
+.-++|.||+++|||-+|-.+|++++.+++.++...+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence 35689999999999999999999999999999876554
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.071 Score=56.63 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc----------h-----hcc----c-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----------S-----KWR----G-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~----------~-----~~~----G-~~~~~l~~~f~~a 306 (498)
++.-++|.|++|+||||++..+|..+ |..+..+++.... + .+. + .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999877 5666666653221 0 000 0 1112233345555
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
+.....+|+||=...+
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556689999987654
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0077 Score=60.24 Aligned_cols=68 Identities=28% Similarity=0.306 Sum_probs=37.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch---hc-ccCcHHHHHHHH----HHHHhcCCeEEEEcCccch
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---KW-RGDSEKLIKVLF----ELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~---~~-~G~~~~~l~~~f----~~a~~~~p~VL~IDEiD~l 322 (498)
|+|+|-||+|||++|+.|+..+ +..+..++-..+.- .| ....++..+..+ ..+... ..|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999999976 56677776544331 12 123445444433 333333 379999998766
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=53.71 Aligned_cols=74 Identities=27% Similarity=0.324 Sum_probs=44.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeccccch-------hccc----CcH-HHHHHHHHHHHhcCCeE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVS-------KWRG----DSE-KLIKVLFELARHHAPST 313 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s~l~~-------~~~G----~~~-~~l~~~f~~a~~~~p~V 313 (498)
..+...+.|.||+|+|||+++++++..... --+.++...+.. ...+ -+. ...+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 456678999999999999999999987632 112333322110 0000 111 12223345555567899
Q ss_pred EEEcCccc
Q 010888 314 IFLDEIDA 321 (498)
Q Consensus 314 L~IDEiD~ 321 (498)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999854
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0087 Score=61.02 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=46.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEe-ccccchh------------cccCcHHHHHHHHHHHHhcCCe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK------------WRGDSEKLIKVLFELARHHAPS 312 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~-~s~l~~~------------~~G~~~~~l~~~f~~a~~~~p~ 312 (498)
.....++++.||+|+||||+++++...+. ...+.+. ..++.-. ..+...-....++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 34557999999999999999999998772 2222221 1111100 0011122345567777778899
Q ss_pred EEEEcCcc
Q 010888 313 TIFLDEID 320 (498)
Q Consensus 313 VL~IDEiD 320 (498)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999994
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.057 Score=49.62 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=72.8
Q ss_pred EcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHH
Q 010888 257 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 257 ~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
.+.+||||||++.++++-++- +-.+.-.++.++ ...+.++.+.+........++|.|==......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR---------- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER---------- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence 478999999999999998874 344444555443 345556666666654556788888554443221
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHH--------HhcccceeEecC--CCHHHHHHHHHHhcCCCC
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM--------LRRLEKRILVPL--PDTEARRAMFESLLPSQT 403 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al--------~~Rf~~~i~~~~--Pd~~eR~~IL~~~l~~~~ 403 (498)
+++.+.+-.....+.....++-+||-.-..+...+.+ ..|=+.+-.+.. .+...-..|++..++...
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2232222222222222233566666654433322222 334444444433 345666677777765443
|
Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0028 Score=60.52 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=17.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
-.+++||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999998777766655
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.022 Score=59.34 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.+++.+.+.+.+...+..+..+. ..++..++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45677777776665443332222 3456778999999999999999999866 5555555553
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0073 Score=65.40 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEec-cccch
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~-s~l~~ 289 (498)
..+++++.-..+..+.+++.+.. +..-++++||+|+||||+.+++.+++. ..++.+-- -++.-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 34566665566666666665422 223478999999999999998888773 33443321 11110
Q ss_pred hcc------cCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 290 KWR------GDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 290 ~~~------G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
... .............+....|.+|++.|+-.
T Consensus 285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 000 01111233455566678899999999943
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.016 Score=65.62 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=51.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~---l~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
++.++...++|+||||||||+|+..++.. .|...++++..+-... -....+..+..+-...
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 34667788999999999999999765543 3667777766442210 0011233333333334
Q ss_pred HhcCCeEEEEcCccchhh
Q 010888 307 RHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~ 324 (498)
+...+.+|+||-+..+.+
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 556789999999999986
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0038 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l 275 (498)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.026 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~ 273 (498)
..-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.002 Score=60.78 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+.-+++.||||+||||+|+.++++++.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34679999999999999999999999865543
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0089 Score=62.60 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++..++|.||||+|||++++.+++...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 45556799999999999999999999763
|
Members of this family differ in the specificity of RNA binding. |
| >PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein [] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0077 Score=57.23 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=32.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeccccchh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSK 290 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l~~~ 290 (498)
..|.-+++.|+||+|||+++..+...+ +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 445778999999999999999999998 788899998777544
|
It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0034 Score=65.13 Aligned_cols=23 Identities=52% Similarity=0.638 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999988
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.017 Score=59.68 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=30.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++..+..-+.|+||||+|||+++..++... +...++++...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 346666778899999999999999987533 34566776543
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.038 Score=59.93 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
......+.|.||+|+|||+++..++..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445788999999999999999998764
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.099 Score=55.76 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=47.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh----------------c---c-cCcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W---R-GDSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~----------------~---~-G~~~~~l~~~f~ 304 (498)
.++.-+++.|++|+||||++..+|..+ |..+..+++...... + . ............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 345778999999999999888888755 556666665422110 0 0 122333344555
Q ss_pred HHHhcCCeEEEEcCccch
Q 010888 305 LARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 305 ~a~~~~p~VL~IDEiD~l 322 (498)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666789999988655
|
|
| >COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0052 Score=71.98 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCCCceEEEEcCCCCcHHHH-HHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhc--------------CCe
Q 010888 248 LSPWKGILLFGPPGTGKTML-AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH--------------APS 312 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~l-Araia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~--------------~p~ 312 (498)
....++++++||||+|||++ .-++-+++-..++.+|.+.-. .++..+..+-+...-. .-.
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 46668999999999999996 456667777778877765331 1222222221111100 114
Q ss_pred EEEEcCccchhhhccccc-hhhHHHHHHHHH--HHHHhhCCccCCCcEEEEEEeCCCCCC-----CHHHHhcccceeEec
Q 010888 313 TIFLDEIDAIISQRGEAR-SEHEASRRLKTE--LLIQMDGLTQSDELVFVLAATNLPWEL-----DAAMLRRLEKRILVP 384 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~--Ll~~ld~~~~~~~~viVIaaTn~p~~L-----d~al~~Rf~~~i~~~ 384 (498)
|||.|||+ |+..+.... ..--..+.++.. +...+..-...-.++++.+++|++.+. ..++.++- ..+++.
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~ 1643 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCC 1643 (3164)
T ss_pred EEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEec
Confidence 99999998 443322111 111111222111 111111000112358889999998653 34444443 568889
Q ss_pred CCCHHHHHHHHHHhcCCC
Q 010888 385 LPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 385 ~Pd~~eR~~IL~~~l~~~ 402 (498)
.|.......|.+.++...
T Consensus 1644 ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1644 YPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 999999988888776543
|
|
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0069 Score=61.13 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l 287 (498)
.-+++.|+|||||||+|+.+++++ +.. .++..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~--~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAV--NVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCE--EEeccHH
Confidence 458889999999999999999998 544 4444443
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.028 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.+...++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999988
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=58.25 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccc---------hhcccC---------------
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV---------SKWRGD--------------- 294 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~---------~~~~G~--------------- 294 (498)
.....-.=|+||||+|||.++-.+|-.. +...++++...-. ..+.-.
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCC
Confidence 3443445599999999999999887654 3457888764321 111100
Q ss_pred cH---HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 295 SE---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 295 ~~---~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
.+ ..+..+........-.+|+||-+-.+.........+.......+..++..+..+....+ +.||.|
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~-iaVvvT 184 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYN-IAVVVT 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCC-ceEEee
Confidence 11 11122222223445689999999998764322111122223455556555655544333 445544
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0081 Score=54.08 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=43.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeccc---cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASS---VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s~---l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
..+...+.|.||+|+|||++++.++..... --+.++... +...+.+ ....+-.+..+-...|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 466678999999999999999999986621 112222110 0000111 12223334555667899999999854
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.006 Score=56.44 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4566789999999999999999999876
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02239 recomb_RAD51 DNA repair protein RAD51 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=59.64 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=30.8
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh------C---CeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC------K---TTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l------~---~~~i~v~~s~ 286 (498)
++.++..-+.++||||+|||+++..++... | ...++++..+
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 346667778999999999999999987632 1 3567777654
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). |
| >TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0036 Score=64.28 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+.|.|+||+|||+|++.+++.++.+++.-.+.+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 479999999999999999999999988865554433
|
E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.02 Score=62.19 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=32.0
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCeEEEEecc
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISAS 285 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~----l~~~~i~v~~s 285 (498)
.++.++.+.+|+.||||||||+++..++.+ .|.+.++++..
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 345677889999999999999999988543 25677777653
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.015 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++--|-|.||+|||||||.+.||.-.
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555678899999999999999999854
|
|
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0022 Score=58.06 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=26.5
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 256 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 256 L~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
|.||||+|||++++.||++++.. .++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHH
Confidence 67999999999999999999864 5565555443
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.017 Score=59.21 Aligned_cols=34 Identities=26% Similarity=0.562 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.|+|+||||+|||++++.|+..++.+.+ +..++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 4899999999999999999999987554 444444
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0031 Score=56.23 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++...++|.|+.|+|||++++.+++.++..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3455679999999999999999999999754
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0044 Score=63.49 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe-ccccchh------cccCcHHHHHHHHHHHHhcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~-~s~l~~~------~~G~~~~~l~~~f~~a~~~~p~VL~IDE 318 (498)
..++|+.|++|+||||+++++.... +..++.+- ..++... ......-....++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999876 23333332 1222110 0011112345667777788999999999
Q ss_pred c
Q 010888 319 I 319 (498)
Q Consensus 319 i 319 (498)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 9
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0079 Score=64.60 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=58.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe-ccccch
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVS 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~-~s~l~~ 289 (498)
..+++++.-.+...+.+++.+.. +..-+|+.||+|+||||+..++.++++ ..++.+- +-+..-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 34677776666666667665532 334689999999999999988877763 3333331 111110
Q ss_pred hc-----cc-CcHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 290 KW-----RG-DSEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 290 ~~-----~G-~~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
.. ++ .........++.+....|.+|++.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 00 01 111224455666677899999999994
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.019 Score=53.68 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh--C-----------CeEEEEeccccch----hcc---c--------------
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC--K-----------TTFFNISASSVVS----KWR---G-------------- 293 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l--~-----------~~~i~v~~s~l~~----~~~---G-------------- 293 (498)
..+..-++|.||||+|||+++..++..+ + .++++++...-.. .+. +
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 4455668999999999999999998865 2 3566665532210 000 0
Q ss_pred ---------------CcHHHHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 294 ---------------DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ---------------~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
.....+..+.+.+.. ..+.+|+||.+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012233445555566 57899999999999865
|
|
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.039 Score=65.00 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=50.4
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC--CCCHHHHhcccceeEecCCCHH
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~--~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
-||+|||+..|..... +.+...+..... ..+.-.|.+|.+|.+|. .+...++.-|...|-|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~---------kevE~lI~rLAq--kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG---------KKVEELIARLAQ--KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh---------HHHHHHHHHHHH--HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 3899999988764311 122222222221 12344588899999986 4777778889999999999988
Q ss_pred HHHHHHHH
Q 010888 390 ARRAMFES 397 (498)
Q Consensus 390 eR~~IL~~ 397 (498)
+-+.||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 88888754
|
|
| >PRK04182 cytidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.003 Score=58.34 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.|+|.|++|+|||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988765
|
|
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.017 Score=59.65 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
+..+..-+.++|+||+|||+++..++... +.+.++++..+
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 45666778899999999999999887432 23677777654
|
|
| >PRK01184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0031 Score=58.96 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
-++|+||||+||||+++ ++++.|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 57899999999999987 788888877654
|
|
| >TIGR02173 cyt_kin_arch cytidylate kinase, putative | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0032 Score=57.68 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
|.|.|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999886543
|
Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0033 Score=64.98 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEe-ccccchh--------c----ccCcHHHHHHHHHHHHhcCCeE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNIS-ASSVVSK--------W----RGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~-~s~l~~~--------~----~G~~~~~l~~~f~~a~~~~p~V 313 (498)
....++|+.||+|+||||+++++...+.. .++.+- ..++.-. + .+...-....++..+....|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44578999999999999999999998732 233221 1111100 0 0111223456777777889999
Q ss_pred EEEcCcc
Q 010888 314 IFLDEID 320 (498)
Q Consensus 314 L~IDEiD 320 (498)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999993
|
|
| >PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0058 Score=64.50 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+.|.|.|++|||||||++++++.+|.+.+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999877543
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0028 Score=58.02 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
|.|+|+||||||||++.+++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999999 87766
|
|
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0044 Score=56.75 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 289 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~ 289 (498)
..+.|+|.||+|||++|+++.+.+ +.+.+.++...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 468899999999999999999987 78888888876653
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.025 Score=61.67 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred hhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh---------------------------
Q 010888 242 KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------------------- 290 (498)
Q Consensus 242 ~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~--------------------------- 290 (498)
+...++.++...+||+|+||+|||+++..++.+. |.+.++++..+-...
T Consensus 22 ~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~ 101 (509)
T PRK09302 22 DITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDAS 101 (509)
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecC
Q ss_pred ---------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 291 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 291 ---------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
.....+..+..+.+......+..|+||-+..+....... ..+...+...+..+...+..++++.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~-------~~~r~~l~~L~~~Lk~~g~TvLlt~ 174 (509)
T PRK09302 102 PDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNE-------AVVRRELRRLFAWLKQKGVTAVITG 174 (509)
T ss_pred cccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCH-------HHHHHHHHHHHHHHHhCCCEEEEEE
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0053 Score=62.86 Aligned_cols=71 Identities=23% Similarity=0.433 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe-ccccch------hcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS------KWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~-~s~l~~------~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
...++++.|++|+|||+++++++.+. ...++.+. ..++.- .+.....-....++..+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34789999999999999999999874 22333221 112210 0101111235667778888999999999
Q ss_pred Ccc
Q 010888 318 EID 320 (498)
Q Consensus 318 EiD 320 (498)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 993
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0056 Score=61.23 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----eEEEE---------eccccc-hhcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT----TFFNI---------SASSVV-SKWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~----~~i~v---------~~s~l~-~~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
.=||++||+|+||||...++-.+.+. +.+.+ +...+. ..-+|.-.......++.|....|+||++-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvG 205 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVG 205 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34788999999999999999888853 23322 111111 22344444445556667777889999999
Q ss_pred Cccc
Q 010888 318 EIDA 321 (498)
Q Consensus 318 EiD~ 321 (498)
|+-.
T Consensus 206 EmRD 209 (353)
T COG2805 206 EMRD 209 (353)
T ss_pred cccc
Confidence 9844
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.029 Score=52.17 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4666789999999999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.032 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+..+|.||.|+|||++.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999986533
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >TIGR00174 miaA tRNA isopentenyltransferase (miaA) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0039 Score=62.74 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
++|.||+|+|||++|..++++++..++.++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999988887766444
|
Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. |
| >PLN02840 tRNA dimethylallyltransferase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0037 Score=65.90 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-++|.||+|+|||+++..++.+++.+++..+...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 458899999999999999999999988877765433
|
|
| >PRK14529 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=57.70 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.++|.||||+||||+++.+++.++.+.+ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 4889999999999999999999987664 334443
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.011 Score=56.73 Aligned_cols=24 Identities=50% Similarity=0.670 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-+.+.||+|||||++|-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999998766
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.019 Score=65.42 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=43.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc----hhcccCcHHHHHHHHHH-HH----hcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----SKWRGDSEKLIKVLFEL-AR----HHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~----~~~~G~~~~~l~~~f~~-a~----~~~p~VL~IDE 318 (498)
.+-++|.|+||||||++++++...+ |..++.+.++... ....|.....++.+... .. .....+|+|||
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE 447 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDE 447 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEEC
Confidence 3567899999999999999997654 6666655443221 11122222223332111 11 12457999999
Q ss_pred ccchh
Q 010888 319 IDAII 323 (498)
Q Consensus 319 iD~l~ 323 (498)
+-.+.
T Consensus 448 asMv~ 452 (744)
T TIGR02768 448 AGMVG 452 (744)
T ss_pred cccCC
Confidence 96663
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0046 Score=57.27 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK-TTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~-~~~i~v~~ 284 (498)
.-|.|.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4577899999999999999999985 44444443
|
|
| >COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.013 Score=54.47 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
..+..+.|+|.+|+||||+|.++.+.+ |...+.+++..+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 445678899999999999999999987 8899999887654
|
|
| >PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0033 Score=64.01 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-++|.||+|+|||++|..+|++++.+++..+.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 468899999999999999999999988877665433
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.16 Score=54.14 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh----------------c---ccC-cHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W---RGD-SEKLIKVLFEL 305 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~----------------~---~G~-~~~~l~~~f~~ 305 (498)
++..+++.|++|+||||++..+|..+ |..+..+++...... + .+. .........+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45778999999999999988888764 556766766422110 0 001 12333455555
Q ss_pred HHhcCCeEEEEcCccch
Q 010888 306 ARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~l 322 (498)
+....+.+|+||=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65666789999987654
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.19 Score=51.28 Aligned_cols=96 Identities=24% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCeEEEEcCccchhhhccccchh----hHHHHHHHHHHHHHhhCCccCCCcEEE--EEEeCC---CC--CCCHHHHhccc
Q 010888 310 APSTIFLDEIDAIISQRGEARSE----HEASRRLKTELLIQMDGLTQSDELVFV--LAATNL---PW--ELDAAMLRRLE 378 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~r~~~~~~----~~~~~~i~~~Ll~~ld~~~~~~~~viV--IaaTn~---p~--~Ld~al~~Rf~ 378 (498)
.|.++-||++..+.......... +...=.+...|+..+.+-..-....+| +++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 47788999999998764322111 111123445555554433322222333 555532 22 34545544321
Q ss_pred ---------------------ceeEecCCCHHHHHHHHHHhcCCCCCC
Q 010888 379 ---------------------KRILVPLPDTEARRAMFESLLPSQTGE 405 (498)
Q Consensus 379 ---------------------~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 405 (498)
..+.++..+.+|-+.+++.+....-+.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 157788889999999999887665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.02 Score=53.02 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||+|.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4556779999999999999999999865
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.007 Score=59.97 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=33.3
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
+..+....+|++|+||||||+++...+.+. |.+.++++..+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 346777889999999999999999987765 67788776543
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.022 Score=59.48 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+..+++.||.|||||++.+++.+.+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 447899999999999999999998873
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.036 Score=59.77 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+.-++|.||+|+||||++..+|..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34568899999999999999999866
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.11 Score=50.64 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 010888 254 ILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~ 274 (498)
-+|.||||+|||+++..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999874
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK14526 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0048 Score=59.46 Aligned_cols=33 Identities=30% Similarity=0.627 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.++|.||||+||||+++.++..++.+.+ +..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 4889999999999999999999886554 44444
|
|
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.025 Score=53.72 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s 285 (498)
.++|+.|++|+|||++++.+...+ ...++-++..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 489999999999999999987766 3456666653
|
The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.026 Score=52.65 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||++++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566789999999999999999999865
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=65.06 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=55.3
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---eEEEEecc-ccc--
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISAS-SVV-- 288 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~---~~i~v~~s-~l~-- 288 (498)
.+++++.-..+..+.+.+.+. .+...+|++||+|+||||+..++.+.++. .++.+--. +..
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~-------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~ 359 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH-------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP 359 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC
Confidence 345565555555555555442 22345889999999999999888887742 33322110 111
Q ss_pred ---hhcc-cCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 289 ---SKWR-GDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 289 ---~~~~-G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
...+ ..........++.+....|.+|++.|+-.
T Consensus 360 ~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 360 GINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 0000 01111234456667778999999999943
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >PLN02165 adenylate isopentenyltransferase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0043 Score=63.48 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
...++|.||+|+|||+++..+|..++..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 3468999999999999999999999887665543
|
|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0079 Score=55.74 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+.|.|+||+|||++++.++..+ +..+..++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 44678999999999999999999987 4445556553
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0054 Score=57.63 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46889999999999999999998876543
|
|
| >KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.15 Score=53.23 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=60.2
Q ss_pred CeEEEEcCccchhh----hccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe--CCC--------------CCCC
Q 010888 311 PSTIFLDEIDAIIS----QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT--NLP--------------WELD 370 (498)
Q Consensus 311 p~VL~IDEiD~l~~----~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT--n~p--------------~~Ld 370 (498)
|-++.||++.++.. .+.....-.-..-.+...+...+.+-...+ .++.++. .-+ ..++
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g--~vi~a~s~~~~~~a~~h~gv~~y~pr~llg 393 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFG--SVIMAISGVTTPSAFGHLGVAPYVPRKLLG 393 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccc--eEEEEecccccchhccccccccCCchHhcC
Confidence 56888999999987 222221111111234445555555443333 3333333 111 1133
Q ss_pred HHHHh---cccceeEecCCCHHHHHHHHHHhcCCCCCCCCC----CHHHHHHHhcCCcHHHHHHHHH
Q 010888 371 AAMLR---RLEKRILVPLPDTEARRAMFESLLPSQTGEESL----PYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 371 ~al~~---Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~----~l~~La~~t~g~s~~dL~~L~~ 430 (498)
+.... -| ..++++.++.+|-.+++..++...-+..++ ..+++-- ..+.+|+.++.+|.
T Consensus 394 ~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~f-LSngNP~l~~~lca 458 (461)
T KOG3928|consen 394 EEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYF-LSNGNPSLMERLCA 458 (461)
T ss_pred ccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhh-hcCCCHHHHHHHHH
Confidence 33322 34 346778889999999998887665443222 2333322 23567777766654
|
|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0055 Score=56.83 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.++..++|.|+||+|||++++.+++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999999885
|
|
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.019 Score=59.04 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=44.3
Q ss_pred Cc-cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEE
Q 010888 217 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNI 282 (498)
Q Consensus 217 ~~-~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v 282 (498)
|+ ++.|+++.+.++.+.+...-. ++....+-++|.||+|+|||++++.+-+-+ ..+++.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 45 899999999999887654321 123333567899999999999999999877 3455554
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.036 Score=51.05 Aligned_cols=28 Identities=39% Similarity=0.632 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||+|++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566789999999999999999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.073 Score=52.14 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=52.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCeE--------------EEEeccccchhcccCcH---HHHHHHHHHHHhc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-----KTTF--------------FNISASSVVSKWRGDSE---KLIKVLFELARHH 309 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-----~~~~--------------i~v~~s~l~~~~~G~~~---~~l~~~f~~a~~~ 309 (498)
+.++|+||..+|||++.|.++-.. |..+ ..+...+-.....+... +.+..+++.+.
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~-- 121 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNAT-- 121 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH----
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcc--
Confidence 578999999999999999998744 4221 12222211111111222 23444555443
Q ss_pred CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 310 APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
..++|+|||+..= ........+...++..+. .. .+..++.+|+..+.
T Consensus 122 ~~sLvliDE~g~g--------T~~~eg~ai~~aile~l~---~~-~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 122 EKSLVLIDELGRG--------TNPEEGIAIAIAILEYLL---EK-SGCFVIIATHFHEL 168 (235)
T ss_dssp TTEEEEEESTTTT--------SSHHHHHHHHHHHHHHHH---HT-TT-EEEEEES-GGG
T ss_pred cceeeecccccCC--------CChhHHHHHHHHHHHHHH---Hh-ccccEEEEeccchh
Confidence 4589999999532 112222334444444443 11 12456778887654
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.03 Score=63.21 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+-|.|++|||||||+|.+..-.
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556679999999999999999998855
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.09 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
+.+-++|+||.|+|||++.+.++..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4456899999999999999998753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 498 | ||||
| 2qp9_X | 355 | Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | 3e-74 | ||
| 3eih_A | 340 | Crystal Structure Of S.Cerevisiae Vps4 In The Prese | 4e-73 | ||
| 2rko_A | 331 | Crystal Structure Of The Vps4p-Dimer Length = 331 | 2e-72 | ||
| 3eie_A | 322 | Crystal Structure Of S.Cerevisiae Vps4 In The So4-B | 2e-72 | ||
| 2zam_A | 444 | Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt | 4e-70 | ||
| 1xwi_A | 322 | Crystal Structure Of Vps4b Length = 322 | 6e-70 | ||
| 3d8b_A | 357 | Crystal Structure Of Human Fidgetin-Like Protein 1 | 6e-62 | ||
| 3b9p_A | 297 | Spastin Length = 297 | 2e-61 | ||
| 3vfd_A | 389 | Human Spastin Aaa Domain Length = 389 | 1e-57 | ||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 5e-41 | ||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 5e-41 | ||
| 3cf0_A | 301 | Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH | 6e-41 | ||
| 3h4m_A | 285 | Aaa Atpase Domain Of The Proteasome- Activating Nuc | 2e-40 | ||
| 4b4t_L | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-37 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 2e-37 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 2e-37 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 2e-37 | ||
| 4b4t_K | 428 | Near-Atomic Resolution Structural Model Of The Yeas | 4e-37 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 5e-36 | ||
| 2x8a_A | 274 | Human Nuclear Valosin Containing Protein Like (Nvl) | 9e-36 | ||
| 4b4t_J | 405 | Near-Atomic Resolution Structural Model Of The Yeas | 1e-35 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 3e-34 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-34 | ||
| 4b4t_I | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 5e-34 | ||
| 4b4t_H | 467 | Near-Atomic Resolution Structural Model Of The Yeas | 8e-34 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 1e-33 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 3e-32 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 6e-31 | ||
| 2qz4_A | 262 | Human Paraplegin, Aaa Domain In Complex With Adp Le | 4e-30 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 1e-27 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 2e-27 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-27 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-27 | ||
| 3mhv_C | 117 | Crystal Structure Of Vps4 And Vta1 Length = 117 | 1e-06 | ||
| 1ksf_X | 758 | Crystal Structure Of Clpa, An Hsp100 Chaperone And | 9e-06 | ||
| 3pvs_A | 447 | Structure And Biochemical Activities Of Escherichia | 5e-04 | ||
| 3qmz_A | 2486 | Crystal Structure Of The Cytoplasmic Dynein Heavy C | 7e-04 | ||
| 1jbk_A | 195 | Crystal Structure Of The First Nucelotide Binding D | 7e-04 | ||
| 4ai6_A | 2695 | Dynein Motor Domain - Adp Complex Length = 2695 | 8e-04 |
| >pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | Back alignment and structure |
|
| >pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 | Back alignment and structure |
|
| >pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 | Back alignment and structure |
|
| >pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 | Back alignment and structure |
|
| >pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 | Back alignment and structure |
|
| >pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 | Back alignment and structure |
|
| >pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 | Back alignment and structure |
|
| >pdb|3B9P|A Chain A, Spastin Length = 297 | Back alignment and structure |
|
| >pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 | Back alignment and structure |
|
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 | Back alignment and structure |
|
| >pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 | Back alignment and structure |
|
| >pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 | Back alignment and structure |
|
| >pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
| >pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1 Length = 117 | Back alignment and structure |
|
| >pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator Of Clpap Protease: Structural Basis Of Differences In Function Of The Two Aaa+ Atpase Domains Length = 758 | Back alignment and structure |
|
| >pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa Length = 447 | Back alignment and structure |
|
| >pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 | Back alignment and structure |
|
| >pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain Of Clpb Length = 195 | Back alignment and structure |
|
| >pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-152
Identities = 135/305 (44%), Positives = 190/305 (62%), Gaps = 12/305 (3%)
Query: 198 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 257
+ L + + +I+ G V+W I G + AK+ L+E V++P P+ FTGL +P KG+LLF
Sbjct: 1 QKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLF 60
Query: 258 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 317
GPPG GKT+LA+AVATEC TF NISA+S+ SK+ GD EKL++ LF +ARH PS IF+D
Sbjct: 61 GPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 120
Query: 318 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELVFVLAATNLPWELDAAMLR 375
E+D+++S+R SEHEASRRLKTE L++ DGL + + + VLAATN P ELD A LR
Sbjct: 121 EVDSLLSERSS--SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR 178
Query: 376 RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM 434
R KR+ V LPD + R + LL Q L + T+GYSGSD+ ++K+AA+
Sbjct: 179 RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 238
Query: 435 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 493
+P+R L E ++ + I +D +LK R S A + YEK++ DYG
Sbjct: 239 EPIRELN------VEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292
Query: 494 SEILQ 498
++
Sbjct: 293 DITIK 297
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-151
Identities = 141/317 (44%), Positives = 191/317 (60%), Gaps = 29/317 (9%)
Query: 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKT 265
I+ P+VKWE + GLE AK LKEAV++P+K+P F G P GILL+GPPGTGK+
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 266 MLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 325
LAKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+D++DA+
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 326 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 385
RGE E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ RR E+RI +PL
Sbjct: 126 RGE--GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183
Query: 386 PDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444
PD AR MFE + Y L TEGYSGSDI +V K+A MQP+R++
Sbjct: 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243
Query: 445 EGRQEVAPDDELPQIG-------------------------PIRPEDVEIALKNTRPS-A 478
+ DDE ++ + +D A+K+TRP+
Sbjct: 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303
Query: 479 HLHAHRYEKFNADYGSE 495
+ E+F D+G E
Sbjct: 304 EDDLLKQEQFTRDFGQE 320
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 429 bits (1104), Expect = e-149
Identities = 138/322 (42%), Positives = 196/322 (60%), Gaps = 36/322 (11%)
Query: 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 267
I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+GILLFGPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 268 AKAVATECK-TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326
AKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + PS IF+DEID++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 327 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 386
E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+A+ RR EKRI +PLP
Sbjct: 122 SE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 387 DTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445
+ AR AMF+ L + + + L +T+GYSG+DI ++ ++A MQP+R++
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239
Query: 446 GRQEVAPDDELPQIG-------------------------------PIRPEDVEIALKNT 474
++ P P + D+ +L NT
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299
Query: 475 RPSAHLH-AHRYEKFNADYGSE 495
+P+ + H + +KF D+G E
Sbjct: 300 KPTVNEHDLLKLKKFTEDFGQE 321
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 430 bits (1106), Expect = e-149
Identities = 131/314 (41%), Positives = 191/314 (60%), Gaps = 12/314 (3%)
Query: 185 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 244
+K L NF + ++ LA + +I+ VK++ I G + AK+ L+E V++P P+ F
Sbjct: 83 KKKDLKNFRNVDSN-LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141
Query: 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 304
TGL +P +G+LLFGPPG GKTMLAKAVA E TFFNISA+S+ SK+ G+ EKL++ LF
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 305 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 363
+AR PS IF+D++D+++ +R E EH+ASRRLKTE LI+ DG+ + D+ V V+ AT
Sbjct: 202 VARELQPSIIFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259
Query: 364 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSG 422
N P ELD A+LRR KR+ V LP+ E R + ++LL Q + L T+GYSG
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319
Query: 423 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 482
SD+ ++K+AA+ P+R L E + ++ IR D +LK + S
Sbjct: 320 SDLTALAKDAALGPIRELK------PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQT 373
Query: 483 -HRYEKFNADYGSE 495
Y ++N D+G
Sbjct: 374 LEAYIRWNKDFGDT 387
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 426 bits (1096), Expect = e-148
Identities = 126/298 (42%), Positives = 188/298 (63%), Gaps = 11/298 (3%)
Query: 200 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 259
+ E + +I+ P V WE I G+E AK +KE VV P+ P FTGL P KGILLFGP
Sbjct: 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGP 125
Query: 260 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 319
PGTGKT++ K +A++ TFF+ISASS+ SKW G+ EK+++ LF +AR P+ IF+DEI
Sbjct: 126 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185
Query: 320 DAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLRRLE 378
D+++SQRG+ EHE+SRR+KTE L+Q+DG T S++ + V+ ATN P E+D A RRL
Sbjct: 186 DSLLSQRGD--GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243
Query: 379 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 437
KR+ +PLP+ AR+ + +L+ + S + +V++++ +SG+D+ + +EA++ P+
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303
Query: 438 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGS 494
R L + PD Q+ PI D E A + RPS + YE +N +G
Sbjct: 304 RSLQT--ADIATITPD----QVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 416 bits (1072), Expect = e-144
Identities = 144/342 (42%), Positives = 203/342 (59%), Gaps = 29/342 (8%)
Query: 181 NERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY 240
N+++ + + + + L +L I+ P+VKWE + GLE AK LKEAV++P+K+
Sbjct: 14 NKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73
Query: 241 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIK 300
P F G P GILL+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G+SEKL+K
Sbjct: 74 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 133
Query: 301 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360
LF +AR + PS IF+D++DA+ RGE E EASRR+KTELL+QM+G+ + V VL
Sbjct: 134 QLFAMARENKPSIIFIDQVDALTGTRGE--GESEASRRIKTELLVQMNGVGNDSQGVLVL 191
Query: 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419
ATN+PW+LD+A+ RR E+RI +PLPD AR MFE + + Y L TEG
Sbjct: 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251
Query: 420 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG------------------- 460
YSGSDI +V K+A MQP+R++ + DDE ++
Sbjct: 252 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEA 311
Query: 461 ------PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 495
+ +D A+K+TRP+ + E+F D+G E
Sbjct: 312 DELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 407 bits (1048), Expect = e-139
Identities = 141/337 (41%), Positives = 197/337 (58%), Gaps = 36/337 (10%)
Query: 193 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 252
D E + L L I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+
Sbjct: 109 DDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR 168
Query: 253 GILLFGPPGTGKTMLAKAVATECK-TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 311
GILLFGPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + P
Sbjct: 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228
Query: 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371
S IF+DEID++ R E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+
Sbjct: 229 SIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286
Query: 372 AMLRRLEKRILVPLPDTEARRAMFESLLPSQ-TGEESLPYDLLVERTEGYSGSDIRLVSK 430
A+ RR EKRI +PLP+ AR AMF L S + L +T+GYSG+DI ++ +
Sbjct: 287 AIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346
Query: 431 EAAMQPLRRLMVLLEGRQEVAPDDELPQIG------------------------------ 460
+A MQP+R++ ++ P P
Sbjct: 347 DALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLE 406
Query: 461 -PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 495
+ D+ +L +T+P+ + +KF D+G E
Sbjct: 407 PVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 1e-85
Identities = 94/283 (33%), Positives = 157/283 (55%), Gaps = 12/283 (4%)
Query: 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 264
R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 265 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 324
T+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 325 QRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRI 381
RG + A+ R+ ++L +MDG++ VF++ ATN P +D A+LR RL++ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 382 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441
+PLPD ++R A+ ++ L + + + L + T G+SG+D+ + + A +R +
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241
Query: 442 -------VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477
+ +E + IR + E A++ R S
Sbjct: 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 4e-83
Identities = 89/274 (32%), Positives = 146/274 (53%), Gaps = 18/274 (6%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 271
P+V W I LE+ + L A++ P++ P F L L G+LL GPPG GKT+LAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
A E F ++ +++ + G+SE+ ++ +F+ A++ AP IF DE+DA+ +R +
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--R 122
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 389
E AS R+ +LL +MDGL + VF++AATN P +D A+LR RL+K + V LP
Sbjct: 123 ETGASVRVVNQLLTEMDGLEARQQ-VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 390 ARRAMFESLLPSQTG---EESLPYDLLVE--RTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444
R A+ +++ + T + + + + R + Y+G+D+ + +EA++ LR+ M
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM--- 238
Query: 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 478
+ + E A K R S
Sbjct: 239 ----ARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 261 bits (668), Expect = 1e-81
Identities = 92/276 (33%), Positives = 152/276 (55%), Gaps = 7/276 (2%)
Query: 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 264
D +V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 265 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 324
T++A+AVA E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311
Query: 325 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRIL 382
+R + E E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ +
Sbjct: 312 KREKTHGEVE--RRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVD 368
Query: 383 VPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442
+ +PD R + + + + + + + T G+ G+D+ + EAA+Q +R+ M
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 478
L++ E + + + + +D AL + PSA
Sbjct: 429 LIDLEDETIDAEVMNSLA-VTMDDFRWALSQSNPSA 463
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 3e-78
Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 270
P+V++E I GLE + ++E V +P+K+P+ F + + P KGILL+GPPGTGKT+LAKA
Sbjct: 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70
Query: 271 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 330
VATE TF + S +V K+ G+ L+K +F+LA+ APS IF+DEIDAI ++R +A
Sbjct: 71 VATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL 130
Query: 331 SEHEA-SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 387
+ + +R +LL +MDG + V ++ ATN P LD A+LR R ++ I VP PD
Sbjct: 131 TGGDREVQRTLMQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 388 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447
+ R + + E + + + + TEG G++++ + EA M +R R
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE------LR 243
Query: 448 QEVAPDD 454
V DD
Sbjct: 244 DYVTMDD 250
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 9e-55
Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 29/272 (10%)
Query: 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 279
+ G A + + VV K + P + ++G G GK+ + V +
Sbjct: 6 LDGFYIAPAFMDKLVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRKMGINP 64
Query: 280 FNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA 335
+SA + S G+ KLI+ + A R +F++++DA + G
Sbjct: 65 IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVN 124
Query: 336 SR---RLKTELL-----IQMDGLTQSDEL--VFVLAATNLPWELDAAMLR--RLEKRILV 383
++ + +Q+ G+ E V ++ N L A ++R R+EK
Sbjct: 125 NQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184
Query: 384 PLPDTEAR--RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441
P + +F + +++P + +V+ + + G I A +
Sbjct: 185 PTREDRIGVCTGIFRT--------DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVR 236
Query: 442 --VLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471
V G +++ GP E ++ +
Sbjct: 237 KWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTI 268
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-45
Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 11/233 (4%)
Query: 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAKAVA 272
V ++ + G+ AK ++E V +K P+ F L + P KG LL GPPG GKT+LAKAVA
Sbjct: 3 VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAVA 60
Query: 273 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332
TE + F ++ + V G ++ LF+ AR AP +++DEIDA+ +R S
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 333 HEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 388
+ +T +LL++MDG+ + + V VLA+TN LD A++R RL++ + + LP
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179
Query: 389 EARRAMFE-SLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
+ RR +FE L + + + L E T G+SG+DI + EAA+ R
Sbjct: 180 QERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 8e-45
Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 8/234 (3%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 269
P+V+++ + G E AK + E +V +KYP+ + L + P KG+LL GPPGTGKT+LAK
Sbjct: 5 KPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAK 62
Query: 270 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 329
AVA E FF++ SS + + G ++ LFE A+ APS IF+DEIDAI R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 330 RSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 385
R +T +LL +MDG + V VLAATN P LD A++R R ++++LV
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 386 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
PD R + + + + + + T G +G+D+ + EAA+ R
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN 236
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-43
Identities = 85/233 (36%), Positives = 128/233 (54%), Gaps = 8/233 (3%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 269
+P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG GKT LA+
Sbjct: 34 APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 270 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 329
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 330 RS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 386
++ + +LL++MDG + D + V+AATN P LD A+LR R +++I + P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
D + R + + E + LL +RT G+ G+D+ + EAA+ R
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-43
Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTG 263
++ +P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG G
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVG 61
Query: 264 KTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 323
KT LA+AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 324 SQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKR 380
+RG ++ + +LL++MDG + D + V+AATN P LD A+LR R +++
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQ 180
Query: 381 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
I + PD + R + + E + LL +RT G+ G+D+ + EAA+ R
Sbjct: 181 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-43
Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 8/234 (3%)
Query: 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 268
+ + G + AK + E +V ++ P F L P KG+L+ GPPGTGKT+LA
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLA 62
Query: 269 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328
KA+A E K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG
Sbjct: 63 KAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122
Query: 329 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 385
H+ + ++L++MDG + +E + V+AATN P LD A+LR R +++++V L
Sbjct: 123 GLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 386 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439
PD R + + + + ++ T G+SG+D+ + EAA+ R
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-39
Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 15/249 (6%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 272
I + + + + ++ K +P +LL GPP +GKT LA +A
Sbjct: 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR--TPLVSVLLEGPPHSGKTALAAKIA 85
Query: 273 TECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
E F I + + + ++ + +K +F+ A S + +D+I+ ++
Sbjct: 86 EESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-- 143
Query: 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA-MLRRLEKRILVPLPDTEA 390
S + LL+ + + ++ T+ L ML I V P+
Sbjct: 144 -PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIAT 200
Query: 391 RRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAMQ--PLRRLMVLLE 445
+ E+L ++ + ++ +G G L+ E ++Q P R+ L
Sbjct: 201 GEQLLEALELLGNFKDK-ERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLA 259
Query: 446 GRQEVAPDD 454
+E
Sbjct: 260 LLREEGASP 268
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 94/250 (37%), Positives = 133/250 (53%), Gaps = 40/250 (16%)
Query: 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 268
G+ V ++ + G E A LKE VV +K P F + + P KGILL GPPGTGKT+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66
Query: 269 KAVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDA 321
+AVA E FF+IS S V E + V LF A+ HAP +F+DEIDA
Sbjct: 67 RAVAGEANVPFFHISGSDFV-------ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119
Query: 322 IISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDA 371
+ RG E R +T +LL++MDG S E + V+AATN P LD
Sbjct: 120 VGRHRGAGLGGGHDE---------REQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDP 169
Query: 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 429
A+LR R +K+I+V PD R+ + E ++ E + +++ +RT G+ G+D+ +
Sbjct: 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLV 229
Query: 430 KEAAMQPLRR 439
EAA+ R
Sbjct: 230 NEAALLAARE 239
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-35
Identities = 89/249 (35%), Positives = 128/249 (51%), Gaps = 40/249 (16%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 269
+P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG GKT LA+
Sbjct: 25 APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 82
Query: 270 AVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDAI 322
AVA E + F S S V E + V LFE A+ HAP +F+DEIDA+
Sbjct: 83 AVAGEARVPFITASGSDFV-------EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135
Query: 323 ISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAA 372
+RG E R +T +LL++MDG + D + V+AATN P LD A
Sbjct: 136 GRKRGSGVGGGNDE---------REQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPA 185
Query: 373 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 430
+LR R +++I + PD + R + + E + LL +RT G+ G+D+ +
Sbjct: 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245
Query: 431 EAAMQPLRR 439
EAA+ R
Sbjct: 246 EAALLAARE 254
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 5e-15
Identities = 65/420 (15%), Positives = 126/420 (30%), Gaps = 115/420 (27%)
Query: 108 QDFKMFYDAK----FGRKKIKEPEKGEITERPVSDGSS------LNSNGHVQNTSDMAVY 157
F +D K + + + E I + + L S + V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKFVE 84
Query: 158 EQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSP-DVK 216
E R + L + I ++P + E R + L D + +V
Sbjct: 85 EVLRINY---------KFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVS 132
Query: 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 276
++ ++ L E L P K +L+ G G+GKT +A V K
Sbjct: 133 --RLQPYLKLRQALLE---------------LRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 277 TT---FFNISASSVVSKW-----RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328
F I W E ++++L +L P+ + D + +
Sbjct: 176 VQCKMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLR 226
Query: 329 ARSEHEASRRL------KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRIL 382
S RRL + LL+ + + + +A L +IL
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLV-LLNV--QN-----------AKAWNAFNLS---CKIL 269
Query: 383 VPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR-LVSKEAAMQPLRRLM 441
+ T + + + L + T S L + + +++ L+ K +P
Sbjct: 270 L----TTRFKQVTDFLSAATTTHIS-----LDHHSMTLTPDEVKSLLLKYLDCRP----- 315
Query: 442 VLLEGRQEVAPDDELP-QIGPIRPEDVEI--ALKNTRPSAHLHAHRYEKFNADYGSEILQ 498
+LP ++ P + I + ++ N D + I++
Sbjct: 316 ------------QDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTTIIE 360
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 7e-07
Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 82/214 (38%)
Query: 7 VHNLDFDIRALTKCLKEG-----IITSRFIISKFI---IGPPHAFFYSFGSPPFQFSLAI 58
+ ++ +++ K E I+ I F + PP+ Y
Sbjct: 428 IPSIYLELKV--KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------------- 472
Query: 59 QLAGCCSVETERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFY-DAK 117
F+ + L I + F+M + D +
Sbjct: 473 --------------FYSHIGHHLKNIE----------HPER-------MTLFRMVFLDFR 501
Query: 118 FGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNT-SDMAVYEQYRTQFQGSGSTCLNGVL 176
F +KI+ D ++ N++G + NT + Y+ Y C N
Sbjct: 502 FLEQKIR------------HDSTAWNASGSILNTLQQLKFYKPY---------ICDN--- 537
Query: 177 ANVINERLQKPLLPNFDSAETRALAESLCRDIIR 210
+ ERL +L E L S D++R
Sbjct: 538 -DPKYERLVNAILDFLPKIEEN-LICSKYTDLLR 569
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-13
Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 51/306 (16%)
Query: 188 LLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 247
L ++ + + + E L R++I GL+ K ++E + + + L
Sbjct: 13 LRAEYEGSGAKEVLEELDRELI------------GLKPVKDRIRETAAL-LLVERARQKL 59
Query: 248 ----LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVVSKWRGDSE 296
+P + G PGTGKT +A +A K +++ +V ++ G +
Sbjct: 60 GLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTA 119
Query: 297 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 356
K + + A +F+DE + E EA L + D+L
Sbjct: 120 PKTKEVLKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM------ENNRDDL 170
Query: 357 VFVLAA----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 405
V +LA ++ + R+ I P E + +L Q
Sbjct: 171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230
Query: 406 ESLPYDLLVERTEGYS-GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRP 464
Y L ++ IR A ++ RL L I
Sbjct: 231 ALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF---TASSGPLDARALST---IAE 284
Query: 465 EDVEIA 470
ED+ +
Sbjct: 285 EDIRAS 290
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 1e-10
Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 33/197 (16%)
Query: 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTTF 279
G ENA+ V + IK K + +LL GPPGTGKT LA A+A E K F
Sbjct: 41 GQENAREACGVIVEL-IKSKKM------AGRAVLLAGPPGTGKTALALAIAQELGSKVPF 93
Query: 280 FNISASSVVSKWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEAR------- 330
+ S V S +E L++ R ++ E+ + E
Sbjct: 94 CPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKT 153
Query: 331 ----------SEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPWELDAAMLRR--- 376
++ +L + + ++ +++++ A +
Sbjct: 154 ISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEF 213
Query: 377 -LEKRILVPLPDTEARR 392
LE VPLP + +
Sbjct: 214 DLEAEEYVPLPKGDVHK 230
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAP 311
++L+GPPGTGKT LA+ +A ISA S V K I+ E AR +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGV---------KEIREAIERARQNRN 103
Query: 312 ---STI-FLDEI 319
TI F+DE+
Sbjct: 104 AGRRTILFVDEV 115
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 381 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 440
P+ EAR + + + + E G SG++++ V EA M LR
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-- 63
Query: 441 MVLLEGRQEVAPDD 454
E R V +D
Sbjct: 64 ----ERRVHVTQED 73
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-----SVVSK----------WRGDSE 296
+ +L+GPPG GKT A VA E +AS ++++ G +
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 297 KLIKVLFELARHHAPSTIFLDEIDAI 322
+ +H I +DE+D +
Sbjct: 138 HNEEAQNLNGKHFV---IIMDEVDGM 160
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 50/233 (21%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTT-----------FFNISASSVVSKWRGDSEKLIKVL 302
L G GTGKT ++K + E + ++ V + L L
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107
Query: 303 FELARHHA------------------PSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 344
+ + I+LDE+D ++ +RG ++ R +
Sbjct: 108 TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISV 167
Query: 345 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 404
I + N+ ++ +L L ++ D E + +
Sbjct: 168 I------------MISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI 215
Query: 405 EESLPYD---LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 454
+ + + + + G D R A+ L R L G + +
Sbjct: 216 KGTYDDEILSYIAAISAKEHG-DAR-----KAVNLLFRAAQLASGGGIIRKEH 262
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-06
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 446
D +R +F ++ E + + V R + SG+DI + +E+ M +R E
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVR------EN 55
Query: 447 RQEVAPDD 454
R V D
Sbjct: 56 RYIVLAKD 63
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-06
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 384 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443
P P+ EAR + + + + E G SG++++ V EA M LR
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR----- 55
Query: 444 LEGRQEVAPDD 454
E R V +D
Sbjct: 56 -ERRVHVTQED 65
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 8e-05
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 272
I G E+ K L V P G+ G+L+FG GTGK+ +A+A
Sbjct: 26 IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALA 66
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 2e-04
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 410 YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 454
D L+ R + SG+ I + +EA ++ +R + R + D
Sbjct: 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAVR------KNRYVILQSD 60
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 252 KGILLFGPPGTGKTMLAKAVATEC------KTTFFNIS 283
KG+ G PG GKT LA A + FF+
Sbjct: 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 100.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 100.0 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 100.0 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.98 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.97 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.97 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.97 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.96 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.96 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.96 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.96 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.94 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.92 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.85 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.83 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.83 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.83 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.82 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.8 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.78 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.77 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.77 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.77 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.75 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.74 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.74 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.73 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.72 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.72 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.72 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.72 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.71 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.71 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.71 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.69 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.69 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.69 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.68 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.66 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.66 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.66 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.66 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.66 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.66 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.65 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.65 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.64 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.64 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.63 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.63 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.63 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.62 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.62 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.62 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.61 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.61 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.59 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.57 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.55 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.55 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.54 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.52 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.49 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.47 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.4 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.35 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.34 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 99.33 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.28 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.22 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 99.12 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.11 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.07 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.04 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 99.0 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 99.0 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 98.97 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.83 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.83 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.82 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.79 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.73 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.64 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.61 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 98.51 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.51 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.49 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.34 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.2 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.17 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.15 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.14 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.03 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 97.97 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.79 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.72 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.68 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.65 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.64 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.62 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.59 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.56 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.55 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.49 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.46 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 97.45 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.44 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.43 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.43 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.38 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.38 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.37 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.36 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.3 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.29 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.27 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.25 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.24 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.23 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.23 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.23 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.15 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.13 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.13 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.1 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.09 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.08 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.08 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.08 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.06 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.05 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.04 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.0 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.99 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.97 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.96 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.96 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.95 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.95 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.93 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.92 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.91 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.91 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.91 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.9 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.9 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.9 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.89 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.88 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.85 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.84 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.84 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.82 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.82 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.8 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.8 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.79 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.79 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.78 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.78 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.78 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.78 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.78 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.77 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.76 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.74 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.73 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.68 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.68 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.66 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.66 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.66 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.64 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.62 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.62 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.58 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.57 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.56 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 96.56 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.54 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.54 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.53 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.51 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.5 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.49 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.49 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.45 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.42 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.41 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.4 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.33 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.33 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.3 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.28 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.26 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.23 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.23 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.17 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.17 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.16 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.14 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.12 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.12 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.11 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 96.1 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.09 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.08 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.08 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 96.07 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.06 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.05 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.04 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 95.99 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 95.94 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 95.92 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.9 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.9 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.87 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.83 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.82 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.74 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.74 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.73 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.71 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 95.68 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.65 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.64 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.64 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 95.63 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.62 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 95.58 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.57 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 95.57 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.56 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.55 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.53 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.51 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.51 | |
| 2dl1_A | 116 | Spartin; SPG20, MIT, structural genomics, NPPSFA, | 95.5 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 95.47 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.46 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.46 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.44 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 95.44 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.43 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.41 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.4 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 95.39 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.37 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.34 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.3 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 95.29 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.27 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.24 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.22 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 95.2 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.17 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 94.99 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 94.94 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 94.88 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 94.86 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 94.84 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.83 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.82 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 94.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 94.8 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 94.75 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 94.73 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 94.73 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 94.68 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 94.68 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.67 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.63 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 94.61 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 94.61 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 94.53 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 94.53 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.48 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 94.46 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 94.45 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.45 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.43 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.41 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.31 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 94.09 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 94.07 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 93.98 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 93.88 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 93.86 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 93.81 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 93.81 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 93.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 93.78 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.74 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.67 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 93.67 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 93.66 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 93.61 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.55 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 93.53 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 93.46 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 93.45 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 93.44 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 93.39 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 93.38 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 93.32 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 93.31 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 93.3 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 93.28 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 93.28 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 93.27 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.27 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.26 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.17 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.12 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 92.97 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 92.96 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 92.93 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 92.92 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 92.91 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 92.9 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.82 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 92.73 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 92.7 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 92.68 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 92.68 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 92.63 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 92.63 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 92.62 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 92.52 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 92.5 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 92.49 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 92.4 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 92.4 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 92.39 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 92.38 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 92.37 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 92.36 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 92.35 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 92.35 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 92.32 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 92.28 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 92.28 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 92.27 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 92.26 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 92.26 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 92.24 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 92.23 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 92.21 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 92.19 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 92.15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 92.14 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 92.13 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.08 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 92.08 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 92.07 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 92.04 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 92.04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 92.03 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 92.02 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 92.02 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 92.0 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 92.0 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 91.99 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 91.96 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 91.94 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 91.94 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 91.93 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 91.91 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 91.84 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 91.77 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 91.75 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 91.72 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 91.72 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 91.7 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 91.6 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 91.57 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 91.54 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 91.54 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 91.53 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 91.5 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 91.49 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 91.43 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 91.34 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 91.34 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 91.28 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 91.26 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 91.24 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 91.2 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 91.16 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 91.16 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 91.12 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 91.1 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 91.08 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 91.08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 91.07 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 91.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 90.99 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 90.98 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 90.92 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 90.91 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 90.89 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 90.89 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 90.85 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 90.81 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 90.8 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 90.75 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 90.69 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 90.68 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 90.64 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 90.61 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 90.61 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 90.56 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 90.56 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 90.54 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 90.5 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 90.47 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 90.43 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 90.4 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 90.38 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 90.27 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 90.27 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 90.26 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 90.25 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 90.23 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 90.19 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 90.17 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 90.15 | |
| 3eab_A | 89 | Spastin; spastin, MIT, ESCRT, alternative splicing | 90.12 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 90.11 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 90.08 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 90.06 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 90.06 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 90.05 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 90.03 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 90.02 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 89.99 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 89.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 89.9 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 89.89 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 89.88 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 89.87 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 89.86 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 89.82 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 89.8 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 89.77 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 89.76 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 89.74 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 89.72 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 89.68 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 89.65 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 89.65 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 89.64 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 89.6 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 89.5 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 89.38 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 89.36 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 89.34 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 89.34 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 89.33 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 89.27 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 89.25 | |
| 3ch4_B | 202 | Pmkase, phosphomevalonate kinase; parallel beta-sh | 89.23 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 89.23 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 89.19 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 89.19 | |
| 1dek_A | 241 | Deoxynucleoside monophosphate kinase; transferase, | 89.17 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 89.15 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 89.12 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 89.06 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 89.06 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 88.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 88.97 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 88.96 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 88.93 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 88.92 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 88.86 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 88.85 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 88.85 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 88.85 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 88.84 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 88.83 |
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=379.50 Aligned_cols=258 Identities=34% Similarity=0.560 Sum_probs=233.1
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+......+.|+++|+||+|++++|++|++.+.+|+.+|+.|.+. ..+++++|||||||||||++|+++|++++.+|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34455667899999999999999999999999999999999874 78889999999999999999999999999999999
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
+++++.++|.|++++.++.+|..|+..+||||||||+|++++.+.... ..+...++++++|+..|+++... .+|+||+
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIa 292 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIM 292 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEe
Confidence 999999999999999999999999999999999999999999876533 23345577889999999998654 4599999
Q ss_pred EeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 362 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 362 aTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
|||+|+.||++++| ||+..+++++|+.++|.+||+.+++..+...+.+++.+|+.|.||||+||..+|++|+..++|+
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999999999999999999999888999999999999999999999999999998874
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 480 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~ 480 (498)
+. ..|+++||..|++++.++..+
T Consensus 373 ------~~------------~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 ------RR------------IHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp ------TC------------SBCCHHHHHHHHHHHHHHHTC
T ss_pred ------CC------------CCcCHHHHHHHHHHHhCcccc
Confidence 11 239999999999988765443
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=371.79 Aligned_cols=262 Identities=33% Similarity=0.560 Sum_probs=229.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+++.|... ..++++||||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 346799999999999999999999999999999999875 7899999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|.+++.++.+|..|+..+||||||||+|.++..|.... .......+.+..++..|++..... +|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG-NIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT-TEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC-cEEEEeCCCCc
Confidence 9999999999999999999999999999999999998886533 334455678889999999886544 59999999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||++++| ||+..+++++|+.++|.+||+.+++..+...+++++.||+.|.||||+||+.+|++|++.++|+-
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999988889999999999999999999999999999998851
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh--hHHHHHHHH
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN 489 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~--~~~~~~~~~ 489 (498)
. ..++.+||..|++++.++..+ ...+|.+||
T Consensus 435 --~------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --R------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --C------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --C------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 1 138999999999998765442 357788886
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-44 Score=372.55 Aligned_cols=255 Identities=33% Similarity=0.566 Sum_probs=231.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+|+.|.+. .+++++||||||||||||++|+++|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 346799999999999999999999999999999998875 7888999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|.+++.++.+|..|+..+||||||||+|.+++.|...... .....+++..|+..|+++.... +|+||+|||+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIaaTNrp 330 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAATNRV 330 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEEECSSC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEEeCCCc
Confidence 999999999999999999999999999999999999988654332 3345677889999999987544 58899999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||++++| ||+..+++++|+.++|.+||+.+++..+...+++++.||+.|.||||+||.++|++|+..++|+-
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999988 99999999999999999999999999888889999999999999999999999999999988751
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 482 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~ 482 (498)
. ..|+.+||..|+++++|+.+..+
T Consensus 407 --~------------~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 407 --Q------------SSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp --C------------SSBCHHHHHHHHHSCSSSCCCCC
T ss_pred --C------------CCcCHHHHHHHHHHHhCCCCcCc
Confidence 1 23999999999999999876543
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=368.18 Aligned_cols=253 Identities=34% Similarity=0.548 Sum_probs=229.1
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+++.|... ..++++||||||||||||++|+++|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 346799999999999999999999999999999999875 7888999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|++++.++.+|..|+..+||||||||+|++++.|..... ......+.+..++..+++..... +|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~-~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG-DVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS-SEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCh
Confidence 99999999999999999999999999999999999998864332 23345677889999999886544 59999999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||++++| ||+..|++++|+.++|.+||+.+++..+...+++++.||+.|.||||+||+++|++|+..++|+
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~----- 406 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE----- 406 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999999 9999999999999999999999999998888999999999999999999999999999998874
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 480 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~ 480 (498)
.. ..|+++||..|++++.|+..+
T Consensus 407 -~~------------~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 407 -RR------------MQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp -TC------------SCBCHHHHHHHHHHHHHHHCC
T ss_pred -CC------------CccCHHHHHHHHHHHhCCCCh
Confidence 11 239999999999998776543
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=369.78 Aligned_cols=261 Identities=33% Similarity=0.584 Sum_probs=228.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.....|+++|+||+|++++|++|++.+.+|+.+|+.|... ..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 3446799999999999999999999999999999999875 788899999999999999999999999999999999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
+.++|.|.+++.++.+|..|+...||||||||+|.+++.|..... ......++++.||..|+++.... +|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEEEEESS
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEEEecCC
Confidence 999999999999999999999999999999999999988754332 33445678899999999987544 5889999999
Q ss_pred CCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 366 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 366 p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
|+.||++++| ||+..|++++|+.++|.+||+.+++..+...+.+++.+|+.|.||||+||..+|++|+..++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~---- 405 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD---- 405 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT----
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999998 7999999999999999999999999988888999999999999999999999999999998874
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHHH
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFN 489 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~~~~~~~~ 489 (498)
.. ..|+.+||..|++++.|+.. ...+.+|.
T Consensus 406 --~~------------~~i~~~d~~~Al~~v~~~~k--~e~~~e~~ 435 (437)
T 4b4t_L 406 --DR------------DHINPDDLMKAVRKVAEVKK--LEGTIEYQ 435 (437)
T ss_dssp --TC------------SSBCHHHHHHHHHHHHHTCC----------
T ss_pred --CC------------CCCCHHHHHHHHHHHHhccC--cccchhhh
Confidence 11 13999999999999887643 33344443
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=400.71 Aligned_cols=285 Identities=34% Similarity=0.615 Sum_probs=196.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|++|+|++++|++|++.+.+|+++++.|.+. ..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 34688999999999999999999999999999998875 78889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc-chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
++|+|++++.++.+|..|+...||||||||+|++++.|... ...+...++++++||.+|+++... .+|+||+|||+|+
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~-~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPD 627 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS-SSEEEECC-CCSS
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC-CCEEEEEeCCCch
Confidence 99999999999999999999999999999999999988643 234556788999999999999754 4599999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.||++++| ||++.+++++|+.++|.+||+.++++.+...+++++.||+.|+||||+||.++|++|+..++|+......
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~ 707 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 9999999999999999999999999998888999999999999999999999999999999998654221
Q ss_pred chhc-------cCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 446 GRQE-------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 446 ~~~~-------~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
.... ..........++|+++||.+||++++||.++ ++..|++|.+.|++.
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 708 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp --------------------CCC----CCTTTC---------------CCCC------
T ss_pred hhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 1100 0001111223569999999999999999886 589999999998764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=344.38 Aligned_cols=283 Identities=48% Similarity=0.829 Sum_probs=245.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l~ 288 (498)
...|+++|++|+|++++|+.|++.+.+|+.+++.+.+...+++++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 456889999999999999999999999999999988777788999999999999999999999999 8999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
+.+.|.+++.++.+|..++...|+||||||+|.+.+.++.. .....+++++.++..++++......++||++||.|+.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999998877654 2345678899999999998766677999999999999
Q ss_pred CCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 369 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 369 Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
++++++|||+..+++++|+.++|..|++.++...+.. .+.++..+++.+.||+++||..+|++|+..++|+......-.
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999998776654 456788999999999999999999999999999876431100
Q ss_pred h--cc------------------------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhch
Q 010888 448 Q--EV------------------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 494 (498)
Q Consensus 448 ~--~~------------------------------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~ 494 (498)
. .. .+.+. ....+|+++||..||+.++||.+. ++..|++|+++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGG-BCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred hhccccccccccccccccccccccccchhhcccccccccc-ccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 0 00 00000 012479999999999999999875 58999999999998
Q ss_pred h
Q 010888 495 E 495 (498)
Q Consensus 495 ~ 495 (498)
+
T Consensus 321 ~ 321 (322)
T 1xwi_A 321 E 321 (322)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=354.05 Aligned_cols=252 Identities=37% Similarity=0.609 Sum_probs=227.0
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+++.|... ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 346789999999999999999999999999999998875 7889999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|.+++.++.+|..|+..+||||||||+|.+++.|..... .+....+++++|+..|+++.... +|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 99999999999999999999999999999999999998854332 23345778999999999986544 58999999999
Q ss_pred CCCCHHHHh--cccceeEec-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 367 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~-~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
+.||++++| ||+..|++| +|+.++|..||+.+++..+...+.+++.+|..|.||||+||..+|++|++.++|+
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~---- 397 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---- 397 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----
Confidence 999999999 999999996 8999999999999999988888999999999999999999999999999998875
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhc-cCCChh
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIALKN-TRPSAH 479 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL~~-~~ps~~ 479 (498)
+. ..|+++||.+|+.. ++++.+
T Consensus 398 --~~------------~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 398 --NR------------YVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp --TC------------SSBCHHHHHHHHHHHSCSCCC
T ss_pred --CC------------CCCCHHHHHHHHHHhhCccCC
Confidence 11 13999999999976 455543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=343.21 Aligned_cols=286 Identities=49% Similarity=0.795 Sum_probs=244.8
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 207 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 207 ~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.+....|+++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34556789999999999999999999999999999988887788899999999999999999999999999999999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....+++++.++..+++.......++||+|||.|
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998876432 23345778899999999886666779999999999
Q ss_pred CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 367 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 367 ~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
+.|++++++||+..+++++|+.++|..|++.++...+.. .+.++..+++.+.||+++||..+|++|+..++++..+...
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999877654 4567889999999999999999999999999999876422
Q ss_pred chhcc--------------------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 446 GRQEV--------------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 446 ~~~~~--------------------------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
..... .+.+ .....+|+++||..|++.++||.+. ++.+|++|+++||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSS-CBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 11000 0000 1123569999999999999999875 589999999999986
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=338.21 Aligned_cols=290 Identities=49% Similarity=0.808 Sum_probs=232.8
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+...+....|+++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.++
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 34445556788999999999999999999999999999998887788899999999999999999999999999999999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
++++.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....+++.+.|+..++++......++||++|
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at 194 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGAT 194 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeec
Confidence 9999999999999999999999999999999999999998876543 33456788899999999886656679999999
Q ss_pred CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 364 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 364 n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
|.++.+++++++||+..+++++|+.++|..||+.++...+.. .+.+++.|++.+.||+++||..+|++|...++++...
T Consensus 195 n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 195 NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877653 4567889999999999999999999999999998654
Q ss_pred Hhhchh------------ccCCCC-------------CCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 443 LLEGRQ------------EVAPDD-------------ELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 443 ~le~~~------------~~~~~~-------------~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
...... ...+.+ ......+|+++||..|++.++||++. ++..|++|.++||++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC--
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 311000 000000 00013469999999999999999876 579999999999986
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=342.68 Aligned_cols=291 Identities=47% Similarity=0.812 Sum_probs=237.4
Q ss_pred HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEE
Q 010888 202 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFF 280 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i 280 (498)
..+...+....|+++|++|+|++++++.|.+.+.+|+.+++.+.+...+++++||+||||||||++|+++|+++ +.+++
T Consensus 118 ~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 118 NQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp ------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred HHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 34455566678899999999999999999999999999999887666778999999999999999999999999 89999
Q ss_pred EEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 281 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 281 ~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
.++++++.+.+.|..+..++.+|..++...|+||||||+|.+.+.+... .....+++++.++..++++.....+++||
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 9999999999999999999999999999999999999999998876543 23445788999999999886556679999
Q ss_pred EEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 361 aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
+|||.|+.++++++|||+..+++++|+.++|..|++.++...+.. .+.++..|+..+.||+++||..+|++|+..++|+
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776643 4567899999999999999999999999999999
Q ss_pred HHHHhhchhc---------------c-----------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHH
Q 010888 440 LMVLLEGRQE---------------V-----------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYE 486 (498)
Q Consensus 440 l~~~le~~~~---------------~-----------------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~ 486 (498)
......-... . .+.+. ....+|+++||..||+.++||.+. ++..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~ 434 (444)
T 2zan_A 356 VQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMWDMLRSLSSTKPTVNEQDLLKLK 434 (444)
T ss_dssp HHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC-BCCCCEEHHHHHHHHHTCCCSCCHHHHHHHH
T ss_pred HHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh-ccCCccCHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 7653100000 0 00000 012479999999999999999875 589999
Q ss_pred HHHHHhchh
Q 010888 487 KFNADYGSE 495 (498)
Q Consensus 487 ~~~~~~g~~ 495 (498)
+|+++||++
T Consensus 435 ~~~~~~~~~ 443 (444)
T 2zan_A 435 KFTEDFGQE 443 (444)
T ss_dssp HHTSSCTTT
T ss_pred HHHHHHcCC
Confidence 999999986
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=317.20 Aligned_cols=286 Identities=34% Similarity=0.621 Sum_probs=239.6
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
+++....|.++|++|+|++++++.|++.+.+++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 455567789999999999999999999999999999887764 6778999999999999999999999999999999999
Q ss_pred cccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 285 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
+++.+.+.|..++.++.+|..+....|+||||||+|.+.+.++.... ......++++.++..++++... .+++||++|
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~at 161 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEec
Confidence 99999999999999999999999999999999999999987643211 1122356778899999987543 458999999
Q ss_pred CCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 364 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 364 n~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
|.++.+++++++ ||+..+++++|+.++|.+|++.+++..+...+.+++.++..+.||+|+||+.+|++|...++++..
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999999999999999999999888777788999999999999999999999999999998765
Q ss_pred HHhhchhcc-------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHh
Q 010888 442 VLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADY 492 (498)
Q Consensus 442 ~~le~~~~~-------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~ 492 (498)
......... ..........+|+++||..||+.++||.+. ++..|++|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 432111000 000000112469999999999999999876 579999999988
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=357.36 Aligned_cols=265 Identities=34% Similarity=0.570 Sum_probs=235.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
..|.++|+||+|+++++++|++.+.+|+.+|+.|..+ ..++++||||||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 3578999999999999999999999999999999886 788999999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
++.|++++.++.+|..|+..+|+||||||+|.+++.++... ++..++++++|+..|+++.... +|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence 99999999999999999999999999999999999876543 3345789999999999986544 59999999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|++++| ||++.+++++|+.++|.+||+.+++......++++..+|.+|.||+++||..+|++|+..+++|........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999999988999999999999999999999999999999999977655433
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
......+.. ....++++||..|++.++|+..
T Consensus 434 ~~~~~~e~~-~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 434 DETIDAEVM-NSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp CCCCSHHHH-HHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccchhhh-ccceeeHHHHHHHHHhCCCccc
Confidence 221111100 1123899999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=315.84 Aligned_cols=285 Identities=43% Similarity=0.740 Sum_probs=237.5
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+.+++....++.+|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.+
T Consensus 69 ~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 69 LIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp HHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 45666777788999999999999999999999999988888877777889999999999999999999999999999999
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLA 361 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIa 361 (498)
+++++...+.|..+..++.+|..+....|+||||||+|.+.+.+... ......++++.++..+++... ...+++||+
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~ 226 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVG 226 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEE
T ss_pred ehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEE
Confidence 99999999999999999999999998899999999999998765432 233456788899999987643 345799999
Q ss_pred EeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 010888 362 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 362 aTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl 440 (498)
+||.++.+++++++||...+++++|+.++|..+++.++...... .+.+++.+++.+.||+++||..+|++||..++|++
T Consensus 227 atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 227 ATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp EESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred ecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988665433 34467889999999999999999999999999875
Q ss_pred HHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh-hhHHHHHHHHHHhchh
Q 010888 441 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 495 (498)
Q Consensus 441 ~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~-~~~~~~~~~~~~~g~~ 495 (498)
.+....... .....+|+.+||..|++.++||.+ +++..|++|.+.||+.
T Consensus 307 ~~~~~~~~~------~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 307 QTADIATIT------PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp CC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred hhhhhcccc------ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 432221111 122356999999999999999976 4689999999999974
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=306.63 Aligned_cols=287 Identities=46% Similarity=0.763 Sum_probs=231.8
Q ss_pred HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 202 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..+.+++....++.+|++|+|++.+++.+.+.+..+..+++.+.+...+++++||+||||||||++|+++|++++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp HHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 34556677778899999999999999999999999988888887777778999999999999999999999999999999
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC--CCcEEE
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELVFV 359 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~viV 359 (498)
++++++.+.+.|.....++.+|..+....|+||||||+|.+...++... .+....+.+.++..+++.... ...++|
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 9999999999999999999999999999999999999999987765322 223456778888888876432 346899
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~r 438 (498)
|++||.++.+++++++||+..+++++|+.++|..|++.++...... .+.++..+++.+.|++++||..++++|+..++|
T Consensus 163 i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988766543 334578899999999999999999999999998
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchhc
Q 010888 439 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 496 (498)
Q Consensus 439 rl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~~ 496 (498)
++.+....... .....+|+.+||..|+..++||... ++..|++|++.||+..
T Consensus 243 ~~~~~~~~~~~------~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~ 295 (297)
T 3b9p_A 243 ELNVEQVKCLD------ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDIT 295 (297)
T ss_dssp TCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-------
T ss_pred HHhhhhccccc------ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCee
Confidence 75433222111 1223459999999999999999765 5799999999999854
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=310.44 Aligned_cols=285 Identities=44% Similarity=0.710 Sum_probs=228.7
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+.+++....++++|++|+|++.+++.|.+.+..+..+++.+.+...+++++||+||||||||++|+++|++++.+++.++
T Consensus 101 ~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp GGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 45566667788999999999999999999999998888888877777899999999999999999999999999999999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIaa 362 (498)
++++.+.+.|..+..++.+|..+....|+||||||+|.+...+... ......++++.++..+++... ....++||++
T Consensus 181 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 181 AASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp SCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred HHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 9999999999999999999999999999999999999998765432 233456788889999987654 3456999999
Q ss_pred eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 363 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 363 Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
||.++.+++++++||...+++++|+.++|..|++.++...... .+..+..++..+.|+++++|..++++|+..+++++.
T Consensus 259 tn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 259 TNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp ESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred cCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999899999999999999999998775543 334678899999999999999999999999998754
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchhc
Q 010888 442 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 496 (498)
Q Consensus 442 ~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~~ 496 (498)
+....... ......|+.+||..+++..+|+.+. .+..|++|.+.||++.
T Consensus 339 ~~~~~~~~------~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~ 388 (389)
T 3vfd_A 339 PEQVKNMS------ASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT 388 (389)
T ss_dssp CC---CCS------SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred hhhhhccc------hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence 33222111 1223459999999999999999765 5899999999999864
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=288.29 Aligned_cols=261 Identities=33% Similarity=0.567 Sum_probs=205.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
..|+++|+||+|++++|+.|++.+.+|+.+++.+... ...+++++|+||||||||++++++|.+++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578999999999999999999999999999888765 677788999999999999999999999999999999999988
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
.+.|..++.++.+|+.+....|+++|+||+|.+...+... ......++.+.++..|++.... ..++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8888888999999999988889999999999987654321 1122345678899999987543 458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC---CCCCCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~---~~~~~~~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
|++++| ||+..+++++|+.++|.+||+.+++.. +...+.++..++..+ .||+|+||..+|++|+..++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 999999999999999999999998542 345678899999874 5999999999999999999987543
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 481 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~ 481 (498)
..... . .....+|+++||..|+++++||.+.+
T Consensus 240 ~~~~~------~-~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSG------N-EKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hcccc------c-cccCCeecHHHHHHHHHHhcCCCChh
Confidence 21110 0 01123599999999999999998754
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=306.63 Aligned_cols=281 Identities=32% Similarity=0.527 Sum_probs=228.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
+..+|++|+|++.++++|.+.+..++.+++.+... ..+++++||+||||||||++|++++++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 46789999999999999999999999999888876 67788999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
.|.....++.+|..+....|++|||||+|.+.++++.. ..+....+++.|+..+++.... .+++||+|||+++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876543 2345578899999999977543 45899999999999999
Q ss_pred HHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 372 al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
++++ ||+..+++++|+.++|.+||+.+++......+.++..++..+.||+++||..++++|+..++++..+.++....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9998 99999999999999999999999998888888899999999999999999999999999998875432221111
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchhcc
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEIL 497 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~~~~~~~~~g~~~~ 497 (498)
..... ......++++||..|++.++||...+ ..+-..|.+..|-+-|
T Consensus 436 ~~~~~-~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 436 TIDAE-VMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp SCCHH-HHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred ccchh-hcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccc
Confidence 00000 00123599999999999999998765 3677889999997654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=275.06 Aligned_cols=269 Identities=35% Similarity=0.557 Sum_probs=215.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|++|+|++++++.|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678999999999999999999999988888877665 56778999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|.....++.+|..+....|+||||||+|.+.+++...... .......+..++..+++.... .+++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence 99999999999999999999999999999999998776543221 222345566677777766443 4588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+++++++ ||...+.++.|+.++|.+|++.++.......+.++..++..+.|+++++|+.+++.|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999988887778899999999999999999999999998877641
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChh---hhHHHHHHHHHHhchhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNADYGSEIL 497 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~---~~~~~~~~~~~~~g~~~~ 497 (498)
...|+.+||.+|++++.+... ..-.+|..|..+||+.-+
T Consensus 243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
T 3h4m_A 243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHHH 284 (285)
T ss_dssp -------------CSSBCHHHHHHHHHHHHHHHCCC-------------------
T ss_pred -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCCC
Confidence 023999999999998765432 235888999999998644
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-31 Score=257.07 Aligned_cols=247 Identities=33% Similarity=0.519 Sum_probs=207.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...++.+|++|+|++++++.+.+.+.. +.+++.+... ...+++++|+||||||||++|++++++++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 346788999999999999999987654 5555555443 45678999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|...+.++.+|..+....|+++||||+|.+...++.... ........++.++..+++... ..+++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPD 161 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCch
Confidence 9899999999999999999888999999999999887654321 122334677889999998754 34588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+++++++ ||+..+++++|+.++|.+|++.+++..+...+.++..++..+.||+++||..++++|...+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998877777888899999999999999999999998877653
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
+ ...|+.+||..|++.+..
T Consensus 236 ~------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 N------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp T------------CSSBCHHHHHHHHHHHTT
T ss_pred C------------CCcccHHHHHHHHHHHhc
Confidence 0 123999999999988654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-31 Score=279.14 Aligned_cols=260 Identities=36% Similarity=0.556 Sum_probs=213.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|++|+|++++++++++.+.. +..+..+... ...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998765 4556555554 5677899999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|..+....|+||||||+|.+..+++... .......++++.|+..++++... .+++||++||+++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhh
Confidence 9998889999999999999999999999999988765321 12233456788999999877543 458999999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
++++++ ||+..+.+++|+.++|.+|++.+++..+...+.++..++..+.|++++||.+++++|+..+.++ +
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------~- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------G- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------T-
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------C-
Confidence 999988 9999999999999999999999998888777888999999999999999999999998877652 0
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh-------hhhHHHHHHHHHH
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA-------HLHAHRYEKFNAD 491 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~-------~~~~~~~~~~~~~ 491 (498)
...|+.+||..++.+..+.. +++...-..|++-
T Consensus 241 -----------~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~ 280 (476)
T 2ce7_A 241 -----------RDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEA 280 (476)
T ss_dssp -----------CSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHH
T ss_pred -----------CCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHh
Confidence 02399999999999876542 2233445555554
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=256.22 Aligned_cols=247 Identities=34% Similarity=0.522 Sum_probs=189.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
|+++|++|+|++++++.+++.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568899999999999999998765 5555554443 56778999999999999999999999999999999999998888
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch--hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
.|.....++.+|..+....|+||||||+|.+...+..... ........+..++..+++... ...+++|++||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence 8888888999999999888999999999999876543211 011223456778888887643 3458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~--l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
++++++ ||+..+++++|+.++|.+|++.++.......+.+ +..++..+.|+++++|..++++|+..+.++-.
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~---- 234 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH---- 234 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 999999 9999999999999999999999987766654433 36789999999999999999999887765311
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
..|+.+||..|++++.++..
T Consensus 235 --------------~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 235 --------------TSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHhccChh
Confidence 23899999999998876654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=268.08 Aligned_cols=261 Identities=34% Similarity=0.541 Sum_probs=215.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|++|+|++++++++++.+.. +..+..+... ...++++||+||||||||++|+++|.+++.+++.++++++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3789999999999999999997655 4455555544 5667889999999999999999999999999999999999888
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|+.+....|+++||||+|.+...++... ...+.....++.++..+++... ...++++++||+|+.|
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~L 182 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDIL 182 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGS
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhc
Confidence 8888888899999988877899999999999987665321 1233345678889999998754 3458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|+++++ ||+..+.+++|+.++|.+||+.+++......+.++..++..+.|++++||++++++|+..+.++ .
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------~- 255 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------G- 255 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT------C-
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------C-
Confidence 999998 8999999999999999999999998877777888999999999999999999999998876542 0
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh-------hhhHHHHHHHHHHh
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA-------HLHAHRYEKFNADY 492 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~-------~~~~~~~~~~~~~~ 492 (498)
...|+.+||..++.++.+.. +++.++...|++..
T Consensus 256 -----------~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g 296 (499)
T 2dhr_A 256 -----------RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAG 296 (499)
T ss_dssp -----------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHH
T ss_pred -----------CCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHH
Confidence 12399999999999876653 23345566666543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=239.70 Aligned_cols=243 Identities=37% Similarity=0.585 Sum_probs=197.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|.++|++++|.++++.++++.... ...+..+... ...+++++|+||||||||+++++++..++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4567889999999999999999987654 3344444433 4566789999999999999999999999999999999888
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
...+.+...+.+..+|+.+....|+++++||+|.+...+.... .........++.++..+++... ...++++++||.|
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~p 164 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRP 164 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESCG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCCc
Confidence 8777777778888999998877899999999999986654211 1122345667888888887754 3458899999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.+|+++++ ||+..++++.|+.++|.+||+.+++......+.++..++..+.|++++||..++++|...+.++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~----- 239 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE----- 239 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 8999999999999999999999988777777888999999999999999999999998876542
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
. ...|+.+|+++++
T Consensus 240 -~------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 -G------------RRKITMKDLEEAA 253 (254)
T ss_dssp -T------------CSSBCHHHHHHHT
T ss_pred -c------------CCCcCHHHHHHHh
Confidence 0 1239999999886
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-31 Score=263.09 Aligned_cols=253 Identities=34% Similarity=0.525 Sum_probs=202.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
..++.+|++|+|.+++++.+.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46788999999999999999997664 5666655543 566688999999999999999999999999999999999988
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch--hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+.|.....++.+|..+....|+||||||+|.+...+..... ........++.++..+++......+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 888877777788899998888999999999999876432110 000112345567777777655556689999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+++++++ ||+..+++++|+.++|.++++.+++......+.++..++..+.|++++||..+++.|...+.++
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~------ 236 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN------ 236 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS------
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998877777778888999999999999999999887754321
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 482 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~ 482 (498)
....|+.+|+..++....|+...+.
T Consensus 237 ------------~~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 237 ------------NQKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp ------------CCCSCCHHHHHTSCTTCCCCCC---
T ss_pred ------------ccCCcCHHHHHHHHHHHhhcchhhh
Confidence 0124999999999999999876543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=233.64 Aligned_cols=243 Identities=37% Similarity=0.581 Sum_probs=195.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|++++|.+++++++++.... ...+..+... ...+++++|+||||||||+++++++..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 345789999999999999999987654 3334333333 45567899999999999999999999999999999998887
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.+.....+..+|+.+....|+++++||+|.+...+.... .........++.++..+++... ...++++++||.|+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD 189 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTT
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCch
Confidence 777777777888999998877899999999999876543211 1122335567778888887653 34588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|+++++ ||+..+++++|+.++|.+||+.+++......+.++..++..+.|++++||+.++++|...+.++
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 263 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 263 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 8999999999999999999999988777777888999999999999999999999998776542
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
. ...|+.+|+++|++
T Consensus 264 ~------------~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 264 G------------RRKITMKDLEEAAS 278 (278)
T ss_dssp T------------CCSBCHHHHHHHTC
T ss_pred C------------CCCcCHHHHHHHhC
Confidence 0 12399999998863
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-25 Score=220.44 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=133.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHH----HhcCCeEEEEcCccchh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a----~~~~p~VL~IDEiD~l~ 323 (498)
..+++++||+||||||||++|+++|++++.+++.++++++.+.+.|..+..++.+|..+ +...|+||||||+|.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 56678999999999999999999999999999999999999999999999999999888 56789999999999998
Q ss_pred hhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHH
Q 010888 324 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 391 (498)
Q Consensus 324 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR 391 (498)
+.+..........+.+.+.|+..+++.. ....+++||+|||.++.+++++++ ||+..++ .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 8654332222234567788999987443 123468899999999999999997 8887675 6799999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 010888 392 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 427 (498)
Q Consensus 392 ~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~ 427 (498)
.+|++.++... +.+.+.+++.+.+|++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999887543 567888999999999988864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=191.92 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=161.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhc----cCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEecccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFT----GLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSV 287 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~----~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~l 287 (498)
+|+|++.+++.+.+.+..+.. +.... ....+..++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876442 22211 113455689999999999999999999988 348999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+.+.|.....+..+|..+ .++||||||+|.+...++.. ......++.|+..++.. ..++++|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~----~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER----DYGQEAIEILLQVMENN---RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc----cccHHHHHHHHHHHhcC---CCCEEEEEeCChHH
Confidence 9999998888888888776 35899999999997554321 12255677788888732 34577888887653
Q ss_pred -----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHh-------cCCcHHHHHHHHHHHHh
Q 010888 368 -----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT-------EGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 368 -----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t-------~g~s~~dL~~L~~~A~~ 434 (498)
.+++++++||...++|+.|+.+++..|++.++.......+. .+..++... ...+.+++..+++.+..
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 25789999999999999999999999999998765544332 244455542 23468999999999998
Q ss_pred HHHHHHHH
Q 010888 435 QPLRRLMV 442 (498)
Q Consensus 435 ~a~rrl~~ 442 (498)
.+..++..
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777664
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-23 Score=217.72 Aligned_cols=203 Identities=21% Similarity=0.270 Sum_probs=139.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccch
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS 289 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~ 289 (498)
.|...|++++|++++++.+...+... .....+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 45677999999999999998876442 22345668999999999999999999999998 9999999999999
Q ss_pred hcccCcHHHHHHHHHHH---HhcCCeEEEEcCccchhhhccccchhhH--HH---------------HHHHHHHHHHhhC
Q 010888 290 KWRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHE--AS---------------RRLKTELLIQMDG 349 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a---~~~~p~VL~IDEiD~l~~~r~~~~~~~~--~~---------------~~i~~~Ll~~ld~ 349 (498)
++.|.++. ++..|..+ +...|+||||||+|.+++++........ .. .++.+.++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 88999998 7788999999999999988754321110 00 0122335555542
Q ss_pred Cc-cCCCcEEEEEEeCCCCCCCHHHHh--cccc--eeEecCCC--HHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 010888 350 LT-QSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLPD--TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 422 (498)
Q Consensus 350 ~~-~~~~~viVIaaTn~p~~Ld~al~~--Rf~~--~i~~~~Pd--~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~ 422 (498)
.. ..+..++|++|||.++.+++++++ ||+. .++++.|+ .++|.+|++.+.. .+++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 21 234446666899999999999876 9987 56777774 4678877765542 267888888988 8
Q ss_pred HHHHHHHHH
Q 010888 423 SDIRLVSKE 431 (498)
Q Consensus 423 ~dL~~L~~~ 431 (498)
+|+..++..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999988854
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=185.01 Aligned_cols=251 Identities=21% Similarity=0.274 Sum_probs=164.5
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
++++|++++++.+...+..+......... ...++.++||+||||||||++|+++++.++.+++.++++++.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 36999999999999887654332221111 1234578999999999999999999999999999999998765 44443
Q ss_pred -cHHHHHHHHHHH-----HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-------CCCcEEEEE
Q 010888 295 -SEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 361 (498)
Q Consensus 295 -~~~~l~~~f~~a-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIa 361 (498)
....++.++..+ ....++||||||+|.+......... ......+++.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccccc-chhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 234455555422 1123689999999999876542221 22233457788888875421 223567787
Q ss_pred E----eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc---CCcHHHHHHHHHHHHh
Q 010888 362 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTE---GYSGSDIRLVSKEAAM 434 (498)
Q Consensus 362 a----Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~---g~s~~dL~~L~~~A~~ 434 (498)
+ ++.+..+++++++||+..+.+++|+.+++..|++..+.... ..+........ .++...+..+++.+|.
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT----EQYKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHH----HHHHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHH----HHHHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 7 45677899999999998899999999999999996442100 00011111111 2566677777777764
Q ss_pred -------HHHHHHHHHhhchh-----ccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 435 -------QPLRRLMVLLEGRQ-----EVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 435 -------~a~rrl~~~le~~~-----~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+++|++.+.++... .....+. ....|+.+|+.+++....
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~--~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNG--QTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTT--CEEEECHHHHHHHTCSSS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccC--CEEEEeeHHHHHHHHhhh
Confidence 56676666665432 1111111 112399999999998754
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=185.48 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=152.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeccccch
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVS 289 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s~l~~ 289 (498)
.|..+|++++|++.+++.+....... .....+++++||+||||||||++|++++++++. +++.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34556999999999999877654332 112344579999999999999999999999974 888888766432
Q ss_pred hcc-------------------------------------------------cCcHHHHHHHHHHHHh-----c----CC
Q 010888 290 KWR-------------------------------------------------GDSEKLIKVLFELARH-----H----AP 311 (498)
Q Consensus 290 ~~~-------------------------------------------------G~~~~~l~~~f~~a~~-----~----~p 311 (498)
.+. |.....++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 221 1112334444433322 1 26
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-----------CCCCCCCHHHHhcccce
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKR 380 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT-----------n~p~~Ld~al~~Rf~~~ 380 (498)
+||||||+|.+.. ...+.|+..++.. ..+++++++. |.+..+++++++||..
T Consensus 191 ~vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 7999999998843 3456677776532 2235444443 3467899999999966
Q ss_pred eEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCC
Q 010888 381 ILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQI 459 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~ 459 (498)
+.+++|+.+++..+++..+....... +..++.+++.+.+.+++++..+++.|...+.++ ..
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------------~~ 315 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------------KG 315 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------------------TC
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------------CC
Confidence 89999999999999998876544432 223566777776567788888888776655432 11
Q ss_pred CCCCHHHHHHHHhccC
Q 010888 460 GPIRPEDVEIALKNTR 475 (498)
Q Consensus 460 ~~It~eD~~~AL~~~~ 475 (498)
..|+.+|+.+++..+.
T Consensus 316 ~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 316 TEVQVDDIKRVYSLFL 331 (368)
T ss_dssp SSBCHHHHHHHHHHSB
T ss_pred CCCCHHHHHHHHHHhc
Confidence 2499999999998743
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=183.30 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=141.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
....+.+|++++|.+.+++.+...+..... ...+..++||+||||||||++|++++++++.+++.+++..+.
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 345567899999999999999988765321 123456899999999999999999999999999999997663
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc---------------CC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SD 354 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~ 354 (498)
....+...+.. ...+++|||||+|.+... .+..|+..++.... ..
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCC
Confidence 22233333322 345789999999988532 44556666654320 11
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
.++++|++||....+++++++||+..+.+++|+.+++..+++..+.......+ ..++.++..+.| +++++.++++.+.
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVR 231 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 24789999999999999999999889999999999999999988766543322 234455554443 5566666666554
Q ss_pred h
Q 010888 434 M 434 (498)
Q Consensus 434 ~ 434 (498)
.
T Consensus 232 ~ 232 (338)
T 3pfi_A 232 D 232 (338)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=176.36 Aligned_cols=233 Identities=19% Similarity=0.235 Sum_probs=146.5
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc-hhcccCc
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGDS 295 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~-~~~~G~~ 295 (498)
.+.++|.+...+.+.......... .......++.++||+||||||||++|+++|++++.+++.+++++.. +...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~--l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQ--TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHH--HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHH--HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 456888877766666531111100 0011135668999999999999999999999999999999886532 2111222
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH-HHH
Q 010888 296 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AML 374 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~-al~ 374 (498)
...++.+|..+....+++|||||+|.+...+.... .....+++.|...+++.......++||+|||.++.+++ .++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 35677788888777889999999999976543211 12255677777778776656667889999999888887 677
Q ss_pred hcccceeEecCCCH-HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 375 RRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 375 ~Rf~~~i~~~~Pd~-~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+||...+.+|.++. ++...++... .. ..+..+..+++.+.|++ |.+++|++.+.++......+
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~---~~-~~~~~~~~l~~~~~g~~-----------~~g~ir~l~~~l~~a~~~~~- 250 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELL---GN-FKDKERTTIAQQVKGKK-----------VWIGIKKLLMLIEMSLQMDP- 250 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHH---TC-SCHHHHHHHHHHHTTSE-----------EEECHHHHHHHHHHHTTSCG-
T ss_pred cccceEEcCCCccHHHHHHHHHHhc---CC-CCHHHHHHHHHHhcCCC-----------ccccHHHHHHHHHHHhhhch-
Confidence 89988777766554 4444444331 11 11223444455444431 22346666666655433211
Q ss_pred CCCCCCCCCCHHHHHHHHhccCCC
Q 010888 454 DELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 454 ~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
....+++..++.....+
T Consensus 251 -------~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 251 -------EYRVRKFLALLREEGAS 267 (272)
T ss_dssp -------GGHHHHHHHHHHHTSCC
T ss_pred -------HHHHHHHHHHHHHcCCc
Confidence 14566677766665544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-19 Score=194.65 Aligned_cols=231 Identities=18% Similarity=0.143 Sum_probs=148.5
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-------
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------- 289 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~------- 289 (498)
+++++|++++++.+.+.+.......+ .++.+++|+||||||||++|+++|..++.++..++++.+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 56799999999999877654322111 15678999999999999999999999999999999876543
Q ss_pred --hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc------------CCC
Q 010888 290 --KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------------SDE 355 (498)
Q Consensus 290 --~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------------~~~ 355 (498)
.+.|.....+...|..+....| ||||||+|.+.++++. ..++.|+..++.... ...
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 4555555566666766655554 9999999999765431 134556666653221 114
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcC-----CCCCC---C---CCCHHHHHHHhcC-CcHH
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE---E---SLPYDLLVERTEG-YSGS 423 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~---~---~~~l~~La~~t~g-~s~~ 423 (498)
++++|+|||.++.+++++++||. .+.++.|+.+++..|++.++. ..... . +..+..++....+ ...+
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred ceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 58899999999999999999994 789999999999999998762 11221 1 1223444543332 4456
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 424 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 424 dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
+|+..+..+...+..+... . . .....|+.+|+.+++...+.
T Consensus 303 ~L~~~i~~~~~~aa~~~~~---~------~---~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 303 SLERQLAAICRKAAKAIVA---E------E---RKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHT---T------C---CSCCEECTTTTHHHHCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHh---c------C---CcceecCHHHHHHHhCCccc
Confidence 6666555554444333221 0 0 11123899999999976543
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-18 Score=169.74 Aligned_cols=194 Identities=19% Similarity=0.168 Sum_probs=137.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
..+.+|++++|.+..++.+.+.+..... ...++.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 4566899999999999999987754321 1234578999999999999999999999999999999877632
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc---------------cCCCc
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDEL 356 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~ 356 (498)
...+...+.. ....+++|||||+|.+... .+..++..++... ....+
T Consensus 77 ----~~~l~~~l~~-~~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ----PGDLAAILAN-SLEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ----HHHHHHHHTT-TCCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ----hHHHHHHHHH-hccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 2222222221 1245789999999988533 2334444544221 01124
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
+.+|++||.+..+++++.+||...+.+++|+.+++..+++.++.......+ ..++.++..+.| +++++..+++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 789999999999999999999888999999999999999988765543322 234556666544 4456666555543
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=177.44 Aligned_cols=179 Identities=22% Similarity=0.328 Sum_probs=128.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh---ccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-cccC
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~---~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-~~G~ 294 (498)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+++.++++++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998885433222111 1123466899999999999999999999999999999999988743 6665
Q ss_pred c-HHHHHHHHHHH----HhcCCeEEEEcCccchhhhccccchhhH-HHHHHHHHHHHHhhCCc-----------------
Q 010888 295 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT----------------- 351 (498)
Q Consensus 295 ~-~~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~~----------------- 351 (498)
. ...+..++..+ ....++||||||+|.+.+.+........ ..+.+++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 44556666554 3345689999999999887654332222 23458899999998431
Q ss_pred -cCCCcEEEEEEeCCC----------CC-----------------------------------CCHHHHhcccceeEecC
Q 010888 352 -QSDELVFVLAATNLP----------WE-----------------------------------LDAAMLRRLEKRILVPL 385 (498)
Q Consensus 352 -~~~~~viVIaaTn~p----------~~-----------------------------------Ld~al~~Rf~~~i~~~~ 385 (498)
-...++++|+++|.. .. +.+++.+||+..+.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 012234555565532 11 78999999999999999
Q ss_pred CCHHHHHHHHHH
Q 010888 386 PDTEARRAMFES 397 (498)
Q Consensus 386 Pd~~eR~~IL~~ 397 (498)
|+.+++..|+..
T Consensus 256 l~~~~~~~I~~~ 267 (363)
T 3hws_A 256 LSEEALIQILKE 267 (363)
T ss_dssp CCHHHHHHHHHS
T ss_pred CCHHHHHHHHHH
Confidence 999999999986
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-18 Score=177.76 Aligned_cols=220 Identities=22% Similarity=0.267 Sum_probs=149.1
Q ss_pred CCCCCCccccCcHHHH---HHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k---~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
..+.+|++++|++.++ +.|...+... ...++||+||||||||++|+++++.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 4567899999999999 6777766431 12689999999999999999999999999999987543
Q ss_pred hhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-
Q 010888 289 SKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT- 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT- 363 (498)
..+.++.++..+. ...++||||||+|.+... .++.|+..++. . .+++|++|
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~-~v~lI~att 142 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----G-TITFIGATT 142 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----T-SCEEEEEES
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----C-ceEEEecCC
Confidence 2334455555444 345799999999998543 23446666663 2 24555555
Q ss_pred -CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 364 -NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 364 -n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
|....+++++++|+. .+.++.|+.++...+++..+........ .....++...+..+++. +.+.+|++.+
T Consensus 143 ~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~-------~~~~~i~~~al~~L~~~-~~Gd~R~lln 213 (447)
T 3pvs_A 143 ENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG-------GQDIVLPDETRRAIAEL-VNGDARRALN 213 (447)
T ss_dssp SCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSST-------TSSEECCHHHHHHHHHH-HCSCHHHHHH
T ss_pred CCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc-------cccCcCCHHHHHHHHHH-CCCCHHHHHH
Confidence 444579999999995 6889999999999999998765321100 00011455555555555 6677777777
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 478 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~ 478 (498)
.++.....+.... .....||.+++.+++....+..
T Consensus 214 ~Le~a~~~a~~~~-~~~~~It~e~v~~~l~~~~~~~ 248 (447)
T 3pvs_A 214 TLEMMADMAEVDD-SGKRVLKPELLTEIAGERSARF 248 (447)
T ss_dssp HHHHHHHHSCBCT-TSCEECCHHHHHHHHTCCCCC-
T ss_pred HHHHHHHhccccc-CCCCccCHHHHHHHHhhhhhcc
Confidence 7776655443110 0113499999999998776544
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-17 Score=150.93 Aligned_cols=202 Identities=18% Similarity=0.189 Sum_probs=136.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~ 286 (498)
.++..|++++|.++.++.+.+.+... ...+++|+||||||||++++++++++ ...++.++++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 45678999999999999999887431 22359999999999999999999986 45688888765
Q ss_pred cchhcccCcHHHHHHHHHHHH------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 287 VVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
..+ ...+...+.... ...+.+|+|||+|.+... ..+.++..++. ....+.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~---~~~~~~~i 136 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFI 136 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHh---cCCCCeEE
Confidence 432 122222222221 245789999999988532 23445555543 23346788
Q ss_pred EEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 361 aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
++||.+..+++++.+||. .+.+++|+.++...+++.++.......+ ..+..++..+ .++.++
T Consensus 137 ~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----------------~g~~r~ 199 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS----------------GGDFRK 199 (226)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH----------------TTCHHH
T ss_pred EEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------CCCHHH
Confidence 899999999999999996 7999999999999999987754332211 1233344333 333444
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
+.+.++...... ..|+.+|+++++.
T Consensus 200 l~~~l~~~~~~~--------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 200 AINALQGAAAIG--------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTC--------SCBCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------ceecHHHHHHHhc
Confidence 444333332211 2499999999886
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=171.48 Aligned_cols=223 Identities=16% Similarity=0.235 Sum_probs=145.9
Q ss_pred CCCCCCCcccc-Cc--HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEE
Q 010888 211 GSPDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 282 (498)
Q Consensus 211 ~~~~~~~~~Iv-G~--~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v 282 (498)
-.+..+|++++ |. ..+...+......+ .. ..+++|+||||||||++|+++++++ +.+++++
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 34667899988 53 33444444443221 11 4689999999999999999999988 8889999
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
++.++...+.+.........|.......+.+|||||++.+.... ..+..++..++..... +..+|+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~-~~~iIitt 234 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDS-GKQIVICS 234 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 99877554432221111112333323367999999999986431 1233444444433222 23445555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQP 436 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a 436 (498)
.+.+.. +++++++||. ..+.+++|+.++|..+++..+....... +..+..++..+.| +.+++..+++.+...+
T Consensus 235 ~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp SSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 555544 8899999996 6789999999999999999876544432 3336667777664 7778877777665543
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 437 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 437 ~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
.. . ..+|+.+++.++++...+
T Consensus 314 ~~------~-------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 314 ET------T-------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HH------S-------------SSCCCHHHHHHHTSTTTC
T ss_pred HH------h-------------CCCCCHHHHHHHHHHHhh
Confidence 21 0 123889999998887764
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=167.92 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=117.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
..++.+|++++|++.+++.+.+.+.. ...++.+|++||||||||++|++++++++.+++++++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 35678899999999999999988752 23346788899999999999999999999999999987642
Q ss_pred cccCcHHHHHHHHHHHHhc-----CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 291 WRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~-----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
...++..+...... .+.||+|||+|.+.+ ....+.|+..++.. ...+.+|++||.
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~---~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY---SSNCSIIITANN 145 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH---GGGCEEEEEESS
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC---CCCcEEEEEeCC
Confidence 23344434333222 568999999999851 11344566666532 234678889999
Q ss_pred CCCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 366 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 366 p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
+..+++++++||. .+.++.|+.+++..|++.++
T Consensus 146 ~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 146 IDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp GGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 9999999999994 69999999999877766553
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=163.14 Aligned_cols=198 Identities=22% Similarity=0.235 Sum_probs=131.1
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 212 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 212 ~~~~~~~~Iv-G--~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.+..+|++++ | ...+...+...+..+ ...+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4678899997 4 445556666554332 1234689999999999999999999998 8999999998
Q ss_pred ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 286 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
++...+.+.........|.... ..+++|||||++.+..+. ..+..++..++.....+ ..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~~~~~-~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTLYLLE-KQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-----------HHHHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 8765544332221112222222 247899999999986431 12233334433222222 3566666666
Q ss_pred CC---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 010888 366 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 366 p~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~ 435 (498)
+. .+++++.+||. ..+.+++ +.+++..+++..+.......+ ..++.++..+ .+.+++..++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 65 68999999996 5678888 999999999998865544322 2356677777 4566777666655443
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=166.03 Aligned_cols=177 Identities=24% Similarity=0.341 Sum_probs=132.2
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
++|+|++++|+.+...+..+.+++..+... ..+++++||+||||||||++|+++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 478999999999999887766555544433 235688999999999999999999999999999999988877 47774
Q ss_pred -cHHHHHHHHHHHH------------------------------------------------------------------
Q 010888 295 -SEKLIKVLFELAR------------------------------------------------------------------ 307 (498)
Q Consensus 295 -~~~~l~~~f~~a~------------------------------------------------------------------ 307 (498)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 5666655554330
Q ss_pred ------------------------------------------------------------------------h-cCCeEE
Q 010888 308 ------------------------------------------------------------------------H-HAPSTI 314 (498)
Q Consensus 308 ------------------------------------------------------------------------~-~~p~VL 314 (498)
. ...++|
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0 023589
Q ss_pred EEcCccchhhhccccchhhHHH-HHHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhcccceeE
Q 010888 315 FLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRIL 382 (498)
Q Consensus 315 ~IDEiD~l~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~~~i~ 382 (498)
++||+|++...... ...+.+ ..++..||..+++... ...+|++|+|. +.|.++.|++++||...+.
T Consensus 255 ~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~ 332 (444)
T 1g41_A 255 FIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 332 (444)
T ss_dssp EEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred eHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence 99999999865331 122333 3477889999997421 34568888887 3455577999999999999
Q ss_pred ecCCCHHHHHHHHH
Q 010888 383 VPLPDTEARRAMFE 396 (498)
Q Consensus 383 ~~~Pd~~eR~~IL~ 396 (498)
++.++.++...|+.
T Consensus 333 l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 333 LTALSAADFERILT 346 (444)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999995
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=159.71 Aligned_cols=226 Identities=20% Similarity=0.181 Sum_probs=149.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEe
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNIS 283 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~ 283 (498)
+....++++|.+..++.+.+.+...+. ...+.+++|+||||||||++++++++++ +.++++++
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 445568999999999999987643221 2345789999999999999999999988 88899999
Q ss_pred ccccchh----------------cccCcH-HHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 284 ASSVVSK----------------WRGDSE-KLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 284 ~s~l~~~----------------~~G~~~-~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
|...... ..|... .....++..... ..|.+|+|||+|.+...+ .....+..++.
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~ 157 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITR 157 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhh
Confidence 8754321 112222 234444444433 347899999999986432 01233344444
Q ss_pred HhhCCccCCCcEEEEEEeCCC---CCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCC--CCCC-CCCCHHHHHHHhc
Q 010888 346 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTE 418 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~--~~~~-~~~~l~~La~~t~ 418 (498)
.++.... ..++.+|++||.+ ..+++++.+||.. .+.+++|+.++...+++..+.. .... .+..++.+++.+.
T Consensus 158 ~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 158 INQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred chhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 4432210 3457788899887 6789999999975 7999999999999999988753 1122 2334566677666
Q ss_pred ---CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 419 ---GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 419 ---g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
| .++.+..+++.++..+..+ + ...|+.+|+..++...
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERR------R------------EERVRREHVYSARAEI 276 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHT------T------------CSCBCHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHH
Confidence 4 4556666777665543221 0 0237888888877665
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=153.19 Aligned_cols=160 Identities=21% Similarity=0.337 Sum_probs=115.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI 282 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v 282 (498)
++..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 456799999999999998887632 234689999999999999999999986 7889999
Q ss_pred eccccc--hhcccCcHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 283 SASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 283 ~~s~l~--~~~~G~~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
++..+. ..+.+.....+..++..+. ...+.||+|||+|.+......... ..+.+.+...++ ...+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~-----~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-----MDAGNMLKPALA-----RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-----CCCHHHHHHHHH-----TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch-----HHHHHHHHHhhc-----cCCeEE
Confidence 987765 2344555566677776553 355789999999999754321100 111222333332 123567
Q ss_pred EEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHH
Q 010888 360 LAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 360 IaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL 395 (498)
|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888775 68999999997 6999999999998765
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=150.42 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=135.4
Q ss_pred CCCCCccccCc---HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 213 PDVKWESIKGL---ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 213 ~~~~~~~IvG~---~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
+..+|++++|. +.+.+.+...+.. ....+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45789999972 4666666665432 234789999999999999999999987 47889999887
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+........ . ....+.+|+|||+|.+.... .....++..++.........+|++++..+
T Consensus 91 ~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTALL--------E--GLEQFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGGG--------T--TGGGSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHHH--------H--hccCCCEEEEeccccccCCH-----------HHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 765432111 1 11346899999999885431 11233444433322222222444444444
Q ss_pred C---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 010888 367 W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 367 ~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl 440 (498)
. .+++++.+||. ..+.++.|+.+++.++++.++.......+ ..++.+++.+.| +.+++..+++.+...+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~- 227 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH- 227 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 45689999986 78999999999999999998865444322 234556666654 6667777666665543221
Q ss_pred HHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 441 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 441 ~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
...|+.+|++++++
T Consensus 228 ------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ------------------TCCCCHHHHHHHHT
T ss_pred ------------------CCCCcHHHHHHHhh
Confidence 12399999999885
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=161.91 Aligned_cols=207 Identities=22% Similarity=0.259 Sum_probs=137.7
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc---
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 291 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~--- 291 (498)
++++|++.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 368899999999998876532110 1112344689999999999999999999998 5679999998764321
Q ss_pred --ccCcH-----HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc--------CCCc
Q 010888 292 --RGDSE-----KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDEL 356 (498)
Q Consensus 292 --~G~~~-----~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~ 356 (498)
.|... .....+........++||||||+|.+.+ .+++.|+..++.... .-.+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 11000 0001223333444568999999998843 355667777764321 1135
Q ss_pred EEEEEEeCC--------------------------CCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC-------
Q 010888 357 VFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT------- 403 (498)
Q Consensus 357 viVIaaTn~--------------------------p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~------- 403 (498)
+++|+|||. ...+++++.+||+..+.+++|+.+++..|++.++....
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 779999998 34688999999999999999999999999998875421
Q ss_pred CC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHH
Q 010888 404 GE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 404 ~~---~~~~l~~La~~t~--g~s~~dL~~L~~~A~~~a~rrl 440 (498)
.. .+..++.+++..- ..+.++|+.+++.+...++.+.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 11 1122344554433 4566777777777666655543
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-17 Score=165.70 Aligned_cols=179 Identities=21% Similarity=0.327 Sum_probs=116.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchh------------------hccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.|+|++.+++.|...+......... ......++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999887433222211 1122345678999999999999999999999999999
Q ss_pred EEeccccc-hhcccCc-HHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhH-HHHHHHHHHHHHhhCCc--
Q 010888 281 NISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT-- 351 (498)
Q Consensus 281 ~v~~s~l~-~~~~G~~-~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~~-- 351 (498)
.+++..+. ..+.|.. ...+...+..+. ...++||||||+|.+...+.......+ ....+++.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444432 344455544322 235789999999999876432111111 11236788888888531
Q ss_pred ----------------cCCCcEEEEEEeCC-----------------------------------------CCCCCHHHH
Q 010888 352 ----------------QSDELVFVLAATNL-----------------------------------------PWELDAAML 374 (498)
Q Consensus 352 ----------------~~~~~viVIaaTn~-----------------------------------------p~~Ld~al~ 374 (498)
....++++|+++|. ...+.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01134567777762 113578889
Q ss_pred hcccceeEecCCCHHHHHHHHHH
Q 010888 375 RRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 375 ~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
+||+..+.|++++.++...|+..
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCCceeeccCCCHHHHHHHHhh
Confidence 99988899999999999988874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=149.27 Aligned_cols=204 Identities=22% Similarity=0.252 Sum_probs=140.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------------
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 278 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------- 278 (498)
..+..|++++|.+..++.+.+.+.. ...+..++|+||||||||+++++++++++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 4567799999999999999988743 1233579999999999999999999987432
Q ss_pred -----------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHH
Q 010888 279 -----------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 343 (498)
Q Consensus 279 -----------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~L 343 (498)
++.++... ......++.++..+. ...+.+|+|||+|.+.. ...+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~~l 146 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNAL 146 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-------------HHHHHH
Confidence 22222211 112233444444432 23478999999998732 234556
Q ss_pred HHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcH
Q 010888 344 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSG 422 (498)
Q Consensus 344 l~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~ 422 (498)
+..++.. ...+.+|++||.+..+++.+.+|+ ..+.+++|+.++..++++.++....... +..++.+++.+.| ++
T Consensus 147 ~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 147 LKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 6666532 345778889998888999999997 6789999999999999998876543332 2235667777766 66
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 423 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
+.+..+++.+... . . ..|+.+|+++++.
T Consensus 222 ~~~~~~~~~~~~~---------------~--~-----~~i~~~~v~~~~~ 249 (250)
T 1njg_A 222 RDALSLTDQAIAS---------------G--D-----GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHHTT---------------T--T-----SSBCHHHHHHHSC
T ss_pred HHHHHHHHHHHhc---------------c--C-----ceecHHHHHHHhC
Confidence 7777766655321 0 0 1399999998864
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-17 Score=162.18 Aligned_cols=198 Identities=20% Similarity=0.186 Sum_probs=124.3
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccchhc
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 291 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~~~~ 291 (498)
.+|++++|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 578999999999998887765422 2346899999999999999999999884 789999998764321
Q ss_pred -----ccCcHHH-------HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------
Q 010888 292 -----RGDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------- 351 (498)
Q Consensus 292 -----~G~~~~~-------l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------- 351 (498)
.|..... ....+.. ..+++|||||+|.+... .+..|+..++...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 1111000 0112222 23579999999988543 3445566655211
Q ss_pred cCCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHH----HHHHHhcCCCCCCCCCCHHHHHHHh---
Q 010888 352 QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERT--- 417 (498)
Q Consensus 352 ~~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~----~IL~~~l~~~~~~~~~~l~~La~~t--- 417 (498)
....++.+|+|||.+ ..+.+++.+||.. +.+.+|+..+|. .++++++.. +++..
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~-----------~~~~~~~~ 204 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQ-----------MCREIKLP 204 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHH-----------HHHHTTCS
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHH-----------HHHHhCCC
Confidence 112346788999885 2478899999954 566666665543 333333321 12111
Q ss_pred --cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhcc
Q 010888 418 --EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 450 (498)
Q Consensus 418 --~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~ 450 (498)
..++...+..+....|.+++|++.+.++.....
T Consensus 205 ~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 205 LFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp SCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 246777888888888899999888887766543
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-16 Score=158.67 Aligned_cols=214 Identities=20% Similarity=0.191 Sum_probs=139.2
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCeEEEEecc
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS 285 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----------~~~~i~v~~s 285 (498)
.++++|.++.++.+.+.+..... ...+++++|+||||||||++|+++++++ +.+++.++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 47899999999999987754332 2344689999999999999999999988 8999999987
Q ss_pred ccc-hh----------c-------ccC-cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHH-HHHHHH
Q 010888 286 SVV-SK----------W-------RGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI 345 (498)
Q Consensus 286 ~l~-~~----------~-------~G~-~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-~~~Ll~ 345 (498)
... .. . .+. ....+..++..+.... .+|+|||+|.+..... ... +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~---------~~~~l~~l~- 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG---------GDIVLYQLL- 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT---------SHHHHHHHH-
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC---------CceeHHHHh-
Confidence 543 10 0 111 1233444454444444 3999999999864321 011 22222
Q ss_pred HhhCCccCCCcEEEEEEeCCC---CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC--CC-CCCCHHHHHHHhcC
Q 010888 346 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT--GE-ESLPYDLLVERTEG 419 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~--~~-~~~~l~~La~~t~g 419 (498)
+.. .++.+|++||.+ ..+++++.+||...+.+++|+.++...+++.++.... .. .+..++.+++.+.+
T Consensus 160 --~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 160 --RSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp --TSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred --cCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 211 457888899887 6789999999977999999999999999998875211 11 12224445555441
Q ss_pred --CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 420 --YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 420 --~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
-+.+.+..+++.++.. +.. ...|+.+|+..++....
T Consensus 234 ~~G~~r~a~~~l~~a~~~---------------a~~-----~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQL---------------ASG-----GGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHH---------------TTS-----SSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH---------------hcC-----CCccCHHHHHHHHHHHh
Confidence 1222333333333321 111 12388999988887754
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=166.57 Aligned_cols=208 Identities=20% Similarity=0.278 Sum_probs=139.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc---
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 291 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~--- 291 (498)
++++|.+..++.+.+.+... ...+.+|||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46899999999998877542 2345789999999999999999999976 6799999998764321
Q ss_pred --cc----CcHH---HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCC
Q 010888 292 --RG----DSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 354 (498)
Q Consensus 292 --~G----~~~~---~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 354 (498)
.| .... .....+..+. +++|||||+|.+... .+..|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 11 1110 1123344443 479999999998543 4455666666432 112
Q ss_pred CcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH----hcC
Q 010888 355 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER----TEG 419 (498)
Q Consensus 355 ~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~----t~g 419 (498)
.++.||++||.+ ..+.+.+..||. .+.+.+|+..+|.+ ++++++.. ++.. ...
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~-----------~~~~~~~~~~~ 203 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRR-----------FAERNRKVVKG 203 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHH-----------HHHHTTCCCCC
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHH-----------HHHHhccCccC
Confidence 357889999986 236778888885 56666776665543 44444321 1121 135
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHH
Q 010888 420 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 469 (498)
Q Consensus 420 ~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~ 469 (498)
++...+..+.++.|++++|++.+.++......... .|+.+|+..
T Consensus 204 ~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~~------~i~~~~l~~ 247 (304)
T 1ojl_A 204 FTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGE------YISERELPL 247 (304)
T ss_dssp BCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCSS------SBCGGGSCG
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCC------cccHHhhhh
Confidence 78888888999999999999999888776554432 255565543
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=168.12 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=129.9
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 275 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------- 275 (498)
.++.....+.++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 168 ~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 168 RDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp CBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred HHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 3344445567899999999999999887643 234689999999999999999999997
Q ss_pred CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 276 ~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+.+++.++++ +.+.|..+..++.++..+....++||||| .. ....+.|+..++ .+
T Consensus 236 ~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~-----~g 290 (468)
T 3pxg_A 236 DKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----RG 290 (468)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----SS
T ss_pred CCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc-----CC
Confidence 7889999887 67778777888999999998889999999 10 112223333332 23
Q ss_pred cEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-----CCCHHHHHHHhcCCc----
Q 010888 356 LVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERTEGYS---- 421 (498)
Q Consensus 356 ~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-----~~~l~~La~~t~g~s---- 421 (498)
.+.+|++||.+. .+++++++||. .+.++.|+.+++..||+.++....... +..+..++..+.+|.
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCc
Confidence 478899999886 68999999996 599999999999999999886632221 222445555544433
Q ss_pred -HHHHHHHHHHHH
Q 010888 422 -GSDIRLVSKEAA 433 (498)
Q Consensus 422 -~~dL~~L~~~A~ 433 (498)
+.....+++.|.
T Consensus 370 lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 370 LPDKAIDLIDEAG 382 (468)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 345555665554
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=156.27 Aligned_cols=234 Identities=17% Similarity=0.205 Sum_probs=134.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------e-----
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------T----- 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-------~----- 278 (498)
..++.+|++++|.+++++.+...... ....++||+||||||||++|+++++.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhC------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 34678899999999988776544322 12246999999999999999999999863 1
Q ss_pred ---------------------EEEEeccccchhcccCcHHHHHHHHHHH---------HhcCCeEEEEcCccchhhhccc
Q 010888 279 ---------------------FFNISASSVVSKWRGDSEKLIKVLFELA---------RHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 279 ---------------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a---------~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
++.+..........|... +...+... ....+++|||||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH---
Confidence 222111111111111100 01111111 1113689999999988543
Q ss_pred cchhhHHHHHHHHHHHHHhhC----Ccc------CCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCC-CHHHHHHHHH
Q 010888 329 ARSEHEASRRLKTELLIQMDG----LTQ------SDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFE 396 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~ld~----~~~------~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~ 396 (498)
.++.|+..++. +.. ...++++|+|||... .+++++++||...+.++.| +.+++..|++
T Consensus 160 ----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 160 ----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 34455555542 111 112588999999744 7999999999888999998 6777888887
Q ss_pred HhcCCCCCCC------CCC----HHHHH---HHh--cCCcHHHHHHHHHHHHhHH---HHHHHHHhhchhccCCCCCCCC
Q 010888 397 SLLPSQTGEE------SLP----YDLLV---ERT--EGYSGSDIRLVSKEAAMQP---LRRLMVLLEGRQEVAPDDELPQ 458 (498)
Q Consensus 397 ~~l~~~~~~~------~~~----l~~La---~~t--~g~s~~dL~~L~~~A~~~a---~rrl~~~le~~~~~~~~~~~~~ 458 (498)
..+....... ... ...+. ... -.++...+..+++.++... .|++.+.++.+...+.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~-- 307 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA-- 307 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC--
Confidence 7532110000 000 00110 001 1356666666666666522 35555555443322211111
Q ss_pred CCCCCHHHHHHHHhcc
Q 010888 459 IGPIRPEDVEIALKNT 474 (498)
Q Consensus 459 ~~~It~eD~~~AL~~~ 474 (498)
..|+.+|+..++..+
T Consensus 308 -~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 308 -TAVGRDHLKRVATMA 322 (350)
T ss_dssp -SBCCHHHHHHHHHHH
T ss_pred -CcCCHHHHHHHHHHH
Confidence 128999999998764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=153.53 Aligned_cols=212 Identities=15% Similarity=0.135 Sum_probs=139.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------CeEEEEec
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------TTFFNISA 284 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~------~~~i~v~~ 284 (498)
..++.+|++++|++++++.+...+.. ....++||+||||||||++|+++++.++ ..++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 35677899999999999999887632 1123499999999999999999999864 46888888
Q ss_pred cccchhcccCcHHHHHHHHHHHH----------------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 285 SSVVSKWRGDSEKLIKVLFELAR----------------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~----------------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
++..+ ...++..+.... ...+.||+|||+|.+.+. ..+.|+..++
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll~~le 158 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTME 158 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHH
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHHHHHH
Confidence 76421 111222111111 124569999999988542 3355666665
Q ss_pred CCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHH
Q 010888 349 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRL 427 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~ 427 (498)
... ....+|.+||.+..+.+++++|+. .+.+++|+.++...+++..+....... +..++.+++.+.|. .+.+.+
T Consensus 159 ~~~---~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~ 233 (353)
T 1sxj_D 159 TYS---GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGIT 233 (353)
T ss_dssp HTT---TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHH
T ss_pred hcC---CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 332 235567788999999999999995 789999999999999998875544332 22355666666653 334444
Q ss_pred HHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 428 VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 428 L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+++.++..+-+. . ....|+.+|+..++....
T Consensus 234 ~l~~~~~~~~~~------~-----------~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 234 LLQSASKGAQYL------G-----------DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHTHHHHHHH------C-----------SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCC------c-----------cCccccHHHHHHHhCCCC
Confidence 444433321110 0 001388888888777443
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=155.14 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=117.6
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~ 284 (498)
...++.+|++++|++.+++.+.+.+.. ....++||+||||||||++|+++++++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 345678899999999999988876532 112349999999999999999999987 346788888
Q ss_pred cccchhcccCcHHHHHHHHHHH--HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 285 SSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
++..+. ......+....... ....+.||+|||+|.+... ..+.|+..++. ....+.+|++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i~~ 138 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFILS 138 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEEEEE
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeEEEE
Confidence 765321 11222222221110 0144789999999988532 33445555543 3345778889
Q ss_pred eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC
Q 010888 363 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 404 (498)
Q Consensus 363 Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 404 (498)
||.+..+.+++.+|+. .+.+++|+.++...+++..+.....
T Consensus 139 ~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~ 179 (319)
T 2chq_A 139 CNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV 179 (319)
T ss_dssp ESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCC
T ss_pred eCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999995 7999999999999999988765544
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=153.90 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=109.5
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc------cc
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VV 288 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~------l~ 288 (498)
..+++++|++++++.+...+.. ..++||+||||||||++|+++++.++.+++.+++.. +.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3457899999999988876532 258999999999999999999999999999998741 11
Q ss_pred hhcccCcHHHHHHHHHHHHhcC---CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcE
Q 010888 289 SKWRGDSEKLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 357 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~---p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~v 357 (498)
+...-... ...+. .... .+||||||+|.+.+. .++.|+..++... ....++
T Consensus 90 g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 90 GTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp EEEEEETT---TTEEE--EEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred CceeecCC---CCceE--eccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 11110000 00000 0011 279999999987432 4455565555321 123357
Q ss_pred EEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC
Q 010888 358 FVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 358 iVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
++|+|+|... .+++++++||...+.++.|+.+++.+|++..+...
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 7888888543 38999999998789999999999999999887653
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=173.38 Aligned_cols=226 Identities=23% Similarity=0.290 Sum_probs=155.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 283 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~ 283 (498)
+.+|++++|.++.++.+.+.+.. ....++||+||||||||++|+++++.+ +..++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 45799999999999998887632 245789999999999999999999987 67788888
Q ss_pred ccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 284 ASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 284 ~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
++.+. ..+.|..+..++.++..+....++||||||+|.+.+........ ....+ .+..+... ..+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~----~~~~~----~L~~~l~~-~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAAN----LIKPLLSS-GKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH----HHHHH----HHSSCSSS-CCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch----HHHHH----HHHHHHhC-CCeEEEE
Confidence 87776 46788899999999999988788999999999998764432111 11222 22222222 3467788
Q ss_pred EeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC----CCC-CCCCHHHHHHHhcC-----CcHHHHH
Q 010888 362 ATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----TGE-ESLPYDLLVERTEG-----YSGSDIR 426 (498)
Q Consensus 362 aTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~----~~~-~~~~l~~La~~t~g-----~s~~dL~ 426 (498)
+||.+ ..+++++.+||. .+.++.|+.+++..|++.++... ... .+..+..++..+.+ +.+..+.
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 88764 357889999997 69999999999999999876431 111 12224445554433 4555666
Q ss_pred HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 427 LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 427 ~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
.++.+|.... ++ . +. ......++.+|+..++....
T Consensus 400 ~lld~a~~~~--~~----~------~~--~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARA--RL----M------PV--SKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHH--HH----S------SS--CCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHH--hc----c------cc--cccCCccCHHHHHHHHHHhc
Confidence 6666654321 11 0 00 01113489999999998753
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=166.72 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=123.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccC-chhhccC----CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~-~~~~~~~----~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
..++.+|++|+|.+.+++.+.+++...... +..+... ..+.+++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 456779999999999999999988653211 1112111 12457999999999999999999999999999999998
Q ss_pred ccchhcccCcH-------HHHHHHHHHH-----HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC
Q 010888 286 SVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 353 (498)
Q Consensus 286 ~l~~~~~G~~~-------~~l~~~f~~a-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 353 (498)
++......... ..+..+|..+ ....+.||||||+|.+....+. ....++..++. .
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~----------~l~~L~~~l~~---~ 178 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCRK---T 178 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHHH---C
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH----------HHHHHHHHHHh---c
Confidence 77543211000 0011222222 2245789999999999754221 23344444442 2
Q ss_pred CCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcC
Q 010888 354 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEG 419 (498)
Q Consensus 354 ~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g 419 (498)
..++++++++.....+. .+.+|+ ..+.|+.|+.+++..+++..+...... .+..+..+++.+.|
T Consensus 179 ~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 179 STPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp SSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 23344444433333444 344454 679999999999999998876544433 23346667776654
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-16 Score=173.18 Aligned_cols=202 Identities=17% Similarity=0.194 Sum_probs=138.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 294 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~ 294 (498)
++++|++.+++.+.+.+....... .....|..++||+||||||||++|+++|+.+ +.+++.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 568999999999998876532110 1112333479999999999999999999998 7899999999998776544
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCC
Q 010888 295 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 366 (498)
Q Consensus 295 ~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p 366 (498)
...+....+...++||||||+|.+.+ .+++.|+..++.-. ....++++|+|||.+
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP-------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH-------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH-------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12233344556678999999998743 36677777776421 123457899999976
Q ss_pred CC------------CCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-------CCC---CCCCHHHHHHH--hcCCcH
Q 010888 367 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE---ESLPYDLLVER--TEGYSG 422 (498)
Q Consensus 367 ~~------------Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~---~~~~l~~La~~--t~g~s~ 422 (498)
.. +.|++++||+..+.|++|+.+++..|++..+... ... .+..++.|++. ...+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 54 7899999999899999999999999998876432 111 11123334432 123456
Q ss_pred HHHHHHHHHHHhHHHHH
Q 010888 423 SDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~rr 439 (498)
++|+.+++++....+.+
T Consensus 711 R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp TTHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 67777777666655544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-15 Score=151.73 Aligned_cols=224 Identities=18% Similarity=0.176 Sum_probs=144.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCeEEEEeccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASS 286 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------~~~~i~v~~s~ 286 (498)
+....++++|.+..++.+.+.+...+. ...+..++|+||||||||++++++++.+ +.+++++++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 455668999999999999887643221 2345689999999999999999999988 88999999764
Q ss_pred cch------h----------cccC-cHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 287 VVS------K----------WRGD-SEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 287 l~~------~----------~~G~-~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
... . ..+. .......++....... |.+|+|||++.+..... ......++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchh
Confidence 321 0 1122 2233444554444433 89999999999865421 123455666665
Q ss_pred CCccCCCcEEEEEEeCCC---CCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCCCC--C-CCCCHHHHHHHhc---
Q 010888 349 GLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTG--E-ESLPYDLLVERTE--- 418 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~~~--~-~~~~l~~La~~t~--- 418 (498)
.. ...++.+|++|+.+ ..+++.+.+||.. .+.+++++.++..++++..+..... . .+..+..++..+.
T Consensus 158 ~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 158 EV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp SC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred hc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 43 33457788888876 4578889999863 7999999999999999987643211 1 1122344555554
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 419 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 419 g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
| +++.+..+++.++..+..+ + ...|+.+|+..++...
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERM------K------------DTKVKEEYVYMAKEEI 272 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhc------C------------CCccCHHHHHHHHHHH
Confidence 4 3444555666655433211 0 0127777777766554
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=141.95 Aligned_cols=152 Identities=24% Similarity=0.365 Sum_probs=108.9
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 283 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~ 283 (498)
+..|++++|.+...+.+.+.+.. ....+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 56789999999998888887632 234689999999999999999999987 78899998
Q ss_pred ccccch--hcccCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 284 ASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 284 ~s~l~~--~~~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
+..+.. .+.+.....+..++..+... .|.+|+|||+|.+.+.+....... .+.+.+...++ ...+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~----~~~~~l~~~~~-----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL----DAGNILKPMLA-----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC----CTHHHHHHHHH-----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch----HHHHHHHHHHh-----cCCeeEE
Confidence 876653 23444555667777666554 678999999999975433111111 12233333333 1336688
Q ss_pred EEeCCCC-----CCCHHHHhcccceeEecCCC
Q 010888 361 AATNLPW-----ELDAAMLRRLEKRILVPLPD 387 (498)
Q Consensus 361 aaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd 387 (498)
++||.+. .+++++++||.. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888764 689999999974 8888885
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=172.54 Aligned_cols=191 Identities=20% Similarity=0.282 Sum_probs=131.3
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 275 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------- 275 (498)
.++.....+.++++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 168 ~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~ 235 (758)
T 3pxi_A 168 RDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (758)
T ss_dssp CBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred HHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3333445567899999999999999987643 234689999999999999999999997
Q ss_pred CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 276 ~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+.+++.+++ ..++.|..+..++.++..+....|+||||| .. ....+.|+..++ ..
T Consensus 236 ~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~-----~~ 290 (758)
T 3pxi_A 236 DKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----RG 290 (758)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----SS
T ss_pred CCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh-----cC
Confidence 788888887 556788888899999999998889999999 00 112233333332 33
Q ss_pred cEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-----HHHHHHHh-----cCC
Q 010888 356 LVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERT-----EGY 420 (498)
Q Consensus 356 ~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-----l~~La~~t-----~g~ 420 (498)
.+.+|++||... .+++++++|| ..+.++.|+.+++..||+.++.......... +..++..+ .++
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~ 369 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred CEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence 477899998887 6999999999 5699999999999999998876643222222 34444443 245
Q ss_pred cHHHHHHHHHHHHh
Q 010888 421 SGSDIRLVSKEAAM 434 (498)
Q Consensus 421 s~~dL~~L~~~A~~ 434 (498)
.+.....++..|..
T Consensus 370 ~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 370 LPDKAIDLIDEAGS 383 (758)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 55666666665543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=147.48 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=147.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCc--eEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 286 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~--~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~ 286 (498)
+....++++|.+..++.+.+.+..... ...+. +++|+||||||||++++++++.+ +.++++++|..
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 445568999999999999988754322 12234 89999999999999999999998 57899999765
Q ss_pred cchh----------------cccCc-HHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 287 VVSK----------------WRGDS-EKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 287 l~~~----------------~~G~~-~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
.... ..+.. ......+..... ...|.||+|||+|.+. ...+..|+..++
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQ 150 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHH
Confidence 4311 01111 222222322222 2457899999999882 234556666665
Q ss_pred CCcc-CCCcEEEEEEeCCC---CCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHhc--
Q 010888 349 GLTQ-SDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERTE-- 418 (498)
Q Consensus 349 ~~~~-~~~~viVIaaTn~p---~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~~---~~~~~~l~~La~~t~-- 418 (498)
.... ...++.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+.... ...+..++.+++.+.
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 4322 11357788889887 6688999999875 799999999999999988875311 112223555677773
Q ss_pred ------CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 419 ------GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 419 ------g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+-.++.+..+++.++..+.++ . ...++.+|+..++.....+
T Consensus 231 ~~~~~~~G~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 231 TPLDTNRGDARLAIDILYRSAYAAQQN------G------------RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHHSCC
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHh------C------------CCCcCHHHHHHHHHHHhhh
Confidence 224556666676666544321 0 0126777777777665443
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=170.67 Aligned_cols=203 Identities=20% Similarity=0.241 Sum_probs=140.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh--------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-------- 290 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-------- 290 (498)
+++|++++++.+...+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 5889999999888876542110 00112344689999999999999999999999999999999887543
Q ss_pred ----cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--c------CCCcEE
Q 010888 291 ----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SDELVF 358 (498)
Q Consensus 291 ----~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~~~vi 358 (498)
|+|..+. ..+....+...++||||||+|.+.+ .+++.|+..++.-. . .-.+++
T Consensus 536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred CCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-------------HHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 2221111 1234445556679999999998743 36777888877321 1 114578
Q ss_pred EEEEeCCCC-------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC---------C
Q 010888 359 VLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---------G 404 (498)
Q Consensus 359 VIaaTn~p~-------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~---------~ 404 (498)
||+|||.+. .+++++++||+..+.|++|+.+++..|++.++.... .
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 999999854 578999999998899999999999999998875321 1
Q ss_pred C-CCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 405 E-ESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 405 ~-~~~~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
. .+..++.+++.. ..+..+++..+++.+...++.+
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 1 112244455443 2345677777777777665554
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=149.11 Aligned_cols=179 Identities=21% Similarity=0.198 Sum_probs=122.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
...++.+|++++|++.+++.+...+... ...++||+||||||||++|+++++.+. ..++.+++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 3466788999999999999999877431 123599999999999999999999863 34788887
Q ss_pred cccchhcccCcHHHHHHHHHHH--HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 285 SSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
++..+. ......+....... ....+.+|+|||+|.+... ..+.|+..++.. ...+.+|++
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~---~~~~~~i~~ 146 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEMF---SSNVRFILS 146 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHT---TTTEEEEEE
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHhc---CCCCeEEEE
Confidence 654321 11111222211100 1134789999999988432 345566666532 334678888
Q ss_pred eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcC
Q 010888 363 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 419 (498)
Q Consensus 363 Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g 419 (498)
||.+..+.+++.+|+. .+.+++|+.++...+++..+....... +..++.++..+.|
T Consensus 147 ~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 147 CNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp ESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred eCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 9999899999999996 789999999999999998876544322 2234445555543
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=147.31 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=124.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~ 286 (498)
.++..|++++|++.+++.+.+.+.. ... .+++|+||||+|||++|+++++++ +.+++.+++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 5567899999999999999988743 122 249999999999999999999986 35678888765
Q ss_pred cchhcccCcHHHHHHHHHHHH-------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 287 VVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~-------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
.. ....++..+.... ...+.||+|||+|.+... ..+.|+..++. ....+.+
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~ 140 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSNSTRF 140 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTTTEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCCCceE
Confidence 32 1233444444433 234789999999988532 23445555553 2334677
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCC
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGY 420 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~ 420 (498)
|.+||.+..+.+++++|+. .+.+++|+.++...+++.++....... +..+..+++.+.|.
T Consensus 141 il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 201 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD 201 (323)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred EEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 8888988899999999995 799999999999999998775443332 22345566666553
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=152.75 Aligned_cols=160 Identities=10% Similarity=0.062 Sum_probs=114.3
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEeccccch
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 289 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~s~l~~ 289 (498)
|.|.++..+.+...+...+. ...+.+++|+||||||||++++++++++ ...++++||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 55666777777766644332 3456899999999999999999999998 35688999876532
Q ss_pred h----------c------ccCcHHHHHHHHHHH--HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 290 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 290 ~----------~------~G~~~~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
. . .+.....+...|... ....+.||+|||+|.+. . ..++..++....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence 2 1 234566677778764 34567899999999996 1 123333443322
Q ss_pred cCCCcEEEEEEeCCCCC----CCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCC
Q 010888 352 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~~----Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
....+++||+++|..+. |++++++||. ..+.|++++.++...|++.++...
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 23456889999998764 4455677986 579999999999999999988653
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-15 Score=150.47 Aligned_cols=187 Identities=21% Similarity=0.241 Sum_probs=130.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
...+.+|++++|.+.+++.+...+.. ...++.+||+||||||||++|+++++.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 35567899999999999999988743 1234578999999999999999999988542
Q ss_pred ------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 279 ------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 279 ------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
++.++...- .....++.++..+. ...+.||+|||+|.+.. ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~ 138 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNA 138 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-------------HHHHH
T ss_pred HHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-------------HHHHH
Confidence 233332210 01122444555443 23468999999998842 23456
Q ss_pred HHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCc
Q 010888 343 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYS 421 (498)
Q Consensus 343 Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s 421 (498)
|+..++. ....+++|.+|+.+..+.+.+++|+ ..+.++.|+.++...+++.++.......+ ..+..+++.+.| +
T Consensus 139 Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~ 213 (373)
T 1jr3_A 139 LLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 213 (373)
T ss_dssp HHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred HHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence 6777763 2345778888888888999999998 67999999999999999988765443322 235557777765 5
Q ss_pred HHHHHHHHHHH
Q 010888 422 GSDIRLVSKEA 432 (498)
Q Consensus 422 ~~dL~~L~~~A 432 (498)
++++..+++.+
T Consensus 214 ~r~~~~~l~~~ 224 (373)
T 1jr3_A 214 LRDALSLTDQA 224 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=140.37 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=143.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
....+|++++|.+.+++.+...+..... ...++.+++|+|||||||||+++++|++++.++...++..+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--
Confidence 4456899999999998888876543210 0134467999999999999999999999999887776654321
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-------c--------CCCc
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------Q--------SDEL 356 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~--------~~~~ 356 (498)
...+..++.. ...+.|+||||++.+.+. ..+.++..++... . .-..
T Consensus 90 ----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 ----QGDMAAILTS--LERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CC
T ss_pred ----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1222233221 234689999999988532 1222333332211 0 0123
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~ 435 (498)
+.++.+|+.+..|++++++||.....+++|+.++..++++..........+ ..+..+++++.| +++.+..+++.+...
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 566779999999999999999878899999999999999988765443322 235667777766 456666676655443
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 436 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 436 a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+..+ +. ..|+.+++.+++....
T Consensus 230 a~~~------~~------------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 230 LTVV------KA------------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHH------TC------------SSBCHHHHHHHHHHHT
T ss_pred HHHc------CC------------CCcCHHHHHHHHHHhC
Confidence 3221 00 1277777777777654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-16 Score=174.61 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=129.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEE
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFN 281 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~ 281 (498)
..+.+|++++|.++.++.+.+.+.. ...++++|+||||||||++|+++|+++ +.+++.
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 3467899999999999988887632 234679999999999999999999988 889999
Q ss_pred Eeccccc--hhcccCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 282 ISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 282 v~~s~l~--~~~~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
++++.+. ..+.|..+..++.++..+... .|+||||||+|.+.+...... .....+.+...++ . ..+.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~----~-~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA----R-GELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----T-TCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh----C-CCeE
Confidence 9998886 467788889999999988865 689999999999976543211 1122333444443 1 2366
Q ss_pred EEEEeCCCC----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC----CC-CCCCHHHHHHHh-----cCCcHHH
Q 010888 359 VLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GE-ESLPYDLLVERT-----EGYSGSD 424 (498)
Q Consensus 359 VIaaTn~p~----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~-~~~~l~~La~~t-----~g~s~~d 424 (498)
+|++||.+. .+++++.+||.. +.++.|+.+++..||+.++.... .. .+..+..++..+ ..+.+..
T Consensus 302 ~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 788888763 478999999975 99999999999999987764321 11 122244444443 3455666
Q ss_pred HHHHHHHHHh
Q 010888 425 IRLVSKEAAM 434 (498)
Q Consensus 425 L~~L~~~A~~ 434 (498)
...++.+|..
T Consensus 381 ai~lldea~a 390 (854)
T 1qvr_A 381 AIDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=155.60 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=100.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEecc-----ccchhc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-----SVVSKW 291 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s-----~l~~~~ 291 (498)
.|+|.+++++.+...+.. ..++||+||||||||++|+++|+.++ .++..+++. ++.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 689999999888766532 25899999999999999999999884 466666653 222222
Q ss_pred ccCcHHHHHHHHHHHHhc---CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC-------ccCCCcEEEEE
Q 010888 292 RGDSEKLIKVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------TQSDELVFVLA 361 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~viVIa 361 (498)
.+..... ...+..+... .++||||||++.+. ...++.|+..|+.- .......++|+
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ 154 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVA 154 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGCC-------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhh
Confidence 2211111 1222222221 46799999998764 33566777777532 11112224677
Q ss_pred EeCCCCC---CCHHHHhcccceeEecCCCH-HHHHHHHHHhcC
Q 010888 362 ATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP 400 (498)
Q Consensus 362 aTn~p~~---Ld~al~~Rf~~~i~~~~Pd~-~eR~~IL~~~l~ 400 (498)
|||.+.. +.+++++||...+.+++|+. +++..|++....
T Consensus 155 ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 155 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred ccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 7876432 45799999988899999987 778899987653
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=164.67 Aligned_cols=206 Identities=24% Similarity=0.286 Sum_probs=139.2
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh---
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--- 290 (498)
+++++|++++++.+...+...... ......|..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 357899999999998887543210 01112344689999999999999999999999 789999999877543
Q ss_pred ---------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc--------C
Q 010888 291 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 353 (498)
Q Consensus 291 ---------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~ 353 (498)
++|... ...+....+...++||||||+|.+. ..+++.|+..++.-.. .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEec
Confidence 112211 1223344455567999999999874 3467788888874311 1
Q ss_pred CCcEEEEEEeCCC--------------------------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC----
Q 010888 354 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---- 403 (498)
Q Consensus 354 ~~~viVIaaTn~p--------------------------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~---- 403 (498)
-.+++||+|||.+ ..+.+++++||+..+.+.+|+.++...|++.++....
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2357899999972 2467889999999899999999999999988764211
Q ss_pred -----CC-CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHH
Q 010888 404 -----GE-ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 404 -----~~-~~~~l~~La~~t~--g~s~~dL~~L~~~A~~~a~rrl 440 (498)
.. .+..++.|++..- .++.++|+.+++++...++.+.
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 11 1122444555443 4566777777777766665543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-15 Score=131.09 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=90.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~ 295 (498)
+++|.+...+.+.+.+... .....+|||+||||||||++|+++++.+ +.+++ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 6889999999998877542 2345789999999999999999999987 78999 999877544
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-------CC
Q 010888 296 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-------WE 368 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-------~~ 368 (498)
......+..+. +++|||||+|.+... .+..|+..+.. ...++.+|++||.+ ..
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~-------------~q~~Ll~~l~~---~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE-------------QQYHLVQLQSQ---EHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH-------------HHHHHHHHHHS---SSCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH-------------HHHHHHHHHhh---cCCCEEEEEECCcCHHHHHHcCC
Confidence 22344555554 378999999998543 34456666642 23345688889875 23
Q ss_pred CCHHHHhcccceeEecCC
Q 010888 369 LDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 369 Ld~al~~Rf~~~i~~~~P 386 (498)
+.+.+..|+.. +.+.+|
T Consensus 126 ~~~~L~~rl~~-~~i~lP 142 (145)
T 3n70_A 126 IIAELYYCFAM-TQIACL 142 (145)
T ss_dssp CCHHHHHHHHH-HEEECC
T ss_pred CCHHHHHHhcC-CEEeCC
Confidence 56677777632 344444
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-13 Score=136.55 Aligned_cols=213 Identities=18% Similarity=0.198 Sum_probs=136.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEecc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS 285 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~s 285 (498)
..++.+|++++|++.+++.|...+.. ... .+++|+||||||||++|+++++.+. ..+..++++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------GKL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 45678899999999999999887643 112 2499999999999999999999873 246677765
Q ss_pred ccchhcccCcHHHHHHHHHHHHh------cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 286 SVVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
+..+ ...++..+..... ..+.|++|||+|.+... ..+.|+..++.. ...+.+
T Consensus 86 ~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~~~~~ 143 (340)
T 1sxj_C 86 DDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TKNTRF 143 (340)
T ss_dssp SCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTTEEE
T ss_pred cccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CCCeEE
Confidence 5321 2233333332221 23689999999988432 345566666633 233567
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
|.+||.+..+.+++++|+. .+.++.++.++...++...+...... ++...+..+. ....+..|+
T Consensus 144 il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~--------------i~~~~~~~i~-~~s~G~~r~ 207 (340)
T 1sxj_C 144 CVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLK--------------LSPNAEKALI-ELSNGDMRR 207 (340)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCC--------------BCHHHHHHHH-HHHTTCHHH
T ss_pred EEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHH-HHcCCCHHH
Confidence 7788999999999999995 68888889998888888777443222 2222222222 233445566
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
+.+.++......... ....++.+++.+++....+
T Consensus 208 ~~~~l~~~~~~~~~~---~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 208 VLNVLQSCKATLDNP---DEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp HHHHTTTTTTTTCSS---SCCCBCHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhcCCc---ccccccHHHHHHHhCCCCH
Confidence 666665433211110 0123888888777665433
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-14 Score=142.89 Aligned_cols=179 Identities=14% Similarity=0.183 Sum_probs=118.1
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 277 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~----------- 277 (498)
....++.+|++++|++.+++.++..+.. ....+. ++|+||+|||||++++++++++..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3456778899999999999988876511 112233 999999999999999999996511
Q ss_pred ------------------eEEEEeccccchhcccCcHHHHHHHHHHHH--------------hcCCeEEEEcCccchhhh
Q 010888 278 ------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 278 ------------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~--------------~~~p~VL~IDEiD~l~~~ 325 (498)
+++.+++++.. ......++..+..+. ...|.||+|||++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~- 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK- 148 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-
Confidence 12233322110 001112344443332 22567999999998632
Q ss_pred ccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC
Q 010888 326 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 405 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 405 (498)
...+.++..++... ..+.+|.+|+.+..+.+.+++|+ ..+.|++|+.++...+++..+......
T Consensus 149 ------------~~~~~L~~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 ------------DAQAALRRTMEKYS---KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp ------------HHHHHHHHHHHHST---TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred ------------HHHHHHHHHHHhhc---CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 23455666665432 24677888999999999999999 779999999999999999887654433
Q ss_pred C--CCCHHHHHHHhcC
Q 010888 406 E--SLPYDLLVERTEG 419 (498)
Q Consensus 406 ~--~~~l~~La~~t~g 419 (498)
. +..+..+++.+.|
T Consensus 213 ~~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 213 LETKDILKRIAQASNG 228 (354)
T ss_dssp ECCSHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHcCC
Confidence 2 2335556665554
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-15 Score=132.58 Aligned_cols=131 Identities=12% Similarity=0.143 Sum_probs=89.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++.+. +++.++|+++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999999988875432 3346899999999999999999999988 99999998875443
Q ss_pred HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-CC----CCHHH
Q 010888 299 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 373 (498)
Q Consensus 299 l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~~----Ld~al 373 (498)
....+..+. +++|||||+|.+... .+..++..++... ..++.+|++||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHH
Confidence 345555543 479999999998643 2334555554321 3346678888764 33 44566
Q ss_pred HhcccceeEecCC
Q 010888 374 LRRLEKRILVPLP 386 (498)
Q Consensus 374 ~~Rf~~~i~~~~P 386 (498)
..|+.. +.+.+|
T Consensus 129 ~~rl~~-~~i~lP 140 (143)
T 3co5_A 129 AGLFSE-SVVRIP 140 (143)
T ss_dssp HHHSSS-EEEEEC
T ss_pred HHHhcC-cEEeCC
Confidence 667643 344444
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-14 Score=158.37 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=104.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhc-cCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE----eccccchhcc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFT-GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 292 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~-~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v----~~s~l~~~~~ 292 (498)
..|+|++.+|+.+...+... .+.... .......++||+||||||||++|+++|+.++...+.. ++..+.+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 57899999988775433221 000000 1123345899999999999999999999998766543 2233322211
Q ss_pred -----cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcE
Q 010888 293 -----GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELV 357 (498)
Q Consensus 293 -----G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~v 357 (498)
|... .....+..| .++||||||+|.+.+. .++.|+..|+.-. ..+.++
T Consensus 373 ~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SGGGTSSCS-EEECHHHHH---SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ecccccccc-ccCCeeEec---CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 1100 001122233 3489999999998543 4556777776321 123457
Q ss_pred EEEEEeCCCC-------------CCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCC
Q 010888 358 FVLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 358 iVIaaTn~p~-------------~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
.||+|||++. .+++++++||+. .+..+.|+.+ ...|.++.+..+
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 8999999986 899999999974 4455667777 888888877544
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-14 Score=149.02 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=142.0
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh---
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--- 290 (498)
+..++|.+...+++.+.+.. ......+|+|+|++||||+++|++++..+ +.+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 46788988888888877644 23445679999999999999999999987 479999999876432
Q ss_pred ----------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC--------Ccc
Q 010888 291 ----------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ 352 (498)
Q Consensus 291 ----------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~ 352 (498)
+.|.... ..+.|+.|.. ++|||||++.+... ++..|+..++. ...
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1111111 2234555443 78999999998643 44556665542 111
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH----h
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER----T 417 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~----t 417 (498)
...++.||+|||.. ..+.+.+..|+. .+.+.+|+..+|.+ ++++++. ..++. .
T Consensus 269 ~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~-----------~~~~~~~~~~ 336 (387)
T 1ny5_A 269 IEVNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPLRERKEDIIPLANHFLK-----------KFSRKYAKEV 336 (387)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCGGGCHHHHHHHHHHHHH-----------HHHHHTTCCC
T ss_pred eeccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcchhccccHHHHHHHHHH-----------HHHHHcCCCC
Confidence 22357899999973 224555555663 35667787766654 3333332 22222 2
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 418 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 418 ~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
.++++..+..+..+.|++++|++.+.++.....+++. .|+.+|+...++
T Consensus 337 ~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~~ 385 (387)
T 1ny5_A 337 EGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGK------FIDRGELSCLVN 385 (387)
T ss_dssp CEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSS------EECHHHHHHHC-
T ss_pred CCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCC------cCcHHHCcHhhh
Confidence 3578899999999999999999999999887665443 389999865543
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-12 Score=126.63 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 278 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------ 278 (498)
++++.+.+...+.. ...++.+||+||||+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 55677777766532 2344679999999999999999999988532
Q ss_pred EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 279 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 279 ~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
++.+++.+- ........++.+.+.+.. ..+.|++|||+|.+.. ...+.|+..++. ..
T Consensus 76 ~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-------------~a~naLLk~lEe---p~ 136 (334)
T 1a5t_A 76 YYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-------------AAANALLKTLEE---PP 136 (334)
T ss_dssp EEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-------------HHHHHHHHHHTS---CC
T ss_pred EEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-------------HHHHHHHHHhcC---CC
Confidence 333433210 011233456666666543 2468999999999842 245678888873 34
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY 420 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~ 420 (498)
..+++|.+||.++.+.+.+++|+ ..+.|+.|+.++...+++... . ..+..+..++..+.|-
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAGS 197 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTTC
T ss_pred CCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCCC
Confidence 45778888888999999999999 469999999999999998876 1 1222345566666653
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-11 Score=124.97 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=128.3
Q ss_pred CCCCCccccCcHHHHHHHHHHH-hccccCchhhccCCCCCceEEE--EcCCCCcHHHHHHHHHHHh---------CCeEE
Q 010888 213 PDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFF 280 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i-~~~l~~~~~~~~~~~~~~~vLL--~GppGtGKT~lAraia~~l---------~~~~i 280 (498)
|....++++|.+...+.+.+.+ ...... ....+..++| +||||+|||++++.+++++ +.+++
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 3445578999999999888876 432211 0123468999 9999999999999999876 45778
Q ss_pred EEeccccch------h----c------ccCc-HHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 281 NISASSVVS------K----W------RGDS-EKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 281 ~v~~s~l~~------~----~------~G~~-~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
++++..... . . .+.. ......+..... ...|.+|+|||+|.+...... .......
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~ 163 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYT 163 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHH
Confidence 888743211 0 0 0111 122223222222 245789999999998542110 0223344
Q ss_pred HHHHhhCCccCC--CcEEEEEEeCCCC---CCC---HHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC---CCCCCHH
Q 010888 343 LLIQMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---EESLPYD 411 (498)
Q Consensus 343 Ll~~ld~~~~~~--~~viVIaaTn~p~---~Ld---~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~---~~~~~l~ 411 (498)
++..+......+ .++.+|++|+.+. .++ +.+.+++...+.+++++.++..++++..+..... ..+..+.
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 444444332113 5677888887654 244 6677777666899999999999999876542211 1122355
Q ss_pred HHHHHhc------CCcHHHHHHHHHHHHhHH
Q 010888 412 LLVERTE------GYSGSDIRLVSKEAAMQP 436 (498)
Q Consensus 412 ~La~~t~------g~s~~dL~~L~~~A~~~a 436 (498)
.+++.+. | .+..+..++..++..+
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 5677777 5 4566667777665443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=139.23 Aligned_cols=52 Identities=35% Similarity=0.516 Sum_probs=44.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++..|++++|++.+++.+...+.. ..+++|+||||||||++|++++..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45677899999999999888876632 35899999999999999999999884
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-13 Score=138.20 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=131.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe--EEEEeccccchhc----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKW---- 291 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~--~i~v~~s~l~~~~---- 291 (498)
.+++|.+...+++.+.+... ......+|++|++||||+++|++++...+.. |+.+||+.+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 57889888888887766432 2334579999999999999999999988543 9999998764321
Q ss_pred ---------ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCC
Q 010888 292 ---------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 354 (498)
Q Consensus 292 ---------~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 354 (498)
.|.... ....|+.|.. ++|||||++.+... ++..|+..++.-. ...
T Consensus 199 lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 199 LFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEE
T ss_pred hcCccccccCCcccc-cCChHhhcCC---CeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCccee
Confidence 111111 1234555443 68999999998643 5556666665211 112
Q ss_pred CcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHH----HHHHHhcCCCCCCCCCCHHHHHHH----hcC
Q 010888 355 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVER----TEG 419 (498)
Q Consensus 355 ~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~----~IL~~~l~~~~~~~~~~l~~La~~----t~g 419 (498)
.++.+|++||.. ..+.+.+..|+. .+.+.+|...+|. .++++++. ..+.. ..+
T Consensus 262 ~~~rii~at~~~l~~~v~~g~fr~dL~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~-----------~~~~~~~~~~~~ 329 (368)
T 3dzd_A 262 VDIRVISATNKNLEEEIKKGNFREDLYYRLS-VFQIYLPPLRERGKDVILLAEYFLK-----------KFAKEYKKNCFE 329 (368)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-SEEEECCCGGGSTTHHHHHHHHHHH-----------HHHHHTTCCCCC
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHHHhC-CeEEeCCChhhchhhHHHHHHHHHH-----------HHHHHcCCCCCC
Confidence 257789999874 224456666763 4566677666654 33343332 22222 245
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 420 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 420 ~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+++..+..|..+.|++++|++.+.++......++
T Consensus 330 ~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~~ 363 (368)
T 3dzd_A 330 LSEETKEYLMKQEWKGNVRELKNLIERAVILCEG 363 (368)
T ss_dssp BCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999987665443
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=120.46 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCeEEEEeccccchhcccCc
Q 010888 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 222 G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------~~~~i~v~~s~l~~~~~G~~ 295 (498)
|++++.+.|+..+... . ..++||+||||+|||++|+++++.+ ...++.++++.- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 5677888888776431 2 4689999999999999999999864 346777776421 123
Q ss_pred HHHHHHHHHHHHhcC----CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 296 EKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~----p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
-..++.+.+.+...+ ..|++|||+|.+.. ...+.|+..++. ....+++|.+|+.+..+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-------------~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-------------QAANAFLKALEE---PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-------------HHHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence 345677777775432 46999999999842 246778888873 3344667777888899999
Q ss_pred HHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 372 AMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 372 al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
++++| .+.|+.|+.++...+++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 79999999999999888876
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=146.29 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=107.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccC----------chhhcc-------------------CCCCCceEEEEcCCCC
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-------------------LLSPWKGILLFGPPGT 262 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~----------~~~~~~-------------------~~~~~~~vLL~GppGt 262 (498)
.+.+.|+++.|++++|+.+.+.+.+++.+ ++.+.. ..+.++.+|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34588999999999999999999998844 333332 1233445999999999
Q ss_pred cHHHHHHHHHHHh---CCeEEEEeccccc------------hhcccC----cHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 263 GKTMLAKAVATEC---KTTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 263 GKT~lAraia~~l---~~~~i~v~~s~l~------------~~~~G~----~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
|||++|++++.+. +.+.+.|+..+.. .++.+. +++.++.++..|+...|++||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999877 6677777776544 455666 79999999999999999999999999999
Q ss_pred hhcc---ccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 324 SQRG---EAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 324 ~~r~---~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+. ... .......+++++++..+++...... |+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 8843 111 1124566788999999987654444 5555 77764
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=95.49 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 010888 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 466 (498)
Q Consensus 387 d~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD 466 (498)
|.++|.+||+.++++.+...+++++.||+.|.||||+||.++|++|+..++++. ..+|+.+|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999998889999999999999999999999999999999861 12499999
Q ss_pred HHHHHhccCCChhh--hHHHHHHHH
Q 010888 467 VEIALKNTRPSAHL--HAHRYEKFN 489 (498)
Q Consensus 467 ~~~AL~~~~ps~~~--~~~~~~~~~ 489 (498)
|..|++++.++... ....|.+|+
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 99999999998754 378899996
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.1e-10 Score=139.29 Aligned_cols=140 Identities=19% Similarity=0.301 Sum_probs=93.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH-HhCCeEEEEeccccchhcccCcHHHHHHHHHHHH---------------hcCCeE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR---------------HHAPST 313 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~-~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~---------------~~~p~V 313 (498)
..+++||+||||||||++|+.+.. ..+.+++.++++...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 347999999999999999955544 4478888888876542 233444443321 123479
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC-------CcEEEEEEeCCCC-----CCCHHHHhccccee
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW-----ELDAAMLRRLEKRI 381 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~-------~~viVIaaTn~p~-----~Ld~al~~Rf~~~i 381 (498)
|||||++....++.+.... ..++.+++ ..++..... .++.+|+|+|+|. .++++++||| ..+
T Consensus 1340 lFiDEinmp~~d~yg~q~~----lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNV----VLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHH----HHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred EEecccccccccccCchhH----HHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence 9999998754443222111 22233333 222221111 3588999999994 7999999999 779
Q ss_pred EecCCCHHHHHHHHHHhcCC
Q 010888 382 LVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 382 ~~~~Pd~~eR~~IL~~~l~~ 401 (498)
.++.|+.+++..|+..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887643
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=106.15 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCCCCCccccCc----HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 010888 212 SPDVKWESIKGL----ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~IvG~----~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~ 283 (498)
..+.+|+++++. ..+.+.+++++.... ..++.+++|+||||||||++++++++.+ |..++.++
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 356789998863 344444444443211 2335789999999999999999999977 66777788
Q ss_pred ccccchhcccCcHHH-HHHHHHHHHhcCCeEEEEcCccch
Q 010888 284 ASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~-l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
..++...+....... ....... -..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 776654332110000 0011222 235789999999854
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.7e-10 Score=100.12 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
+...++|+||+|+|||+++++++..+ |...++++..++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 45689999999999999999999988 777888888776543 112357899999998764321
Q ss_pred cccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC-CCCCCC--HHHHhcccceeEecC
Q 010888 327 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVPL 385 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn-~p~~Ld--~al~~Rf~~~i~~~~ 385 (498)
...++..++.....+..++|| ||| .|..+. +.+.+|+..-..+.+
T Consensus 100 -------------~~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 -------------QALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp -------------HHHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred -------------HHHHHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 222333333222222223444 555 454332 899999976665544
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-10 Score=91.45 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=69.9
Q ss_pred EecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCC
Q 010888 382 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP 461 (498)
Q Consensus 382 ~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~ 461 (498)
.-.+||.++|.+||+.++++.+...+++++.||+.|.||||+||.++|++|+..++++. ..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 34689999999999999999988889999999999999999999999999999998862 134
Q ss_pred CCHHHHHHHHhccCCC
Q 010888 462 IRPEDVEIALKNTRPS 477 (498)
Q Consensus 462 It~eD~~~AL~~~~ps 477 (498)
|+++||..|+++++|.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999998774
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-10 Score=91.17 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 010888 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 466 (498)
Q Consensus 387 d~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD 466 (498)
|.++|.+||+.+++..+...+++++.||+.|.||||+||..+|++|+..++++. ..+|+++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999999888888999999999999999999999999999887641 13499999
Q ss_pred HHHHHhccCCChhhhHHHH
Q 010888 467 VEIALKNTRPSAHLHAHRY 485 (498)
Q Consensus 467 ~~~AL~~~~ps~~~~~~~~ 485 (498)
|..|+++++|+.++++..|
T Consensus 64 f~~Al~~~~ps~~~~l~~y 82 (83)
T 3aji_B 64 FEKAYKTVIKKDEQEHEFY 82 (83)
T ss_dssp HHHHHHHHCC---------
T ss_pred HHHHHHHHccCchHHHHhc
Confidence 9999999999988555655
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.1e-10 Score=87.70 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.3
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCC
Q 010888 384 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 463 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It 463 (498)
|+|+.++|.+||+.+++..+...+++++.||+.|.||||+||..+|++|+..++++- ..+|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 689999999999999999888889999999999999999999999999999998851 12499
Q ss_pred HHHHHHHHhccCC
Q 010888 464 PEDVEIALKNTRP 476 (498)
Q Consensus 464 ~eD~~~AL~~~~p 476 (498)
.+||..|++++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=98.97 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=111.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc----
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~---- 288 (498)
+....+.++|.+...+.|.+ +.. ..++|+||+|+|||++++.++++.+...+++++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 44566789999988888887 521 4799999999999999999999987777888775420
Q ss_pred -h--hc------------------------------cc---C------cHHHHHHHHHHHHhc--CCeEEEEcCccchhh
Q 010888 289 -S--KW------------------------------RG---D------SEKLIKVLFELARHH--APSTIFLDEIDAIIS 324 (498)
Q Consensus 289 -~--~~------------------------------~G---~------~~~~l~~~f~~a~~~--~p~VL~IDEiD~l~~ 324 (498)
. .. .+ . ....+..+++..... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 00 00 0 001223344333332 389999999999864
Q ss_pred hccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC---------HHHHhcccceeEecCCCHHHHHHHH
Q 010888 325 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 325 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld---------~al~~Rf~~~i~~~~Pd~~eR~~IL 395 (498)
..... . ...+..+. +. ..++.+|.+++....+. ..+..|+...+.+++.+.++..+++
T Consensus 152 ~~~~~-----~-~~~l~~~~---~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LRGVN-----L-LPALAYAY---DN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CTTCC-----C-HHHHHHHH---HH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cCchh-----H-HHHHHHHH---Hc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 21100 0 11122222 21 12355666665421111 1123355567889999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 396 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 396 ~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
+..+.......+ +...+...+.|+. ..+..++.
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHH
Confidence 876643222222 2367778888754 34555444
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-09 Score=98.11 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=62.3
Q ss_pred CCCCCccccCcHH----HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 213 PDVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 213 ~~~~~~~IvG~~~----~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
...+|+++++.+. +.+.+.+++... + ....+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY---E-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC---C-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh---h-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 3568999998553 333333333221 0 01123789999999999999999999988 6788888887
Q ss_pred ccchhcccCcH-HHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 286 SVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 286 ~l~~~~~G~~~-~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
++......... ......+..... +.+|+|||++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~~ 129 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEAM 129 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC--
T ss_pred HHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCcC
Confidence 76543321110 001222333322 46999999977543
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=93.96 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=110.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc----
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~---- 288 (498)
+...-+.++|.+...+.|.+.+.. ...++|+||+|+|||++++.++++.+ .+++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 445567899999999999887632 15899999999999999999999886 6666654321
Q ss_pred --------h---hcc-------------------------cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh
Q 010888 289 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 289 --------~---~~~-------------------------G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
. ... ......+..+...+....|.+|+|||++.+...... .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~--~- 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR--G- 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT--T-
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc--c-
Confidence 0 000 011112222222232234899999999988531000 0
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC---------HHHHhcccceeEecCCCHHHHHHHHHHhcCCCC
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld---------~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
...+...+-..++.. .++.+|.++.....+. ..+..|+...+.+++.+.++-.++++..+....
T Consensus 148 ---~~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 148 ---GKELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp ---THHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred ---hhhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 012222232223311 2355565654321111 122335555788888999999999987664433
Q ss_pred CCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 404 GEE-SLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 404 ~~~-~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
... +..+..+...+.|+. .-+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 222 224556777777754 44555443
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=106.64 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=85.5
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHH-HHHhCCeEEEEec-c---ccchhcccC
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA-S---SVVSKWRGD 294 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lArai-a~~l~~~~i~v~~-s---~l~~~~~G~ 294 (498)
|+|++.+|+.|.-.+..... + .....+|||.|+||| ||++|+++ ++.+....+.... + .+.+...+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCcc--c-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 89999998888865533111 0 122348999999999 99999999 7766443332111 1 111111000
Q ss_pred -cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc------cCCCcEEEEEEeCCCC
Q 010888 295 -SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLAATNLPW 367 (498)
Q Consensus 295 -~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------~~~~~viVIaaTn~p~ 367 (498)
......+.+..|. .+++||||++.+.++ .+..|++.|+.-. .-+.++.||||+|...
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 0000012233332 379999999988543 5566666665211 2344688999999864
Q ss_pred -----------CCCHHHHhcccceeE-ecCCCHH
Q 010888 368 -----------ELDAAMLRRLEKRIL-VPLPDTE 389 (498)
Q Consensus 368 -----------~Ld~al~~Rf~~~i~-~~~Pd~~ 389 (498)
.|++++++||+..+. ...|+.+
T Consensus 351 ~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp --CCSCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred ccCCCCCccccCCChHHhhheeeEEEecCCCChh
Confidence 789999999975443 3445443
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=95.81 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=79.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH--------hC-CeEEEEeccccchhcc----------cC-----cHHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATE--------CK-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELARH 308 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~--------l~-~~~i~v~~s~l~~~~~----------G~-----~~~~l~~~f~~a~~ 308 (498)
-.|++|+||||||++|...+.. .| .+++..++.++..... .. ....+..++.. ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-PE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-GG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-cc
Confidence 5789999999999999886543 34 7777777765543221 11 11122222111 23
Q ss_pred cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCH
Q 010888 309 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 388 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~ 388 (498)
..++||+|||++.+.+.+...... . .++..+.. .+...+-||.+|+.+..|+.++++|+...++++.|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~---~-----rll~~l~~--~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI---P-----ENVQWLNT--HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC---C-----HHHHGGGG--TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccchh---H-----HHHHHHHh--cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 346899999999997654321111 1 13444442 2233455677888899999999999999898887654
Q ss_pred HH
Q 010888 389 EA 390 (498)
Q Consensus 389 ~e 390 (498)
..
T Consensus 156 ~~ 157 (199)
T 2r2a_A 156 GM 157 (199)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-08 Score=102.76 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=59.9
Q ss_pred CCCCccccCcHH----HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEecc
Q 010888 214 DVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 285 (498)
Q Consensus 214 ~~~~~~IvG~~~----~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s 285 (498)
+.+|+++++... +.+.+.+++..+ + ..+..+++|+||||||||++|+++++++ +.+++.++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 367999987432 333333333221 0 1124799999999999999999999866 4788888887
Q ss_pred ccchhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 286 SVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 286 ~l~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
++........ .......+.... .+.+|+|||++....
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~~ 228 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQA 228 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC---
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCC
Confidence 7655433211 111112222222 346999999976543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-08 Score=99.86 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=51.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe--EEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~--~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
..+...++|+||||||||++|.+++.+.+.+ |+.+...+....+....+..+..+.+...... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3445678999999999999999999876544 44442233333333445555666666665544 9999999998654
Q ss_pred c
Q 010888 326 R 326 (498)
Q Consensus 326 r 326 (498)
.
T Consensus 198 ~ 198 (331)
T 2vhj_A 198 A 198 (331)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-08 Score=79.34 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 010888 389 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 468 (498)
Q Consensus 389 ~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~ 468 (498)
++|.+||+.+++..+...+++++.+|+.|.||||+||.++|++|+..++++. ..+|+.+||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4689999999998887788999999999999999999999999999998851 1249999999
Q ss_pred HHHhccC-CChhh-hHHHH
Q 010888 469 IALKNTR-PSAHL-HAHRY 485 (498)
Q Consensus 469 ~AL~~~~-ps~~~-~~~~~ 485 (498)
.|++++. |+.+. ++..|
T Consensus 63 ~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHHTTCC-----------
T ss_pred HHHHHHHcCcCChHHHHhh
Confidence 9999984 55543 34443
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=111.94 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=90.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
.++++.||+|||||.+++++|+.+|.+++.++|++-.. ...+..+|..+...+ +.+++||++.+.+...
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL---- 714 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL---- 714 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH----
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH----
Confidence 67999999999999999999999999999999987543 244566666555443 8999999998854311
Q ss_pred hhHHHHHHHHHHHHHhhC----Cc------cCCCcEEEEEEeCCC----CCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 332 EHEASRRLKTELLIQMDG----LT------QSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~ld~----~~------~~~~~viVIaaTn~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
.+....+..+...+.. +. .-.....|++|.|+. ..|++++++|| +.+.+..||.+...+|+-
T Consensus 715 --s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 715 --SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp --HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 1111111222222210 10 112345677788843 46999999999 569999999998888754
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-07 Score=87.08 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=63.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
+..+++||+||||||||++|.++++.++..++....+. ..+ .+..+ ....+|+|||+|.-.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l--~~~kIiiLDEad~~~----- 116 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPL--TDTKVAMLDDATTTC----- 116 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGG--TTCSSEEEEEECHHH-----
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhccc--CCCCEEEEECCCchh-----
Confidence 33467999999999999999999999865543221110 000 01111 123589999998421
Q ss_pred cchhhHHHHHHHHHHHHHhhCCc----cCC------CcEEEEEEeCCC---CCCCHHHHhcccceeEecCC
Q 010888 329 ARSEHEASRRLKTELLIQMDGLT----QSD------ELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~ld~~~----~~~------~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~P 386 (498)
.+.+...+...+++.. .+. ....+|.|||.+ +.--+.+.+|+ ..+.|+.|
T Consensus 117 -------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 117 -------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp -------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred -------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 1223345556666641 111 112456688874 22336788898 44666644
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9e-07 Score=110.66 Aligned_cols=138 Identities=21% Similarity=0.318 Sum_probs=87.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeccccchhcccCcHHHHHHHHHHH----H------------hcCCe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELA----R------------HHAPS 312 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a----~------------~~~p~ 312 (498)
..++|||+||||||||++++.....+ +.+++.++++.-. +...+...++.. . ..+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 34789999999999998876655544 6678888887643 223344444321 0 01235
Q ss_pred EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-------CCCcEEEEEEeCCCC-----CCCHHHHhcccce
Q 010888 313 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPW-----ELDAAMLRRLEKR 380 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~ 380 (498)
|+||||++....+..+.... -.++.+++..- +... .-.++.+|+|+|.|. .+++++.||| ..
T Consensus 1377 VlFiDDiNmp~~D~yGtQ~~----ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~v 1450 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQRV----ITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PI 1450 (3245)
T ss_dssp EEEETTTTCCCCCTTSCCHH----HHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CE
T ss_pred EEEecccCCCCccccccccH----HHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eE
Confidence 99999998654433222111 12222333221 1111 113578899999883 5999999999 55
Q ss_pred eEecCCCHHHHHHHHHHhc
Q 010888 381 ILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l 399 (498)
+.++.|+.++...|+..++
T Consensus 1451 i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999876543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=102.32 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=76.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----hc------------ccCcHHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KW------------RGDSEKLIKVLFELARH 308 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----~~------------~G~~~~~l~~~f~~a~~ 308 (498)
..++.+++|+||||||||+||.+++.+. |.....++..+... .. ....++.++.+...++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 5677899999999999999999998876 56677777654321 11 12345667777778888
Q ss_pred cCCeEEEEcCccchhhhcc---ccchhhH-HHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 309 HAPSTIFLDEIDAIISQRG---EARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~r~---~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.+|++|+||+++.+.+... .....+. ...++.++++..+.+...... ++|| +||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 8999999999998876421 1111111 124566677777766544433 4444 55543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=72.90 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886443
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.3e-06 Score=81.73 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
++.++++|+||||||||++|+++|+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998654
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-05 Score=77.70 Aligned_cols=143 Identities=15% Similarity=0.106 Sum_probs=87.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CC-eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccc-
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDA- 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~-~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~- 321 (498)
.+.+||+||+|+||++.++.+++.+ +. ++..+... +. ..++.+.+.+. .....|++|||++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN------TDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT------CCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC------CCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 3689999999999999999998876 32 32222111 11 11233333332 23467999999987
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC-----CCCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~-----p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
+.. ...+.|+..++.. ....++|+++++. ...+.+++.+|+ ..+.+..++.++....++
T Consensus 89 l~~-------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 89 PNA-------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCT-------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred CCh-------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 632 2345677777633 2333444444432 134667888888 568899999888888888
Q ss_pred HhcCCCCCCCCC-CHHHHHHHhc
Q 010888 397 SLLPSQTGEESL-PYDLLVERTE 418 (498)
Q Consensus 397 ~~l~~~~~~~~~-~l~~La~~t~ 418 (498)
..+.......+. .+..++..+.
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~ 175 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYE 175 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSST
T ss_pred HHHHHcCCCCCHHHHHHHHHHhc
Confidence 887665544222 2344454444
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-05 Score=97.62 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=88.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+... .+-.++||++.+....-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSv-- 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSA-- 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHH--
Confidence 46789999999999999999999999999999986542 23455555555443 3789999999885331100
Q ss_pred hhHHHHHHHHHHHHHh-----h-CC-ccCCCcEEEEEEeCCC----CCCCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 332 EHEASRRLKTELLIQM-----D-GL-TQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~l-----d-~~-~~~~~~viVIaaTn~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
-......++..+.... . |- -.-.....|++|.|.- ..|++.+++|| +.+.+..||.+...+|+-.
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 0000111111221110 0 10 0112345677788843 56999999999 5599999999888887644
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.8e-05 Score=83.42 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=80.9
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE---------eC---CCCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa---------Tn---~p~~Ld~al~~Rf~ 378 (498)
|.|+||||+|.|. ....+.|+..++.. ...++|+++ ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 4699999999984 34677888888743 233544444 22 16779999999996
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 456 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t-~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~ 456 (498)
. +.+++|+.++...+|+..+.......+ ..+..++... .| +++..-.+++.|...+.. ++
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~------~~---------- 421 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKI------NG---------- 421 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHH------TT----------
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhh------cC----------
Confidence 6 699999999999999988753332211 1233344444 32 444444444443322211 11
Q ss_pred CCCCCCCHHHHHHHHhccC
Q 010888 457 PQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 457 ~~~~~It~eD~~~AL~~~~ 475 (498)
...|+.+|+..++..+-
T Consensus 422 --~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 422 --KDSIEKEHVEEISELFY 438 (456)
T ss_dssp --CSSBCHHHHHHHHHHSC
T ss_pred --CCccCHHHHHHHHHHhc
Confidence 12399999999987653
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00014 Score=78.68 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=96.1
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH-------hCCeEEEEecccc
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-------CKTTFFNISASSV 287 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~-------l~~~~i~v~~s~l 287 (498)
.....++|.+...+.|.+.+... ....+.|+|+||+|+|||++|+.+++. .....+.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34567999999999999887421 122467899999999999999999753 2222444433221
Q ss_pred -----chhc----------------ccCc-HHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHH
Q 010888 288 -----VSKW----------------RGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 344 (498)
Q Consensus 288 -----~~~~----------------~G~~-~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll 344 (498)
.... .... ......+...... ..|.+|+|||++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 0000 0011 1112222222222 267999999997521 11
Q ss_pred HHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEec---CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 010888 345 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVP---LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421 (498)
Q Consensus 345 ~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~---~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s 421 (498)
+.+ .....||.||..+..... . . ...+.++ ..+.++-.+++...+.............+++++.|..
T Consensus 252 ---~~l---~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 ---KAF---DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp ---HTT---CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred ---HHh---cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 112 122456667765332110 0 0 2233443 4688888899988775422222334677888888754
Q ss_pred HHHHHHH
Q 010888 422 GSDIRLV 428 (498)
Q Consensus 422 ~~dL~~L 428 (498)
-.|+.+
T Consensus 322 -Lal~~~ 327 (591)
T 1z6t_A 322 -LVVSLI 327 (591)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 344443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00045 Score=80.51 Aligned_cols=178 Identities=10% Similarity=0.035 Sum_probs=102.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEec
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~ 284 (498)
..+.....++|.+..+++|.+.+... ....+-+.|+|+.|+|||+||+.+++.. ...++.++.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 34455677999999999999887431 1223568899999999999999988752 222344544
Q ss_pred cccch------------h---------cccCcHHHHHHHHHHHHhc--CCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 285 SSVVS------------K---------WRGDSEKLIKVLFELARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 285 s~l~~------------~---------~~G~~~~~l~~~f~~a~~~--~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+.... . ........+...+...... ++.+|+||+++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 33100 0 0011122233333333232 37899999997531
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecC-CCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~-Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~ 420 (498)
.++.+. ....||.||..+..... . ..-...+.++. .+.++-.+++................++++++.|.
T Consensus 250 ----~~~~~~---~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 ----VLKAFD---NQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp ----HHTTTC---SSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred ----HHHhhc---CCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 112121 22346667765533211 0 11234566665 78888889998877544333334467788888876
Q ss_pred cHHHHHH
Q 010888 421 SGSDIRL 427 (498)
Q Consensus 421 s~~dL~~ 427 (498)
.- .|+.
T Consensus 321 PL-al~~ 326 (1249)
T 3sfz_A 321 PL-VVSL 326 (1249)
T ss_dssp HH-HHHH
T ss_pred HH-HHHH
Confidence 43 3443
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.72 E-value=1.4e-05 Score=82.31 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=65.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhh-hc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 326 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~-~r 326 (498)
.+++..++|+||||+||||++++++...+..++.+...+- .....+.. .....++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~------~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGV------AIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGG------GTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHH------hcchhHHHHHHHHHHHHHHh
Confidence 5666789999999999999999999998777655433221 00111111 12336789999998865 22
Q ss_pred cccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh--cccceeE
Q 010888 327 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRIL 382 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~ 382 (498)
.-....... ....+...++|. +.|+.+||+++.+ +++++ |++..++
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~ 281 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEY 281 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSC
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHH
Confidence 111101100 123344445542 3467788888887 45554 5544333
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00037 Score=64.83 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=33.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
...+..-++|.||||+|||++++.++...+.+.++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566678999999999999999999986677888887654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00027 Score=66.10 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++..++|.||||+|||++++.++... +.+++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4556779999999999999999999654 555655553
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=73.74 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=53.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a~ 307 (498)
++++..-++|+||||+|||+|+..++..+ +.++++++..+.... .....+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666789999999999999999999875 667777876543210 01122333333333334
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 56789999999998875
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00021 Score=73.13 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----c------------cCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----R------------GDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~----~------------G~~~~~l~~~f~~a~ 307 (498)
++++..-++|+||||+|||++|..++... +.++++++........ . ...+..+..+-...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 35566789999999999999999998765 6678888765422111 0 112233333323334
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...+.+|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999999874
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=68.93 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=50.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH--h-------CCeEEEEeccccc--h------hccc---------------C
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASSVV--S------KWRG---------------D 294 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~--l-------~~~~i~v~~s~l~--~------~~~G---------------~ 294 (498)
..++..-++|+||||+|||++++.++.. . +...++++..... . ...| .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3556678999999999999999999985 3 4567777765410 0 0001 0
Q ss_pred -cHH---HHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 295 -SEK---LIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 295 -~~~---~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
... .+..+........|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 122233444456789999999988764
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=72.11 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=52.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccc--h------hccc----------------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV--S------KWRG---------------- 293 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~--~------~~~G---------------- 293 (498)
..++..-++|+||||+|||+++..++... +.+.++++..... . ...|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 35566789999999999999999999875 5677888775421 0 0000
Q ss_pred CcH---HHHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 294 DSE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ~~~---~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
..+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 111 122333344444 67899999999998753
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00017 Score=73.35 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----ccc------------CcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----~~G------------~~~~~l~~~f~~a~ 307 (498)
..++..-++|+||||+|||+++..++... +.+.++++....... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566789999999999999999998765 567777776432211 011 12222222333344
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00037 Score=70.54 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=52.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccch--------hccc----------------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS--------KWRG---------------- 293 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~~--------~~~G---------------- 293 (498)
..++..-++|+||||+|||+++..++... +.+.++++...... ...|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666779999999999999999999863 55777887654210 0000
Q ss_pred CcH---HHHHHHHHHHHh--cCCeEEEEcCccchhhh
Q 010888 294 DSE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ~~~---~~l~~~f~~a~~--~~p~VL~IDEiD~l~~~ 325 (498)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011 112223344444 67899999999998754
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00036 Score=65.37 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+..-+.|.||+|+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35566789999999999999999999854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=8.7e-05 Score=67.02 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..++|.|+||+||||+++.+++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 568999999999999999999999998887765433
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0027 Score=68.26 Aligned_cols=166 Identities=12% Similarity=-0.010 Sum_probs=89.4
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHH----HhCCe---EEEEeccccc-----
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT----ECKTT---FFNISASSVV----- 288 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~----~l~~~---~i~v~~s~l~----- 288 (498)
+|.+..+++|.+.+... .....+.|.|+|+.|+|||+||+.+++ ..... .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999999887431 012246788999999999999999997 33222 2333333310
Q ss_pred -------hhcc------------cCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 289 -------SKWR------------GDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 289 -------~~~~------------G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
.... ......+...+...-.. ++.+|+||+++... .+ .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------------~~--~~~~-~- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------TI--RWAQ-E- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------HH--HHHH-H-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------------hh--cccc-c-
Confidence 0000 00111222333333334 37999999997641 11 1111 1
Q ss_pred CCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHhcCCc
Q 010888 349 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES--LPYDLLVERTEGYS 421 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~--~~l~~La~~t~g~s 421 (498)
.+ ..||.||....... . .......+.++..+.++-.+++..+....+...+ ....++++++.|..
T Consensus 264 ----~g--s~ilvTTR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ----LR--LRCLVTTRDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ----TT--CEEEEEESBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ----CC--CEEEEEcCCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 12 34566776532111 0 0012245778888999999999988543321010 11345666677643
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00038 Score=66.22 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc-------cchhcccCc-----HHHHHHHHHHHHh----cCC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS-------VVSKWRGDS-----EKLIKVLFELARH----HAP 311 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~-------l~~~~~G~~-----~~~l~~~f~~a~~----~~p 311 (498)
..-++++||+|+|||+++..++.++ +...+.++... +.+. .|.. ......+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3567889999999999999888876 55666664322 1111 1100 0011234444443 357
Q ss_pred eEEEEcCccch
Q 010888 312 STIFLDEIDAI 322 (498)
Q Consensus 312 ~VL~IDEiD~l 322 (498)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999865
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00031 Score=85.17 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=56.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc----------------cCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------GDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~----------------G~~~~~l~~~f~~a~ 307 (498)
..++...++|+||||||||++|.+++.+. |.+.++++..+...... +..+...+-.....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46677899999999999999999998765 78888888876543322 112222333333444
Q ss_pred hcCCeEEEEcCccchhhh
Q 010888 308 HHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~~ 325 (498)
...|++|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 567999999999999654
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00033 Score=71.38 Aligned_cols=78 Identities=26% Similarity=0.318 Sum_probs=51.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----cc-----------CcHHHHHHHHH-HHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~----~G-----------~~~~~l~~~f~-~a~ 307 (498)
+.++...++|+||||+|||++|..++... +.+.++++........ .| .....+..+.. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 35566789999999999999999998765 6678888774322110 00 11122222332 334
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999874
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0013 Score=69.19 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=34.8
Q ss_pred CCCCCCCcccc-CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 211 GSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 211 ~~~~~~~~~Iv-G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+.+|+++- ++..+...+...+.. ....++|.|+||||||+++.+++..+
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44567777774 455555555544422 12389999999999999999999877
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0032 Score=67.72 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=53.1
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC--CCCHHHHhcccceeEecCCCHH
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~--~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
-+|+|||+..+..... +.+...+..... ..+.-.|.+|.+|.+|. .++..+++-|...+.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar--~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ--KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH--HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH--HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998865321 112222222222 22445588899999997 7999999999999999999998
Q ss_pred HHHHHHHH
Q 010888 390 ARRAMFES 397 (498)
Q Consensus 390 eR~~IL~~ 397 (498)
+...+|..
T Consensus 414 Dsr~ILd~ 421 (574)
T 2iut_A 414 DSRTILDQ 421 (574)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCc
Confidence 88888743
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=66.95 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+.++|.||||+||||+++.+++.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999999999999988754
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0004 Score=63.90 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.-++++||+|+|||+++..++.++ +.+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457899999999999996666554 55555443
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0028 Score=66.25 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch-----------
Q 010888 224 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------- 289 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------- 289 (498)
+.+++.+.+.+...+...........++.-+++.|++|+||||++..+|..+ |..+..+.+.....
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 3455555554444332211111112346788999999999999999999877 56666665432210
Q ss_pred --------h-cccCcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 290 --------K-WRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 290 --------~-~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
. ............+..+....+.+++||....+
T Consensus 153 ~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 153 RYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp GGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred hcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 0 11123344556677777777899999988654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00016 Score=67.01 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+...++|.||||+||||+++.+++.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4456899999999999999999999999888654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00064 Score=70.34 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=49.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccch--------hcccC--------------
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS--------KWRGD-------------- 294 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~~--------~~~G~-------------- 294 (498)
+...+..-++|+||||+|||+|++.++-.. +...++++..+... ...|-
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 345666789999999999999999776433 34577777654210 00010
Q ss_pred --c---HHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 295 --S---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 295 --~---~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
. ...+..+........|.+|+||++-.+...
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 111222333444567899999999887643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=67.29 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
..++..-+.|+||||+|||+|++.++... +...++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 35666789999999999999999999876 24557776644
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=65.97 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=49.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccccchh----ccc------------CcHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK----WRG------------DSEKLIKVLFEL 305 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~----~~G------------~~~~~l~~~f~~ 305 (498)
+.++. -++|+||||+|||+|+..++... +...++++..+-... -.| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34555 68999999999999988876654 567888887543211 001 122220222222
Q ss_pred ---HHhcCCeEEEEcCccchhh
Q 010888 306 ---ARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 306 ---a~~~~p~VL~IDEiD~l~~ 324 (498)
.+...|.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2456799999999999975
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0025 Score=60.05 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
...+...++|.||||+|||+++..++... +.+.++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45666789999999999999998887644 556666654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00075 Score=67.37 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------------C----CeEEEEeccccc--hh------ccc------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------------K----TTFFNISASSVV--SK------WRG------ 293 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------------~----~~~i~v~~s~l~--~~------~~G------ 293 (498)
..++..-++|+||||+|||+++..++... | .+.++++..... .. ..|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 35666779999999999999999998753 2 577777765431 10 000
Q ss_pred ----------CcHH---HHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 294 ----------DSEK---LIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ----------~~~~---~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
..+. .+..+...... ..+.+|+||.+..+...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 0111 12223334444 56789999999998753
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00027 Score=64.02 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
...++|.|+||+||||+++.+++.++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45799999999999999999999999877654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=62.95 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445679999999999999999999999876777777655
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0003 Score=62.74 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876554
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00035 Score=63.04 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0086 Score=56.89 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..+++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998876 666554443
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00044 Score=62.95 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+..++|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34678999999999999999999999987765
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=62.93 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+++|.|+|||||||+++.+++.+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999988754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00029 Score=64.04 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.|+|.|+||+|||++++.+++.+|.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 589999999999999999999999887643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00092 Score=80.14 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=53.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----hccc------------CcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRG------------DSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----~~~G------------~~~~~l~~~f~~a~ 307 (498)
...++..++|+||||+|||++|..+|... +.++++++..+... ...| ..+.....+-...+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35677889999999999999999998876 55788887654431 1111 11222222222233
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00034 Score=63.93 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-hCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE-CKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~-l~~~~i~v 282 (498)
+..++|+|+|||||||+++.+++. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 68776644
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00049 Score=61.65 Aligned_cols=29 Identities=31% Similarity=0.750 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
..+.|.||+|+||||+++.++..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46899999999999999999999997655
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00047 Score=69.21 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
..++|.||+|+|||++++.+|++++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 47899999999999999999999998888886543
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00093 Score=65.90 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.+..++|.||||+||||+++.++.+++..++.+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 456789999999999999999999986566777764443
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00047 Score=62.69 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3568999999999999999999999987654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00046 Score=62.90 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 445678999999999999999999987777777765443
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0005 Score=62.79 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.+++.++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999999876654
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00051 Score=63.40 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34689999999999999999999999887654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.013 Score=62.38 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=50.8
Q ss_pred Ce-EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC--CCCHHHHhcccceeEecCCC
Q 010888 311 PS-TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPD 387 (498)
Q Consensus 311 p~-VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~--~Ld~al~~Rf~~~i~~~~Pd 387 (498)
|. +|+|||+..+.... .......+..+... .+.-.+-+|.+|.+|. .++..+++.+...+.+...+
T Consensus 297 P~ivlvIDE~~~ll~~~------~~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s 365 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV------GKKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS 365 (512)
T ss_dssp CEEEEEEETHHHHHHHH------HHHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSS
T ss_pred CcEEEEEeCHHHHHhhh------hHHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCC
Confidence 44 89999998776421 01111222222211 1222477788998886 58888999998889999999
Q ss_pred HHHHHHHHHH
Q 010888 388 TEARRAMFES 397 (498)
Q Consensus 388 ~~eR~~IL~~ 397 (498)
..+...++..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 9999888864
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00047 Score=61.25 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
-++|.||||+||||+++.+ +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8889887654
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00055 Score=66.15 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
-++|.||||+||||+|+.+|++++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999998877654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00064 Score=61.62 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..++|.|+||+||||+++.+++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 468999999999999999999999876653
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0007 Score=60.55 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..++|.|+||+|||++++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00077 Score=63.20 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999876654
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0061 Score=57.45 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~----l~~~~i~v~~ 284 (498)
+.++..-++|+|+||+|||+++..++.. .+.+.++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566678999999999999999887643 2667777664
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0059 Score=63.68 Aligned_cols=73 Identities=18% Similarity=0.112 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---cc-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~G-~~~~~l~~~f~~a 306 (498)
++.-+++.||+|+||||++..+|..+ |..+..+++.-... . + .+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45778999999999999999999876 56665555431110 0 0 01 1222234445555
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999988654
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=62.62 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~---l~~~~i~v~~s~l~ 288 (498)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 356899999999999999999998 68888766655443
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0082 Score=55.75 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc---------ccchhcc-------------cC----cHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS---------SVVSKWR-------------GD----SEKLIKVL 302 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s---------~l~~~~~-------------G~----~~~~l~~~ 302 (498)
..+++|+++|.|||++|-++|-+. |.++..+... .+..... .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468899999999999999998876 7777666221 1222210 00 11223334
Q ss_pred HHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhccc
Q 010888 303 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 378 (498)
Q Consensus 303 f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~ 378 (498)
+..++. ....+|+|||+.....-. ... .+.++..+. .+....-||.|+|. .++++...-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g---~l~-------~~ev~~~l~---~Rp~~~~vIlTGr~---ap~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD---YLP-------LEEVISALN---ARPGHQTVIITGRG---CHRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT---SSC-------HHHHHHHHH---TSCTTCEEEEECSS---CCHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC---CCC-------HHHHHHHHH---hCcCCCEEEEECCC---CcHHHHHhCc
Confidence 444433 457899999996543211 000 122444444 33444567778886 3667777665
Q ss_pred ceeEe
Q 010888 379 KRILV 383 (498)
Q Consensus 379 ~~i~~ 383 (498)
.+-++
T Consensus 173 ~VTem 177 (196)
T 1g5t_A 173 TVSEL 177 (196)
T ss_dssp EEEEC
T ss_pred ceeee
Confidence 54444
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0034 Score=62.55 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh--------------------cccCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------------WRGDSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--------------------~~G~~~~~l~~~f~~ 305 (498)
.++.-++|.||+|+||||++..+|..+ +..+..+++...... ..+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 455678999999999999999999876 455555544211100 011222222334455
Q ss_pred HHhcCCeEEEEcCccc
Q 010888 306 ARHHAPSTIFLDEIDA 321 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~ 321 (498)
+....|.+|+||+...
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5667789999998854
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0044 Score=59.07 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
..+++.||+|+|||.++.+++...+.+.+.+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3599999999999999999999887666666543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00059 Score=61.62 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
..++|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 56899999999999999999999998876
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.001 Score=59.71 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..++|.||+|+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4578999999999999999999998876553
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00077 Score=73.03 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++|.||||||||+++.+++..+ +.++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 578999999999999999998865 566655543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00096 Score=61.58 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..++|.|++|+||||+++.+++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877664
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00072 Score=61.83 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5699999999999999999999999766544
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00071 Score=63.13 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.||||+||||+++.++++++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998877655
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00073 Score=60.66 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HhCCeE
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT-ECKTTF 279 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~-~l~~~~ 279 (498)
.-++|.|+||+||||+++.+++ ..+..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4689999999999999999998 455433
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00078 Score=60.00 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999877643
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00085 Score=60.80 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++|.|+||+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00085 Score=64.34 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++..++|.||||+||||+++.+++.++.+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999998776644
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00072 Score=63.81 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.+++.++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35799999999999999999999999876644
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00088 Score=61.75 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+..|+|.|+||+||||+++.+++.++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 356899999999999999999999998666543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=59.94 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999999999999999766644
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00073 Score=62.97 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877654
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0012 Score=62.62 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.++++++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999876654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0013 Score=60.86 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
++..+.|.||+|+||||+++.++..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3467899999999999999999999976544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0021 Score=65.44 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=44.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec-cccc---------hhcccCcHHHHHHHHHHHHhcCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 316 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~-s~l~---------~~~~G~~~~~l~~~f~~a~~~~p~VL~I 316 (498)
...++|.||+|+||||+.++++..+ +..++.+.- .++. ....+.........+..+-...|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3478999999999999999998866 334443321 1111 0011111112334666777789999999
Q ss_pred cCcc
Q 010888 317 DEID 320 (498)
Q Consensus 317 DEiD 320 (498)
||.-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9994
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0011 Score=66.17 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
+.-++|.||+|+|||+|+..+|+.++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3568899999999999999999999988877765444
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0015 Score=61.90 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=30.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...++-++|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 34456788999999999999999999998754 4555544
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0058 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKA 270 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAra 270 (498)
.++.-+.|.||+|+||||+++.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3446789999999999999994
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=62.32 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..++|.||||+||||+++.+++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3579999999999999999999999976554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.012 Score=57.30 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-++|+||+|+|||+++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556789999999999999999998744
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00094 Score=67.77 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=37.5
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..+.+.+.+.+.+...+. .....+++|.|+||+|||+++++++..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--------~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--------DNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--------TCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--------cCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3455566666665543221 1122469999999999999999999999888755
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=61.64 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..++|.|+||+||||+++.+++.++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.002 Score=58.25 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
++..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34568899999999999999999988 88988887543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.013 Score=61.48 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..++.-++|.|+||+|||+++..++... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36677789999999999999999998754 557777664
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0033 Score=61.08 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=43.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEecccc---c--------hhcccCcHHHHHHHHHHHHhcCCeE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV---V--------SKWRGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l---~--------~~~~G~~~~~l~~~f~~a~~~~p~V 313 (498)
.+...++|.||+|+||||++++++... ...++.. ...+ . ....|.....++..+..+-...|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 445679999999999999999999865 2222221 1110 0 0001101112344555565668999
Q ss_pred EEEcCcc
Q 010888 314 IFLDEID 320 (498)
Q Consensus 314 L~IDEiD 320 (498)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999984
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0017 Score=60.88 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.++|.||||+||+|.|+.|++.++.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3788999999999999999999987654 444443
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.035 Score=63.71 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=35.0
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
+|.+..+++|.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999998877421 12357899999999999999999863
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0019 Score=59.57 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.++..+.|.||+|+||||+++.++..+ |...+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 445678899999999999999999988 55544555433
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0017 Score=62.07 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.+..+.|.||+|+||||+++.+++.+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3467999999999999999999999987544
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0021 Score=58.35 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.+.|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88887664
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0018 Score=60.37 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|+||+||||+++.+++.++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999999877654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0024 Score=59.75 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999977653
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0018 Score=59.18 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.016 Score=60.52 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 46677789999999999999999998754 567777765
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0022 Score=58.86 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~ 283 (498)
+..+.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4578999999999999999999998 57777654
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0023 Score=60.37 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998765543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=59.35 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK---TTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~ 284 (498)
.++|.|+||+||||+++.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 588999999999999999999885 33555543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.04 Score=54.36 Aligned_cols=59 Identities=24% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 225 NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 225 ~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 80 ~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp THHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4555555555443322211 1112345688999999999999999998765 546665554
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0019 Score=59.45 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+.|.|++|+||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887776543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0029 Score=58.12 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+.|.|++|+|||++++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998877543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0034 Score=60.06 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..+.|.||||+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3568999999999999999999999977654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0033 Score=60.76 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
...+.|.|++|+||||+++.++..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999987764
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.003 Score=58.14 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.-|+|.|+||+||||+++.+++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 568999999999999999999998763
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0052 Score=62.81 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=43.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEecc-cc--------chh-cccCcHHHHHHHHHHHHhcCCeEE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SV--------VSK-WRGDSEKLIKVLFELARHHAPSTI 314 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s-~l--------~~~-~~G~~~~~l~~~f~~a~~~~p~VL 314 (498)
.+...++|.||+|+||||++++++..+. ..++.+... ++ ... ..|.....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 4456799999999999999999998652 333333211 10 000 001011122345555556789999
Q ss_pred EEcCcc
Q 010888 315 FLDEID 320 (498)
Q Consensus 315 ~IDEiD 320 (498)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999994
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.003 Score=58.47 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..+.|+|++||||||+++.+++.+|.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3477999999999999999999989877654
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0017 Score=64.89 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-++|.||+|+|||+++..+|+.++..++..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 457899999999999999999999887776665433
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0039 Score=57.04 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+..|.|.|++|+||||+++.+++. |.+++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 3457899999999999999999998 7766643
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=63.87 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
+.++|.||+|+|||+|+..+|++++.+++..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 5689999999999999999999999888776543
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0015 Score=60.34 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
+.-++|.|+||+||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999987543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0049 Score=59.28 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
+...+.|.||+|+||||+++.+++.+|.+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3457889999999999999999999998765
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0034 Score=57.96 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 578999999999999999988 8877664
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.054 Score=50.10 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=33.5
Q ss_pred CCCccccCcHHHHHHHHHHHhc-cccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 215 VKWESIKGLENAKRLLKEAVVM-PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~-~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+|+++.=.+.+.+.+.+.-.. +..++...-......+.+++.+|+|+|||..+-..+-+.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 4577775556666666542111 111111100011123679999999999998776655444
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0035 Score=58.00 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++.-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567799999999999999999999884
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0052 Score=55.74 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++..++|.|+||+||||+++.++..+ +.++..++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345678999999999999999999987 4445555543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.05 Score=54.05 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..+|... +.+.++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 35666789999999999999999998765 467777764
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.015 Score=53.90 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHh--CCeEEEEecc
Q 010888 251 WKGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISAS 285 (498)
Q Consensus 251 ~~~vLL~GppGtGKT-~lAraia~~l--~~~~i~v~~s 285 (498)
..-.+++||.|+||| .|.+++.+.. +..++.+++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 345788999999999 9999998755 6777777643
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0057 Score=58.62 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe--------EEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~--------~i~v~~s~l~ 288 (498)
+..|.|.|++|+||||+++.++..++.+ ...++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3568899999999999999999999876 3456666554
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0018 Score=59.88 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+.-|+|.|+||+||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999874
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0058 Score=57.93 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..++..+.|.|++|+|||++++.++..+|.+++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4455679999999999999999999999987664
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.032 Score=51.11 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||.++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988887654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0045 Score=62.22 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccc-cch----h---cccCcHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVS----K---WRGDSEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~-l~~----~---~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
...++|.||+|+||||++++++.... ...+.+.... +.- . +........+..+..+....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 45799999999999999999998763 2344444321 110 0 110011233445566667889999999985
Q ss_pred c
Q 010888 321 A 321 (498)
Q Consensus 321 ~ 321 (498)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.024 Score=64.51 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.+..-++|.||.|+||||+.+.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3456789999999999999999875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=57.66 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=27.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFN 281 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~ 281 (498)
..++.-+.|.|++|+||||+++.++..+ +.+++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3445668899999999999999999987 555443
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0071 Score=56.34 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..+.|.|++|+||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5688999999999999999998 88776644
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0016 Score=67.23 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
.-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 467899999999999999999999987766554
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.007 Score=56.30 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..+.|.|++|+|||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999877654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0051 Score=56.44 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
++.-+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44678999999999999999999876
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.059 Score=56.99 Aligned_cols=38 Identities=8% Similarity=-0.113 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 35666789999999999999999998765 456777765
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0064 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+.-+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.008 Score=55.83 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l 287 (498)
.++..++|.|++|+||||+++.++..+ |.+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 344678899999999999999999976 456777765433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0059 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 446688999999999999999999875
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.043 Score=55.28 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 35666779999999999999999998864 677776654
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.014 Score=60.59 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.+.-|+|.|+||+||||+++.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3456889999999999999999999886554
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0066 Score=61.23 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
.-++|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999976665543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0089 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
..+.|.||+|+||||+++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35789999999999999999986643
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.059 Score=49.92 Aligned_cols=61 Identities=20% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCCCccccCcHHHHHHHHHHHhc-cccCchhhccCCCCCceEEEEcCCCCcHHHHH-HHHHHH
Q 010888 214 DVKWESIKGLENAKRLLKEAVVM-PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA-KAVATE 274 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~-~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lA-raia~~ 274 (498)
..+|+++.-.+.+.+.+.+.-.. +..++...-......+++++.+|+|+|||..+ -.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 35577775556666666543110 11111110001122367999999999999873 334443
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0073 Score=59.16 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-~~~~i 280 (498)
.-++|.|+||+||||+++.+++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999974 55444
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.032 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHH-HHHH
Q 010888 252 KGILLFGPPGTGKTMLAKA-VATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAra-ia~~ 274 (498)
+++++.+|+|+|||..+-. +...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 6799999999999987433 3443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0083 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999863
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.047 Score=62.19 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~ 273 (498)
+.-++|.||.|+||||+.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999954
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0067 Score=56.55 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
..+.++|.||||+|||++|..++++.. +++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 346899999999999999999999876 6655443
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0098 Score=58.21 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..|.|.|++|+||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3568899999999999999999 678766543
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.1 Score=55.38 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=45.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc-------------------hhccc-CcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-------------------SKWRG-DSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~-------------------~~~~G-~~~~~l~~~f~~ 305 (498)
.++..|+|.|+||+||||++..+|..+ |..+..+++.-.. ....+ .........+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999876 6666666552110 00001 112222334455
Q ss_pred HHhcCCeEEEEcCccch
Q 010888 306 ARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~l 322 (498)
+......+++||-...+
T Consensus 179 ~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHTTCCEEEEEECCCC
T ss_pred HHHCCCcEEEEeCCCCc
Confidence 54455689999987554
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.024 Score=52.30 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
..-.+++||.|+|||+.+-.++.++ +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3467889999999999988888876 55555553
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.087 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
..+++.||+|||||++...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 6799999999999987665543
|
| >2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.00064 Score=57.25 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhhhhhhhhhhccccCCCcee--eeecCCCcccceeeEEEec--ccchhhhhhh
Q 010888 14 IRALTKCLKEGIITSRFIISKFIIGPPHAF--FYSFGSPPFQFSLAIQLAG--CCSVETERER 72 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 72 (498)
+..+..|++.+|.+++-+|.-|+.|.++-+ +|..|+..+..|++|.++| |..-+-|+++
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar 74 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESAR 74 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 566889999999999999999999999988 9999999999999999998 6666666655
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0094 Score=55.40 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.089 Score=54.93 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+..++.-++|.|+||+|||+++..+|... |.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 46677789999999999999999998765 677777765
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.46 E-value=0.041 Score=57.28 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999999876 4566666553
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.05 Score=56.39 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
...++|.||+|+||||+.++++..+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 35689999999999999999999873
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.04 Score=60.27 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++.++.+...+.. ..-.||+||||||||+++-.+..++ +.++..+..+
T Consensus 191 N~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 45666777665522 1247999999999998665555444 5555555543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=54.62 Aligned_cols=28 Identities=39% Similarity=0.691 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
+.|+|.||+|+|||+|++.+..+....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4589999999999999999998874333
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0099 Score=54.89 Aligned_cols=27 Identities=33% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
++.-+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999887
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.059 Score=56.95 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456678899999999999999999876
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0095 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.++.-+.|.||+|+||||+++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.072 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.++.-+.|.||+|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778999999999999999999876
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0089 Score=55.19 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+++.+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346789999999999999999998763
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.046 Score=61.19 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCch-hhccCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPK-YFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~-~~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+|+++.-.+...+.+.+.-..|..... .+.........+++.||+|+|||+++..+...
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34566655555555555543333322111 11111223357999999999999977777544
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.034 Score=59.37 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
+.-|++.|.||+||||+++.+++.+ +.+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3568899999999999999999988 455555665444
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.02 Score=52.69 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.-+.|.|++|+||||+++.++..+ +.+++..+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 34568899999999999999999876 566665544
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.049 Score=58.06 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------------c----cc--CcH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------W----RG--DSE 296 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------------~----~G--~~~ 296 (498)
..+...++|.||+|+|||+|++.++... |.+.+++...+-... + .. ...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4556779999999999999999998765 445555543221000 0 00 123
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 297 KLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 297 ~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
...+.++..+....|.+|+||=+..+
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 34455666777788999999954444
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.22 E-value=0.09 Score=51.85 Aligned_cols=72 Identities=22% Similarity=0.094 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---c-cCcHHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---R-GDSEKLIKVLFELAR 307 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~-G~~~~~l~~~f~~a~ 307 (498)
+..+++.|++|+||||++..+|..+ +..+..+++.-... . + . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999876 56666665431100 0 0 0 112233345566665
Q ss_pred hcCCeEEEEcCccch
Q 010888 308 HHAPSTIFLDEIDAI 322 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l 322 (498)
.....+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 556789999986544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.091 Score=52.39 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456778999999999999999999876 555555544
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.016 Score=61.72 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=43.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccc-cchh---c--------ccCcHHHHHHHHHHHHhcCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK---W--------RGDSEKLIKVLFELARHHAPSTIF 315 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~-l~~~---~--------~G~~~~~l~~~f~~a~~~~p~VL~ 315 (498)
.+.+++|.||+|+||||++++++..+. ...+.+.... +... . .+............+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345799999999999999999998773 3445543321 2100 0 011111223344455567899999
Q ss_pred EcCcc
Q 010888 316 LDEID 320 (498)
Q Consensus 316 IDEiD 320 (498)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99983
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.016 Score=53.88 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+++-+.|.||+|+|||+|++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.033 Score=55.12 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhccccCch---hhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 224 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.+++.+.+.+...+.... ...--..++.-+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455555555544332221 111013455678899999999999999999876
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.11 Score=58.15 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
++..++|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.021 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+...+.|.||.|+||||+++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455678899999999999999999987
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.059 Score=50.66 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.-.+++||.|+|||+.+-.++.+. +..++.+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 345689999999999888887766 666666653
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.024 Score=61.68 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.+..|+|.|.||+||||+++++++.+ |.+++.++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 34678999999999999999999999 99999887543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.017 Score=54.19 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+||||+++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455678999999999999999999976
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.019 Score=53.20 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.++.-+.|.||+|+||||+++.++....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4456788999999999999999999874
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.017 Score=52.82 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887654
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.071 Score=48.60 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKA 270 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAra 270 (498)
+++++.+|+|+|||..+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 6799999999999976543
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.021 Score=54.11 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457889999999999999999999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.02 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+++.-+.|.||+|+|||||.+.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45566789999999999999999999764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.088 Score=51.82 Aligned_cols=73 Identities=23% Similarity=0.247 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---cc-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~G-~~~~~l~~~f~~a 306 (498)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... . + .+ ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678888999999999999999866 45555554321000 0 0 01 1122234556666
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
....+.+|+||+...+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5566799999998544
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.087 Score=54.86 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=47.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh----------------cc---c-CcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~----------------~~---G-~~~~~l~~~f~ 304 (498)
.+++.+++.|++|+||||++-.+|..+ |..+..+++.-.... +. + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345788899999999999999998765 667776666421110 00 0 11223355566
Q ss_pred HHHhcCCeEEEEcCccch
Q 010888 305 LARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 305 ~a~~~~p~VL~IDEiD~l 322 (498)
.+......+++||=...+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 666556689999976443
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.0091 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.026 Score=53.40 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFN 281 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~ 281 (498)
.+.-+.|.||||+||||+++.+++.++ .+++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 445688999999999999999999986 34443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.077 Score=56.49 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHH--HHHh--CCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAV--ATEC--KTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lArai--a~~l--~~~~i~v~~ 284 (498)
..+...++|.||+|+|||||++.+ +... +..-++++.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345678999999999999999994 4433 444555554
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.024 Score=56.36 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=27.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
.++...+.|.||+|+|||||++.|+..+...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 56677899999999999999999999874333
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.026 Score=53.76 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344568899999999999999999988754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.037 Score=54.06 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 283 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~ 283 (498)
..+..-++|.||||+|||++++.++... |.+++.++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4566789999999999999999998865 44565554
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.047 Score=55.42 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhccccCch---hhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 224 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.+++.+.+.+...+.... ...--..++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4555555555544332221 111013456778999999999999999999976
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.33 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=18.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 367999999999999876554443
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.028 Score=53.54 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+-|.||||+||||+++.+++.++.+.+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 467899999999999999999999876643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.2 Score=52.02 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch-------h---------cc---c-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------K---------WR---G-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~-------~---------~~---G-~~~~~l~~~f~~a 306 (498)
++..+++.|++|+||||++..+|..+ +..+..+++.-... . +. + .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 55678889999999999999999876 45555555421110 0 00 0 1122334556666
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
+.....+++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5456689999865433
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.032 Score=50.83 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
...++||.|++|+|||++|.++..+ |..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 3579999999999999999999874 4433
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.022 Score=55.99 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l 287 (498)
.-|.|.||+|+||||+++.+++.++ ..+..+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999999875 44555665444
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.14 Score=47.53 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKA 270 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAra 270 (498)
.+++++.+|+|+|||..+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36899999999999986543
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.19 Score=47.24 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAK 269 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAr 269 (498)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 579999999999998643
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.1 Score=54.69 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~ 283 (498)
+..|++.|.||+|||++++.+++.++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45789999999999999999999874 4444444
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.0059 Score=63.85 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCccCCCcEEEEEE-eCCCCCCCHHHHh--cccceeEecCCCHH-HHHHHH
Q 010888 335 ASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAAMLR--RLEKRILVPLPDTE-ARRAMF 395 (498)
Q Consensus 335 ~~~~i~~~Ll~~ld~~~~~~~~viVIaa-Tn~p~~Ld~al~~--Rf~~~i~~~~Pd~~-eR~~IL 395 (498)
..+++++.|+..|+++..... + +++ ||+|+.||+++++ ||++.+++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 346778889999998855433 3 455 9999999999998 99999999999887 677765
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.023 Score=53.36 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=17.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHH-HHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVA-TECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia-~~l~ 276 (498)
.++.-+.|.||+|+||||+++.++ ....
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 344568899999999999999999 7653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.035 Score=51.04 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.044 Score=59.20 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 286 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s~ 286 (498)
.+..|+|.|+||+||||+|+++++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345688999999999999999999985 7788777543
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.13 Score=51.77 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
....|.|.|+||+|||+++..++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34578999999999999999998876 54444443
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.042 Score=54.64 Aligned_cols=28 Identities=18% Similarity=0.013 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3455668899999999999999999976
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.069 Score=48.28 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.-+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999876 45554444
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.18 Score=59.64 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+.|.||+|+||||+++.+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4566779999999999999999999877
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.34 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||..+-..+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 579999999999999877666544
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.044 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-+.|.||+|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999875
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.24 Score=54.48 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCCccccCcHHHHHHHHHHH-hccccCc-hhhccCCCCCceEEEEcCCCCcHHHHHHHHH-HH---hCCeEEEEec
Q 010888 214 DVKWESIKGLENAKRLLKEAV-VMPIKYP-KYFTGLLSPWKGILLFGPPGTGKTMLAKAVA-TE---CKTTFFNISA 284 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i-~~~l~~~-~~~~~~~~~~~~vLL~GppGtGKT~lAraia-~~---l~~~~i~v~~ 284 (498)
+.+|+++.=.+.+++.+.+.- ..+...+ +.+........++++.||+|+|||+.+-... +. -+...+.+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455666654444554444310 0111111 1122223446789999999999999984433 22 2455555543
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.056 Score=51.12 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.-+.|.|++|+||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999999984
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.22 Score=55.01 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHHh---CCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAK-AVATEC---KTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAr-aia~~l---~~~~i~v~~ 284 (498)
..++++.||+|+|||+.+. .+.+.+ +...+.+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 5789999999999999883 333222 555555543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.05 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
++..+.|.||+|+||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999876
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.049 Score=53.89 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-+.|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.28 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...++|.||.|+||||+.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.038 Score=52.58 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999765
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.21 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+...+.|.||||+||||+.+.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678899999999999999999765
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.24 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
+++++.+|+|+|||+.+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5799999999999987654443
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.074 Score=57.94 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++|+||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999888776654
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.24 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVA 272 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia 272 (498)
++++++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998765443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.11 Score=51.97 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-+.|.||+|+||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334678999999999999999999875
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.34 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVA 272 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia 272 (498)
+..++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999994
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.04 Score=52.44 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566779999999999999999999865
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.27 E-value=0.027 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-|.|.|++|+||||+++.+++.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999999983
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.043 Score=57.60 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999987754
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.052 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-.+|+||.|+|||+++++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999998775
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.098 Score=48.95 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v 282 (498)
+.-+.|.|++|+||||+++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3467889999999999999999988 4555443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.18 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
+++++.+|+|+|||..+-..+..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 57999999999999955444333
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.17 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.3
Q ss_pred ceEEEEcCCCCcHHHHH-HHHH
Q 010888 252 KGILLFGPPGTGKTMLA-KAVA 272 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lA-raia 272 (498)
+.+|+.||+|+|||..+ -.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999986 4444
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.038 Score=52.13 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678899999999999999999765
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.92 E-value=0.048 Score=52.05 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.12 Score=46.40 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.....+++.|++|+|||+++..+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999998754
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.17 Score=51.25 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=31.0
Q ss_pred CCCccccCcHHHHHHHHHHHhc-cccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 215 VKWESIKGLENAKRLLKEAVVM-PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~-~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.+|+++.=.+.+.+.+.+.-.. +..++...-......+++++.+|+|+|||..+-..+-
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHH
Confidence 4566665455566666542111 1111111000112236799999999999977654433
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=92.82 E-value=0.075 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.053 Score=52.47 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++.-+.|.||+|+|||||.+.++....
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45566788999999999999999998653
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.35 Score=45.91 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.-.+++||.|+|||+.+-..+.+. |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456789999999997666555544 55555554
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.061 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+ ..+.|.||+|+|||||.+.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 678899999999999999999865
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.076 Score=49.76 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
-.|-|+|..||||||+++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4688999999999999999988 898887544
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.049 Score=50.85 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+.|.||+|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.056 Score=52.23 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566789999999999999999998765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.066 Score=51.95 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++.-+.|.||+|+|||||.+.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456667899999999999999999985
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.064 Score=57.03 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
..++|.|.+|+||||+++++|++++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999974
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.059 Score=52.41 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||++.|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.06 Score=51.63 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++..+.|.||+|+|||||.+.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567889999999999999999985
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.25 Score=52.90 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
+..++|.|++|+||||+++.+++.+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3568899999999999999999987 456666665443
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.053 Score=51.30 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||.|+|||||.+.++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678999999999999999999865
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.053 Score=52.24 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.067 Score=54.30 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4555678899999999999999999865
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.054 Score=51.93 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3555678999999999999999998865
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.063 Score=52.04 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4556678899999999999999999866
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.13 Score=48.21 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
+.-+.|.|++|+||||+++.+++.++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688999999999999999999998643
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.051 Score=51.03 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678899999999999999999865
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.054 Score=54.91 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=43.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEec-cccchh-------ccc-C-------cHHHHHHHHHHHHhcC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK-------WRG-D-------SEKLIKVLFELARHHA 310 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~-s~l~~~-------~~G-~-------~~~~l~~~f~~a~~~~ 310 (498)
.+...++|.||+|+||||++++++.... ...+.+.. .++... +.- . .....+..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3456899999999999999999998763 23344432 111100 110 0 1112344555566667
Q ss_pred CeEEEEcCcc
Q 010888 311 PSTIFLDEID 320 (498)
Q Consensus 311 p~VL~IDEiD 320 (498)
|..++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8889999874
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.076 Score=57.70 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999988887654
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.28 E-value=0.094 Score=48.15 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+++.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998854
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.057 Score=51.49 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.066 Score=51.87 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566678899999999999999998855
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.086 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.-+.|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999987
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.067 Score=51.62 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||.|+|||||.+.++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678999999999999999999865
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.088 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=92.21 E-value=0.38 Score=48.13 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.....+.|.|+||+||||++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344678899999999999999998765
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=92.19 E-value=0.38 Score=49.30 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..++|.||+|+|||+|++.|++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3445689999999999999999998865
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=92.15 E-value=0.13 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+|.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999888877654
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.058 Score=52.64 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||++.++...
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455678999999999999999999865
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=92.13 E-value=0.081 Score=53.49 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
...+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.05 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+.|.|++|+||||+++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.082 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
++.|.||+|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=92.07 E-value=0.061 Score=51.67 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++..+.|.||+|+|||||.+.++....
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34556789999999999999999998653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.092 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999985
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.061 Score=52.17 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||++.++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555678899999999999999999855
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.083 Score=53.60 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4555678899999999999999999865
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.083 Score=53.68 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3555678899999999999999999865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.23 Score=58.88 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+-|.||+|+||||+++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4566778999999999999999998855
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.87 Score=40.52 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.057 Score=57.99 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s~l 287 (498)
.++..+.|.|++|+||||++++++..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3456789999999999999999999884 34545655443
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.087 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=19.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.-+.|.|++|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999987
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.082 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999999854
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.049 Score=56.78 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=20.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
...+-.++.|+||||||+++..++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3345678999999999999988875
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.55 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||..+-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 579999999999999877666544
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.086 Score=53.92 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3555678899999999999999999865
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.086 Score=53.74 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4555678899999999999999999855
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.077 Score=53.76 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.068 Score=51.43 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.069 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999866
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.12 Score=48.72 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
+.-+.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456788899999999999999997744
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.11 Score=45.02 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.25 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=16.8
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAV 271 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lArai 271 (498)
.+.+++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 356999999999999875433
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.11 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999874
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.12 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.62 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
+++++.+|+|+|||+.+-..+.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 57999999999999988776653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=91.54 E-value=0.073 Score=53.78 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4555678899999999999999999865
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=91.53 E-value=0.11 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+++.|++|+|||+++..+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.087 Score=53.71 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3455678899999999999999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=91.49 E-value=0.18 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-++|.|+.|+||||+.+.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.26 Score=47.34 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.36 Score=50.16 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchh-----hccC-CCCCceEEEEcCCCCcHHHHH
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKY-----FTGL-LSPWKGILLFGPPGTGKTMLA 268 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~-----~~~~-~~~~~~vLL~GppGtGKT~lA 268 (498)
.+|+++.=.+...+.|.+. . ...+.. +... ...++.+++.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~-g--~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM-G--FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT-T--CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc-C--CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 3577766566666666541 1 111111 1111 123478999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.34 E-value=0.13 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998643
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.18 Score=51.25 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34689999999999999999998765 556666654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.1 Score=53.49 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+||||+.+.|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4566779999999999999999999743
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.69 Score=47.61 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CceEEEEcCCCCcHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLA 268 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lA 268 (498)
.+.+++.+|+|+|||...
T Consensus 93 g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCchHHH
Confidence 478999999999999843
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.15 Score=44.26 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
....|++.|++|+|||+|+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999763
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.16 Score=44.53 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.....|++.|++|+|||+|+..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3446799999999999999999976
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.13 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
-.|++.|++|+|||++++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.13 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|++.|++|+|||+|+..+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999997743
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.098 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.12 Score=45.32 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+.|.|++|+|||+|.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.14 Score=44.98 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.098 Score=51.43 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||.|+|||||.+.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999865
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.19 Score=56.48 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.||||||||+++..+...
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999987776553
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.99 E-value=1.4 Score=49.30 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+.++|+.||+|+|||..+-..+-.. +...+.+.+
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3589999999999999886655443 655655554
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=0.14 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.14 Score=44.76 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 47999999999999999999753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=90.91 E-value=0.14 Score=44.49 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=90.89 E-value=0.18 Score=50.12 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
...+++|.|++|+|||++|.++..+ |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4578999999999999999999875 44443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.11 Score=50.34 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.. ...+.|.||+|+|||||.+.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 5678999999999999999999865
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.076 Score=53.76 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4555678899999999999999999855
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.15 Score=47.65 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-|.|.|++|+||||.++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999987
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.15 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.16 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=0.15 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999873
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=90.68 E-value=0.14 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...+.|.|+||+|||+|.+.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=90.64 E-value=0.17 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997643
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.16 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..+++.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998763
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.17 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998755
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.089 Score=52.17 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||||++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 5667789999999999999999998865
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.15 Score=44.12 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
..|++.|++|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.19 Score=47.18 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHh--CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTM-LAKAVATEC--KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~-lAraia~~l--~~~~i~v~ 283 (498)
.-.+++||-|+|||+ +.+.+.+.. +...+.++
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 346789999999999 556654332 55554443
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.16 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999863
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.15 Score=45.28 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.15 Score=53.54 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.++.-+.|.||+|+|||||+|.++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345679999999999999999999865
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=0.17 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+++.|++|+|||+|++.+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998743
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=0.11 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.++.-+.|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44456889999999999999999987
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=0.17 Score=44.58 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999999874
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.17 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.2 Score=44.63 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=90.19 E-value=3.2 Score=45.39 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
....+.+++.||+|+|||+.+-....+-+...+.+.+
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred HHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 4445789999999999997666555444545555544
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=0.18 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
-.|++.|++|+|||+|+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.17 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999875
|
| >3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.014 Score=46.76 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhhhhhhhhhcccc---CCCc--eeeeecCCCcccceeeEEEecccchhhhhhh
Q 010888 15 RALTKCLKEGIITSRFIISKFII---GPPH--AFFYSFGSPPFQFSLAIQLAGCCSVETERER 72 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (498)
..+..||+.+|.+.+-+|.-|+. |.++ +-+|..|+.+...|++|.++|-+. +-|+++
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~-~we~Ar 68 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGE-QCERAR 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCCh-hHHHHH
Confidence 35678999999999999999999 9898 668999999999999999999443 444444
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=90.11 E-value=0.16 Score=51.52 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+-|.||+|+|||||++.++.-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4556678899999999999999999855
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.2 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...++|.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=0.17 Score=44.43 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=0.17 Score=43.73 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
-.+++.|++|+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999854
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.19 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.03 E-value=0.11 Score=47.37 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=21.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
..+...+.|.|++|+|||+|.+.++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34456799999999999999998864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.02 E-value=0.19 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+...-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998743
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.25 Score=51.36 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++..+.|.||+|+|||||++.|+......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345678999999999999999999988543
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=89.97 E-value=0.19 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.18 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=89.89 E-value=0.39 Score=48.82 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
++++.+|+|+|||..+-.++... +.+.+.+.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999998887665 555555544
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=0.19 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999888754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.18 Score=44.23 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
..|++.|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999865
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.2 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.19 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...+++.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=0.38 Score=45.45 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 283 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l--~~~~i~v~ 283 (498)
....+++.|.+|+||||++..++..+ +.....++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568889999999999999999776 55555555
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.77 E-value=0.37 Score=55.99 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..+|+.||+|+|||+++-..+... +...+.+.+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 689999999999999876555443 555555544
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=89.76 E-value=0.14 Score=50.76 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
-...+|||.|++|+|||++|-.+.. -|..++
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 3457899999999999999988765 355444
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=0.19 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|++.+...-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.72 E-value=0.21 Score=43.85 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|++.|++|+|||+|+..+...-
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3579999999999999999998643
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.29 Score=49.30 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
++..+.|.||+|+|||||.+.|+......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44678999999999999999999988543
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=89.65 E-value=0.21 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.65 E-value=0.33 Score=44.64 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
|.|-|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5678999999999999999987 66666553
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=89.64 E-value=0.2 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||++++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999873
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=89.60 E-value=0.45 Score=52.31 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHH-HHHh--CCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAV-ATEC--KTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lArai-a~~l--~~~~i~v~ 283 (498)
..++++.||+|+|||+.+-.. .+.+ +...+.+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 468999999999999988433 3332 44444443
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=89.50 E-value=0.25 Score=43.47 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.38 E-value=0.25 Score=44.50 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=0.23 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.34 E-value=0.19 Score=44.50 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=89.34 E-value=0.53 Score=45.04 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
+.|.|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=89.33 E-value=0.2 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999765
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=89.27 E-value=1.2 Score=49.54 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l--------~~~~i~v~~ 284 (498)
+++++.+|+|+|||..+-..+... +.+.+.+.+
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 579999999999999877766544 455555544
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.24 Score=44.64 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
|
| >3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.23 E-value=0.36 Score=44.84 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-eEEEEeccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASS 286 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~-~~i~v~~s~ 286 (498)
.|..-++|+|.||+||+++|+.+.+.++. .+..++.++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 45677899999999999999999887753 234445444
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.23 E-value=0.24 Score=44.26 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|++.+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999998743
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=89.19 E-value=0.23 Score=44.89 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|++.|++|+|||+|+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998753
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=0.23 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
+...+++.|++|+|||+|+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999753
|
| >1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=0.21 Score=47.71 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
-+.|+|++|||||++++.+...+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367999999999999999999888665
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=0.36 Score=44.69 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l--~~~~i~v 282 (498)
+=|.|-|+.|+||||.++.+++.+ +.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 347788999999999999999988 4455443
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.12 E-value=1.1 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||..+..++.+.
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~~ 46 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKDH 46 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHH
Confidence 579999999999999988877653
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=0.31 Score=50.25 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++++.|++|+|||++++.+...+ +.+++.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4789999999999999998877654 677777765
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.06 E-value=0.17 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~ 273 (498)
....|++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999988863
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.97 E-value=0.25 Score=43.93 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998743
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.97 E-value=0.25 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
-.|++.|++|+|||+|+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998755
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=88.96 E-value=0.25 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
-.|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.93 E-value=0.27 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357999999999999999999873
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.25 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46999999999999999998864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=88.86 E-value=0.26 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999763
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=88.85 E-value=0.24 Score=43.60 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999853
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.85 E-value=0.24 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.85 E-value=0.27 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.26 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=88.83 E-value=1.3 Score=46.89 Aligned_cols=20 Identities=25% Similarity=0.234 Sum_probs=16.6
Q ss_pred CCceEEEEcCCCCcHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAK 269 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAr 269 (498)
..+.+++.+|+|+|||..+-
T Consensus 110 ~~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHH
Confidence 35789999999999998533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 498 | ||||
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 4e-82 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 4e-79 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 5e-63 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 8e-51 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 3e-36 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 1e-26 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 2e-25 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 1e-22 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 7e-20 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 1e-13 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 9e-12 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 4e-11 | |
| d1r6bx2 | 268 | c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A | 2e-08 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 2e-07 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 6e-07 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 1e-06 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 8e-06 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 1e-04 | |
| d1qvra2 | 387 | c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus | 2e-04 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 2e-04 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 6e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.001 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 0.002 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 0.002 |
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 252 bits (646), Expect = 4e-82
Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 12/247 (4%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 270
+P V ++ + G E AK LKE V +K P F + KG+LL GPPG GKT LA+A
Sbjct: 3 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61
Query: 271 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 330
VA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 62 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 121
Query: 331 -SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 387
++ + +LL++MDG + D + V+AATN P LD A+LR R +++I + PD
Sbjct: 122 GGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 180
Query: 388 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447
+ R + + E + LL +RT G+ G+D+ + EAA+ R EGR
Sbjct: 181 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR------EGR 234
Query: 448 QEVAPDD 454
+++ D
Sbjct: 235 RKITMKD 241
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 245 bits (627), Expect = 4e-79
Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 271
+ + G + AK + E V ++ P F L KG+L+ GPPGTGKT+LAKA+
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 65
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR- 330
A E K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG
Sbjct: 66 AGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125
Query: 331 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 388
H+ + ++L++MDG + +E + V+AATN P LD A+LR R +++++V LPD
Sbjct: 126 GGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 389 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 448
R + + + + ++ T G+SG+D+ + EAA+ R ++
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------NKR 238
Query: 449 EVAPDD 454
V+ +
Sbjct: 239 VVSMVE 244
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 204 bits (519), Expect = 5e-63
Identities = 93/261 (35%), Positives = 152/261 (58%), Gaps = 15/261 (5%)
Query: 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 271
P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GKT+LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 272 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331
A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I RG
Sbjct: 62 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121
Query: 332 E-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 388
+ A+ R+ ++L +MDG++ VF++ ATN P +D A+LR RL++ I +PLPD
Sbjct: 122 DGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180
Query: 389 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM--VLLEG 446
++R A+ ++ L + + + L + T G+SG+D+ + + A +R + +
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 240
Query: 447 RQ--------EVAPDDELPQI 459
R+ EV DD +P+I
Sbjct: 241 RERQTNPSAMEVEEDDPVPEI 261
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 172 bits (435), Expect = 8e-51
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 7/261 (2%)
Query: 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVAT 273
V ++ + G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 274 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 333
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTHG 118
Query: 334 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 391
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD R
Sbjct: 119 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177
Query: 392 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451
+ + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 178 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237
Query: 452 PDDELPQIGPIRPEDVEIALK 472
+ + + + +D AL
Sbjct: 238 DAEVMNSL-AVTMDDFRWALS 257
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 134 bits (339), Expect = 3e-36
Identities = 40/278 (14%), Positives = 78/278 (28%), Gaps = 29/278 (10%)
Query: 147 HVQNTSDMAV-----YEQYRTQFQGSGSTCLNGVLANVINER--LQKPLLPNFDSAETRA 199
H+ + A Y + T GS +GVL +V + L + +
Sbjct: 3 HLYDAKSFAKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFDKN 62
Query: 200 LAE---SLCRDIIRGSPDVKW--ESIKGLENAKRLLKEAVV--MPIKYPKYFTGLLS-PW 251
+ + V ++ R + + P
Sbjct: 63 AQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYA 122
Query: 252 KGILLF-GPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVLFELARH 308
G+++ G +GKT L A+ K + + +S + D + +
Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ 182
Query: 309 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368
H I +D + +I + R +LL + + S V+A+ N P
Sbjct: 183 HR--VIVIDSLKNVIGAA-GGNTTSGGISRGAFDLLSDIGAMAAS-RGCVVIASLN-PTS 237
Query: 369 ----LDAAMLR--RLEKRILVPLPDTEARRAMFESLLP 400
+ + R LV D + +
Sbjct: 238 NDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGE 275
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 108 bits (271), Expect = 1e-26
Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 27/235 (11%)
Query: 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275
+W + + LL + + + K + + L GP +GKT LA A+ C
Sbjct: 121 EWMAG--VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 178
Query: 276 KTTFFNISASSVVSK-WRGDSEKLIKVLFELA------RHHAPSTIFLDEIDAIISQRGE 328
N++ G + V+FE PS ++ +D +
Sbjct: 179 GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDG 238
Query: 329 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 385
+ E K + + N E R K+I
Sbjct: 239 SVKVNLEKKHLNKRTQIFPP-----------GIVTMN---EYSVPKTLQARFVKQIDFRP 284
Query: 386 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 440
D L + +S LL+ ++ + ++ RL
Sbjct: 285 KDYLKHCLERSEFLLEKRIIQS-GIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 102 bits (254), Expect = 2e-25
Identities = 46/261 (17%), Positives = 95/261 (36%), Gaps = 27/261 (10%)
Query: 200 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 259
A + II+ V + L++ + L+++ +P +LL GP
Sbjct: 3 YASYIMNGIIKWGDPVT----RVLDDGELLVQQT----------KNSDRTPLVSVLLEGP 48
Query: 260 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDE 318
P +GKT LA +A E F I + + + ++ + +K +F+ A S + +D+
Sbjct: 49 PHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD 108
Query: 319 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-RL 377
I+ ++ S + LL+ + + ++ T+ L +
Sbjct: 109 IERLLDYV---PIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 165
Query: 378 EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAM 434
I V P+ + E+L + + ++ +G G L+ E ++
Sbjct: 166 STTIHV--PNIATGEQLLEALELLGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 222
Query: 435 Q--PLRRLMVLLEGRQEVAPD 453
Q P R+ L +E
Sbjct: 223 QMDPEYRVRKFLALLREEGAS 243
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 95.4 bits (236), Expect = 1e-22
Identities = 26/275 (9%), Positives = 67/275 (24%), Gaps = 37/275 (13%)
Query: 230 LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV- 288
+ + ++ + LL G PG+GKT L A+ E + I +
Sbjct: 11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70
Query: 289 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346
+ + K + + ++ + + +
Sbjct: 71 QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 130
Query: 347 MDGLTQSDEL--------VFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFE 396
+ ++ L + A R + + +
Sbjct: 131 LQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLET 190
Query: 397 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 456
+ L E + YS + +S + ++
Sbjct: 191 LHKTGLFSDIRL---YNREGVKLYSSLETPSISPKETLEKELN----------------- 230
Query: 457 PQIGPIRPEDVEIALKNTRPSAHLHAHR-YEKFNA 490
+ ++++ L+ L+ H+ +F A
Sbjct: 231 ---RKVSGKEIQPTLERIEQKMVLNKHQETPEFKA 262
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 88.0 bits (217), Expect = 7e-20
Identities = 55/285 (19%), Positives = 103/285 (36%), Gaps = 32/285 (11%)
Query: 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATEC 275
+ I G +AKR + A+ + + L K IL+ GP G GKT +A+ +A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 276 KTTFFNISASSV--VSKWRGDSEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGE 328
F + A+ V + + +I+ L + A +F+DEID I ++GE
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK-ICKKGE 132
Query: 329 ARSEHEASRRLKTELLIQMDGLTQSD--------ELVFVLAA---TNLPWELDAAMLRRL 377
+ ++ +LL ++G T S ++F+ + P +L + RL
Sbjct: 133 YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL 192
Query: 378 EKRILVPLPDTEARRA----MFESLLPSQ-----TGEESLPYDLLVERTEGYSGSDIRLV 428
R+ + SL T ++ + + + +
Sbjct: 193 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 252
Query: 429 SKEAAMQPLRRLM-VLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472
++ + L +M L++ A D + I V AL
Sbjct: 253 TENIGARRLHTVMERLMDKISFSASDMNGQTVN-IDAAYVADALG 296
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 68.4 bits (166), Expect = 1e-13
Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 23/219 (10%)
Query: 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275
+ G E K+ L+ + + P + +LLFGPPG GKT LA +A E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 335
S ++ + +F+DEI + Q E
Sbjct: 60 GVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAME 112
Query: 336 SRRLK---TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 390
+ + + + A T P + A +L + + + P+ A
Sbjct: 113 DFVMDIVIGQGPAARTIRLELPRFTLIGATTR-PGLITAPLLSRFGIVEHLEYYTPEELA 171
Query: 391 RRAM-FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 428
+ M LL + EE+ + R+ G RL
Sbjct: 172 QGVMRDARLLGVRITEEAA--LEIGRRSRGTMRVAKRLF 208
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 63.3 bits (152), Expect = 9e-12
Identities = 36/262 (13%), Positives = 69/262 (26%), Gaps = 25/262 (9%)
Query: 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 271
SP + + E + L + ++ P + L G PGTGKT+ + +
Sbjct: 10 SPSYVPKRLPHREQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKL 63
Query: 272 ATECK----TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 327
K F I+ + E + R FL + + +R
Sbjct: 64 WELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 123
Query: 328 EARSEHEA-------SRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRL 377
L Q + + V+ N +
Sbjct: 124 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG 183
Query: 378 EKRILVPLPDTEARRAMFESLL---PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 434
+ I + + ++ ++ + T + D A+
Sbjct: 184 KYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 243
Query: 435 QPLRR--LMVLLEGRQEVAPDD 454
L R GR+ +AP+D
Sbjct: 244 DILYRSAYAAQQNGRKHIAPED 265
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 61.1 bits (147), Expect = 4e-11
Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 23/225 (10%)
Query: 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275
+ G EN K+ L A+ + +LL GPPG GKT LA +A+E
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVL-------DHVLLAGPPGLGKTTLAHIIASEL 59
Query: 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 335
+T S +V + GD ++ +F+DEI + E + A
Sbjct: 60 QTNIHVTSGPVLVKQ--GDMAAILT------SLERGDVLFIDEIHRLNKAVEELL--YSA 109
Query: 336 SRRLKTELLIQMDGLTQSDEL----VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 391
+ +++I +S + ++ AT L + + R + + +
Sbjct: 110 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 169
Query: 392 RAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQ 435
+ + + E +++ +R+ G IRL K
Sbjct: 170 KEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT-KRVRDM 213
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 52.7 bits (126), Expect = 2e-08
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 249 SPWKGILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSE 296
LL G G GKT +A+ +A +C +I + +K+RGD E
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96
Query: 297 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQS 353
K K L + S +F+DEI II + + +A+ +K L I++ G T
Sbjct: 97 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 156
Query: 354 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 400
E + E D A+ RR +K + P E + L P
Sbjct: 157 QEFSNIF-------EKDRALARRFQKIDITE-PSIEETVQIINGLKP 195
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 29/275 (10%), Positives = 66/275 (24%), Gaps = 49/275 (17%)
Query: 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 277
++ L + + + G G GKT LAK
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLS---DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72
Query: 278 TFFNISASSVVSKWRG--------------------------DSEKLIKVLFEL-ARHHA 310
+ + + ++K L + +
Sbjct: 73 AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132
Query: 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL- 369
+ LDE +++S A + R+ E+ + + V + +
Sbjct: 133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG--VNRIGFLLVASDVRALSYMR 190
Query: 370 --DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD---LLVERTEGYSGS- 423
+ ++ ++ +P + + E + L+ + G
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250
Query: 424 ----DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 454
+ K A M GR ++ D
Sbjct: 251 GSARRAIVALKMACE------MAEAMGRDSLSEDL 279
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 49.4 bits (117), Expect = 6e-07
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSP--WKGILLFGPPGTGKTMLAKAVATECKTTF 279
G +AKR + A+ + + L K IL+ GP G GKT +A+ +A F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 280 FNISASSVVSKWRG----DSEKLIKVLFELARHH 309
+ A+ G + + +I+ L + A
Sbjct: 78 IKVEATKFT--EVGYVGKEVDSIIRDLTDSAMKL 109
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 216 KWESIKGLENAKRLLKEAVVM-----PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 270
+ + G + + LK + + ++ +L+GPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 271 VATECKTTFFNISASSVVSKWRGDS 295
VA E +AS V SK ++
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNA 96
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 45.3 bits (106), Expect = 8e-06
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 273
I G E+ K L V P G+ G+L+FG GTGK+ +A+A
Sbjct: 9 IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALAA 50
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 11/111 (9%)
Query: 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275
++ E LK P P LL+GP GTGK A+
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESI 57
Query: 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326
V + KL + H + + D I+ Q
Sbjct: 58 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQE 108
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 41.6 bits (97), Expect = 2e-04
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)
Query: 254 ILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGD-SEKLIK 300
+L G PG GKT + + +A + + + +K+RG+ E+L
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 301 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360
V+ E+ + +F+DE+ ++ G+A +A LK L EL +
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPAL--------ARGELRLIG 156
Query: 361 AATNLPWEL---DAAMLRRLEKRILVPLPDTEARRAM 394
A T + D A+ RR + + E +
Sbjct: 157 ATTLDEYREIEKDPALERRFQPVYVDEPTVEETISIL 193
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 309
K + + G +GK++L +A TT V + G E+ ++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 39.8 bits (92), Expect = 6e-04
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI------SASSVVSKWRGDSEKLIKVLF 303
ILL GP G+GKT++A+ +A A V +L++
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 304 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 347
+ +F+DEID I + S + L+++
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 170
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.6 bits (86), Expect = 0.001
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 307
+LL G PG+GK+ +A+A+A + + + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 37.6 bits (87), Expect = 0.002
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 254 ILLFGPPGTGKTMLAKAV--------ATECKTTFFNISASSVVSKWRG-------DSEKL 298
+L+ G G GK ++A+ + +I ++ G +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 299 IKVLFELARHHAPSTIFLDEIDAI 322
+ FELA T+FLDEI +
Sbjct: 86 KEGFFELADG---GTLFLDEIGEL 106
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 37.8 bits (86), Expect = 0.002
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 8/119 (6%)
Query: 237 PIKYPKYFTG-------LLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288
P K F L L+ G TGK+ + K E + +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 347
+ + + L + L + I +E + + K L
Sbjct: 67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN 125
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.9 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.88 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.87 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.82 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.78 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.75 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.75 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.7 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.68 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.62 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.62 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.6 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.58 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.58 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.53 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.51 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.51 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.5 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.46 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.41 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.4 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.37 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.33 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.04 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.89 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.86 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.33 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.96 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.93 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.85 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.81 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.77 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.65 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.65 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.63 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.59 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.55 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.53 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.53 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.51 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.42 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.4 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.36 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.33 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.3 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.26 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.26 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.25 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.18 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.16 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.15 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.15 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.15 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.13 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.13 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.13 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.12 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.12 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.09 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.08 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.08 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.04 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.02 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.98 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.98 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.88 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.87 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.86 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.79 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.69 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.66 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.6 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.59 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.55 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.55 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.46 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.45 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 96.4 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.39 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.31 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.17 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.16 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.08 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.08 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.04 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.91 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 95.88 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 95.78 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.69 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 95.69 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.68 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.51 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.45 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.37 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.29 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 95.17 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.16 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.03 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 95.03 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.01 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.92 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.78 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 94.77 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.7 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.69 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.62 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.56 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.53 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.48 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 94.3 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.23 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.11 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.1 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.09 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.07 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.98 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.77 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.54 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.3 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.29 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.27 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.23 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.07 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.03 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 92.9 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.9 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.82 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.79 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 92.78 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 92.77 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.74 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.7 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 92.56 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.48 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 92.45 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.39 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 92.37 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.34 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.29 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 92.25 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.22 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 92.2 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 92.08 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 92.03 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 92.03 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.99 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.84 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.69 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.5 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.46 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 91.45 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 91.28 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.23 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.2 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.15 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.07 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.01 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 90.94 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.8 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.68 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.58 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.53 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.41 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.4 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.4 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.27 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.22 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.07 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.05 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.0 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.89 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.82 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 89.58 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.51 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.47 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.41 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.4 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.2 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.17 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 88.81 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 88.8 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.79 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 88.77 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 88.76 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.63 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.62 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.51 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.39 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 88.36 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.34 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.24 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.19 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 88.12 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.01 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 87.54 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 87.53 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.26 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.05 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 86.94 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 86.86 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 86.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 86.82 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 86.71 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.3 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.21 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.08 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.07 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 85.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 85.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 85.17 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.98 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.97 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 83.41 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 83.4 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.35 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.74 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.67 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 81.57 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 81.41 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 81.01 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-40 Score=321.54 Aligned_cols=245 Identities=33% Similarity=0.527 Sum_probs=214.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...++++|+||+|++++|++|.+.+.. +.+++.+... ..+++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 4 ~~~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~ 82 (256)
T d1lv7a_ 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (256)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred CCCCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhh
Confidence 456889999999999999999997654 6677777664 67789999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
+.|.|++++.++.+|+.|+...||||||||+|.+++.++... ..+....++++.|+..++++... .+|+||+|||.|+
T Consensus 83 ~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~-~~v~vIatTn~~~ 161 (256)
T d1lv7a_ 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPD 161 (256)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTT
T ss_pred hcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCcc
Confidence 999999999999999999999999999999999998775432 23344567889999999988654 4599999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|++++| ||+..+++++|+.++|..|++.++.+.....+.++..+++.|.||+++||..++++|...++++
T Consensus 162 ~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~------ 235 (256)
T d1lv7a_ 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (256)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred cCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999997 9999999999999999999999999998888899999999999999999999999998887763
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
+ ...|+.+||++|++++
T Consensus 236 ~------------~~~i~~~d~~~Al~rv 252 (256)
T d1lv7a_ 236 N------------KRVVSMVEFEKAKDKI 252 (256)
T ss_dssp T------------CSSBCHHHHHHHHHHH
T ss_pred C------------CCccCHHHHHHHHHHH
Confidence 1 1238999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.3e-40 Score=320.10 Aligned_cols=241 Identities=37% Similarity=0.583 Sum_probs=209.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
+.|+++|+||+|++++|++|.+.+. ++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 2 ~~p~~~~~di~G~~~~k~~l~~~i~-~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 2 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80 (247)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCcHHHHccHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 4689999999999999999998654 57777766654 677789999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
+|+|++++.++.+|+.|+..+|+||||||+|.++.++.... .......++++.|+..|+++... .+|+||+|||.|+.
T Consensus 81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~-~~vivi~tTn~~~~ 159 (247)
T d1ixza_ 81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPDI 159 (247)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT-CCEEEEEEESCGGG
T ss_pred ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCccc
Confidence 99999999999999999999999999999999988765432 23344567889999999988544 45899999999999
Q ss_pred CCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 010888 369 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 446 (498)
Q Consensus 369 Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~ 446 (498)
+|++++| ||+..+++++|+.++|.+||+.++.......+.+++.+++.|.||+++||..+|++|+..++++ +
T Consensus 160 ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~------~ 233 (247)
T d1ixza_ 160 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------G 233 (247)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------T
T ss_pred cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc------C
Confidence 9999996 9999999999999999999999999888888899999999999999999999999999887663 1
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 447 RQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 447 ~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
. ..|+++||++|+
T Consensus 234 ~------------~~i~~~d~~~A~ 246 (247)
T d1ixza_ 234 R------------RKITMKDLEEAA 246 (247)
T ss_dssp C------------SSBCHHHHHHHT
T ss_pred C------------CCcCHHHHHHhh
Confidence 0 239999999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.9e-40 Score=322.59 Aligned_cols=255 Identities=34% Similarity=0.573 Sum_probs=220.8
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhccc
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 293 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G 293 (498)
++|+||+|++++|++|++.+..|+.+++.+... ..+++++|||||||||||++|+++|++++.+++.++++.+.+.+.|
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g 80 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 80 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence 579999999999999999999999999988875 6788999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHH
Q 010888 294 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 373 (498)
Q Consensus 294 ~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al 373 (498)
.....++.+|..|+..+|+||||||+|.+++++.... ++..+.+...++..+++... ..+|+||+|||.|+.+|+++
T Consensus 81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~--~~~~~~~~~~~~~~~~~~~~-~~~vlvi~tTn~~~~ld~al 157 (258)
T d1e32a2 81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPAL 157 (258)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCC--CTTHHHHHHHHHHHHHTCCC-SSCEEEEEEESCGGGSCGGG
T ss_pred cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCC--CchHHHHHHHhccccccccc-cCCccEEEeCCCccccchhh
Confidence 9999999999999999999999999999998875432 23346677888888887654 44599999999999999999
Q ss_pred Hh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 374 LR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 374 ~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
+| ||+..+++++|+.++|..||+.+++......+.++..|+++|+||+++||..+|++|...+++|....++......
T Consensus 158 ~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~ 237 (258)
T d1e32a2 158 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237 (258)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCC
T ss_pred hhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 98 9999999999999999999999999888888889999999999999999999999999999988665544322111
Q ss_pred CCCCCCCCCCCCHHHHHHHHhc
Q 010888 452 PDDELPQIGPIRPEDVEIALKN 473 (498)
Q Consensus 452 ~~~~~~~~~~It~eD~~~AL~~ 473 (498)
..+ .....+++++||+.||.+
T Consensus 238 ~~~-~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 238 DAE-VMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp BHH-HHHHCCBCHHHHHHHHTC
T ss_pred hhh-hhccCccCHHHHHHHhCc
Confidence 100 011345999999999964
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.1e-38 Score=308.05 Aligned_cols=229 Identities=38% Similarity=0.718 Sum_probs=199.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.|+.+|+||+|++++|++|.+.+..++.+++.+... ..+++++|||||||||||++|+++|++++.+++.++++++.+.
T Consensus 1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~ 80 (265)
T d1r7ra3 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 80 (265)
T ss_dssp CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence 378999999999999999999999999888877654 6778899999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|..+..++.+|..|+...||||+|||+|.++..+.... ......+++.+.++..++++.... +++||+|||.++.|
T Consensus 81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vi~ttn~~~~l 159 (265)
T d1r7ra3 81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGATNRPDII 159 (265)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-------CCEEEECCBSCTTT
T ss_pred cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCchhC
Confidence 9999999999999999999999999999999998765332 223445678899999998875543 48899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
|++++| ||+..+++++|+.++|.+||+.++++.....+.+++.++++|.||+++||..+|++|...++++..
T Consensus 160 d~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~ 233 (265)
T d1r7ra3 160 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 233 (265)
T ss_dssp SCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999997 999999999999999999999999988888889999999999999999999999999999988744
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.90 E-value=1e-24 Score=210.86 Aligned_cols=199 Identities=18% Similarity=0.234 Sum_probs=141.7
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccC
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 294 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~ 294 (498)
+-.+.|+|..+..+.+.+.........+ ..-..|+++|||+||||||||++|+++|++++.+++.+++++....+.+.
T Consensus 6 ~~~~~~i~~~~~i~~i~~~~~~~~~~~~--~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~ 83 (246)
T d1d2na_ 6 YIMNGIIKWGDPVTRVLDDGELLVQQTK--NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET 83 (246)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHHHHHHH--HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHH
T ss_pred hhccCCcCcCHHHHHHHHHHHHHHHHHh--ccCCCCCeEEEEECcCCCCHHHHHHHHhhccccccccccccccccccccc
Confidence 3445677766655555554443332211 21245678999999999999999999999999999999998876665554
Q ss_pred c-HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHH-
Q 010888 295 S-EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA- 372 (498)
Q Consensus 295 ~-~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~a- 372 (498)
. .+.++.+|+.|+..+||||||||+|.+...+.... ...+.+.+.++..+++......+|+||+|||+|+.++++
T Consensus 84 ~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~ 160 (246)
T d1d2na_ 84 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 160 (246)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred chhhhhhhhhhhhhhcccceeehhhhhhHhhhccccc---chhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchh
Confidence 4 46689999999999999999999999987654321 223567788999999887777789999999999999875
Q ss_pred HHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 010888 373 MLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421 (498)
Q Consensus 373 l~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s 421 (498)
+++||+..+++|.+ .+|.++++.+... ....+.++..+++.+.|.+
T Consensus 161 ~~~rF~~~i~~P~~--~~r~~il~~l~~~-~~~~~~~~~~i~~~~~g~~ 206 (246)
T d1d2na_ 161 MLNAFSTTIHVPNI--ATGEQLLEALELL-GNFKDKERTTIAQQVKGKK 206 (246)
T ss_dssp CTTTSSEEEECCCE--EEHHHHHHHHHHH-TCSCHHHHHHHHHHHTTSE
T ss_pred hcCccceEEecCCc--hhHHHHHHHHHhc-cCCChHHHHHHHHHcCCCc
Confidence 56699988887544 3444444432211 1122334566777766643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.88 E-value=1.3e-22 Score=202.25 Aligned_cols=180 Identities=22% Similarity=0.297 Sum_probs=142.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc--hhcccC
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--SKWRGD 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~--~~~~G~ 294 (498)
.|+|++++++.+...+..++++....... ..|++++||+||||||||++|+++|++++.+++.++++++. +.+.|.
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 48999999999998886544433322211 24668999999999999999999999999999999999997 457889
Q ss_pred cHHHHHHHHHHHHhc-----CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC-------CCcEEEEEE
Q 010888 295 SEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------DELVFVLAA 362 (498)
Q Consensus 295 ~~~~l~~~f~~a~~~-----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~-------~~~viVIaa 362 (498)
++..++.+|..+... +||||||||+|++.+.+..... ......+++.|+..+++.... ..++++|++
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~-~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ 173 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 173 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhhhccCccc-chhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEec
Confidence 999999999887642 5799999999999987655432 222345778899999975321 223556666
Q ss_pred ----eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 363 ----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 363 ----Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
++.+..++|+++.||+..+.++.|+..++.+|+....
T Consensus 174 ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~ 214 (309)
T d1ofha_ 174 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPH 214 (309)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSST
T ss_pred cchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHH
Confidence 5778889999999999999999999999999987643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.87 E-value=3.9e-24 Score=212.92 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=122.7
Q ss_pred CchhhccC-CCCCceE-EEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEE
Q 010888 240 YPKYFTGL-LSPWKGI-LLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF 315 (498)
Q Consensus 240 ~~~~~~~~-~~~~~~v-LL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~ 315 (498)
.+..+..+ ...++++ |++||||||||++|+++|.+++ .+|+.++++++.++|+|++++.++.+|+.++. |+|||
T Consensus 110 ~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~ilf 187 (321)
T d1w44a_ 110 SPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIV 187 (321)
T ss_dssp CCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSEEE
T ss_pred chHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccEEE
Confidence 44444444 3445565 5589999999999999999985 78999999999999999999999999999985 79999
Q ss_pred EcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC----HHHHh--cccceeEecCCCHH
Q 010888 316 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD----AAMLR--RLEKRILVPLPDTE 389 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld----~al~~--Rf~~~i~~~~Pd~~ 389 (498)
|||+|.+.+.++.... +....+++++++..||++.... +|+||+|||+ +.++ +++.+ ||+..++++.|+.+
T Consensus 188 ~DEid~~~~~r~~~~~-~~~~~r~v~~lL~e~dg~~~~~-~v~viaatN~-~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~ 264 (321)
T d1w44a_ 188 IDSLKNVIGAAGGNTT-SGGISRGAFDLLSDIGAMAASR-GCVVIASLNP-TSNDDKIVELVKEASRSNSTSLVISTDVD 264 (321)
T ss_dssp EECCTTTC------------CCHHHHHHHHHHHHHHHHH-TCEEEEECCC-CCCCHHHHHHHHHHHHHSCSEEEEECSST
T ss_pred eehhhhhccccccCCC-CCcchhhhhhhhhhccccccCC-CeEEEEeCCC-cccccchhhhhhccCcccceeecCCCChH
Confidence 9999999998865433 3334578999999999886544 5889999994 5444 44455 99999999999999
Q ss_pred HHHHHHHHhcCCC
Q 010888 390 ARRAMFESLLPSQ 402 (498)
Q Consensus 390 eR~~IL~~~l~~~ 402 (498)
.|..||+.+....
T Consensus 265 ~r~~il~~~~~~~ 277 (321)
T d1w44a_ 265 GEWQVLTRTGEGL 277 (321)
T ss_dssp TEEEEEEECBTTC
T ss_pred HHHHHHHHhccCc
Confidence 9999998776554
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=2.7e-20 Score=177.46 Aligned_cols=214 Identities=17% Similarity=0.171 Sum_probs=150.6
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhccc
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 293 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G 293 (498)
+.+|++++|++++++.|..++..... ...+..++|||||||||||++|+++|++++.+++.+++.+....
T Consensus 5 P~~~~divGqe~~~~~l~~~i~~~~~-------~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~--- 74 (238)
T d1in4a2 5 PKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--- 74 (238)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH---
T ss_pred CCcHHHcCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccH---
Confidence 56899999999999999998865322 12344689999999999999999999999999999998766422
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC---------------ccCCCcEE
Q 010888 294 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL---------------TQSDELVF 358 (498)
Q Consensus 294 ~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~---------------~~~~~~vi 358 (498)
..+...+.. ....++++|||+|.+.... .+.++..++.. .....+++
T Consensus 75 ---~~~~~~~~~--~~~~~~~~ide~~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (238)
T d1in4a2 75 ---GDMAAILTS--LERGDVLFIDEIHRLNKAV-------------EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 136 (238)
T ss_dssp ---HHHHHHHHH--CCTTCEEEEETGGGCCHHH-------------HHHHHHHHHTSCCCC---------------CCCE
T ss_pred ---HHHHHHHHh--hccCCchHHHHHHHhhhHH-------------HhhcccceeeeeeeeeecCcccccccccCCCCeE
Confidence 233334333 3345899999999985432 22233333211 11234578
Q ss_pred EEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
+|++||.+..+++++++||...+.++.|+.+++..+++..+.......+. .++.+++.+.| +.+.+.++++.+...+.
T Consensus 137 ~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~~ 215 (238)
T d1in4a2 137 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLT 215 (238)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776665443 36667766655 44554455544432221
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 438 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 438 rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
.. . . ..||.+++.+++..+
T Consensus 216 ~~------~------~------~~it~~~~~~al~~l 234 (238)
T d1in4a2 216 VV------K------A------DRINTDIVLKTMEVL 234 (238)
T ss_dssp HH------T------C------SSBCHHHHHHHHHHH
T ss_pred Hh------c------C------CccCHHHHHHHHHhh
Confidence 11 0 0 128999999988754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=2.3e-19 Score=171.18 Aligned_cols=216 Identities=19% Similarity=0.149 Sum_probs=146.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 292 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~ 292 (498)
++.+|+|++|+++++++|+.++..... ...++.++||+||||||||++|+++|++++.++..++++.....
T Consensus 4 RP~~~ddivGq~~~~~~L~~~i~~~~~-------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~-- 74 (239)
T d1ixsb2 4 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-- 74 (239)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHHTT-------SSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccc--
Confidence 467899999999999999998865432 12345789999999999999999999999999999998765321
Q ss_pred cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC---------------ccCCCcE
Q 010888 293 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL---------------TQSDELV 357 (498)
Q Consensus 293 G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~---------------~~~~~~v 357 (498)
.......... ....++++|||+|.+... ....++..++.. .....++
T Consensus 75 ----~~~~~~~~~~-~~~~~i~~iDe~~~~~~~-------------~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (239)
T d1ixsb2 75 ----GDLAAILANS-LEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 136 (239)
T ss_dssp ----HHHHHHHHTT-CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCC
T ss_pred ----hhhHHHHHhh-ccCCCeeeeecccccchh-------------HHHhhhhhhhhhhhhhhhccchhhhhcccCCCCE
Confidence 1122222211 123479999999988543 222233333211 1123346
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQP 436 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~a 436 (498)
+++++|+.+....++.++|+...+.+..|+.+++..+++..+.......+. .++.++..+.| ..+...++++.+...
T Consensus 137 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~~~~- 214 (239)
T d1ixsb2 137 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF- 214 (239)
T ss_dssp EEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHHHHH-
T ss_pred EEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHHHHH-
Confidence 788888888887777888888899999999999999999888776655432 46667777776 333333333322111
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 437 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 437 ~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
. . ..+ ...||.+++.++|..+
T Consensus 215 -------a----~-~~~-----~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 215 -------A----Q-VAG-----EEVITRERALEALAAL 235 (239)
T ss_dssp -------H----T-TSC-----CSCBCHHHHHHHHHHH
T ss_pred -------H----H-HhC-----CCCcCHHHHHHHHhhh
Confidence 0 1 111 1239999999998754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=2e-18 Score=163.02 Aligned_cols=209 Identities=18% Similarity=0.185 Sum_probs=141.0
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----eEEEEecc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNISAS 285 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-----~~i~v~~s 285 (498)
...+.+|+|++|++++++.|+.++... ...++||+||||||||++|+++|++++. .++..+.+
T Consensus 7 kyrP~~~~divg~~~~~~~L~~~i~~~------------~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~ 74 (227)
T d1sxjc2 7 KYRPETLDEVYGQNEVITTVRKFVDEG------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 74 (227)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEeccc
Confidence 356789999999999999999987431 1236999999999999999999999742 35666665
Q ss_pred ccchhcccCcHHHHHHHHH-HHH-----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 286 SVVSKWRGDSEKLIKVLFE-LAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~-~a~-----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
+..+.. ....... ... .....+++|||+|.+... ..+.|+..++.. ...+++
T Consensus 75 ~~~~~~------~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~-------------~~~~Ll~~le~~---~~~~~~ 132 (227)
T d1sxjc2 75 DDRGID------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TKNTRF 132 (227)
T ss_dssp SCCSHH------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTTEEE
T ss_pred ccCCee------eeecchhhccccccccCCCeEEEEEeccccchhh-------------HHHHHHHHhhhc---ccceee
Confidence 543221 1111111 111 123459999999988533 345566666533 345778
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
+.+||.+..+.+++++|+ ..+.|+.|+.++...++...+....... +..++..+++.+ .+.+|+
T Consensus 133 ~~~~~~~~~i~~~i~sr~-~~i~~~~~~~~~i~~~l~~I~~~e~i~i--------------~~~~l~~i~~~s-~Gd~R~ 196 (227)
T d1sxjc2 133 CVLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKL--------------SPNAEKALIELS-NGDMRR 196 (227)
T ss_dssp EEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCB--------------CHHHHHHHHHHH-TTCHHH
T ss_pred ccccCcHHHhHHHHHHHH-hhhccccccccccccccccccccccccC--------------CHHHHHHHHHHc-CCcHHH
Confidence 889999999999999999 5689999999999999998876654432 223333333332 345666
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
+++.++......... ....|+.+++.+++.
T Consensus 197 ain~Lq~~~~~~~~~---~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 197 VLNVLQSCKATLDNP---DEDEISDDVIYECCG 226 (227)
T ss_dssp HHHHTTTTTTTTCSS---SCCCBCHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCC---CCCeeCHHHHHHHhC
Confidence 677776543322221 223499999998874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.75 E-value=6.8e-18 Score=159.91 Aligned_cols=181 Identities=21% Similarity=0.182 Sum_probs=128.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEE
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 282 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v 282 (498)
+.....+.+|+||+|++.+++.|+.++... ...++||+||||||||++|+++|++++ .+++++
T Consensus 14 w~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~ 81 (231)
T d1iqpa2 14 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL 81 (231)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEE
Confidence 344556779999999999999999987542 224799999999999999999999874 478888
Q ss_pred eccccchhcccCcHHHHHHHH--HHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLF--ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f--~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
++++..+... ......... .......+.|+++||+|.+... ....|+..++. ...++.+|
T Consensus 82 n~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~-------------~~~~ll~~l~~---~~~~~~~i 143 (231)
T d1iqpa2 82 NASDERGINV--IREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEM---FSSNVRFI 143 (231)
T ss_dssp ETTCHHHHHT--THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEEEE
T ss_pred ecCcccchhH--HHHHHHHHHhhhhccCCCceEEeehhhhhcchh-------------HHHHHhhhccc---CCcceEEE
Confidence 8876543211 111111111 1112345689999999988543 23445555542 33457789
Q ss_pred EEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcC
Q 010888 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 419 (498)
Q Consensus 361 aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g 419 (498)
++||.+..+++++++|+ ..+.++.|+..+...+++..+....... +..++.+++.+.|
T Consensus 144 ~~~n~~~~i~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g 202 (231)
T d1iqpa2 144 LSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 202 (231)
T ss_dssp EEESCGGGSCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred eccCChhhchHhHhCcc-ccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999 5699999999999999999887665542 2234556655544
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.5e-17 Score=158.94 Aligned_cols=205 Identities=22% Similarity=0.266 Sum_probs=138.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
+..+.+|+|++|++++++.|+.++.. ...++++||+||||||||++|++++++++.+
T Consensus 5 KyrP~~~~dlig~~~~~~~L~~~i~~-----------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~ 73 (239)
T d1njfa_ 5 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 73 (239)
T ss_dssp HTCCSSGGGSCSCHHHHHHHHHHHHT-----------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred hhCCCCHHHccChHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccch
Confidence 35678999999999999999988753 2345679999999999999999999987322
Q ss_pred ------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 279 ------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 279 ------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
++.++.++.. ....++.+.+.+.. ....|++|||+|.|. ...++.
T Consensus 74 ~~~~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~-------------~~~q~~ 134 (239)
T d1njfa_ 74 NCREIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNA 134 (239)
T ss_dssp HHHHHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-------------HHHHHH
T ss_pred HHHHHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccCC-------------HHHHHH
Confidence 3444443221 12334555554432 234599999999984 234567
Q ss_pred HHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCc
Q 010888 343 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYS 421 (498)
Q Consensus 343 Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s 421 (498)
|+..|+. ....+.+|++||.+..+.+++++|| ..+.++.|+.++...++...+.......+ ..++.+++.+.|
T Consensus 135 Llk~lE~---~~~~~~~il~tn~~~~i~~~i~SRc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G-- 208 (239)
T d1njfa_ 135 LLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-- 208 (239)
T ss_dssp HHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT--
T ss_pred HHHHHhc---CCCCeEEEEEcCCccccChhHhhhh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC--
Confidence 8888873 3345778889999999999999999 66899999999988888887755443322 224444444443
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
.+|++++.++...... . ..|+.+++.++|.
T Consensus 209 --------------d~R~ain~l~~~~~~~--~-----~~I~~~~v~~~lg 238 (239)
T d1njfa_ 209 --------------SLRDALSLTDQAIASG--D-----GQVSTQAVSAMLG 238 (239)
T ss_dssp --------------CHHHHHHHHHHHHHHT--T-----TSBCHHHHHHHHT
T ss_pred --------------CHHHHHHHHHHHHHhC--C-----CCcCHHHHHHHhC
Confidence 3333333333221111 1 1289999988874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=6.4e-17 Score=154.69 Aligned_cols=199 Identities=20% Similarity=0.180 Sum_probs=127.2
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCch-hh----ccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPK-YF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~-~~----~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
...+.+|++++|.+..+++|++++..+..... .+ .......+++||+||||||||++|+++|++++.+++.++++
T Consensus 7 ky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~ 86 (253)
T d1sxja2 7 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 86 (253)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 35677899999999999999998865321111 11 11234456899999999999999999999999999999998
Q ss_pred ccchhcccCcHHHHHH--------------HHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 286 SVVSKWRGDSEKLIKV--------------LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~--------------~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+..+..... ..+.. .........+.++++||+|.+....+. ....++....
T Consensus 87 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~----------~~~~~~~~~~--- 151 (253)
T d1sxja2 87 DVRSKTLLN--AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCR--- 151 (253)
T ss_dssp SCCCHHHHH--HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHH---
T ss_pred cchhhHHHH--HHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhh----------hhHHHhhhhc---
Confidence 765432100 00000 000011234579999999998654321 1222333332
Q ss_pred cCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 352 QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
.....++++++++....++ .+++|+ ..+.|+.|+.+++..+++.++...... .+..++.+++.+.| |++.++.
T Consensus 152 ~~~~~ii~i~~~~~~~~~~-~l~~~~-~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~G----DiR~ai~ 225 (253)
T d1sxja2 152 KTSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVIN 225 (253)
T ss_dssp HCSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHH
T ss_pred ccccccccccccccccccc-ccccee-eeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCC----cHHHHHH
Confidence 2223455555555544555 355455 779999999999999999988654443 23346777777654 6655443
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=5.5e-16 Score=146.09 Aligned_cols=174 Identities=14% Similarity=0.101 Sum_probs=123.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----eEEEEecc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNISAS 285 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-----~~i~v~~s 285 (498)
...+.+|+|++|++++++.|+.++... ...++||+||||||||++|+.+|++++. .++.++++
T Consensus 8 KyrP~~~~d~ig~~~~~~~L~~~~~~~------------~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~ 75 (224)
T d1sxjb2 8 KYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 75 (224)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCeEEEECCCCCCchhhHHHHHHHHhcccccccccccccc
Confidence 467889999999999999999987431 1246999999999999999999999853 47788877
Q ss_pred ccchhcccCcHHHHHHHHHHHH-------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 286 SVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~-------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
+..+. ..+...+.... ...+.+++|||+|.+... .++.|+..++ .......
T Consensus 76 ~~~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~-------------~~~~ll~~~e---~~~~~~~ 133 (224)
T d1sxjb2 76 DDRGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTME---LYSNSTR 133 (224)
T ss_dssp SCCSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHH---HTTTTEE
T ss_pred ccCCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccchh-------------HHHHHhhhcc---cccccee
Confidence 65432 22222222221 123469999999988643 3344555554 2334467
Q ss_pred EEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
++.+|+....+.+++++|| ..+.|+.|+.++...++...+.......+ ..++.++..+.|
T Consensus 134 ~i~~~~~~~~i~~~l~sr~-~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G 194 (224)
T d1sxjb2 134 FAFACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 194 (224)
T ss_dssp EEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred eeeccCchhhhhhHHHHHH-HHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC
Confidence 7888888889999999999 56999999999999999988865544422 124444444443
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.1e-15 Score=144.37 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=121.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCeEEEEec
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISA 284 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------~~~~i~v~~ 284 (498)
...+.+|++++|++++++.|+.++.. ....++||+||||||||++++++++++ ....+.+++
T Consensus 5 ky~P~~~~diig~~~~~~~l~~~i~~------------~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~ 72 (237)
T d1sxjd2 5 KYRPKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 72 (237)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheec
Confidence 35678999999999999999887642 112469999999999999999999986 566777777
Q ss_pred cccchhcc-cCcHHHHH---------HHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 285 SSVVSKWR-GDSEKLIK---------VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 285 s~l~~~~~-G~~~~~l~---------~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
+...+... ....+... ............||+|||+|.+... ..+.++..++. ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~-------------~~~~l~~~~~~---~~ 136 (237)
T d1sxjd2 73 SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTMET---YS 136 (237)
T ss_dssp SSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHHH---TT
T ss_pred cccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHH-------------HHHHHhhcccc---cc
Confidence 65532211 11000000 0011111223459999999988543 22334444432 22
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
....+|.+++....+.+++++|| ..+.|+.|+.++...+|+..+.......+ ..++.+++.+.|
T Consensus 137 ~~~~~i~~~~~~~~~~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g 201 (237)
T d1sxjd2 137 GVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 201 (237)
T ss_dssp TTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred ccccccccccccccccccccchh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC
Confidence 34567778888888999999999 67899999999999999998876655433 235666666654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=3.3e-15 Score=142.38 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=113.8
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEecccc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 287 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l 287 (498)
...+.+|++++|.+++++.|+.++... ....++||+||||||||++|+++|+++. .....++....
T Consensus 4 ky~P~~~~diig~~~~~~~L~~~~~~~-----------~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~ 72 (252)
T d1sxje2 4 KYRPKSLNALSHNEELTNFLKSLSDQP-----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 72 (252)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred ccCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccc
Confidence 456788999999999999998765321 1234799999999999999999999861 11111111000
Q ss_pred c---------------------hhccc-CcHHHHHHHHHHHH--------------hcCCeEEEEcCccchhhhccccch
Q 010888 288 V---------------------SKWRG-DSEKLIKVLFELAR--------------HHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 288 ~---------------------~~~~G-~~~~~l~~~f~~a~--------------~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
. ....+ .............. .....+++|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~------ 146 (252)
T d1sxje2 73 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD------ 146 (252)
T ss_dssp ----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH------
T ss_pred cccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccc------
Confidence 0 00000 01111111111111 122459999999988432
Q ss_pred hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC--CCCC
Q 010888 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLP 409 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~--~~~~ 409 (498)
..+.++..++. ...++.+|++||.++.+.+++++|| ..++|+.|+.++...++...+...... .+..
T Consensus 147 -------~~~~l~~~~e~---~~~~~~~Il~tn~~~~i~~~l~sR~-~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~ 215 (252)
T d1sxje2 147 -------AQAALRRTMEK---YSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDI 215 (252)
T ss_dssp -------HHHHHHHHHHH---STTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHH
T ss_pred -------cchhhhccccc---ccccccceeeeccccchhhhhhcch-heeeecccchhhHHHHHHHHHHHcCCCCCcHHH
Confidence 33445555542 3345778889999999999999999 579999999999999998887654432 2223
Q ss_pred HHHHHHHhcC
Q 010888 410 YDLLVERTEG 419 (498)
Q Consensus 410 l~~La~~t~g 419 (498)
++.++..+.|
T Consensus 216 l~~i~~~s~G 225 (252)
T d1sxje2 216 LKRIAQASNG 225 (252)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHcCC
Confidence 4556665554
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.62 E-value=2.8e-14 Score=136.16 Aligned_cols=226 Identities=16% Similarity=0.116 Sum_probs=142.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEecccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l 287 (498)
.|.+..+.++|.+..++.+.+.+...+..+ ..++.++||+||||||||++++++++++ +..++.+++...
T Consensus 10 ~~~y~p~~l~~Re~ei~~l~~~l~~~l~~~------~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~ 83 (276)
T d1fnna2 10 SPSYVPKRLPHREQQLQQLDILLGNWLRNP------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 83 (276)
T ss_dssp STTCCCSCCTTCHHHHHHHHHHHHHHHHST------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence 567778889999999999998876544322 3456799999999999999999999987 456777776443
Q ss_pred ch----------------hcccCcHH-HHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC
Q 010888 288 VS----------------KWRGDSEK-LIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 349 (498)
Q Consensus 288 ~~----------------~~~G~~~~-~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 349 (498)
.. ...+.... ....+..... ...+.++++|++|.+.... ...+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------~~~~~~~~~~ 150 (276)
T d1fnna2 84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDI-------------LSTFIRLGQE 150 (276)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHH-------------HHHHHHHTTC
T ss_pred hhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhh-------------hhhHHHHHhc
Confidence 21 11122222 2233333333 3346788899998874321 1112222221
Q ss_pred C-ccCCCcEEEEEEeCCC---CCCCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCCCCC---CCCCHHHHHHHhcC--
Q 010888 350 L-TQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDLLVERTEG-- 419 (498)
Q Consensus 350 ~-~~~~~~viVIaaTn~p---~~Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~---~~~~l~~La~~t~g-- 419 (498)
. ......+.+|++++.+ +.+++++.+|+. ..+.|++|+.++..+|++.++...... .+..++.+++.+..
T Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~ 230 (276)
T d1fnna2 151 ADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 230 (276)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred cccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhh
Confidence 1 1223346777788775 457888888764 558999999999999999877543222 22234556665421
Q ss_pred ------CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 420 ------YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 420 ------~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
-+++.+..+++.|+..+..+ +. ..|+.+|+++|++++
T Consensus 231 ~~~~~~G~~R~a~~ll~~a~~~A~~~------~~------------~~I~~edv~~A~~~~ 273 (276)
T d1fnna2 231 PLDTNRGDARLAIDILYRSAYAAQQN------GR------------KHIAPEDVRKSSKEV 273 (276)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHT------TC------------SSCCHHHHHHHHHHH
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHc------CC------------CCcCHHHHHHHHHHH
Confidence 23455556666665543321 11 239999999999864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.60 E-value=6.1e-15 Score=138.48 Aligned_cols=193 Identities=22% Similarity=0.270 Sum_probs=126.3
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 212 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 212 ~~~~~~~~Iv-G--~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.|+.+|++++ | .+.+.+.+++++..+ ....+.++||||||||||+|++++++++ +..+++++..
T Consensus 4 n~~~tFdnF~vg~~N~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~ 73 (213)
T d1l8qa2 4 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 73 (213)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCChhhccCCCcHHHHHHHHHHHHhCc----------CCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence 4788999965 5 455666666665432 1223459999999999999999999987 6778888887
Q ss_pred ccchhcccCcHH-HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC
Q 010888 286 SVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 364 (498)
Q Consensus 286 ~l~~~~~G~~~~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn 364 (498)
++.......... ....+.+..+ ...+|+|||+|.+..+ ......+...++.....+. .+|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~-----------~~~~~~lf~lin~~~~~~~-~iiits~~ 139 (213)
T d1l8qa2 74 DFAQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGK-----------ERTQIEFFHIFNTLYLLEK-QIILASDR 139 (213)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTC-----------HHHHHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred HHHHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCc-----------hHHHHHHHHHHHHHhhccc-eEEEecCC
Confidence 765443321111 1222222222 3479999999999754 3344555566655444444 45666666
Q ss_pred CCCC---CCHHHHhcccce--eEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHH
Q 010888 365 LPWE---LDAAMLRRLEKR--ILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKE 431 (498)
Q Consensus 365 ~p~~---Ld~al~~Rf~~~--i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~ 431 (498)
.|.. +.+.+.+|+... +.++ |+.++|..+++.++.......+. .++-|++++. +.++|..+++.
T Consensus 140 ~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~ 209 (213)
T d1l8qa2 140 HPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKL 209 (213)
T ss_dssp CGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHH
T ss_pred cchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 6644 458899988543 4555 67788999999999877766443 3555676653 56777766554
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.58 E-value=2.8e-14 Score=136.99 Aligned_cols=235 Identities=14% Similarity=0.040 Sum_probs=138.8
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CeEEEEe
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS 283 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---------~~~i~v~ 283 (498)
+.+..+.++|.+...+.+.+.+..++.... ....+...++|+||||||||++++++++++. ..+.+++
T Consensus 11 ~~~~P~~~~~Re~e~~~l~~~l~~~~~~~~---~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~ 87 (287)
T d1w5sa2 11 ENYIPPELRVRRGEAEALARIYLNRLLSGA---GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 87 (287)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSS---CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHHcCC---CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeec
Confidence 456678899998888888887654432110 0112223467889999999999999999872 4455666
Q ss_pred ccccchh----------------cccCcHHHHHH-HHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 284 ASSVVSK----------------WRGDSEKLIKV-LFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 284 ~s~l~~~----------------~~G~~~~~l~~-~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
+...... ..+.....+.. +..... ...+.++++||+|.+....+.... .......+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~----~~~~l~~l~~ 163 (287)
T d1w5sa2 88 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAE----DLYTLLRVHE 163 (287)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHH----HHHHHHTHHH
T ss_pred cccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchh----HHHHHHHHHH
Confidence 5443211 12333333333 333332 334578899999999755432211 1112223333
Q ss_pred HhhCCccCCCcEEEEEEeCCCCC------CCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC---CCHHHHHHH
Q 010888 346 QMDGLTQSDELVFVLAATNLPWE------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES---LPYDLLVER 416 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p~~------Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~---~~l~~La~~ 416 (498)
.+...... ....+|+.++.+.. ..+++.+|+...++++.|+.++..+|++.+++....... ..++.+++.
T Consensus 164 ~l~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~ 242 (287)
T d1w5sa2 164 EIPSRDGV-NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 242 (287)
T ss_dssp HSCCTTSC-CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred hcchhhcc-cceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHH
Confidence 33333222 33455555554432 346778899999999999999999999988754322222 235666766
Q ss_pred hcC-----CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhc
Q 010888 417 TEG-----YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 473 (498)
Q Consensus 417 t~g-----~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~ 473 (498)
+.. ...+....+++.|+..+.++ +. ..|+.+|+++|+++
T Consensus 243 ~~~~~~~~gd~R~ai~~l~~a~~~A~~~------~~------------~~It~~~V~~A~~e 286 (287)
T d1w5sa2 243 YGEDKGGDGSARRAIVALKMACEMAEAM------GR------------DSLSEDLVRKAVSE 286 (287)
T ss_dssp HCGGGTSCCCHHHHHHHHHHHHHHHHHT------TC------------SSCCHHHHHHHHHH
T ss_pred HhccccCCCCHHHHHHHHHHHHHHHHHc------CC------------CCCCHHHHHHHHhc
Confidence 642 23444445666665443321 11 23999999999874
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=4.8e-14 Score=136.34 Aligned_cols=164 Identities=25% Similarity=0.369 Sum_probs=123.9
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 283 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~ 283 (498)
.-.++.++|.++..+++.+.+.. ...+++||.||||+|||.+++.+|..+ +..++.++
T Consensus 14 ~~~ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~ 81 (268)
T d1r6bx2 14 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 81 (268)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCcccChHHHHHHHHHHHhc------------CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEee
Confidence 34577899999999999887732 233689999999999999999999975 57899999
Q ss_pred ccccch--hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 284 ASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 284 ~s~l~~--~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
.+.+.+ ++.|+.+..++.++..+....+.||||||++.+...-+......+ +...+.....++. +.+|+
T Consensus 82 ~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d--------~a~~Lkp~L~rg~-i~vIg 152 (268)
T d1r6bx2 82 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD--------AANLIKPLLSSGK-IRVIG 152 (268)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH--------HHHHHSSCSSSCC-CEEEE
T ss_pred echHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCcccc--------HHHHhhHHHhCCC-CeEEE
Confidence 998885 688999999999999998888899999999999865433222111 2223333333443 66777
Q ss_pred EeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 362 ATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 362 aTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
+|... ..-|+++.+|| ..+.+..|+.++-..||+...
T Consensus 153 atT~eey~~~~e~d~al~rrF-~~I~V~Eps~e~t~~IL~~~~ 194 (268)
T d1r6bx2 153 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLK 194 (268)
T ss_dssp EECHHHHHCCCCCTTSSGGGE-EEEECCCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHhhcHHHHhhh-cccccCCCCHHHHHHHHHHhh
Confidence 76532 34689999999 669999999999999998754
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.53 E-value=2.7e-14 Score=136.98 Aligned_cols=207 Identities=21% Similarity=0.257 Sum_probs=138.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW---- 291 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~---- 291 (498)
++||.+.+++.+.+.+.. ......+|||+||+|||||++|++|+... ..+++.++|..+....
T Consensus 1 ~~v~~S~~~~~~~~~~~~----------~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~ 70 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAE 70 (247)
T ss_dssp CCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHH
T ss_pred CeEecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHH
Confidence 478999999988887754 23445679999999999999999999877 4688999987664221
Q ss_pred -ccCc-------HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC--------CccCCC
Q 010888 292 -RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQSDE 355 (498)
Q Consensus 292 -~G~~-------~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~~~~ 355 (498)
.|.. ......+++.+. .++|||||+|.+... .+..|+..++. ......
T Consensus 71 lfg~~~~~~~~~~~~~~g~l~~a~---gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~~~~~~~~~ 134 (247)
T d1ny5a2 71 LFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEIEV 134 (247)
T ss_dssp HHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred hcCcccCCcCCcccccCCHHHccC---CCEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEECCCCCceec
Confidence 1100 000122344443 368999999998643 33445555431 111222
Q ss_pred cEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHH----HHhcCCCCCCCCCCHHHHHHH----hcCC
Q 010888 356 LVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMF----ESLLPSQTGEESLPYDLLVER----TEGY 420 (498)
Q Consensus 356 ~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL----~~~l~~~~~~~~~~l~~La~~----t~g~ 420 (498)
++.+|++|+.+ ..+++.+..|+.. +.+.+|+..+|.+-+ +.++.. ++.. ..++
T Consensus 135 ~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~l~~~~l~~-----------~~~~~~~~~~~l 202 (247)
T d1ny5a2 135 NVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKK-----------FSRKYAKEVEGF 202 (247)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHH-----------HHHHTTCCCCEE
T ss_pred CeEEEEecCCCHHHHHHcCCCcHHHHhhcCe-eeecCCChhhchhhHhhhhhhhhhh-----------hhhhcCCCCCCC
Confidence 46688888764 2367777777743 567778777665433 333322 2222 2458
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHH
Q 010888 421 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 469 (498)
Q Consensus 421 s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~ 469 (498)
++..+..|.++.|+++++++.+.++.+...+.+.. |+.+|+..
T Consensus 203 s~~al~~L~~~~WPGNl~EL~~~l~~a~~~~~~~~------I~~~dl~~ 245 (247)
T d1ny5a2 203 TKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKF------IDRGELSC 245 (247)
T ss_dssp CHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSSE------ECHHHHHH
T ss_pred CHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCe------ECHHHccc
Confidence 89999999999999999999999998876655443 89999864
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.1e-14 Score=133.92 Aligned_cols=159 Identities=23% Similarity=0.373 Sum_probs=115.1
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 283 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~ 283 (498)
.-.++.++|.++..+++.+.+.. ....+++|.||||+|||.+++.+|..+ +.+++.++
T Consensus 18 ~g~ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld 85 (195)
T d1jbka_ 18 QGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred cCCCCCCcCcHHHHHHHHHHHhc------------cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEee
Confidence 45678899999999999887743 223689999999999999999999966 57899999
Q ss_pred ccccch--hcccCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 284 ASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 284 ~s~l~~--~~~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
.+.+.+ +|.|+.+..++.+++.+... ...||||||++.+...-+... ..+. .+-|...+. ++. +.+|
T Consensus 86 ~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g-~~d~----~~~Lkp~L~----rg~-l~~I 155 (195)
T d1jbka_ 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDA----GNMLKPALA----RGE-LHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCC----HHHHHHHHH----TTS-CCEE
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCC-cccH----HHHHHHHHh----CCC-ceEE
Confidence 998874 56788999999999887654 467999999999976432211 1111 222333332 222 5566
Q ss_pred EEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHH
Q 010888 361 AATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 361 aaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL 395 (498)
++|... -.-|+++.+|| ..+.+..|+.++-..||
T Consensus 156 gatT~eey~~~~e~d~aL~rrF-~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 156 GATTLDEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTE-EEEECCCCCHHHHHTTC
T ss_pred ecCCHHHHHHHHHcCHHHHhcC-CEeecCCCCHHHHHHHh
Confidence 666432 24699999999 56999999999877665
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.51 E-value=5.3e-16 Score=156.98 Aligned_cols=168 Identities=20% Similarity=0.131 Sum_probs=106.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc-ccCcHHHHHHHHHHH------HhcCCeEEEEcCcc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW-RGDSEKLIKVLFELA------RHHAPSTIFLDEID 320 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~-~G~~~~~l~~~f~~a------~~~~p~VL~IDEiD 320 (498)
.+..+++||+||||||||++|+++|+.++.+++++|+++..+.+ .+........+|+.+ ....|+++++||+|
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD 230 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLD 230 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHH
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHh
Confidence 45567999999999999999999999999999999998875543 221111111112211 11224445555555
Q ss_pred chhhhccccchhhHHHHHHHHHHHHHhhCCcc-----CCC------cEEEEEEeCCCCCCCHHHHh-cccceeEecCCCH
Q 010888 321 AIISQRGEARSEHEASRRLKTELLIQMDGLTQ-----SDE------LVFVLAATNLPWELDAAMLR-RLEKRILVPLPDT 388 (498)
Q Consensus 321 ~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-----~~~------~viVIaaTn~p~~Ld~al~~-Rf~~~i~~~~Pd~ 388 (498)
.|.. .++|... ... ...+|+|||... .+.++. ||+..+++..|+.
T Consensus 231 ~l~~---------------------~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~--~~~~r~~Rf~~~i~~~~~~~ 287 (362)
T d1svma_ 231 NLRD---------------------YLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYS--VPKTLQARFVKQIDFRPKDY 287 (362)
T ss_dssp TTHH---------------------HHHCSSCEEECCSSSCCEEECCCCEEEEECSCC--CCHHHHTTEEEEEECCCCHH
T ss_pred hccc---------------------ccCCcchhhhhhhhhchhhhccCCceeeccccc--ccccccccCceEEeecCCCc
Confidence 4432 2332210 000 113678999643 223333 9999999988877
Q ss_pred HHHH-HHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 010888 389 EARR-AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 389 ~eR~-~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl 440 (498)
..+. .++..+++.... ..+.+.++..+.+++++|++.+++.+.....+++
T Consensus 288 ~~~~~~~l~~i~~~~~l--~~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l 338 (362)
T d1svma_ 288 LKHCLERSEFLLEKRII--QSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338 (362)
T ss_dssp HHHHHHTCTHHHHTTCT--TCHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC--CCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 6664 444444444433 3456678888899999999999998887766654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.1e-13 Score=137.33 Aligned_cols=206 Identities=18% Similarity=0.208 Sum_probs=135.4
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-----cc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-----WR 292 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-----~~ 292 (498)
..|+|++++++.+.+.+...... ......|...+||.||||+|||.+|+++|+.++.+++.++++++... ..
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~---l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~ 98 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 98 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred CeecChHHHHHHHHHHHHHHHcc---CCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhc
Confidence 36899999999999987543211 11123444579999999999999999999999999999999887532 22
Q ss_pred cCc----HHHH-HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------ccCCCcEEE
Q 010888 293 GDS----EKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFV 359 (498)
Q Consensus 293 G~~----~~~l-~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~viV 359 (498)
|.. .... ..+.........+|+++||+|...+ .+.+.|++.++.- ...-.+.++
T Consensus 99 g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-------------~V~~~lLqild~G~ltd~~Gr~vdf~n~ii 165 (315)
T d1r6bx3 99 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNVVL 165 (315)
T ss_dssp CCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred ccCCCccccccCChhhHHHHhCccchhhhcccccccc-------------hHhhhhHHhhccceecCCCCCccCccceEE
Confidence 221 1111 1233445566779999999998753 3667777777531 112345788
Q ss_pred EEEeCCCC-------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC-------CC--
Q 010888 360 LAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT-------GE-- 405 (498)
Q Consensus 360 IaaTn~p~-------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~-------~~-- 405 (498)
|+|+|-.. .+.|.++.|++..+.|.+.+.++...|+...+.... ..
T Consensus 166 I~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~ 245 (315)
T d1r6bx3 166 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLE 245 (315)
T ss_dssp EEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred EeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 88998431 267899999999999999999998888776553211 11
Q ss_pred -CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 010888 406 -ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 406 -~~~~l~~La~~--t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.+..++.+++. ...+-.+.|+.+++.-....+.+
T Consensus 246 ~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~~i~~~la~ 282 (315)
T d1r6bx3 246 VSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 282 (315)
T ss_dssp ECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHH
Confidence 11123444443 23344466666666555554443
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.50 E-value=9.7e-14 Score=138.40 Aligned_cols=157 Identities=24% Similarity=0.310 Sum_probs=101.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------------
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------------- 276 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---------------- 276 (498)
|.+.|.+|+|++.+|+.|.-.+..+ ..+++||.||||||||++|++++.-+.
T Consensus 2 ~~~~f~~I~Gq~~~kral~laa~~~------------~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~ 69 (333)
T d1g8pa_ 2 PVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 69 (333)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCChhhccCcHHHHHHHHHHHhcc------------CCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccc
Confidence 4577999999999999877554321 125899999999999999999998651
Q ss_pred -----------------CeEEEEeccccchhcccCc--HHHH--------HHHHHHHHhcCCeEEEEcCccchhhhcccc
Q 010888 277 -----------------TTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEIDAIISQRGEA 329 (498)
Q Consensus 277 -----------------~~~i~v~~s~l~~~~~G~~--~~~l--------~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~ 329 (498)
.+++........+...|.. .... .+.+..|. .+|+||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~---~gvl~iDEi~~~~------ 140 (333)
T d1g8pa_ 70 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARAN---RGYLYIDECNLLE------ 140 (333)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHT---TEEEEETTGGGSC------
T ss_pred cccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeecccccccc---ccEeecccHHHHH------
Confidence 1222222111111111110 0000 01222222 3799999998874
Q ss_pred chhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCC-CCCCHHHHhcccceeEecCC-CHHHHHHHHHH
Q 010888 330 RSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFES 397 (498)
Q Consensus 330 ~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p-~~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~~ 397 (498)
..+++.|++.|+.-. ....+.++++|+|.. ..+++++++||+..+.+..| +.+.+.++...
T Consensus 141 -------~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~ 213 (333)
T d1g8pa_ 141 -------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 213 (333)
T ss_dssp -------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred -------HHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHh
Confidence 447788888886321 012347788888875 45999999999988888876 56666666544
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=4.2e-13 Score=132.99 Aligned_cols=205 Identities=23% Similarity=0.296 Sum_probs=135.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh-----
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----- 290 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----- 290 (498)
.|+|++++++.+...+...... ......|...+||+||||+|||.+|+.+|+.+ +.+++.++++++...
T Consensus 24 ~v~GQ~~ai~~v~~~i~~~~~~---l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T d1qvra3 24 RVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 100 (315)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGG
T ss_pred eEeCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhh
Confidence 5889999999999877543211 01112344467889999999999999999998 789999999877532
Q ss_pred cccCcHHHH-----HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--c------cCCCcE
Q 010888 291 WRGDSEKLI-----KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSDELV 357 (498)
Q Consensus 291 ~~G~~~~~l-----~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~------~~~~~v 357 (498)
..|.....+ ..+.+..+....+|+++||+|++.+ .+++.|+..++.- . ..-.+.
T Consensus 101 L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~-------------~v~~~ll~~l~~g~~~~~~gr~v~~~~~ 167 (315)
T d1qvra3 101 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-------------DVFNILLQILDDGRLTDSHGRTVDFRNT 167 (315)
T ss_dssp C--------------CHHHHHHHCSSEEEEESSGGGSCH-------------HHHHHHHHHHTTTEECCSSSCCEECTTE
T ss_pred hcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCH-------------HHHHHHHHHhccCceeCCCCcEecCcce
Confidence 223222211 2244555566679999999999853 3667777777642 1 122458
Q ss_pred EEEEEeCCC--------------------------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-------CC
Q 010888 358 FVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TG 404 (498)
Q Consensus 358 iVIaaTn~p--------------------------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~ 404 (498)
++|+|||-- ..+.|++++||+..+.|.+.+.++...|+...+... ..
T Consensus 168 i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i 247 (315)
T d1qvra3 168 VIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRI 247 (315)
T ss_dssp EEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 899999952 348899999999999999999999888876544221 11
Q ss_pred C---CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 010888 405 E---ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 405 ~---~~~~l~~La~~--t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
. .+..++.|+++ ...+-.+.|+..+++.....+.+
T Consensus 248 ~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La~ 287 (315)
T d1qvra3 248 SLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 287 (315)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred cccccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 1 11124456654 33455567777777666655543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.5e-12 Score=121.14 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=102.9
Q ss_pred CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------------
Q 010888 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------------------ 277 (498)
Q Consensus 222 G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------------------ 277 (498)
+++.+.+.+...+.. ...++++||+||||+|||++|+.+|+.+..
T Consensus 6 w~~~~~~~l~~~~~~-----------~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (207)
T d1a5ta2 6 WLRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (207)
T ss_dssp GGHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred ccHHHHHHHHHHHHc-----------CCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhcccc
Confidence 566777777776543 234567999999999999999999997721
Q ss_pred eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC
Q 010888 278 TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 353 (498)
Q Consensus 278 ~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 353 (498)
.++.+....- ...-....++.+.+.+. .....|++|||+|.+. ...++.|+..|+. .
T Consensus 75 ~~~~~~~~~~---~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~-------------~~a~n~Llk~lEe---p 135 (207)
T d1a5ta2 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-------------DAAANALLKTLEE---P 135 (207)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-------------HHHHHHHHHHHTS---C
T ss_pred ccchhhhhhc---ccccccchhhHHhhhhhhccccCccceEEechhhhhh-------------hhhhHHHHHHHHh---h
Confidence 1222221110 00112334555555443 2345699999999985 3356778888874 3
Q ss_pred CCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHh
Q 010888 354 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 398 (498)
Q Consensus 354 ~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~ 398 (498)
..++.+|.+|+.+..+.+.+++|+ ..+.|+.|+.++...+|+..
T Consensus 136 ~~~~~fIl~t~~~~~ll~tI~SRc-~~i~~~~~~~~~~~~~L~~~ 179 (207)
T d1a5ta2 136 PAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSRE 179 (207)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred cccceeeeeecChhhhhhhhccee-EEEecCCCCHHHHHHHHHHc
Confidence 455888999999999999999999 67999999999988888654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.40 E-value=3.5e-13 Score=136.11 Aligned_cols=179 Identities=21% Similarity=0.317 Sum_probs=114.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchh------------------hccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
-|+|++++|+.+..++....++.+. ......|+.++||.||+|||||.+|+++|+.++.+|+
T Consensus 18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i 97 (364)
T d1um8a_ 18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 97 (364)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence 5899999999998776432111100 0112457789999999999999999999999999999
Q ss_pred EEeccccch-hcccC-cHHHHHHHHHH----HHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCcc-
Q 010888 281 NISASSVVS-KWRGD-SEKLIKVLFEL----ARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQ- 352 (498)
Q Consensus 281 ~v~~s~l~~-~~~G~-~~~~l~~~f~~----a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~- 352 (498)
.++++.+.. .|+|. ....++.+... .+....+|+++||+|...+....... .......+++.|++.+++-..
T Consensus 98 r~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~ 177 (364)
T d1um8a_ 98 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 177 (364)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred ehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceec
Confidence 999998865 34442 23344554443 23445689999999998765322111 111234578889999885211
Q ss_pred ---------CCCcEEEEEEeCC-------------------------------------------------CCCCCHHHH
Q 010888 353 ---------SDELVFVLAATNL-------------------------------------------------PWELDAAML 374 (498)
Q Consensus 353 ---------~~~~viVIaaTn~-------------------------------------------------p~~Ld~al~ 374 (498)
...+.+++.|+|- +..+.|++.
T Consensus 178 ~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~ 257 (364)
T d1um8a_ 178 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 257 (364)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHH
Confidence 1122344444443 123678999
Q ss_pred hcccceeEecCCCHHHHHHHHHH
Q 010888 375 RRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 375 ~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
.|++..+.|...+.++..+|+..
T Consensus 258 gRi~~iv~f~~L~~~~l~~Il~~ 280 (364)
T d1um8a_ 258 GRLPVLSTLDSISLEAMVDILQK 280 (364)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHS
T ss_pred HHhcchhhHhhhhHHHHHHHHHH
Confidence 99999999999999999999874
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=9.4e-13 Score=133.72 Aligned_cols=167 Identities=20% Similarity=0.358 Sum_probs=108.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEE
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFN 281 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~ 281 (498)
...-.++.++|.+...+++.+.+.. ...++++|.||||+|||.+++.+|... +..++.
T Consensus 16 a~~g~ld~~~gr~~ei~~~~~~L~r------------~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ 83 (387)
T d1qvra2 16 AAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 83 (387)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HHcCCCCCCcCcHHHHHHHHHHHhc------------CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence 3356688999999999999988743 223678999999999999999999876 467999
Q ss_pred Eeccccch--hcccCcHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 282 ISASSVVS--KWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 282 v~~s~l~~--~~~G~~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
++.+.+.. +|.|+.+..+..++..+.... +.||||||++.+.+..... ...+ +.+.|.-.+. ++. +.
T Consensus 84 ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~-g~~d----~a~~Lkp~L~----rg~-~~ 153 (387)
T d1qvra2 84 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GAVD----AGNMLKPALA----RGE-LR 153 (387)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----TTC-CC
T ss_pred eeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCC-Cccc----HHHHHHHHHh----CCC-cc
Confidence 99999885 578999999999998887764 6789999999997653221 1112 2222333332 232 55
Q ss_pred EEEEeCCC----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 359 VLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 359 VIaaTn~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
+|++|... -.-|+++.+|| ..|.+..|+.++-..||+.....
T Consensus 154 ~I~~tT~~ey~~~e~d~al~rrF-~~v~v~ep~~~~~~~il~~~~~~ 199 (387)
T d1qvra2 154 LIGATTLDEYREIEKDPALERRF-QPVYVDEPTVEETISILRGLKEK 199 (387)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCC-CCEEECCCCHHHHHHHHHHHHHH
T ss_pred eeeecCHHHHHHhcccHHHHHhc-ccccCCCCcHHHHHHHHHHHHHH
Confidence 66666432 12478999999 56999999999999999876543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.33 E-value=2.9e-11 Score=124.76 Aligned_cols=247 Identities=22% Similarity=0.266 Sum_probs=151.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-cccC-
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD- 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-~~G~- 294 (498)
-|+|++++|+.|.-.+....++...-.. ..-.+++||+.||||||||.||+.+|+.++.||+.++|+.+... |+|.
T Consensus 15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (443)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecc
Confidence 4899999999999887554322211111 12335799999999999999999999999999999999887642 3332
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 010888 295 SEKLIKVLFELAR------------------------------------------------------------------- 307 (498)
Q Consensus 295 ~~~~l~~~f~~a~------------------------------------------------------------------- 307 (498)
.+..++.+.+.+.
T Consensus 95 Vesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~~~~~~~~~ 174 (443)
T d1g41a_ 95 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 174 (443)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHHHHHHhcCCcccccccc
Confidence 1222222211110
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 010888 308 ------------------------------------------------------------------------HHAPSTIF 315 (498)
Q Consensus 308 ------------------------------------------------------------------------~~~p~VL~ 315 (498)
....+++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~i~~~ai~~v~~~~~~~ 254 (443)
T d1g41a_ 175 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 254 (443)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred ccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhHHHHHHHHHHhccCccc
Confidence 01124789
Q ss_pred EcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-------CCCcEEEEEEeC----CCCCCCHHHHhcccceeEec
Q 010888 316 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATN----LPWELDAAMLRRLEKRILVP 384 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIaaTn----~p~~Ld~al~~Rf~~~i~~~ 384 (498)
+||+|........... ..........++..+++... ....+++|+++. .+..|-|.+.-||+..+.+.
T Consensus 255 ~dei~k~~~~~~~~g~-d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v~L~ 333 (443)
T d1g41a_ 255 IDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 333 (443)
T ss_dssp EETGGGGSCCSSCSSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred cchhhhhhhcccCCCC-CcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEEEcc
Confidence 9999988766544332 22223455666776665431 123355666653 24568899999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH--hcC----CcHHHHHHHHHHHHhHH-------HHHHHHHhhch----
Q 010888 385 LPDTEARRAMFESLLPSQTGEESLPYDLLVER--TEG----YSGSDIRLVSKEAAMQP-------LRRLMVLLEGR---- 447 (498)
Q Consensus 385 ~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~--t~g----~s~~dL~~L~~~A~~~a-------~rrl~~~le~~---- 447 (498)
..+.++...||..--... +...-.. +.| |+...++.+++.|...+ +|++..++|..
T Consensus 334 ~L~~~dL~rILtEPknsL-------ikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~ 406 (443)
T d1g41a_ 334 ALSAADFERILTEPHASL-------TEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKI 406 (443)
T ss_dssp CCCHHHHHHHHHSSTTCH-------HHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhhhhhH-------HHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHH
Confidence 999999999887421110 1111110 122 68888888888887522 35555555443
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
....|+.... ...|+.+.+.+.+..+
T Consensus 407 ~f~~p~~~~~-~v~Id~~~v~~~l~~~ 432 (443)
T d1g41a_ 407 SFSASDMNGQ-TVNIDAAYVADALGEV 432 (443)
T ss_dssp HHHGGGCTTC-EEEECHHHHHHHHTTT
T ss_pred hccCCCCCCC-EEEECHHHHHhhhhch
Confidence 1112332222 2348899998888654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=4.9e-10 Score=103.19 Aligned_cols=117 Identities=11% Similarity=0.134 Sum_probs=86.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC------CeEEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK------TTFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEI 319 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~------~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEi 319 (498)
.+.++||+||||||||++|..+++... ..++.+.+..- - -.-..++.+.+.+... ..-|++|||+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~---~--I~Id~IR~i~~~~~~~~~~~~~KviIId~a 88 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---N--IGIDDIRTIKDFLNYSPELYTRKYVIVHDC 88 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---C--BCHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC---C--CCHHHHHHHHHHHhhCcccCCCEEEEEeCc
Confidence 357999999999999999999999772 24777765321 1 1234566666665432 3459999999
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCH
Q 010888 320 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 388 (498)
Q Consensus 320 D~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~ 388 (498)
|.|. ...++.|+..|+. .+..+++|.+|+.+..+.+.++||| ..+.++.|..
T Consensus 89 d~l~-------------~~aqNaLLK~LEE---Pp~~t~fiLit~~~~~ll~TI~SRC-~~i~~~~p~~ 140 (198)
T d2gnoa2 89 ERMT-------------QQAANAFLKALEE---PPEYAVIVLNTRRWHYLLPTIKSRV-FRVVVNVPKE 140 (198)
T ss_dssp GGBC-------------HHHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCHH
T ss_pred cccc-------------hhhhhHHHHHHhC---CCCCceeeeccCChhhCHHHHhcce-EEEeCCCchH
Confidence 9984 3467789999983 3445778888999999999999999 5578877753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.89 E-value=3.1e-08 Score=93.24 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=114.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
.|..+-++++|.++..+++.+. ..+.++|+||+|+|||++++.++++.+..+..+++.......
T Consensus 6 ~p~~~~~~f~GR~~el~~l~~~----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~ 69 (283)
T d2fnaa2 6 SPKDNRKDFFDREKEIEKLKGL----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 69 (283)
T ss_dssp SCCCSGGGSCCCHHHHHHHHHT----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCChhhCCChHHHHHHHHhc----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccc
Confidence 3556679999999988887642 135799999999999999999999999988888764432211
Q ss_pred ccCcH----------------------------------------------HHHHHHHHHH--HhcCCeEEEEcCccchh
Q 010888 292 RGDSE----------------------------------------------KLIKVLFELA--RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 292 ~G~~~----------------------------------------------~~l~~~f~~a--~~~~p~VL~IDEiD~l~ 323 (498)
..... ..+..+++.. ....+.++++||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~ 149 (283)
T d2fnaa2 70 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 149 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred cccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhc
Confidence 00000 0011222222 22456789999999886
Q ss_pred hhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC---------CCHHHHhcccceeEecCCCHHHHHHH
Q 010888 324 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---------LDAAMLRRLEKRILVPLPDTEARRAM 394 (498)
Q Consensus 324 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~---------Ld~al~~Rf~~~i~~~~Pd~~eR~~I 394 (498)
...... +...+..... ....+..+.++..... ....+..|+...+.+++.+.++..++
T Consensus 150 ~~~~~~---------~~~~l~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~ 216 (283)
T d2fnaa2 150 KLRGVN---------LLPALAYAYD----NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 216 (283)
T ss_dssp GCTTCC---------CHHHHHHHHH----HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred ccchHH---------HHHHHHHHHH----hhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHH
Confidence 532211 1122222222 1122333433322111 11122234456688889999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 395 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 395 L~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
++..+....... .+++.+.+.+.|. |..|..++...+
T Consensus 217 l~~~~~~~~~~~-~~~~~i~~~~~G~-P~~L~~~~~~~~ 253 (283)
T d2fnaa2 217 LRRGFQEADIDF-KDYEVVYEKIGGI-PGWLTYFGFIYL 253 (283)
T ss_dssp HHHHHHHHTCCC-CCHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred HHhhhhhcCCCH-HHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 988776544443 3467788888875 556766655443
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.86 E-value=1.1e-10 Score=111.24 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=50.5
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
+.|++.-+.+...+.+.+..... .....|+++||+||||||||++|+++|++++.+++.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~ 71 (273)
T d1gvnb_ 4 VNFTDKQFENRLNDNLEELIQGK--------KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 71 (273)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTC--------CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred cccChHHHHHHHHHHHHHHHhcc--------cCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH
Confidence 44555555555555555543221 124567899999999999999999999999999999999877543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.33 E-value=2.5e-06 Score=74.98 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
.|+|.||||+|||||++.++..++.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~ 26 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC
Confidence 4899999999999999999998844
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=2.4e-06 Score=73.22 Aligned_cols=31 Identities=29% Similarity=0.706 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++++|.|||||||||+|+.+|++++.+++..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~ 33 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 5799999999999999999999999998743
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.93 E-value=2.1e-06 Score=75.23 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.+.|+|.|||||||||+|+++|+.++.+++......+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~ 43 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF 43 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHH
Confidence 3789999999999999999999999999987765444
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.85 E-value=5.2e-05 Score=72.14 Aligned_cols=175 Identities=11% Similarity=0.027 Sum_probs=93.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCe---EEEEeccccchh
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTT---FFNISASSVVSK 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~---~i~v~~s~l~~~ 290 (498)
.+++|.+..++++.+.+...- ......|.|+|..|+|||+||+.++++. +.. .+.++.+.....
T Consensus 20 ~~~~gR~~~~~~i~~~L~~~~---------~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~ 90 (277)
T d2a5yb3 20 MTCYIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPK 90 (277)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTT
T ss_pred CceeCcHHHHHHHHHHHHhcc---------CCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCH
Confidence 357899999988888774311 1223567899999999999999998874 211 233332211100
Q ss_pred ------------------------cccCcHHHH-HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 291 ------------------------WRGDSEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 291 ------------------------~~G~~~~~l-~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
......... ...........+++|+||+++... .+ .
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~--------------~~-~---- 151 (277)
T d2a5yb3 91 STFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------TI-R---- 151 (277)
T ss_dssp HHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------HH-H----
T ss_pred HHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHh--------------hh-h----
Confidence 001111222 223333345567999999997431 01 1
Q ss_pred HhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CC-HHHHHHHhcCCcHH
Q 010888 346 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LP-YDLLVERTEGYSGS 423 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~-l~~La~~t~g~s~~ 423 (498)
.+. ..+. .||.||....... .+.... ..+.+...+.++-.++|..+....+.... .+ ...+++.+.|. |-
T Consensus 152 ~~~---~~~s--rilvTTR~~~v~~-~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~Gl-PL 223 (277)
T d2a5yb3 152 WAQ---ELRL--RCLVTTRDVEISN-AASQTC-EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PA 223 (277)
T ss_dssp HHH---HTTC--EEEEEESBGGGGG-GCCSCE-EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HH
T ss_pred hhc---ccCc--eEEEEeehHHHHH-hcCCCC-ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCC-HH
Confidence 111 1112 3455665432211 111121 34677888999999999876543332211 11 34567777775 44
Q ss_pred HHHHH
Q 010888 424 DIRLV 428 (498)
Q Consensus 424 dL~~L 428 (498)
.|..+
T Consensus 224 Al~~i 228 (277)
T d2a5yb3 224 TLMMF 228 (277)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.81 E-value=4.7e-06 Score=72.39 Aligned_cols=31 Identities=42% Similarity=0.727 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..++|.|||||||||+|+.+|+.++.+++.+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~ 35 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKSGLKYINV 35 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence 3688999999999999999999999998753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.77 E-value=5.9e-06 Score=72.06 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=32.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
++-++|.|||||||||+|++++++++.+++.++...+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~ 40 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence 3568899999999999999999999999999887544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.68 E-value=9.7e-06 Score=70.82 Aligned_cols=31 Identities=35% Similarity=0.615 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++++|.|+||+||||+++.+|+.+|.+|+.+
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~ 31 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 31 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 3688999999999999999999999999965
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.65 E-value=1.9e-05 Score=68.42 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
+-|+|.||||+||||+|++++++++.+++.++.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~ 36 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence 568999999999999999999999999888764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.65 E-value=9.4e-05 Score=67.96 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=54.6
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------------------cccC
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------------WRGD 294 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------------------~~G~ 294 (498)
++.++..-++|+||||+|||+++..++... +.+.++++..+-... ....
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 100 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhh
Confidence 346677889999999999999999999876 556666654221100 0011
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 295 SEKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 295 ~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
....+..+........+.+++||.++.+...
T Consensus 101 ~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~ 131 (242)
T d1tf7a2 101 LEDHLQIIKSEINDFKPARIAIDSLSALARG 131 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred HHHHHHHHHHHHHhcCCceeeeecchhhhcC
Confidence 2333445555667788899999999888643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.63 E-value=1.4e-05 Score=70.28 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++++|.|+||+||||+++.+|+++|.+++..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 5688999999999999999999999998854
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=2.2e-05 Score=68.08 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
++-++|.|||||||||+|+.++++++.+++..+
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d 38 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 38 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence 456788999999999999999999998876543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.55 E-value=1.8e-05 Score=69.05 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|+||+||||+++.+|+.++.+|+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~ 32 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 32 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 366779999999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.53 E-value=2.5e-05 Score=67.27 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
+-++|.|||||||||+|+.++++++..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 45889999999999999999999987654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=1.9e-05 Score=68.66 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
++|+|+||||||||+++++++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999999987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.51 E-value=3.4e-05 Score=66.90 Aligned_cols=29 Identities=41% Similarity=0.579 Sum_probs=25.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
+++.+++|.||||+||||+++.+++.++.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 34467999999999999999999999875
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.0003 Score=64.10 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch--------------------hcccCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS--------------------KWRGDSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~--------------------~~~G~~~~~l~~~f~~ 305 (498)
..|.-++|.||+|+||||.+-.+|..+ +..+.-+++..... ....+....++.....
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 345668899999999999999998766 55666565533221 0112234455566666
Q ss_pred HHhcCCeEEEEcCccchh
Q 010888 306 ARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~l~ 323 (498)
++.....+|+||=.....
T Consensus 87 a~~~~~d~ilIDTaGr~~ 104 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQ 104 (211)
T ss_dssp HHHTTCSEEEECCCCCGG
T ss_pred HHHcCCCEEEeccCCCcc
Confidence 666667899999876553
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.40 E-value=5.9e-05 Score=67.24 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.|.-|+|.||||+||||+|+.+|+.+|.+.+.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 44678999999999999999999999876553
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.36 E-value=7.3e-05 Score=66.42 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
+..++|.|||||||||+|+.+|+++|.+.+. ..++.
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~~g~~~i~--~gdll 38 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDML 38 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCeEEe--HHHHH
Confidence 3467789999999999999999999876654 44443
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.33 E-value=7.2e-05 Score=65.61 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.||||+||||+|+.||+.+|.+++.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~ 31 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIST 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceech
Confidence 488999999999999999999998876643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.30 E-value=6.3e-05 Score=66.88 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
|-.++|.|||||||||+|+.+++.+|.+.+.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~is 33 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 33 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence 3468999999999999999999999987653
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.30 E-value=6.6e-05 Score=64.94 Aligned_cols=27 Identities=26% Similarity=0.280 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
+..|+|+|+||+||||+|+++|+.++.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356889999999999999999999853
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.26 E-value=0.00047 Score=62.57 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cc----cCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WR----GDSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~----G~~~~~l~~~f~~a 306 (498)
.++-++|.||+|+||||.+-.+|..+ |..+.-+++...... +. .+....+......+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence 34678899999999999998888866 555555554322110 00 11223333334444
Q ss_pred HhcCCeEEEEcCccchh
Q 010888 307 RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~ 323 (498)
+.....+|+||=.....
T Consensus 85 ~~~~~d~ilIDTaGr~~ 101 (207)
T d1okkd2 85 KARGYDLLFVDTAGRLH 101 (207)
T ss_dssp HHHTCSEEEECCCCCCT
T ss_pred HHCCCCEEEcCccccch
Confidence 44556899999876553
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.26 E-value=0.00094 Score=55.61 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
.+..+|.+|+|+|||+++-.++.+.+..++.+...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~ 42 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS 42 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcCh
Confidence 35789999999999999877777777766666543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=7.5e-05 Score=65.80 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|||||||||+|+.+++.+|...+.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~ 31 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence 578999999999999999999998876644
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=0.00015 Score=64.65 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.-++|.||||+||||+|+.+++.+|.+.+.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is 38 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 457889999999999999999999886654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.16 E-value=0.00026 Score=62.27 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
+.+.-+++.|+||+||||+|+.++...+... ++..++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~--i~~D~~ 48 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 48 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGGTCEE--EEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCCEE--EchHHH
Confidence 4456789999999999999999988877544 444443
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.15 E-value=0.00015 Score=63.94 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.|+|.||||+||||+|+.+|+.+|.+.+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~ 31 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHIST 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceeeH
Confidence 478999999999999999999999876653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.15 E-value=0.00013 Score=61.76 Aligned_cols=35 Identities=34% Similarity=0.557 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
+-|+|+||||+||||+|+.++.+.. .+..++..++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence 3478899999999999999977653 2445554443
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.15 E-value=0.00021 Score=64.44 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.+..+.++|+|||+||||+++.++.+-++...+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi 82 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 82 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence 455578999999999999999999999876543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.14 E-value=0.00015 Score=63.94 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.||||+||||+|+.||+++|.+.+..
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence 478889999999999999999998876544
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=4e-05 Score=67.78 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
.+..|+|+|+||+||||+|+.+|.+++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.13 E-value=0.00016 Score=64.47 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
++-|+|.||||+||||+|+.+++.+|.+.+ +..++.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~i--s~g~ll 43 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLL 43 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCCEEE--EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeeE--eccHHH
Confidence 356899999999999999999999987664 555554
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00065 Score=63.92 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=53.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a~ 307 (498)
+.+..+-+.|+||||+|||+++-.++... +...++++...-... .....+..+..+-...+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~ 129 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 129 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence 45666789999999999999999988766 677777776432110 01223444433333445
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...+.+++||-+..+.+
T Consensus 130 ~~~~~liViDSi~al~~ 146 (263)
T d1u94a1 130 SGAVDVIVVDSVAALTP 146 (263)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEECcccccc
Confidence 56778999999988865
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00017 Score=63.99 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-|+|.||||+||||.|+.||+.+|...+ +..++
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g~~~i--~~g~l 35 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGEL 35 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCceE--cHHHH
Confidence 45899999999999999999999986554 44444
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.12 E-value=0.00014 Score=64.98 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
-.++|.||||+||||+|+.+|+.+|.+++ +..++.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g~~~i--s~gdll 41 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFELKHL--SSGDLL 41 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBCCEEE--EHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 36788899999999999999999997665 444443
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.11 E-value=0.00051 Score=61.09 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.-|+++|.||+||||+|++|++.+ +.+...++..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D 39 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence 458899999999999999999877 4555555554
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.09 E-value=0.0006 Score=62.11 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.+|.-++|.||+|+||||.+-.+|..+ +..+..+++
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~ 47 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 47 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence 345678899999999999988888766 555554544
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.08 E-value=0.00094 Score=60.04 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=50.8
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh-------------------------------
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK------------------------------- 290 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~------------------------------- 290 (498)
++.+++.-++|+|+||+|||+++..++... +...++++..+-...
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPE 100 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSS
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchh
Confidence 346677889999999999999997765432 556666654321100
Q ss_pred ---cc--cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 291 ---WR--GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 291 ---~~--G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
.. ......+..+........|.+++||.++.+...
T Consensus 101 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 101 GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred hhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHh
Confidence 00 011223344455556677899999999888654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00018 Score=64.83 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
-|.|.||||+||+|+|+.||+++|.+++ +..++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~i--StGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--CHHHHH
Confidence 5778899999999999999999988774 544443
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0002 Score=62.78 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.++|.||||+||||+++.+++.++.+.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~ 30 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 47889999999999999999999877664
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.02 E-value=0.00092 Score=66.68 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=64.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEec-ccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSV 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~-s~l 287 (498)
.+..+++++.-.+...+.+++.+.. +..-+|+.||+|+||||+..++.+++. ..++.+-- -+.
T Consensus 132 ~~~~~l~~LG~~~~~~~~l~~l~~~-------------~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~ 198 (401)
T d1p9ra_ 132 ATRLDLHSLGMTAHNHDNFRRLIKR-------------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF 198 (401)
T ss_dssp TTCCCGGGSCCCHHHHHHHHHHHTS-------------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS
T ss_pred ccchhhhhhcccHHHHHHHHHHHhh-------------hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCccc
Confidence 3445688887777888888776532 335688999999999999999999873 34444421 111
Q ss_pred ch------hcccCcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 288 VS------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 288 ~~------~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
.- ...+.........++.+....|.||+|.|+-..
T Consensus 199 ~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~ 239 (401)
T d1p9ra_ 199 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDL 239 (401)
T ss_dssp CCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSH
T ss_pred ccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCCh
Confidence 10 001111112455566777889999999999543
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.98 E-value=0.00025 Score=64.14 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
|.|-||||+||||+|+.||+++|.+++.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~~is 33 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFTYLD 33 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence 5577999999999999999999987653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.98 E-value=0.0017 Score=61.06 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=53.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a~ 307 (498)
+.+..+-+.++||+|||||+++..++... |...++++...-... -....+..+.-+-...+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~ 132 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 132 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHh
Confidence 34566778999999999999999997766 677888876432211 01123444433333344
Q ss_pred hcCCeEEEEcCccchhhhc
Q 010888 308 HHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~~r 326 (498)
...+.+|++|-+..+.+..
T Consensus 133 ~~~~~liIiDSi~al~~r~ 151 (268)
T d1xp8a1 133 SGAIDVVVVDSVAALTPRA 151 (268)
T ss_dssp TTCCSEEEEECTTTCCCST
T ss_pred cCCCcEEEEecccccccHH
Confidence 5568899999999988643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.97 E-value=0.0012 Score=60.00 Aligned_cols=73 Identities=21% Similarity=0.043 Sum_probs=40.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch--------------------hcccCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS--------------------KWRGDSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~--------------------~~~G~~~~~l~~~f~~ 305 (498)
..|.-++|.||+|+||||.+-.+|..+ +..+..+++..... ....+....+......
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 345678899999999999988888766 45555555432210 0111223334444444
Q ss_pred HHhcCCeEEEEcCccc
Q 010888 306 ARHHAPSTIFLDEIDA 321 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~ 321 (498)
++.....+|+||=...
T Consensus 90 ~~~~~~d~IlIDTaGr 105 (211)
T d1j8yf2 90 FLSEKMEIIIVDTAGR 105 (211)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred hhccCCceEEEecCCc
Confidence 5555668999996654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.88 E-value=0.0037 Score=56.41 Aligned_cols=71 Identities=23% Similarity=0.219 Sum_probs=43.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------c----ccCcHHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------W----RGDSEKLIKVLFELARH 308 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~----~G~~~~~l~~~f~~a~~ 308 (498)
+-++|.||+|+||||.+-.+|..+ +..+..+++...... + ..............++.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 90 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 90 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhh
Confidence 446789999999999999998877 556655555322110 0 01122223333334445
Q ss_pred cCCeEEEEcCccch
Q 010888 309 HAPSTIFLDEIDAI 322 (498)
Q Consensus 309 ~~p~VL~IDEiD~l 322 (498)
....+++||=+...
T Consensus 91 ~~~d~vlIDTaGr~ 104 (207)
T d1ls1a2 91 EARDLILVDTAGRL 104 (207)
T ss_dssp HTCCEEEEECCCCS
T ss_pred ccCcceeecccccc
Confidence 55678999877654
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.87 E-value=0.00061 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.156 Sum_probs=17.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAK 269 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAr 269 (498)
......++|.+|||+|||..+-
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~ 25 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFL 25 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHH
T ss_pred HHcCCcEEEEcCCCCChhHHHH
Confidence 3456789999999999996663
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.0017 Score=58.57 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=49.0
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccchh--------cc----------------
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVSK--------WR---------------- 292 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~~~--------~~---------------- 292 (498)
++.++..-++|+||||||||+++..++... +.+.++++...-... ..
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 108 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEEC
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcceEEEec
Confidence 346777889999999999999999887543 445666654321100 00
Q ss_pred ---cCcHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 293 ---GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 293 ---G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
..................+.++++|.+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~ 143 (251)
T d1szpa2 109 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143 (251)
T ss_dssp CSTTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGS
T ss_pred cchhHHHHHHHHHHHHhhccccceeeehhhhhhhh
Confidence 01122233334445556678889998877754
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.79 E-value=0.0021 Score=60.51 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=52.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a~ 307 (498)
+.+..+-+.|+||||||||++|..++... +...++++...-... .....+..+.-+-...+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~ 135 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 46677889999999999999998776654 777888876442210 01223333332223334
Q ss_pred hcCCeEEEEcCccchhhh
Q 010888 308 HHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~~ 325 (498)
...+.+|+||-+..+.+.
T Consensus 136 ~~~~~liIiDSi~al~~~ 153 (269)
T d1mo6a1 136 SGALDIVVIDSVAALVPR 153 (269)
T ss_dssp TTCEEEEEEECSTTCCCH
T ss_pred cCCCCEEEEecccccccH
Confidence 566789999999999863
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0049 Score=60.28 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
+-++|+||||||||+++..+..
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~l~ 185 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKLLA 185 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHHHH
Confidence 4689999999999998865543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00072 Score=57.75 Aligned_cols=31 Identities=26% Similarity=0.099 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
-+.|+|+||||||||++.+++++ |..+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~ 37 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 37 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence 57899999999999999999987 55554443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.60 E-value=0.0036 Score=58.21 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
..+..-++|.|+||+|||+++..++..+ +.++..++.
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 4556678999999999999998887543 677777764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0063 Score=55.03 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
++.++..-++|+||||||||+++..++...
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457777889999999999999999998754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.55 E-value=0.0017 Score=62.77 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEE-eccccch-------hcccCcHHHHHHHHHHHHhcCCeEEEEcCc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK--TTFFNI-SASSVVS-------KWRGDSEKLIKVLFELARHHAPSTIFLDEI 319 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~--~~~i~v-~~s~l~~-------~~~G~~~~~l~~~f~~a~~~~p~VL~IDEi 319 (498)
+++|+.||+|+||||+.++++.... ..++.+ +..++.- ...+...-....++..+....|..|++.|+
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi 244 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 244 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred CCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence 6899999999999999999998873 344443 2222210 011111123455677778889999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.55 E-value=0.00065 Score=58.71 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+-|+|.|+||+||||+++.+++.++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999884
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.46 E-value=0.0024 Score=57.62 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccch
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS 289 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~ 289 (498)
..+..|+|+|.||+||||+|+++++.+ +.+++.++...+..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 344678999999999999999999866 67888888766543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0092 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+.++|+||..+|||++.|.++-..
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHHHHHH
Confidence 3678999999999999999998743
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=96.40 E-value=0.0032 Score=59.13 Aligned_cols=58 Identities=26% Similarity=0.296 Sum_probs=38.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
+....++|+|||+||||+++.+|++-+|..- .++.+. + -|..+......++++||...
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~~-~~~~~~--~------------~f~l~~l~~k~~~~~~e~~~ 159 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTN--E------------NFPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTC--S------------SCTTGGGSSCSEEEECSCCE
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHhcchh-hccccC--C------------CccccccCCCEEEEEeCCCc
Confidence 4456789999999999999999999996532 222111 0 12233333446889999853
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0067 Score=55.94 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+-|.||+|+|||||++.+...+
T Consensus 26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4666789999999999999999999866
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.31 E-value=0.0012 Score=57.17 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=24.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK---TTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~---~~~i~v~ 283 (498)
-++|.|+||+||||+++.+++.++ ..+..++
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~ 36 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478899999999999999999884 3444444
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.17 E-value=0.0029 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-|-|.||+|+||||+|+.++..++
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 355899999999999999998774
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0057 Score=56.81 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+-|.||+|+|||||++.+....
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 5667789999999999999999998755
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0018 Score=57.38 Aligned_cols=28 Identities=36% Similarity=0.562 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.|+|.||+|+|||++++.+++..+..+.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~ 29 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFG 29 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCcee
Confidence 4899999999999999999998865543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0016 Score=57.09 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=26.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
++.++..-++|+||||+|||+++..+|...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456777889999999999999999998765
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0019 Score=56.92 Aligned_cols=28 Identities=39% Similarity=0.691 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
+.|+|.||+|+|||+|++.++++....+
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 4599999999999999999999875443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.016 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+..-.+|+|+||+|||+++-.+|..+
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999988764
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.88 E-value=0.0057 Score=55.70 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+++++.+|+|+|||+++-..+... +...+.+.+
T Consensus 59 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~P 94 (237)
T d1gkub1 59 ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP 94 (237)
T ss_dssp CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred CCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence 689999999999998765555433 445555544
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.78 E-value=0.013 Score=54.35 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||||++.++...
T Consensus 41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 5666789999999999999999998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.69 E-value=0.023 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+-++|+||...|||++.|.++-..
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l~~ 59 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTALIA 59 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhHHHH
Confidence 358999999999999999997743
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.69 E-value=0.031 Score=49.22 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAK 269 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAr 269 (498)
.+++++.+|+|+|||+++-
T Consensus 40 ~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHHH
Confidence 3579999999999998864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.68 E-value=0.0027 Score=57.75 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.7
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
++.++..-++|+||||||||+++-.++...
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346777889999999999999999998754
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=95.51 E-value=0.011 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+-|.||+|+||||+.+.++.-.
T Consensus 23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4555678999999999999999999865
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.45 E-value=0.061 Score=44.37 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.|+|.|+||+|||+|.+.+...-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999997643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.37 E-value=0.04 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
++|+|.|+||+|||+|..++...
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999874
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.29 E-value=0.0051 Score=53.61 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+-++|.||+|+|||++++.+.++..
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998874
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.084 Score=48.92 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
+..-||+|..|+|||.++-..+... |.....+-+.+
T Consensus 104 ~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~ 142 (264)
T d1gm5a3 104 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTS 142 (264)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCH
T ss_pred cceeeeeccccccccHHHHHHHHHHHhcccceeEEeehH
Confidence 3568999999999999987776543 66666665543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.16 E-value=0.01 Score=50.70 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=24.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
-+-+.|++|+|||||+..++.++ |..+..+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35699999999999999999987 55555553
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.03 E-value=0.0059 Score=54.75 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.++..-++|.|+||+|||+++..+|...
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45666789999999999999999999765
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.03 E-value=0.053 Score=48.03 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
+.++.+|+|+|||.++-.++.+++.+.+.+-+
T Consensus 87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p 118 (206)
T d2fz4a1 87 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 118 (206)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence 46788999999999999999999777665544
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0072 Score=53.87 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
-|-|.||+|+||||+|+.++..++.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhch
Confidence 3568999999999999999999864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.95 E-value=0.062 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|+|.|++|+|||+|++.+...
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998763
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.92 E-value=0.017 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|+|.|+||+|||+|.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999998663
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.78 E-value=0.011 Score=51.62 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
..++|||.|++|+|||++|-.+..+ |..++
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv 42 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR-GHRLI 42 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence 3478999999999999999888875 66654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=94.77 E-value=0.023 Score=52.16 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+-|.||.|+||||+.+.++...
T Consensus 29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3555678899999999999999998865
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.052 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|+|.|+||+|||+|..++..+
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.69 E-value=0.016 Score=49.79 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
++.-|+|.|+=|+|||+++|.+++.+|.+
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 44468899999999999999999999653
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.011 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+.++|.||+|+||++|++.+.++..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999998763
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.56 E-value=0.057 Score=45.70 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
....|++.|.||+|||+|+..+...
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3357999999999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.07 Score=46.42 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|+|.|+||+|||+|..++.++-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.48 E-value=0.023 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.-.|++.|+||+|||+|++.+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998653
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=94.30 E-value=0.051 Score=50.35 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCCCceEEEEcCCCCcHHH
Q 010888 248 LSPWKGILLFGPPGTGKTM 266 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~ 266 (498)
....+.+|+.+|+|+|||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4566889999999999995
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.23 E-value=0.019 Score=51.57 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh--CCeEEEEe
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 283 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l--~~~~i~v~ 283 (498)
+++.|++|+|||||.+.+.+.+ +.....++
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence 6899999999999999998766 44555554
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.11 E-value=0.019 Score=49.87 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
...+|||.|++|+|||++|-.+..+ |..++
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li 43 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKR-GHRLV 43 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence 3579999999999999999887776 55443
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.10 E-value=0.015 Score=50.80 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
...+|||.||+|+|||++|-.+..+ |..++
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lv 43 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK-NHLFV 43 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence 4578999999999999999888754 65554
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.046 Score=51.93 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~s~l 287 (498)
..|--|-|.|++|+||||+|+.+...+. ..+..++..++
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence 3445677899999999999999999873 44666666554
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.07 E-value=0.058 Score=45.79 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
..|++.|+||+|||+|++.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998854
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.98 E-value=0.023 Score=49.47 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
-+-|+|++|+||||+|+.+ .+.|.+++.
T Consensus 5 IIgitG~~gSGKstva~~l-~~~g~~~~~ 32 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALL-RSWGYPVLD 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHH-HHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCeEEE
Confidence 3558899999999999998 567877664
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.77 E-value=0.073 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|.|.|.||+|||+|++++...
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.021 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+-++|.||+|+|||+|.+.+.....
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999864
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.30 E-value=0.022 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.6
Q ss_pred ceEEEEcCCCCcHHHHH-HHHHH
Q 010888 252 KGILLFGPPGTGKTMLA-KAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lA-raia~ 273 (498)
.++|+.|+||||||+++ ..++.
T Consensus 15 ~~~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeeCCccHHHHHHHHHHH
Confidence 56899999999999764 43433
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.084 Score=50.48 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=43.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CC--eEEEEeccccch----------------------------hcccCcHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KT--TFFNISASSVVS----------------------------KWRGDSEK 297 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~--~~i~v~~s~l~~----------------------------~~~G~~~~ 297 (498)
...|=|+||||+|||+|+.+++..+ |. -++.++++.-.. ...|....
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~ 133 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 133 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccchh
Confidence 3568899999999999999998866 32 344444432110 11233444
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccc
Q 010888 298 LIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 298 ~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
..............++++|+-+..
T Consensus 134 ~~~~~~~~~~~~g~d~iliEtvG~ 157 (327)
T d2p67a1 134 RARELMLLCEAAGYDVVIVETVGV 157 (327)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECC
T ss_pred hhhHHHHHHHhcCCCeEEEeeccc
Confidence 455555556666677888887743
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.27 E-value=0.02 Score=49.99 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
|.-|.|.|+.|+||||+++.+++.++...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~~~~~ 38 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKNDICL 38 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 345788999999999999999999976544
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.23 E-value=0.047 Score=51.28 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh------CCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l------~~~~i~v~~s~l 287 (498)
--|-|.|++|+||||++..|...+ +..+..++..++
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred EEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence 345578999999999999987765 345556665554
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.047 Score=48.66 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=24.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
-|.|.|+.|+||||+++.+++.+ |.+++.+.
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 38 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 38 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 35566999999999999999977 66666553
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.03 E-value=0.042 Score=48.12 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
|.|.|+.|+||||+++.+++.+ |.+++.+.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~ 35 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 5678999999999999999977 56666554
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.17 Score=44.14 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+++++.-|+|+|||.++....-......+.+.
T Consensus 41 ~~vlv~apTGsGKT~~~~~~~~~~~~~~~~v~ 72 (206)
T d1oywa2 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred CCEEEEcCCCCCCcchhhhhhhhccCceEEec
Confidence 68999999999999987655555454444443
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.90 E-value=0.026 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
|-|+|++||||||+++.+. +.|.+++.
T Consensus 5 IgITG~igSGKStv~~~l~-~~G~~vid 31 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT-DLGVPLVD 31 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 4589999999999999875 67887764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.82 E-value=0.029 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
-++|.|+||+|||+|+..+...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.041 Score=48.84 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
|-|+|++|+||||+++.+. +.|.+++.
T Consensus 6 IgitG~igSGKStv~~~l~-~~G~~vid 32 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA-DLGINVID 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred EEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence 5589999999999999775 77876654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.78 E-value=0.025 Score=51.55 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+..+-|.||+|+|||||.+.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCcchhhHhccCCC
Confidence 4556779999999999999999998754
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.77 E-value=0.03 Score=51.10 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+-|.||+|+||||+.+.++.-.
T Consensus 23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 23 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4556678999999999999999998865
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.74 E-value=0.029 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.....++|.|+||+|||+|..++..
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3345799999999999999999854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.70 E-value=0.038 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
-.|+|.|+||+|||+|.+++...
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999774
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=92.56 E-value=0.025 Score=52.28 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+-|.||+|+|||||++.++...
T Consensus 38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 5666789999999999999999998865
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.48 E-value=0.034 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=16.8
Q ss_pred ceEEEEcCCCCcHHHHH-HHHHH
Q 010888 252 KGILLFGPPGTGKTMLA-KAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lA-raia~ 273 (498)
.++++.|+||||||+++ +.++.
T Consensus 25 g~~lV~g~aGSGKTt~l~~ri~~ 47 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLTHRIAY 47 (318)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHH
Confidence 56999999999999765 33444
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.45 E-value=0.023 Score=50.61 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||.|+|||||.+.++..+
T Consensus 24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 24 IEKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 4555678899999999999999999865
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.39 E-value=0.11 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
....|+|.|.||+|||++..+|..+
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=92.37 E-value=0.03 Score=51.42 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.++...+-|.||+|+|||||++.++...
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5667789999999999999999998755
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.34 E-value=0.14 Score=48.72 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---C--CeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~--~~~i~v~~s 285 (498)
..+=|.||||+|||+|...+...+ + .-++.++++
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDps 90 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 90 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccc
Confidence 457799999999999999999865 3 344555543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.13 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|+..+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999888763
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=92.25 E-value=0.03 Score=51.36 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+.-+-|.||+|+||||+++.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 28 VPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp ECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 4555678999999999999999998855
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.22 E-value=0.36 Score=40.49 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
.-|++.|.+|+|||+|++.+..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999999876
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.20 E-value=0.038 Score=50.54 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+-|.||+|+||||+.+.++...
T Consensus 29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 29 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4556678999999999999999999866
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=92.08 E-value=0.035 Score=50.90 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+-|.||+|+||||+++.++...
T Consensus 26 i~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3455678899999999999999999865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.03 E-value=0.038 Score=51.87 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+-|.||+|+|||||++.|+..+
T Consensus 59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 59 IEKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5677789999999999999999999866
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.03 E-value=0.037 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
-+.|.||+|+||||+.+.|+...
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 45578999999999999999876
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.00 E-value=0.046 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+-|.|.|+.|+||||+++.+++.+
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 457788999999999999999877
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.042 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.+++.|+||+|||+|++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999998764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.84 E-value=0.041 Score=49.55 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
-|-|+|+.||||||+|+.+++..|. ..+++
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~g~--~~i~~ 32 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNYSA--VKYQL 32 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCE--EECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC--eEEcc
Confidence 4679999999999999999998775 34443
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.068 Score=47.89 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
|+-+.|-|+-|+||||+++.+++.++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 467889999999999999999999865443
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.50 E-value=0.051 Score=45.80 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|+||+|||+|+..+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998876
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.46 E-value=0.095 Score=46.63 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+-|.|.|+-|+||||+++.+++.+......+.
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~ 35 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 35 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE
Confidence 45778899999999999999999976665554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.45 E-value=0.03 Score=51.41 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+-|.||+|+||||+.+.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 4556779999999999999999999855
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.054 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|+|.|++|+|||+|++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999998863
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.54 Score=42.31 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
+...||+|.+|+|||.++-..+... |...+.+-+..
T Consensus 76 ~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~ 114 (233)
T d2eyqa3 76 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 114 (233)
T ss_dssp CCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred ccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHH
Confidence 4578999999999999987776654 77777666543
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.23 E-value=0.074 Score=52.08 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.+|+++.|+||+|||.+++.+..++ +.+++.++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3789999999999999988776554 777777765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.057 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|++.+...
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.20 E-value=0.057 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.+++.|++|+|||+|++.+...
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999998764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.15 E-value=0.058 Score=45.72 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|.+.|+||+|||+|++++..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999974
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.07 E-value=0.059 Score=50.61 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
-|-+.|++|+||||+++++.+.+ +.....+...++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 47799999999999999998876 556666665544
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=0.057 Score=45.87 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.++|.|++|+|||+|++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999987
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.057 Score=46.47 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|++|+|||+|++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999998875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=90.94 E-value=0.052 Score=50.19 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+-|.||+|+||||++++++.-.
T Consensus 25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 25 ARAGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 4556678899999999999999998754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.80 E-value=0.066 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.+++.|++|+|||+|++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.68 E-value=0.068 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
-+++.|++|+|||+|++.+...
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.069 Score=45.10 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|+|.|.+|+|||+|++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.58 E-value=0.063 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|+|.|+||+|||+|..++.++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.072 Score=45.12 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
-|++.|.+|+|||+|++.+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999863
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.41 E-value=0.069 Score=45.31 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
-|+|.|.+|+|||+|++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999999876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.07 Score=44.96 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.+++.|++|+|||+|++.+...
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.40 E-value=0.075 Score=44.58 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|++|+|||+|++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999986
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.27 E-value=0.077 Score=44.97 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.+++.|++|+|||+|++.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 388999999999999999875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.22 E-value=0.078 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|.+|+|||+|+..+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999999876
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.077 Score=44.72 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|+..+...
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998874
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.078 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|.+|+|||+|++.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.079 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
.-|+|.|++|+|||+|++.+...
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 46899999999999999998763
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.059 Score=48.09 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
+-+.|-|+.|+||||+++.+++.+...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~~~ 29 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCEDW 29 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 458899999999999999999988543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.081 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|.+|+|||+|++.+...
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5999999999999999988763
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.82 E-value=0.17 Score=46.45 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
+.++-+++.|.-|+||||++-++|..+ |.++..+++.
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D 45 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 446778899999999999999999877 7777777653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.084 Score=44.25 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 010888 254 ILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~ 273 (498)
|++.|.+|+|||+|++.+..
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999876
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.51 E-value=0.097 Score=44.11 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|+|.|.+|+|||+|++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.09 Score=44.60 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|.+|+|||+|++.+..
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999999875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.098 Score=44.23 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.+++.|++|+|||+|++.+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998876
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.47 E-value=0.098 Score=44.60 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|.+|+|||+|++.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999876
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=0.092 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
.-|++.|++|+|||+|+..+...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35889999999999999988774
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.084 Score=44.70 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|++.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 3789999999999999988653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.11 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|.+|+|||+|++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.17 E-value=0.37 Score=42.94 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-.+|+|.-|+||||+.+.+.++.
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEeeCCCCCHHHHHHHHHhcC
Confidence 357899999999999999998864
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=88.81 E-value=0.96 Score=44.14 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=43.9
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
|..-+-+..+.++|.+.+.. ..+..+|.|-+|+|||+++.+++++.+.|++.|..+.
T Consensus 10 ~~p~gDQP~aI~~l~~~l~~-------------g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~ 66 (413)
T d1t5la1 10 YEPQGDQPQAIAKLVDGLRR-------------GVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNK 66 (413)
T ss_dssp SCCCTTHHHHHHHHHHHHHH-------------TCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSH
T ss_pred CCCCCCCHHHHHHHHHHHhc-------------CCCcEEEeCCCCcHHHHHHHHHHHHhCCCEEEEeCCH
Confidence 34444466677777776632 1257899999999999999999999999999887654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=88.80 E-value=0.1 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|.|.|+||+|||+|..++.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 599999999999999999974
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.79 E-value=0.12 Score=43.62 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|++.+...
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988763
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.77 E-value=0.19 Score=43.36 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH----hCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE----CKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~----l~~~~i~v~~ 284 (498)
+++|+.+|+|+|||.++-.++.. .+...+.+.+
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P 60 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 46889999999999876655543 2555555544
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=88.76 E-value=0.19 Score=43.65 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGP-PGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~Gp-pGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+.++++|- +|+|||+++-.+|..+ |..+..+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 56899998 5999999999999877 777777764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.63 E-value=0.11 Score=45.05 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
-|++.|++|+|||+|++.+...
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 3889999999999999998763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.62 E-value=0.11 Score=44.02 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
-|+|.|++|+|||+|++.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998865
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.51 E-value=0.13 Score=43.62 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.+++.|++|+|||+|++.+...
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998863
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.39 E-value=0.078 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~ 273 (498)
.-.|++.|++|+|||+|.+.+..
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999988743
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.36 E-value=0.1 Score=47.10 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
+..+|.|++|+|||+|..++........
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T 123 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRV 123 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhc
Confidence 5688999999999999999976554433
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.34 E-value=0.89 Score=42.18 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..++|.|++|||||+|+..+++..
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999999865
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=0.13 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
-.+++.|.+|+|||+|++.+...
T Consensus 6 iKivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.19 E-value=0.12 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
-|+|.|.+|+|||+|++.+.+.
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988773
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=88.12 E-value=0.12 Score=47.11 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+-|.||.|+|||||.+.++..+
T Consensus 25 v~~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 25 IEEGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555667899999999999999999876
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.01 E-value=0.079 Score=45.05 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=9.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|++.|.+|+|||+|++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999988765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.14 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|+|.|.+|+|||+|++.+.+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4889999999999999998763
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.54 E-value=0.11 Score=47.68 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+-|.||.|+|||||++.++...
T Consensus 27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 27 VNKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3455678899999999999999999866
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.26 E-value=0.15 Score=43.95 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
-|++.|++|+|||+|+..+...
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999888763
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.081 Score=44.93 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|++.+...
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999887653
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=86.94 E-value=0.11 Score=46.96 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++.-+-|.||.|+||||+.+.++..
T Consensus 22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 22 VRAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345567889999999999999999873
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=86.86 E-value=0.043 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-.+|+||.|+|||++..||.-.+.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 467889999999999999997763
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.82 E-value=0.16 Score=42.84 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|.|.|.||+|||+|..++.++
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999753
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=86.71 E-value=0.59 Score=38.49 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=23.5
Q ss_pred EEEEcCCCCcHHH-HHHHHHH--HhCCeEEEEecc
Q 010888 254 ILLFGPPGTGKTM-LAKAVAT--ECKTTFFNISAS 285 (498)
Q Consensus 254 vLL~GppGtGKT~-lAraia~--~l~~~~i~v~~s 285 (498)
-+++||=.+|||+ |.+.+.+ ..+.+++.++.+
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~ 39 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 39 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence 3689999999999 6666633 347777777654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.30 E-value=2.6 Score=38.55 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+..++|.|++|+|||+|+..+++..
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.21 E-value=0.18 Score=43.27 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAV 271 (498)
Q Consensus 253 ~vLL~GppGtGKT~lArai 271 (498)
-++|.|.+|+|||+|++.+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.08 E-value=0.16 Score=42.83 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~ 273 (498)
...|.|.|+|++|||+|.+++..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999998844
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.07 E-value=0.073 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|.|.|.||+|||+|+.++..+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=85.90 E-value=0.15 Score=43.49 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|-|.|+||+|||+|..++.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=85.58 E-value=0.22 Score=42.37 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
-.|.|.|.+|+|||+|+.++...
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=85.17 E-value=0.16 Score=43.20 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.|.|.|.||+|||+|+.++.+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999964
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.98 E-value=0.26 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|||.|++|+|||+|++.+...
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~ 29 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRIL 29 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999988654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.97 E-value=0.31 Score=41.54 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.-.|++.|++|+|||+|+..+...
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred cEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999988774
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=83.41 E-value=0.09 Score=47.68 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
.+..+|.|++|+|||+|+.++..+...
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~ 123 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGL 123 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----
T ss_pred cceEEEECCCCccHHHHHHhhccHhHh
Confidence 356678899999999999999765443
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=83.40 E-value=2 Score=35.96 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
+|-|.|.|++|||+|..++..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 688999999999999999975
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.35 E-value=0.35 Score=41.10 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++.|.+|+|||+|++.+...-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999996644
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.74 E-value=0.78 Score=41.45 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
+-+++.|.=|+||||++-.+|..+ |..+..+++.
T Consensus 21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D 57 (279)
T d1ihua2 21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57 (279)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 346677999999999988887766 7778777764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.67 E-value=0.32 Score=46.35 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..|.|-|+-|+||||+++.+++.++
T Consensus 7 ~rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 7 VRIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEEECCccCCHHHHHHHHHHHhc
Confidence 3578889999999999999999884
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.57 E-value=0.27 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.399 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
--+|+||.|+|||++..||+-.++
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~lg 49 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 458999999999999999976543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.41 E-value=0.4 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 010888 254 ILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~ 276 (498)
-+|+||.|+|||++..||+-.+|
T Consensus 28 ~~i~G~NGsGKS~ileAi~~~lg 50 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAISFVLG 50 (427)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999986554
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.01 E-value=0.18 Score=44.34 Aligned_cols=50 Identities=22% Similarity=0.113 Sum_probs=28.6
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhcc----CCCCCceEEEEcCCCCcHHHHH
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLA 268 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~----~~~~~~~vLL~GppGtGKT~lA 268 (498)
+|+++.=.+++.+.|.+. . ...+..... ..-.++.+++.+|+|+|||+.-
T Consensus 2 sF~~l~L~~~l~~~L~~~-g--~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay 55 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEA-G--FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAF 55 (206)
T ss_dssp CGGGGCCCHHHHHHHHHT-T--CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHH
T ss_pred ChHHcCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhh
Confidence 566765566666666653 1 111211111 0122368999999999999543
|