Citrus Sinensis ID: 010890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKYSFRKFNPY
cEEEEEccccccccccEEEEEEccEEEEEEcccccccccccccccccccHHHHccccccHHHHcccccccccccccccccccccccccccccccccEEEEccccccccccHHHcccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcHHHHHHHHccccccccccccccHHHHHHHHHccEEEccccEEEEcccEEEEEEccccccccEEEEEEccccEEEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccHHHHHcccccEEEEEccccccccHHHHHHHHHccccccEEEEcccccHHHHcccccccccEEEEEEccccccEEEEEcccc
cEEEEEEcccccccccEEEEEEcccEEEEcccccHHHHHHccccccccccccccccccHHHHHHHHHHcccccEEEcccccccccccccccHHHEEEEEEEccHHHcccHHHHEccccccEEEEccHHHHHHHHHHHHHHHHHHcccEccccccccccHHccHHHHHHccccHHHcEEcccccccccccccHHHHHHHHHcEEEEcccEEEEEccEEEEEEEEcccEEccHEEEEEEcccEEEEEccccccccccccHHHcccccccEEEEEccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccccEEEEEccccccccHHHHHHHHHccccccEEEEcccccHHHHcccccccEEEEEEEEEcccccccccccccc
mkftclcqgggfnfppchilnvsgfhvlfdcpldlsaltvfsplpndFYKAICKensdsqnrqkvekpldandlifaepwyktvnnlhlWNVSFIDVVLisspmgmlglpfltrmegfsAKIYITEAAARIGQLMMEELICMNMEYrqfygaeessgpqwmkwEELELLPSALRKIalgedgselgggcpciaHVKDCISKVqtlrfgeeacYNGILIIKAFSsgldigacnwiisgakgniayisgsnfasghamdfdyraiqgsdlilysdlssldstedidqssfsddnnNWEELMNSLSNYDESVEEMEKLAFICSCAIdsvkaggsvlipiNRVGVFLQLLEQIAIFMEcsslkipiYIISSVAEELLAYTNTIPEWLCKQRqeklfsgdplFAHVKLIKekkihvfpavhspkllmnwqepcivfsphwslrlgptihllrrwsgdhnsllVLENEvdaelavlpfkpisMKVLQCSflsgkkysfrkfnpy
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKEnsdsqnrqkvekPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDidqssfsddnnnWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCsflsgkkysfrkfnpy
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGsdlilysdlssldstedidQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKYSFRKFNPY
**FTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICK***************DANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDL*************************************MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKYSF******
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAIC******QNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFY**************************ALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEE***********VEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKYS*R*F*P*
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKYSFRKFNPY
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKYSFR*****
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MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKYSFRKFNPY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query498 2.2.26 [Sep-21-2011]
A7SBF0 660 Integrator complex subuni N/A no 0.877 0.662 0.286 3e-50
Q6DFF4 658 Integrator complex subuni N/A no 0.877 0.664 0.272 4e-50
Q5ZKK2 658 Integrator complex subuni yes no 0.873 0.661 0.271 7e-50
Q4R5Z4 637 Integrator complex subuni N/A no 0.845 0.660 0.277 2e-49
Q2KJA6 658 Integrator complex subuni yes no 0.873 0.661 0.273 6e-49
Q9NV88 658 Integrator complex subuni yes no 0.873 0.661 0.271 1e-48
Q8K114 658 Integrator complex subuni yes no 0.873 0.661 0.269 4e-47
Q54SH0 712 Integrator complex subuni yes no 0.877 0.613 0.257 6e-38
Q3MHC2 600 Integrator complex subuni no no 0.584 0.485 0.208 2e-08
Q9CWS4 600 Integrator complex subuni no no 0.584 0.485 0.208 3e-08
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1 Back     alignment and function desciption
 Score =  199 bits (507), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 243/495 (49%), Gaps = 58/495 (11%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP---NDFYKAICKENS 57
           MK  C+   G     PC +L     +++ DC LD+S +  F+PL    N+ +  +  ++ 
Sbjct: 1   MKLYCV---GHSVSSPCLVLQFKQTNIMLDCGLDMSTVNQFTPLSLVNNEKFSQL--KSW 55

Query: 58  DSQNRQKVEKPLDANDL--------IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGL 109
            S+  Q++E     N+L        I AEP         L + S +DV+LIS+   ML L
Sbjct: 56  SSRELQEIEGFTAQNNLKEAGGRLFIDAEPEVCPPET-GLIDFSMVDVILISNYHHMLAL 114

Query: 110 PFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169
           PF+T   GF+ KIY TE   +IG+ +M EL+            +  +G  W     +  L
Sbjct: 115 PFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNVIRCL 169

Query: 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG 229
           P+ L ++A  +    L         VK CISK+Q + + E+    GIL + A SSG  +G
Sbjct: 170 PAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSGFCLG 225

Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
           + NW++      I+Y+S S+  + H +  +   ++ SD+++ + ++              
Sbjct: 226 SSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA------------ 273

Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
                       + N D  + E       C+    +++AGG+VL+P    GV   L E +
Sbjct: 274 -----------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDLFECL 316

Query: 350 AIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKK 408
             +++ + L  +PIY IS VA+  LAY+N   EWLC+ +Q K++  +P F H +L+KE +
Sbjct: 317 YTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELLKEAR 376

Query: 409 IHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRW-SGDHNSLLVLENEVDAEL 467
           + VF  +H+     +++ PC+VF+ H SLR G  +H +  W    +N+++  E +     
Sbjct: 377 LKVFSNLHN-GFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFTEPDFPYLE 435

Query: 468 AVLPFKPISMKVLQC 482
           A+ P++P++MK   C
Sbjct: 436 ALAPYQPLAMKTCYC 450
Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.
Nematostella vectensis (taxid: 45351)
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2 Back     alignment and function description
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1 Back     alignment and function description
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1 Back     alignment and function description
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
359495046 774 PREDICTED: integrator complex subunit 9 0.993 0.639 0.649 0.0
255558732 705 conserved hypothetical protein [Ricinus 0.991 0.700 0.617 0.0
449457454 693 PREDICTED: integrator complex subunit 9 0.979 0.704 0.609 1e-169
356541557 794 PREDICTED: LOW QUALITY PROTEIN: integrat 0.975 0.612 0.580 1e-169
297829304 699 hypothetical protein ARALYDRAFT_896920 [ 0.977 0.696 0.561 1e-165
30680341 699 integrator complex subunit 9 [Arabidopsi 0.977 0.696 0.555 1e-157
449520481 680 PREDICTED: integrator complex subunit 9 0.853 0.625 0.629 1e-151
218192422 713 hypothetical protein OsI_10713 [Oryza sa 0.943 0.659 0.454 1e-124
222624545 713 hypothetical protein OsJ_10103 [Oryza sa 0.943 0.659 0.454 1e-124
108707119 719 expressed protein [Oryza sativa Japonica 0.943 0.653 0.448 1e-123
>gi|359495046|ref|XP_002265081.2| PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera] gi|296081277|emb|CBI17721.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/511 (64%), Positives = 397/511 (77%), Gaps = 16/511 (3%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYK--AICKENSD 58
           MKFTCL +GG F FPPCHI+ VSGF +L DCPLDLS+L +FSP+P   +    +   +S 
Sbjct: 82  MKFTCLSKGGNFYFPPCHIITVSGFRILLDCPLDLSSLMIFSPIPTHAFSNPELPSPDSV 141

Query: 59  SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGF 118
            Q RQK E+P+D+++LI A+PW+KTV +LHLWNV FIDVVLISSPMGMLGLPFL+R+ GF
Sbjct: 142 DQKRQKHERPIDSSELIRAQPWFKTVTSLHLWNVPFIDVVLISSPMGMLGLPFLSRVNGF 201

Query: 119 SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIAL 178
            AKIY+TE  ARIGQL+ME+L+ MN E+RQFYG EES  PQWM WE+LE LPS  R+I L
Sbjct: 202 RAKIYVTEVTARIGQLLMEDLVLMNKEFRQFYGCEESGLPQWMNWEKLESLPSLFREIVL 261

Query: 179 GEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236
           GEDG ELGG  P  +   VK C+ KV TL++ +E CYNG LIIKA SSGL+IG CNW I+
Sbjct: 262 GEDGVELGGWMPLYSADDVKGCMQKVHTLKYAQEVCYNGTLIIKAVSSGLEIGTCNWTIN 321

Query: 237 GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSS--LDSTED--------IDQS 286
           G K NIA +S S F S HAM+FDY A++G+DLI+YSDLSS  L+  +D          +S
Sbjct: 322 GPKRNIACLSSSIFNSSHAMNFDYHALRGNDLIIYSDLSSPVLEDVKDNSCYSAPTSQKS 381

Query: 287 SFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLL 346
           S    +N+ E     L +  ES+EEMEKL FICSC IDSVKAGGSVLIPI R+G+ LQLL
Sbjct: 382 STLSADNDQEASAELLLSTSESLEEMEKLNFICSCIIDSVKAGGSVLIPIGRLGIILQLL 441

Query: 347 EQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKE 406
           E I++ +E SSLK+PI+IISSVAEELLA+TN IPEWLCKQRQEKLFSG+P FAH +LIKE
Sbjct: 442 ELISLSLEASSLKVPIFIISSVAEELLAFTNIIPEWLCKQRQEKLFSGEPFFAHTQLIKE 501

Query: 407 KKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466
           KK+HVFPAVHSP LL  WQEPCI FSPHWSLRLGP +HLLRRWSGD NSLL++E  VDA+
Sbjct: 502 KKLHVFPAVHSPNLLKIWQEPCIAFSPHWSLRLGPVVHLLRRWSGDENSLLIMEEGVDAD 561

Query: 467 LAVLPFKPISMKVLQCSFLSGKKYSFRKFNP 497
           LA+LPFKP++MKVLQCSFLSG K   +K  P
Sbjct: 562 LALLPFKPMAMKVLQCSFLSGIK--LQKVQP 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558732|ref|XP_002520390.1| conserved hypothetical protein [Ricinus communis] gi|223540437|gb|EEF42006.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449457454|ref|XP_004146463.1| PREDICTED: integrator complex subunit 9 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541557|ref|XP_003539241.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like [Glycine max] Back     alignment and taxonomy information
>gi|297829304|ref|XP_002882534.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] gi|297328374|gb|EFH58793.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680341|ref|NP_187409.2| integrator complex subunit 9 [Arabidopsis thaliana] gi|332641036|gb|AEE74557.1| integrator complex subunit 9 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449520481|ref|XP_004167262.1| PREDICTED: integrator complex subunit 9 homolog, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|218192422|gb|EEC74849.1| hypothetical protein OsI_10713 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222624545|gb|EEE58677.1| hypothetical protein OsJ_10103 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|108707119|gb|ABF94914.1| expressed protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
TAIR|locus:2079696 699 AT3G07530 "AT3G07530" [Arabido 0.977 0.696 0.537 3.1e-147
ZFIN|ZDB-GENE-061013-129 658 ints9 "integrator complex subu 0.335 0.253 0.341 2e-46
UNIPROTKB|G3XAN1525 INTS9 "Integrator complex subu 0.327 0.310 0.325 7.3e-44
UNIPROTKB|Q9NV88 658 INTS9 "Integrator complex subu 0.327 0.247 0.325 2.6e-43
UNIPROTKB|Q5ZKK2 658 INTS9 "Integrator complex subu 0.327 0.247 0.319 4e-43
UNIPROTKB|F1MMA6 658 INTS9 "Integrator complex subu 0.327 0.247 0.331 4.6e-43
UNIPROTKB|Q2KJA6 658 INTS9 "Integrator complex subu 0.327 0.247 0.331 4.6e-43
UNIPROTKB|F6XI08 658 INTS9 "Uncharacterized protein 0.327 0.247 0.331 6.1e-43
MGI|MGI:1098533 658 Ints9 "integrator complex subu 0.327 0.247 0.319 9.4e-42
RGD|1311539 659 Ints9 "integrator complex subu 0.327 0.247 0.319 2.5e-41
TAIR|locus:2079696 AT3G07530 "AT3G07530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
 Identities = 272/506 (53%), Positives = 362/506 (71%)

Query:     1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPN----DFYKAICKEN 56
             M+ TCL +G GF++PPCH+LN+ GF +L DCPLDLSA+ +FSP+P+    +  + +  E+
Sbjct:     1 MELTCLSKGDGFHYPPCHMLNLCGFRILIDCPLDLSAIKIFSPVPSGVGSEASEYLSDES 60

Query:    57 SDSQN----RQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFL 112
              D+QN    +QK+E+ L   DL+  EPWYKTV  LHLW  SFID+VLIS+PMG+LGLPFL
Sbjct:    61 LDAQNPIQKKQKLERQLTCADLVCEEPWYKTVKALHLWEASFIDIVLISNPMGLLGLPFL 120

Query:   113 TRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172
             T+  GF AKIY+TE  A+IGQLMME+++ M+ E+R F+G + SS P W+K  + E +P+ 
Sbjct:   121 TQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEFRCFHGPDNSSFPGWIKNLDSEQVPAL 180

Query:   173 LRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGA 230
             L+K+  GE G +LG      +   ++ C+ KVQ ++F EE CYNG LIIKA SSGLDIGA
Sbjct:   181 LKKVVFGESGDDLGSWMRLYSLDDIESCMKKVQGVKFAEEVCYNGTLIIKALSSGLDIGA 240

Query:   231 CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGXXXXXXXXXXXXXXXXXXXQSSFS- 289
             CNW+I+G  G+++Y+S S F S HA  FD+  ++                        S 
Sbjct:   241 CNWLINGPNGSLSYVSDSIFVSHHARSFDFHGLKETDVLIYSDFSSLQSAEVTEDGCISP 300

Query:   290 DDNNNW----EELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQL 345
             D +NN+     +  +SL N ++S+EEMEKLAF+CSCA +S  AGGS LI I R+G+ LQL
Sbjct:   301 DSDNNYISTISDNKDSLLNTEDSLEEMEKLAFVCSCAAESADAGGSTLITITRIGIVLQL 360

Query:   346 LEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIK 405
             LE ++  +E SSLK+PI++ISSVAEELLAYTNTIPEWLC+QRQEKL SG+P F H+K IK
Sbjct:   361 LELLSNSLESSSLKVPIFVISSVAEELLAYTNTIPEWLCEQRQEKLISGEPSFGHLKFIK 420

Query:   406 EKKIHVFPAVHSPKLLM----NWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLEN 461
              KKIH+FPA+HSP L+     +WQEPCIVF+ HWSLRLGP++ LL+RW GD  SLLVLE+
Sbjct:   421 NKKIHLFPAIHSPNLIYANRTSWQEPCIVFASHWSLRLGPSVQLLQRWRGDPKSLLVLED 480

Query:   462 EVDAELAVLPFKPISMKVLQCSFLSG 487
              + + L +LPF+PI+MK+LQCSFLSG
Sbjct:   481 GISSGLGLLPFRPIAMKILQCSFLSG 506
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-061013-129 ints9 "integrator complex subunit 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3XAN1 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NV88 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKK2 INTS9 "Integrator complex subunit 9" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6XI08 INTS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1098533 Ints9 "integrator complex subunit 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311539 Ints9 "integrator complex subunit 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
smart01027126 smart01027, Beta-Casp, Beta-Casp domain 9e-16
pfam10996124 pfam10996, Beta-Casp, Beta-Casp domain 1e-13
COG1236427 COG1236, YSH1, Predicted exonuclease of the beta-l 3e-07
COG1782637 COG1782, COG1782, Predicted metal-dependent RNase, 4e-06
TIGR03675630 TIGR03675, arCOG00543, arCOG00543 universal archae 4e-04
>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain Back     alignment and domain information 
 Score = 73.3 bits (181), Expect = 9e-16
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 342 FLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD--PLF 398
             +LL  +        L  +PIY+ S +A        + PEW+  + +++   G     F
Sbjct: 1   TQELLLILEELWREGELPNVPIYLDSPMAARATEIYKSYPEWMSDEIRKRFEQGRNPFDF 60

Query: 399 AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLV 458
            ++K +K  +          K L +++ P ++ +    L  G + H L+R + D  + ++
Sbjct: 61  KNLKFVKSLEES--------KRLNDYKGPKVIIASSGMLTGGRSRHYLKRLAPDPRNTVI 112

Query: 459 L 459
           L
Sbjct: 113 L 113

The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains. Length = 126
>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain Back     alignment and domain information
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 498
KOG1138 653 consensus Predicted cleavage and polyadenylation s 100.0
COG1782637 Predicted metal-dependent RNase, consists of a met 100.0
KOG1136 501 consensus Predicted cleavage and polyadenylation s 100.0
TIGR03675630 arCOG00543 arCOG00543 universal archaeal KH-domain 100.0
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 100.0
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 100.0
COG1236427 YSH1 Predicted exonuclease of the beta-lactamase f 100.0
TIGR00649422 MG423 conserved hypothetical protein. Contains an 99.96
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.88
PF10996126 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T 99.85
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.71
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.66
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.61
PRK02113252 putative hydrolase; Provisional 99.59
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.58
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.57
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.54
PRK00055270 ribonuclease Z; Reviewed 99.49
PRK00685228 metal-dependent hydrolase; Provisional 99.4
PRK04286298 hypothetical protein; Provisional 99.35
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.32
PRK02126334 ribonuclease Z; Provisional 99.31
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 99.28
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.22
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 98.93
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 98.92
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 98.85
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 98.75
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 98.71
KOG1361481 consensus Predicted hydrolase involved in interstr 98.68
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 98.55
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 98.5
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 98.48
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.45
PLN02469258 hydroxyacylglutathione hydrolase 98.36
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 98.28
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 98.26
PRK11539755 ComEC family competence protein; Provisional 98.25
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 98.21
PLN02398329 hydroxyacylglutathione hydrolase 98.2
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 98.16
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.13
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 98.01
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 97.95
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 97.94
PLN02962251 hydroxyacylglutathione hydrolase 97.92
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 97.61
KOG0813265 consensus Glyoxylase [General function prediction 96.36
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 95.4
PF1369163 Lactamase_B_4: tRNase Z endonuclease 93.6
KOG3592 934 consensus Microtubule-associated proteins [Cytoske 90.04
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 87.94
KOG1137668 consensus mRNA cleavage and polyadenylation factor 80.75
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-73  Score=564.46  Aligned_cols=449  Identities=33%  Similarity=0.573  Sum_probs=398.7

Q ss_pred             CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccc----hhhc--cccCCCCcccc
Q 010890            1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDS----QNRQ--KVEKPLDANDL   74 (498)
Q Consensus         1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~d~~~l   74 (498)
                      |+++++.+.   .+-.|.++++.+.|||+|||+++....+|+|.+...+|++.+.++-+    .+..  ++.++|+.+.+
T Consensus         1 M~~t~~sv~---~t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvf   77 (653)
T KOG1138|consen    1 MEGTIGSVS---STYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVF   77 (653)
T ss_pred             CceEEEeec---cCCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceE
Confidence            788888776   36899999999999999999999999999999877777764433322    2211  45788899999


Q ss_pred             cccccccccccccccccCCcccEEEecCCCCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 010890           75 IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE  154 (498)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~ID~IlISH~DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~  154 (498)
                      .++.|++..|+ .+.++.+.||+||||++..+.||||++++.||.|+||+|++|+++|+++|+|++.+.++     -+..
T Consensus        78 vesppe~~l~~-t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier-----~p~~  151 (653)
T KOG1138|consen   78 VESPPEFTLPA-THLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIER-----FPKA  151 (653)
T ss_pred             EcCCchhccch-hhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHh-----cccc
Confidence            88777776664 45678999999999999999999999999999999999999999999999999988775     3677


Q ss_pred             CCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCch--HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEE
Q 010890          155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC--IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN  232 (498)
Q Consensus       155 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~  232 (498)
                      ++.+.|++..+...+|++++++.+      ...|+++  .+|++.|+++++.+.|.|++.+.|-+.||++.+||.+||++
T Consensus       152 ~S~~~Wk~k~~~~~lpsplk~~~~------~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsn  225 (653)
T KOG1138|consen  152 SSAPLWKKKLDSELLPSPLKKAVF------LGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSN  225 (653)
T ss_pred             ccchhhhhhhhhhhcCCCchhhcc------ccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccc
Confidence            888999999777878877765321      4489998  99999999999999999999998899999999999999999


Q ss_pred             EEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHH
Q 010890          233 WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEM  312 (498)
Q Consensus       233 ~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~  312 (498)
                      |.|.+..+++.|+||.+....|+.++|.+.++.+|+||++++++++       .++   .                 .  
T Consensus       226 W~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~-------tan---p-----------------d--  276 (653)
T KOG1138|consen  226 WLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLP-------TAN---P-----------------D--  276 (653)
T ss_pred             eEEecCCcceEEEecCcccccCCccccccccccccEEEEecccccc-------cCC---c-----------------c--
Confidence            9999999999999998888889999999999999999999998876       111   0                 1  


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhh
Q 010890          313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL  391 (498)
Q Consensus       313 ~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~  391 (498)
                      ++..+||..|..+++++|+||+|+++.|.+.||++.|.+....+++ ++|||++||+|+..+++.++..|||+..+|+++
T Consensus       277 ~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkv  356 (653)
T KOG1138|consen  277 EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKV  356 (653)
T ss_pred             chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccce
Confidence            1456789999999999999999999999999999999999999988 899999999999999999999999999999999


Q ss_pred             ccCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEc-CCCChhhhcC
Q 010890          392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELAVL  470 (498)
Q Consensus       392 ~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~-~~~~~~~~~~  470 (498)
                      +.|+.||+|..+++++||+++.++.+ .+.+.++.|||||++|.+++.|++.++++-|..+|+|++|+| |.++..++++
T Consensus       357 ylpe~p~~hs~lI~~~rlkiy~sl~g-~fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~  435 (653)
T KOG1138|consen  357 YLPEAPFPHSTLITINRLKIYLSLLG-LFSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLA  435 (653)
T ss_pred             eccCCCCCCceEEeecceeehHHHHH-HHhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhc
Confidence            99999999999999999999999886 478999999999999999999999999999999999999986 6799999999


Q ss_pred             CCcccceeEEEccccccccccccccC
Q 010890          471 PFKPISMKVLQCSFLSGKKYSFRKFN  496 (498)
Q Consensus       471 p~~~~~~~~~~~~~~~~~~~~~~~~~  496 (498)
                      ||||+.||+|+|||+.+.+  |||++
T Consensus       436 PfrpLamK~i~cpidtrln--fqql~  459 (653)
T KOG1138|consen  436 PFRPLAMKIIYCPIDTRLN--FQQLP  459 (653)
T ss_pred             CCccccceeEecccccccc--HHHHH
Confidence            9999999999999999876  56543

>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
3af5_A651 The Crystal Structure Of An Archaeal Cpsf Subunit, 7e-05
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 310 EEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVA 369
           EE EK   +     +++K GG VLIP   VG   +++  +  +     +++PIY+   + 
Sbjct: 406 EEAEKR--LIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIW 463
Query: 370 EELLAYTNTIPEWLCKQRQEKLFSG--DPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEP 427
           E    +T   PE+L ++ +E++F    +P  + +        H        + +++  EP
Sbjct: 464 EATAIHT-AYPEYLSRRLREQIFKEGYNPFLSEI-------FHPVANSRERQDIIDSNEP 515
Query: 428 CIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELA 468
            I+ +    L  GP++   ++ + D  NS++ +  + +  L 
Sbjct: 516 AIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLG 557

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 8e-30
2i7t_A459 Cleavage and polyadenylation specificity factor 73 2e-11
3af5_A651 Putative uncharacterized protein PH1404; archaeal 3e-10
2xr1_A640 Cleavage and polyadenylation specificity factor 1 2e-08
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 6e-06
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Back     alignment and structure
 Score =  122 bits (307), Expect = 8e-30
 Identities = 58/477 (12%), Positives = 128/477 (26%), Gaps = 129/477 (27%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
           M +   C   G       ++      +L D   + S ++    +                
Sbjct: 1   MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEK----------- 49

Query: 61  NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP----MGMLGLPFLTRME 116
                                          +  IDV+++S P    +G   L +     
Sbjct: 50  ------------------------------VIPEIDVIILSQPTIECLGAHSLLYYNFTS 79

Query: 117 --GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALR 174
                 ++Y T     +G++   +                S+G                 
Sbjct: 80  HFISRIQVYATLPVINLGRVSTIDSY-------------ASAGVIGPYDTNKL------- 119

Query: 175 KIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIKAFSSGLDIGAC 231
                            +  ++     +  L++ +          L + A+++G+  G  
Sbjct: 120 ----------------DLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGS 163

Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
            W IS     + Y    N             +  + ++        D+T     +     
Sbjct: 164 IWCISTYSEKLVYAKRWNHT-------RDNILNAASIL--------DATGKPLSTLMRPS 208

Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
                 ++ +L  +  S    ++           + + GSV+IP++  G FL L  Q+  
Sbjct: 209 A-----IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHE 263

Query: 352 FMECSS-----LKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD----PLFAHVK 402
            +  S+      ++P+ I+S      L Y  ++ EWL     +   + +           
Sbjct: 264 LLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSRI 323

Query: 403 LIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 459
            I            +P  L  +    I F             ++ +      + L+L
Sbjct: 324 KI-----------IAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLIL 366
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 100.0
2i7t_A459 Cleavage and polyadenylation specificity factor 73 100.0
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 100.0
3af5_A651 Putative uncharacterized protein PH1404; archaeal 100.0
2xr1_A640 Cleavage and polyadenylation specificity factor 1 100.0
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 100.0
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 100.0
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.97
2az4_A429 Hypothetical protein EF2904; structural genomics, 99.92
4b87_A367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.86
3zdk_A336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.85
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.75
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.74
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.71
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.71
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.67
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.62
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.6
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.6
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.49
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.33
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.28
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.27
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.26
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.26
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.26
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.25
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.25
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.24
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.21
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.17
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.16
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.14
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.1
4efz_A298 Metallo-beta-lactamase family protein; structural 99.09
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.06
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.03
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.02
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.01
2bib_A547 CBPE, teichoic acid phosphorylcholine esterase/ ch 98.99
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 98.99
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 98.96
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 98.96
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 98.96
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 98.95
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 98.95
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 98.94
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 98.91
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 98.89
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 98.89
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 98.87
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 98.87
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 98.87
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 98.85
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 98.83
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 98.83
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 98.8
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 98.79
1xm8_A254 Glyoxalase II; structural genomics, protein struct 98.79
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 98.79
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 98.78
3r2u_A466 Metallo-beta-lactamase family protein; structural 98.77
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.74
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 98.67
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 98.67
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 98.6
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.25
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 98.19
2cfu_A658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 97.98
2yhe_A668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 96.87
3h3e_A267 Uncharacterized protein TM1679; structural genomic 97.26
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-58  Score=483.33  Aligned_cols=364  Identities=21%  Similarity=0.222  Sum_probs=297.9

Q ss_pred             CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890            1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW   80 (498)
Q Consensus         1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~   80 (498)
                      |+|++|||+ +++|+||++|+.++.+||+|||+..+...         .                          ...  
T Consensus         1 M~i~~LG~~-~~vg~s~~li~~~~~~iLID~G~~~~~~~---------~--------------------------~~~--   42 (431)
T 3iek_A            1 MRIVPFGAA-REVTGSAHLLLAGGRRVLLDCGMFQGKEE---------A--------------------------RNH--   42 (431)
T ss_dssp             CEEEECSCS-SSSSCCCEEEEETTEEEEECCCCCCGGGG---------G--------------------------GGG--
T ss_pred             CEEEEeCCC-CCCCCcEEEEEECCeEEEEeCCCCcchhh---------c--------------------------cch--
Confidence            999999999 89999999999999999999999533100         0                          000  


Q ss_pred             cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890           81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP  158 (498)
Q Consensus        81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~  158 (498)
                           ....++..+||+|||||+  ||+|+||+|.+ .++++|||+|++|.++++.++.|..++++.             
T Consensus        43 -----~~~~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~-------------  103 (431)
T 3iek_A           43 -----APFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATRATVLLMEIVLEDALKVMDE-------------  103 (431)
T ss_dssp             -----SCCSSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHCSS-------------
T ss_pred             -----hhcCCCcccCCEEEECCCChHHhccHHHHHH-cCCCCeEEEcHHHHHHHHHHHHHHHhhccc-------------
Confidence                 012246779999999999  99999999998 678999999999999999988876543210             


Q ss_pred             ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeC
Q 010890          159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA  238 (498)
Q Consensus       159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~  238 (498)
                                                 +.|.  .+|+..++.+++.+++++++++ ++++|+++++||++|+++|.|+.+
T Consensus       104 ---------------------------~~y~--~~~~~~~~~~~~~l~~~~~~~l-~g~~v~~~~agH~~Gs~~~~i~~~  153 (431)
T 3iek_A          104 ---------------------------PFFG--PEDVEEALGHLRPLEYGEWLRL-GALSLAFGQAGHLPGSAFVVAQGE  153 (431)
T ss_dssp             ---------------------------CSSC--HHHHHHHHHTEEECCTTCCEEE-TTEEEEEEECCSSTTCEEEEEEET
T ss_pred             ---------------------------CCCC--HHHHHHHHhccEEcCCCCeEEe-CCEEEEEEeCCCCcCceEEEEEEC
Confidence                                       0111  7888888889999999999999 899999999999999999999999


Q ss_pred             CeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHHH
Q 010890          239 KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFI  318 (498)
Q Consensus       239 ~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~~  318 (498)
                      +++|+| |||++....+...++....++|+||+              |+||+++.|.         .+     .++.++|
T Consensus       154 ~~~ilf-sGD~~~~~~~~l~~~~~~~~~D~LI~--------------EsTy~~~~h~---------~~-----~~~~~~l  204 (431)
T 3iek_A          154 GRTLVY-SGDLGNREKDVLPDPSLPPLADLVLA--------------EGTYGDRPHR---------PY-----RETVREF  204 (431)
T ss_dssp             TEEEEE-CCCCCCTTSSSSCCCCBCCCCSEEEE--------------ECTTTTCCCC---------CH-----HHHHHHH
T ss_pred             CEEEEE-eCCCCCCCCcccCCccccCCccEEEE--------------EcccCCcCCC---------Ch-----HHHHHHH
Confidence            999999 99998765554445566789999999              9999998774         21     1234567


Q ss_pred             HHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 010890          319 CSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL  397 (498)
Q Consensus       319 ~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~p  397 (498)
                      ++.|.+++++||+||||+|++||+|||+.+|.++|++  + ++|||++||||.+++++|+.+.|||+++.++.+..+++|
T Consensus       205 ~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p  282 (431)
T 3iek_A          205 LEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNP  282 (431)
T ss_dssp             HHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCC
Confidence            8889999999999999999999999999999999987  6 799999999999999999999999999999988888899


Q ss_pred             CcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChhh----------
Q 010890          398 FAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAEL----------  467 (498)
Q Consensus       398 F~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~~----------  467 (498)
                      |.+      .++++..+.++++.++..++||||||++|||++|+++++|+.|+.||+|+||||||+.+.-          
T Consensus       283 f~~------~~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~~~  356 (431)
T 3iek_A          283 FRP------AGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPP  356 (431)
T ss_dssp             TCC------TTEEECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTCCS
T ss_pred             CCC------CCeEEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcCCc
Confidence            854      2344444455555566678999999999999999999999999999999999998875441          


Q ss_pred             hcCCC---cccceeEEEccccccc
Q 010890          468 AVLPF---KPISMKVLQCSFLSGK  488 (498)
Q Consensus       468 ~~~p~---~~~~~~~~~~~~~~~~  488 (498)
                      .+..+   -+++++|-...-.|+|
T Consensus       357 ~v~~~g~~~~v~a~v~~~~~~saH  380 (431)
T 3iek_A          357 AVRILGEEVPLRASVHTLGGFSGH  380 (431)
T ss_dssp             EEEETTEEEECCSEEEECGGGCSS
T ss_pred             EEEECCEEEEEEEEEEEECCcccc
Confidence            11112   1267777776555655
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 498
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 3e-26
d2dkfa1431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 6e-08
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 4e-06
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (273), Expect = 3e-26
 Identities = 53/475 (11%), Positives = 125/475 (26%), Gaps = 125/475 (26%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
           M +   C   G       ++      +L D   + S ++    +                
Sbjct: 1   MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEK----------- 49

Query: 61  NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP----MGMLGLPFLTRME 116
                                          +  IDV+++S P    +G      L    
Sbjct: 50  ------------------------------VIPEIDVIILSQPTIECLG--AHSLLYYNF 77

Query: 117 ----GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172
                   ++Y T     +G++   +          +   +                   
Sbjct: 78  TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLD----------------- 120

Query: 173 LRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIKAFSSGLDIG 229
                              +  ++     +  L++ +          L + A+++G+  G
Sbjct: 121 -------------------LEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPG 161

Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
              W IS     + Y       +          +  + ++  +                 
Sbjct: 162 GSIWCISTYSEKLVY-------AKRWNHTRDNILNAASILDATGKPLSTLMRPSA----- 209

Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
                   ++ +L  +  S    ++           + + GSV+IP++  G FL L  Q+
Sbjct: 210 --------IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQV 261

Query: 350 AIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLI 404
              +  S+      ++P+ I+S      L Y  ++ EWL     +   + +         
Sbjct: 262 HELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF---- 317

Query: 405 KEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 459
              +I     + +P  L  +    I F             ++ +      + L+L
Sbjct: 318 ---EIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLIL 366
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 100.0
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 100.0
d2i7ta1451 Cleavage and polyadenylation specificity factor su 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.74
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.61
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 99.54
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 99.53
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.28
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.14
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.08
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 99.02
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.02
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 98.98
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 98.91
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 98.87
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 98.82
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 98.63
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 98.63
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 98.48
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 98.48
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.36
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 98.31
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.29
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.12
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.07
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.95
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 97.92
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 97.86
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 97.67
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.66
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 97.65
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-54  Score=460.03  Aligned_cols=345  Identities=14%  Similarity=0.184  Sum_probs=264.7

Q ss_pred             eEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccc
Q 010890            2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY   81 (498)
Q Consensus         2 ~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~   81 (498)
                      +++|+|.+  ..+++|++|++++.+||||||++.+.        ....                          . .+. 
T Consensus         4 ~~~~~~~g--~g~~sc~ll~~~~~~iLlDcG~~~~~--------~~~~--------------------------~-~~~-   45 (514)
T d2i7xa1           4 KYNCCDDG--SGTTVGSVVRFDNVTLLIDPGWNPSK--------VSYE--------------------------Q-CIK-   45 (514)
T ss_dssp             EEEECCSS--SSSCCCEEEEETTEEEEECCCCCTTT--------SCHH--------------------------H-HHH-
T ss_pred             EEEEecCC--CceeeEEEEEECCeEEEEECCCCcCc--------cchh--------------------------h-hhh-
Confidence            35566544  34789999999999999999997442        0000                          0 011 


Q ss_pred             ccccccccccCCcccEEEecCC--CCCCccchhccc----cCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 010890           82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM----EGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES  155 (498)
Q Consensus        82 ~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~----~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~  155 (498)
                           .+...+++||||||||+  ||+||||+|++.    .++++|||||+||+++++.+|.|.++.++...        
T Consensus        46 -----~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~~--------  112 (514)
T d2i7xa1          46 -----YWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIG--------  112 (514)
T ss_dssp             -----HHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSS--------
T ss_pred             -----hhhcCcccCCEEEECCCChHHHCchHHHHHhcccccCCCcCEEeCHHHHHHHHHHHHHHHHHhhhhc--------
Confidence                 12235779999999999  999999999874    25689999999999999999999876543100        


Q ss_pred             CCcccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEec---CCEEEEEEecCCCCccE
Q 010890          156 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYN---GILIIKAFSSGLDIGAC  231 (498)
Q Consensus       156 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~---~~~~i~~~~aGH~lGs~  231 (498)
                                                .  . ....+ .+|++.++++++.++|+|++++.   .++++++++|||++|||
T Consensus       113 --------------------------~--~-~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilGsa  163 (514)
T d2i7xa1         113 --------------------------P--Y-DTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGS  163 (514)
T ss_dssp             --------------------------S--B-TTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCE
T ss_pred             --------------------------c--c-ccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCCce
Confidence                                      0  0 11123 89999999999999999999994   37999999999999999


Q ss_pred             EEEEEeCCeEEEEecCCCCCCCCCCCCccc---------CCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhcc
Q 010890          232 NWIISGAKGNIAYISGSNFASGHAMDFDYR---------AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSL  302 (498)
Q Consensus       232 ~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~---------~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~  302 (498)
                      +|.|++++++|+| |||++....+......         .....|.+++              ++||+...+.       
T Consensus       164 ~~~I~~~~~~Ivy-tGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli--------------~~t~~~~~~~-------  221 (514)
T d2i7xa1         164 IWCISTYSEKLVY-AKRWNHTRDNILNAASILDATGKPLSTLMRPSAII--------------TTLDRFGSSQ-------  221 (514)
T ss_dssp             EEEEECSSCEEEE-CSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEE--------------ECCSCCCCSS-------
T ss_pred             EEEEEECCeEEEE-EeccCCCCCccCCCccccccccccccccCCCEEEE--------------EcCCCCCCCC-------
Confidence            9999999999999 9999764433211111         1224566777              6788776653       


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCC----C-ceeEEEEcccHHHHHHHHH
Q 010890          303 SNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS----L-KIPIYIISSVAEELLAYTN  377 (498)
Q Consensus       303 ~~~~~~~~~~~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~----l-~~pIy~~s~~a~~~~~~~~  377 (498)
                        ++.     ++.+.|++.|.+++++||+||||+|++||+||||.+|+++|.+..    + ++|||++|+++.+++++|+
T Consensus       222 --~~~-----~~~~~l~~~i~~~~~~gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~  294 (514)
T d2i7xa1         222 --PFK-----KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAK  294 (514)
T ss_dssp             --CHH-----HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHH
T ss_pred             --ChH-----HHHHHHHHHHHHHHhCCCEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHH
Confidence              211     233567889999999999999999999999999999999998753    2 6899999999999999999


Q ss_pred             HHHHHHHHHHHHhhc--cCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCc
Q 010890          378 TIPEWLCKQRQEKLF--SGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNS  455 (498)
Q Consensus       378 ~~~ewl~~~~~~~~~--~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n  455 (498)
                      ++.|||++..++.+.  .+.+||.+..+      ..   +.+.+.+...++|||||||++|   |.+.++|++|++||+|
T Consensus       295 ~~~e~~~~~~~~~~~~~~~~~pf~~~~~------~~---i~~~~~l~~~~~p~VIiat~~~---G~~~~~l~~~a~d~~n  362 (514)
T d2i7xa1         295 SMLEWLSPSLLKTWENRNNTSPFEIGSR------IK---IIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKT  362 (514)
T ss_dssp             TCGGGSCHHHHHHHHSSSSCCTTCCTTT------EE---ECCGGGGGGCCSCEEEEEESCH---HHHHHHHHHHSSCTTE
T ss_pred             HhHhhcCHHHHHHHhhhcCCCchhccCc------ee---ccCHHHHHhccCCcEEEEcCCC---chHHHHHHHHhcCCCC
Confidence            999999999888764  45678754221      11   2234456678899999999987   9999999999999999


Q ss_pred             eEEEc-CCCChhh
Q 010890          456 LLVLE-NEVDAEL  467 (498)
Q Consensus       456 ~Iil~-~~~~~~~  467 (498)
                      +|+|| +.|+.++
T Consensus       363 ~Vi~t~~g~~~~~  375 (514)
T d2i7xa1         363 TLILTKPSFECAS  375 (514)
T ss_dssp             EEEECSSCCTTCH
T ss_pred             EEEEecCCCcccc
Confidence            99998 3444443
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure