Citrus Sinensis ID: 010918

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MDDASSLDISLSEDVLQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNSREGTFSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEVDKNTRRAKLVNVPSKA
ccccccccccccHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHcccEEEEccccccEEEEEccccc
cccccEHcccccHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHccccHHHccHHEEEEEHHccccHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHccccHEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHcccEEEEEccccEEEEEEccccc
mddassldislsedvlqpllttsnsssLKDALEILIESskttvgrsdlasknilpevlqltqsiphssgCHYLLLSLKLLRNLCageitnqksfiEQTGVGIVLRVLrspgvnldkdyGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAgvrcqetcdplcmviytccdgssglfkelcgDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTcveeihfpQLFFKLSqvgasrncedsnsregtfsSEQAFLLEIVSEIVNERIeeiivpndfalSVLGIFTKSIglvdfyargtpslptsssaiNVLGYSLSILRNICaredpagsssvnrADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRqgenqegtsaksaktcpyigfRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQcvtdednpfsreWGIWCVRNLLEGNAENQKVVADLElqgsinvpeltdlglkvevdkntrraklvnvpska
mddassldislsedvlqpllttsnssslkDALEILIESskttvgrsdlASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNqksfieqtgVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNsregtfsseQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREdpagsssvnRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMrqgenqegtsaksaktcpyiGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQgsinvpeltdlglkvevdkntrraklvnvpska
MDDASSLDISLSEDVLQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYlllslkllrnlCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNSREGTFSSEQAFLLeivseivnerieeiivPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEVDKNTRRAKLVNVPSKA
*********************************ILI*************SKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVG******************QAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAR*************LVDSLQSHGLIEMFLSLLRDLEPPAII******************KTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEV****************
**********LSEDVLQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNSREGTFSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDPA****VNRADLVDSLQSHGLIEMFLSLLRDLE*************************CPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVA**********PELTDLGLKV***********V******
********ISLSEDVLQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQV***************FSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICARE********NRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQ***********AKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEVDKNTRRAKLVNVPSKA
*****SLDISLSEDVLQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNSREGTFSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQ************KTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEVDKNTRRAKLVNVP***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDDASSLDISLSEDVLQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNSREGTFSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEVDKNTRRAKLVNVPSKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q55EI6609 Ataxin-10 homolog OS=Dict yes no 0.211 0.172 0.433 5e-19
P28658475 Ataxin-10 OS=Mus musculus yes no 0.786 0.823 0.257 7e-18
Q5FVB0485 Ataxin-10 OS=Xenopus trop yes no 0.722 0.740 0.249 8e-18
Q5RE06476 Ataxin-10 OS=Pongo abelii yes no 0.722 0.754 0.248 3e-16
Q9UBB4475 Ataxin-10 OS=Homo sapiens yes no 0.722 0.755 0.255 4e-16
Q2TBW0475 Ataxin-10 OS=Bos taurus G yes no 0.140 0.147 0.411 3e-15
Q9ER24475 Ataxin-10 OS=Rattus norve yes no 0.171 0.178 0.411 1e-14
Q4R4Y2475 Ataxin-10 OS=Macaca fasci N/A no 0.171 0.178 0.411 1e-14
Q75EM1534 Copper transport protein yes no 0.173 0.161 0.406 6e-13
Q6BKV2489 Copper transport protein yes no 0.289 0.294 0.326 7e-13
>sp|Q55EI6|ATX10_DICDI Ataxin-10 homolog OS=Dictyostelium discoideum GN=atxn10 PE=3 SV=1 Back     alignment and function desciption
 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 391 GFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEG 450
           GF+ +L+ ++GN +Y+ +  QDEIRE  GI ++L  C  D +NP+ +EW ++ +RNL E 
Sbjct: 499 GFKIELIRILGNLSYKNRGNQDEIRELGGIEIILNHCRFDVNNPYIKEWSVFAIRNLCED 558

Query: 451 NAENQKVVADLELQGSINVPELTDLGLKVEVDKNTRRAKLVNVPSK 496
           N ENQ ++  L+++G  N  EL DLGL+V V +N    K  NVP K
Sbjct: 559 NVENQNLIESLKVKGVANNDELKDLGLEVGVTENG-TIKFKNVPKK 603

Dictyostelium discoideum (taxid: 44689)
>sp|P28658|ATX10_MOUSE Ataxin-10 OS=Mus musculus GN=Atxn10 PE=1 SV=2 Back     alignment and function description
>sp|Q5FVB0|ATX10_XENTR Ataxin-10 OS=Xenopus tropicalis GN=atxn10 PE=2 SV=1 Back     alignment and function description
>sp|Q5RE06|ATX10_PONAB Ataxin-10 OS=Pongo abelii GN=ATXN10 PE=2 SV=1 Back     alignment and function description
>sp|Q9UBB4|ATX10_HUMAN Ataxin-10 OS=Homo sapiens GN=ATXN10 PE=1 SV=1 Back     alignment and function description
>sp|Q2TBW0|ATX10_BOVIN Ataxin-10 OS=Bos taurus GN=ATXN10 PE=2 SV=1 Back     alignment and function description
>sp|Q9ER24|ATX10_RAT Ataxin-10 OS=Rattus norvegicus GN=Atxn10 PE=1 SV=1 Back     alignment and function description
>sp|Q4R4Y2|ATX10_MACFA Ataxin-10 OS=Macaca fascicularis GN=ATXN10 PE=2 SV=1 Back     alignment and function description
>sp|Q75EM1|CTR86_ASHGO Copper transport protein 86 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CTR86 PE=3 SV=1 Back     alignment and function description
>sp|Q6BKV2|CTR86_DEBHA Copper transport protein 86 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CTR86 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
255541420497 conserved hypothetical protein [Ricinus 0.979 0.979 0.609 1e-165
225431487494 PREDICTED: uncharacterized protein LOC10 0.989 0.995 0.627 1e-156
224130096496 predicted protein [Populus trichocarpa] 0.987 0.989 0.599 1e-155
356530187494 PREDICTED: LOW QUALITY PROTEIN: ataxin-1 0.971 0.977 0.569 1e-148
356566800498 PREDICTED: ataxin-10-like [Glycine max] 0.983 0.981 0.576 1e-146
357507049491 Ataxin-10 [Medicago truncatula] gi|35549 0.969 0.981 0.542 1e-142
297814315474 hypothetical protein ARALYDRAFT_490543 [ 0.941 0.987 0.540 1e-138
18411256475 maternal effect embryo arrest 50 protein 0.943 0.987 0.526 1e-133
449461251469 PREDICTED: uncharacterized protein LOC10 0.923 0.978 0.522 1e-123
242042465460 hypothetical protein SORBIDRAFT_01g04930 0.909 0.982 0.442 2e-93
>gi|255541420|ref|XP_002511774.1| conserved hypothetical protein [Ricinus communis] gi|223548954|gb|EEF50443.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 298/489 (60%), Positives = 372/489 (76%), Gaps = 2/489 (0%)

Query: 7   LDISLSEDVLQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPH 66
           +++ L ED+LQ L   S S  LK+ALEILIE+S+   GR++LA+K++LP VL+L +SI +
Sbjct: 1   MELFLPEDLLQLLFRASKSYDLKEALEILIETSRIDDGRANLAAKDVLPLVLKLFKSISY 60

Query: 67  SSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQ 126
            SG  +L LSLKLLRNLCAGEITNQ  F+   G  +V  +LRS G+  + DYGIIR+ LQ
Sbjct: 61  PSGDQFLTLSLKLLRNLCAGEITNQNCFVALNGPEMVSTLLRSAGLVYEPDYGIIRLGLQ 120

Query: 127 VLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCG 186
           VLANVSLAGE HQ AIW  FFPDEF  LA  R Q TCDPLCM+IYTCCDG+ G   ELCG
Sbjct: 121 VLANVSLAGEKHQQAIWHWFFPDEFVVLAKNRSQSTCDPLCMIIYTCCDGNPGFVLELCG 180

Query: 187 DKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNSR 246
           D+GLA++AEIV TA+ VG+ EDWFK L+SR C+EE +F +LF      G S N E  +S 
Sbjct: 181 DRGLAVVAEIVRTASVVGYGEDWFKLLLSRICLEEEYFYKLFSCFYCAGDSENSEGISSS 240

Query: 247 EGTFSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTS 306
              FS+EQA+LL  VSEI+NER+E+I V  DFA  V GIF +S+G+VDF +RG   LPT 
Sbjct: 241 SDLFSTEQAYLLSTVSEILNERLEDISVSIDFAFYVFGIFKRSVGVVDFVSRGNSGLPTG 300

Query: 307 SSAINVLGYSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAII 366
           S+A++VLGYSL+ILR+ CA     G    +  D+VD+L S+GL+E+ L +L DLEPP +I
Sbjct: 301 SAAVDVLGYSLTILRDTCALHGKGG--LYHSVDVVDTLLSNGLLELLLFVLHDLEPPPMI 358

Query: 367 RKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQ 426
           +KAM+Q EN E  S++S K CPY GFRRD+VAVIGNCA++R ++QDEIR++D I LLLQQ
Sbjct: 359 KKAMKQNENHEPASSRSYKPCPYKGFRRDIVAVIGNCAFQRNNVQDEIRQKDMIPLLLQQ 418

Query: 427 CVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEVDKNTR 486
           CVTDEDNPF REWG+WCVRNLLEGN ENQK VA+LELQG++ VPEL+ LGL+VEVD NTR
Sbjct: 419 CVTDEDNPFLREWGLWCVRNLLEGNVENQKAVAELELQGTVQVPELSGLGLRVEVDSNTR 478

Query: 487 RAKLVNVPS 495
           RA+LVNV S
Sbjct: 479 RARLVNVSS 487

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431487|ref|XP_002274705.1| PREDICTED: uncharacterized protein LOC100264428 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130096|ref|XP_002320751.1| predicted protein [Populus trichocarpa] gi|222861524|gb|EEE99066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530187|ref|XP_003533665.1| PREDICTED: LOW QUALITY PROTEIN: ataxin-10-like [Glycine max] Back     alignment and taxonomy information
>gi|356566800|ref|XP_003551615.1| PREDICTED: ataxin-10-like [Glycine max] Back     alignment and taxonomy information
>gi|357507049|ref|XP_003623813.1| Ataxin-10 [Medicago truncatula] gi|355498828|gb|AES80031.1| Ataxin-10 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297814315|ref|XP_002875041.1| hypothetical protein ARALYDRAFT_490543 [Arabidopsis lyrata subsp. lyrata] gi|297320878|gb|EFH51300.1| hypothetical protein ARALYDRAFT_490543 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18411256|ref|NP_567156.1| maternal effect embryo arrest 50 protein [Arabidopsis thaliana] gi|3193319|gb|AAC19301.1| contains similarity to mouse brain protein E46 (GB:X61506) [Arabidopsis thaliana] gi|26451586|dbj|BAC42890.1| unknown protein [Arabidopsis thaliana] gi|28973257|gb|AAO63953.1| unknown protein [Arabidopsis thaliana] gi|332656441|gb|AEE81841.1| maternal effect embryo arrest 50 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449461251|ref|XP_004148355.1| PREDICTED: uncharacterized protein LOC101208818 [Cucumis sativus] gi|449505220|ref|XP_004162408.1| PREDICTED: uncharacterized LOC101208818 [Cucumis sativus] Back     alignment and taxonomy information
>gi|242042465|ref|XP_002468627.1| hypothetical protein SORBIDRAFT_01g049305 [Sorghum bicolor] gi|241922481|gb|EER95625.1| hypothetical protein SORBIDRAFT_01g049305 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:505006409475 MEE50 "maternal effect embryo 0.943 0.987 0.497 5.2e-120
UNIPROTKB|E1C7R6463 ATXN10 "Uncharacterized protei 0.307 0.330 0.321 2.3e-21
DICTYBASE|DDB_G0268880609 atxn10 "ataxin-10" [Dictyostel 0.211 0.172 0.433 6.8e-19
UNIPROTKB|F1MH20475 ATXN10 "Ataxin-10" [Bos taurus 0.273 0.286 0.353 2e-17
UNIPROTKB|Q2TBW0475 ATXN10 "Ataxin-10" [Bos taurus 0.273 0.286 0.353 2e-17
MGI|MGI:1859293475 Atxn10 "ataxin 10" [Mus muscul 0.309 0.324 0.300 2.4e-17
RGD|621813475 Atxn10 "ataxin 10" [Rattus nor 0.309 0.324 0.300 1.2e-16
UNIPROTKB|Q9UBB4475 ATXN10 "Ataxin-10" [Homo sapie 0.289 0.303 0.337 4.2e-16
UNIPROTKB|Q5RE06476 ATXN10 "Ataxin-10" [Pongo abel 0.289 0.302 0.337 4.2e-16
UNIPROTKB|Q4R4Y2475 ATXN10 "Ataxin-10" [Macaca fas 0.181 0.189 0.411 9.1e-16
TAIR|locus:505006409 MEE50 "maternal effect embryo arrest 50" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 244/490 (49%), Positives = 328/490 (66%)

Query:     7 LDISLSEDVLQPLLTTSNSS-SLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIP 65
             ++ SL E+VLQPLL  S+ S SL+D L+ L+ESSKT  GRSDLASK+ILP +L+L Q +P
Sbjct:     1 MEASLPEEVLQPLLHASDLSYSLEDCLKFLLESSKTDSGRSDLASKSILPSILRLLQLLP 60

Query:    66 HSSGCHYXXXXXXXXXXXCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIAL 125
             + S  HY           CAGE++NQ SF++  G  IV  +L S       D+  +R  L
Sbjct:    61 YPSSRHYLNLSLKVLRNLCAGEVSNQNSFVDHDGSAIVSDLLDSAIA----DFETVRFGL 116

Query:   126 QVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELC 185
             QVLANV L GE  Q  +W +F+P+ F ++A +R +ET DPLCM++YTC DGSS +  ELC
Sbjct:   117 QVLANVVLFGEKRQRDVWLRFYPERFLSIAKIRKRETFDPLCMILYTCVDGSSEIASELC 176

Query:   186 GDKGLAIMAEIVCTAASVGFKED-WFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSN 244
               +GL I+AE + T++SVG  ED W K LVSR CVE+ +F +LF KL         ED+ 
Sbjct:   177 SCQGLTIIAETLRTSSSVGSVEDYWLKLLVSRICVEDGYFLKLFSKLY--------EDAE 228

Query:   245 SREGTFSSEQAFLLXXXXXXXXXXXXXXXXPNDFALSVLGIFTKSIGLVDFYARGTPSLP 304
             +    FSSEQAFL+                P D A S+LG+F +S+ + DF +     LP
Sbjct:   229 NE--IFSSEQAFLVRMVSDIANERIGKVSIPKDTACSILGLFRQSVDVFDFVSGERSELP 286

Query:   305 TSSSAINVLGYSLSILRNICA--REDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEP 362
             T S+ ++V+GYSL I+R+ CA  R +     + +  D V+ L S GLIE+ L LL  L+P
Sbjct:   287 TGSTIVDVMGYSLVIIRDACAGGRLEELKEDNKDSGDTVELLLSSGLIELLLDLLSKLDP 346

Query:   363 PAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILL 422
             P  I+KA+ Q  +   +S+ S K CPY GFRRD+V+VIGNCAYRRK +QDEIRERDG+ L
Sbjct:   347 PTTIKKALNQSPS---SSSSSLKPCPYRGFRRDIVSVIGNCAYRRKEVQDEIRERDGLFL 403

Query:   423 LLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDLGLKVEVD 482
             +LQQCVTD++NPF REWG+WC+RNLLEGN ENQ+VVA+LE++GS++VP+L ++GL+VE+D
Sbjct:   404 MLQQCVTDDENPFLREWGLWCIRNLLEGNPENQEVVAELEIKGSVDVPQLREIGLRVEID 463

Query:   483 KNTRRAKLVN 492
               T R KLVN
Sbjct:   464 PKTARPKLVN 473
GO:0005737 "cytoplasm" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
UNIPROTKB|E1C7R6 ATXN10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268880 atxn10 "ataxin-10" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MH20 ATXN10 "Ataxin-10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBW0 ATXN10 "Ataxin-10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1859293 Atxn10 "ataxin 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621813 Atxn10 "ataxin 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBB4 ATXN10 "Ataxin-10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RE06 ATXN10 "Ataxin-10" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R4Y2 ATXN10 "Ataxin-10" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
pfam09759102 pfam09759, Atx10homo_assoc, Spinocerebellar ataxia 3e-37
>gnl|CDD|220385 pfam09759, Atx10homo_assoc, Spinocerebellar ataxia type 10 protein domain Back     alignment and domain information 
 Score =  131 bits (333), Expect = 3e-37
 Identities = 44/94 (46%), Positives = 66/94 (70%)

Query: 391 GFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEG 450
           GF+R+LV +I N  Y+ K +QD++RE  G+ L+L     D++NPF +EW I+C+RNLLE 
Sbjct: 1   GFKRELVRLIANLTYKNKEVQDKVRELGGLALILSNTRIDDNNPFIKEWAIFCIRNLLEN 60

Query: 451 NAENQKVVADLELQGSINVPELTDLGLKVEVDKN 484
           N ENQ+ +A LE QG ++   L + GL+VE++K 
Sbjct: 61  NPENQEFIAGLEPQGVVDNDLLKEAGLEVEINKE 94

This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C-terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region. Length = 102

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
KOG2676478 consensus Uncharacterized conserved protein [Funct 100.0
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.31
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.12
PF05804708 KAP: Kinesin-associated protein (KAP) 97.97
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.13
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.09
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 96.33
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.24
PF04826 254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.95
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 94.34
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 94.14
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 93.45
KOG4199461 consensus Uncharacterized conserved protein [Funct 91.79
PF05804708 KAP: Kinesin-associated protein (KAP) 90.54
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 88.84
KOG4500 604 consensus Rho/Rac GTPase guanine nucleotide exchan 87.64
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 87.52
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 87.03
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 85.11
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 84.88
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 80.65
PF01365207 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi 80.05
>KOG2676 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-67  Score=526.33  Aligned_cols=421  Identities=19%  Similarity=0.189  Sum_probs=341.2

Q ss_pred             hHHHHHHHHHhcccccCCcccccccchHHHHHhhhcCCC-----------------CCcHHHHHHHHHHHHhhccccchh
Q 010918           28 LKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPH-----------------SSGCHYLLLSLKLLRNLCAGEITN   90 (497)
Q Consensus        28 ~~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~-----------------~~~~~~l~~clR~LRNlCa~~~~N   90 (497)
                      +|-+-++|...||++..|++ |.+++|.++++++++.++                 ++++|+++.|+ +|||+|..|..|
T Consensus        23 ~e~i~r~l~~~Fk~q~~r~~-a~rt~~~R~ld~lkk~~~~vsl~~~ss~P~qvenlA~slQlI~~~~-~LqN~~i~cfl~  100 (478)
T KOG2676|consen   23 MELIRRGLAKGFKSQKARGD-AGRTLYSRFLDYLKKFTESVSLDSFSSLPWQVENLANSLQLIAGNS-PLQNEAIACFLM  100 (478)
T ss_pred             HHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHHHHHhccchhccccccCcHHHHHHHhHhhhhcccc-hhHHHHHHHHHh
Confidence            34444999999999999997 569999999999977544                 57889999999 999999999999


Q ss_pred             hhHHhhcchhHHHHH---HhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCcee
Q 010918           91 QKSFIEQTGVGIVLR---VLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLC  167 (497)
Q Consensus        91 Q~~i~~~~~i~~~~~---ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~  167 (497)
                      |++...++.+..-..   +++-....++...++|||++|||+|++..|+++|...|-+.||.+|..+.+|||++++.|..
T Consensus       101 ~ns~~~ldtp~~~vdlIll~~cl~~eq~~~lT~fr~~lQfL~nIasrne~~~s~~wi~~fs~~F~~d~nhPdK~iva~r~  180 (478)
T KOG2676|consen  101 DNSDFFLDTPMNPVDLILLAQCLALEQALWLTLFRVDLQFLFNIASRNELCHSKSWIRLFSIIFDFDSNHPDKWIVALRE  180 (478)
T ss_pred             cccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhHHhhhHHHhcccCCCccchhhhhh
Confidence            999999999943332   33444556667789999999999999999999999999999999999999999999999999


Q ss_pred             eeehhhccCCchhhHhhhcccchHHHHHHHHHHhhcCCcchhHHHHHHHHhHhcCcHHH-HHHhhhhcCCCcccCCCCCC
Q 010918          168 MVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQ-LFFKLSQVGASRNCEDSNSR  246 (497)
Q Consensus       168 MViytc~~~s~er~~eL~~~~~i~i~~e~v~~a~~~~~d~ewl~lli~~~~le~~~l~~-ly~~ls~~~~~~~~e~~~~~  246 (497)
                      ||+||.+  +.+|+++ .++. ..|   .|+.||+.+|..||....++.+.++++++.. +|.++.              
T Consensus       181 ~I~F~sl--~aeri~~-eeN~-~~I---~v~~ay~~~pkse~~~id~~~l~~kskel~tA~F~k~l--------------  239 (478)
T KOG2676|consen  181 DIMFNSL--IAERILK-EENF-PNI---LVNVAYKIGPKSEYFLIDCMSLKIKSKELATAGFYKIL--------------  239 (478)
T ss_pred             hHHHHHH--HHHHHHh-hhcc-chh---hhhhhhccCCccceeehhhhhhhhccHHHHHhHHHHHh--------------
Confidence            9999999  7899998 5554 333   3678999999999999999999999999974 888863              


Q ss_pred             CCCCChhHhHHHHHHHHHhhccc----ccc-ccCchhH-HHHHHHHHhhhhhhhhhhcCCCCCCCCchhHHHHHhHHHHH
Q 010918          247 EGTFSSEQAFLLEIVSEIVNERI----EEI-IVPNDFA-LSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSIL  320 (497)
Q Consensus       247 ~~~~~~eqvtLL~ll~a~l~e~~----~di-~v~~~~a-~~l~~~F~~~a~~v~~~~~~~~~l~t~~~~~d~L~~sL~lL  320 (497)
                          |+||+|||.++...+.+..    .++ ++...+| .++-..|-..|..+..+...  +.+    ...+...+++++
T Consensus       240 ----nqERvtLl~v~~~~~Ts~E~~~t~eisp~~lrha~~~i~~~f~~~c~~y~~~vs~--~~~----~~~~~l~~~~l~  309 (478)
T KOG2676|consen  240 ----NQERVTLLCVGRQFATSLEECFTKEISPAGLRHANHFIEIVFLGVCLLYRDYVSY--DTT----ISLKNLDSSSLG  309 (478)
T ss_pred             ----hhhhhHHHHHHHHHHhccchhhhhhcCHHHHHHHHhhhHHHHHhHHHhhhhhhcc--CCC----chhhhhhhhhHH
Confidence                8999999999999886443    445 3334444 34444444544443222211  111    112345789999


Q ss_pred             HHHhhccCCCCCCCcchhhhHHHHhh-cccHHHHHHHhhhcCCChhhhhhhhcCCCC---CCCc-ccccccCCCcchhHH
Q 010918          321 RNICAREDPAGSSSVNRADLVDSLQS-HGLIEMFLSLLRDLEPPAIIRKAMRQGENQ---EGTS-AKSAKTCPYIGFRRD  395 (497)
Q Consensus       321 ~~Lc~~~~~~s~~~~~~~d~~~~L~~-~gLle~lI~LLr~l~~~~~i~k~~~~~~~~---~~~~-~~~~~~~~~~g~k~~  395 (497)
                      +++|+++..+        .+..|++. .||++..+.|||..+..      ++++.+.   +|.- ..........|+++|
T Consensus       310 d~lce~~v~~--------~lisyi~~l~~lLd~~i~LLr~~~v~------gkeT~ni~s~egcvr~el~i~nv~n~~esH  375 (478)
T KOG2676|consen  310 DMLCETSVPS--------SLISYIIHLLALLDKRIPLLRKTLVE------GKETYNISSMEGCVRQELYIANVGNKRESH  375 (478)
T ss_pred             HHHHhcCCcH--------HHHHHHHHHHHHHHHhhHHHHHHhhc------ccceeeeccccchHHhhhhhhhhcccchHH
Confidence            9999987322        25678776 89999999999986532      1222221   1200 001123467899999


Q ss_pred             HHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhcccCCCCCchhHhhc
Q 010918          396 LVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDL  475 (497)
Q Consensus       396 lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~~~~~~~~~L~~~  475 (497)
                      ++|+||++||+++++||+|||+||+++||++|+|||+|||||||+|+|+|+|+++|.+||++|++|++||++++++|+++
T Consensus       376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme~q~~~~~daL~ka  455 (478)
T KOG2676|consen  376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKMEPQTTTHSDALEKA  455 (478)
T ss_pred             HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCCccccchHhHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeCCCCceEEeeCCCC
Q 010918          476 GLKVEVDKNTRRAKLVNVPSK  496 (497)
Q Consensus       476 G~~v~id~~~gk~~l~~~~~~  496 (497)
                      |++++|.+ +||++|+++..+
T Consensus       456 GFe~~i~k-ggKv~L~sk~~~  475 (478)
T KOG2676|consen  456 GFESYINK-GGKVVLQSKTAK  475 (478)
T ss_pred             CcEEEecC-CceEEEeecCCC
Confidence            99999998 799999988543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 79/561 (14%), Positives = 156/561 (27%), Gaps = 177/561 (31%)

Query: 10  SLSEDVLQPLLTTSNSSSLKDALEILIES-SKTTVGRSDLASKNILPEVLQLTQSIPHSS 68
            +  +  QP + T      +D L    +  +K  V R        L   L+L Q+     
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--------LQPYLKLRQA----- 143

Query: 69  GCHYLLLSLKLLRNLCA-GEITNQKSFIEQTGVG---IVLRVLRSPGVNLDKDYGI--IR 122
                LL L+  +N+   G            G G   + L V  S  V    D+ I  + 
Sbjct: 144 -----LLELRPAKNVLIDG----------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 123 IALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGS---SG 179
           +         L        +  Q  P+              D    +             
Sbjct: 189 LKNCNSPETVLE---MLQKLLYQIDPNW---------TSRSDHSSNIKLRIHSIQAELRR 236

Query: 180 LFKELCGDKGLAIMAEIVCTAASVGFKEDWFKF----LV-SRTCVEEIHFPQLFFKLSQV 234
           L K    +  L ++   V  A +     + F      L+ +R       F Q+   LS  
Sbjct: 237 LLKSKPYENCLLVLLN-VQNAKAW----NAFNLSCKILLTTR-------FKQVTDFLS-- 282

Query: 235 GASRNCEDSNSREGTFSSEQAFLLEIVSEIVNERIEEI------IVPNDFALSVLGIFTK 288
            A+      +    T + ++     ++ + ++ R +++        P    LS++    +
Sbjct: 283 AATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNP--RRLSIIAESIR 338

Query: 289 S-IGLVDFYAR-GTPSLPTS-SSAINVLG-------Y-SLSILR---NICAREDPA---- 330
             +   D +       L T   S++NVL        +  LS+     +I     P     
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-----PTILLS 393

Query: 331 ----GSSSVNRADLVDSLQSHGLIE------------MFLSLLR---------------- 358
                    +   +V+ L  + L+E            ++L L                  
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 359 ---------DLEPPAIIR----------KAMRQGENQEGTS----------AKSAKTCPY 389
                    DL PP + +          K +   E                 K       
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 390 IGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVR---- 445
                 ++  +    + + +I D   + + ++  +          F  +     +     
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--------FLPKIEENLICSKYT 565

Query: 446 NLLEG--NAENQKVVADLELQ 464
           +LL     AE++ +  +   Q
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.18
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.9
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.88
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.86
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.84
3nmz_A458 APC variant protein; protein-protein complex, arma 98.81
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.81
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.81
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.8
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 98.75
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.7
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.69
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.67
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 98.64
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.6
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.58
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.58
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.57
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.41
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.4
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.38
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.37
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.21
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.21
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.15
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.05
3grl_A 651 General vesicular transport factor P115; vesicle t 98.02
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.01
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.95
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.78
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.76
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.73
3nmz_A458 APC variant protein; protein-protein complex, arma 97.7
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.59
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.47
3tt9_A 233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.11
3grl_A 651 General vesicular transport factor P115; vesicle t 96.7
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.05
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 88.9
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 84.83
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
Probab=99.18  E-value=3.2e-09  Score=110.46  Aligned_cols=348  Identities=14%  Similarity=0.103  Sum_probs=213.9

Q ss_pred             ccCchHHHHHHHHHhcccccCCcccc-cccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHH
Q 010918           24 NSSSLKDALEILIESSKTTVGRSDLA-SKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGI  102 (497)
Q Consensus        24 ~~~~~~~~l~~L~~~~k~~~~R~~~a-~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~  102 (497)
                      +..--+.+.+.|..+++...+|..+. .+..++.+.++|++.   +.......+.+.|||++.. ..|+..|.+.+++..
T Consensus        30 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~  105 (529)
T 1jdh_A           30 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPA  105 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHH
Confidence            33446789999999999888775443 236778888888642   2445667789999998765 559999999999999


Q ss_pred             HHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCceeeeehhhccCCchhhH
Q 010918          103 VLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFK  182 (497)
Q Consensus       103 ~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~MViytc~~~s~er~~  182 (497)
                      +.+++...      +..+.+.++..|+|++..++..+..+...-.-..+..++..++.++....+..+.+...++.+...
T Consensus       106 L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~  179 (529)
T 1jdh_A          106 LVKMLGSP------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             HHHHTTCS------CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCC------CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            98888653      245778999999999999999999998776556677788777666655555566666655555555


Q ss_pred             hhhcccchHHHHHHHHHHhhcCCcchhHHHHHH-------------HHhHhcCcHHHHHHhhhhcCCCcccCCCCCCCCC
Q 010918          183 ELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVS-------------RTCVEEIHFPQLFFKLSQVGASRNCEDSNSREGT  249 (497)
Q Consensus       183 eL~~~~~i~i~~e~v~~a~~~~~d~ewl~lli~-------------~~~le~~~l~~ly~~ls~~~~~~~~e~~~~~~~~  249 (497)
                      .+....+++.++.++.+.     +.+...+-..             ..+++.+-++.+...+..               .
T Consensus       180 ~i~~~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~---------------~  239 (529)
T 1jdh_A          180 IILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD---------------P  239 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS---------------S
T ss_pred             HHHHCCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC---------------C
Confidence            555556677666665432     2221221111             112222222233332210               0


Q ss_pred             CChhHhHHHHHHHHHhhccccccccCchhHHHHHHHHHhhhhhhhhhhcCCCCCCCCchhHHHHHhHHHHHHHHhhccCC
Q 010918          250 FSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDP  329 (497)
Q Consensus       250 ~~~eqvtLL~ll~a~l~e~~~di~v~~~~a~~l~~~F~~~a~~v~~~~~~~~~l~t~~~~~d~L~~sL~lL~~Lc~~~~~  329 (497)
                      ...-+...+..+.......+....+ .+....+...+           +      +.  ..++...+...|..+|...  
T Consensus       240 ~~~~~~~a~~~L~~l~~~~~~~~~~-~~~i~~L~~ll-----------~------~~--~~~v~~~a~~~L~~L~~~~--  297 (529)
T 1jdh_A          240 SQRLVQNCLWTLRNLSDAATKQEGM-EGLLGTLVQLL-----------G------SD--DINVVTCAAGILSNLTCNN--  297 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTTCSCC-HHHHHHHHHHT-----------T------CS--CHHHHHHHHHHHHHHTTTC--
T ss_pred             ChHHHHHHHHHHHHHhcCChhhHHH-HhHHHHHHHHH-----------c------CC--CHHHHHHHHHHHHHHhcCC--
Confidence            0111222222222222111110000 01111111100           0      00  1122234566677766411  


Q ss_pred             CCCCCcchhhhHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHHHHHHHHhhccCChh
Q 010918          330 AGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKH  409 (497)
Q Consensus       330 ~s~~~~~~~d~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~lvrli~nl~~~~~~  409 (497)
                              ++....+...|.+..++.+|+.-.                          .....+...++.++|++..++.
T Consensus       298 --------~~~~~~~~~~~~v~~L~~ll~~~~--------------------------~~~~v~~~a~~~L~nl~~~~~~  343 (529)
T 1jdh_A          298 --------YKNKMMVCQVGGIEALVRTVLRAG--------------------------DREDITEPAICALRHLTSRHQE  343 (529)
T ss_dssp             --------HHHHHHHHHTTHHHHHHHHHHHHT--------------------------TCHHHHHHHHHHHHHHTSSSTT
T ss_pred             --------HHHHHHHHHcCChHHHHHHHHccC--------------------------CHHHHHHHHHHHHHHHHcCCch
Confidence                    134567778899999988886311                          0126778889999999998765


Q ss_pred             ---hHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHH
Q 010918          410 ---IQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVA  459 (497)
Q Consensus       410 ---~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~  459 (497)
                         .|+.+++.||+|.++.... ++++|.+++.+.++++|++.+ +++|+.+.
T Consensus       344 ~~~~~~~i~~~~~i~~L~~lL~-~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~  394 (529)
T 1jdh_A          344 AEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLALC-PANHAPLR  394 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTTS-TTCCHHHHHHHHHHHHHHTTS-GGGHHHHH
T ss_pred             HHHHHHHHHHcCChhHHHHHhc-cccchHHHHHHHHHHHHHhcC-hhhhHHHH
Confidence               5889999999999988755 344569999999999999985 55665554
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 497
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 0.002
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 397 VAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQK 456
              I +  ++ +  + ++ +  GI  L+        N   ++     +RNL+  +  N+ 
Sbjct: 23  AYYIQHTCFQDESAKQQVYQLGGICKLVDLL--RSPNQNVQQAAAGALRNLVFRSTTNKL 80

Query: 457 VVAD 460
               
Sbjct: 81  ETRR 84

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.74
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.72
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.67
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.46
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.38
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.31
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.21
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.04
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.64
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.39
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.6e-07  Score=91.20  Aligned_cols=354  Identities=14%  Similarity=0.119  Sum_probs=211.1

Q ss_pred             hhccccCchHHHHHHHHHhcccccCCcccc-cccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcc
Q 010918           20 LTTSNSSSLKDALEILIESSKTTVGRSDLA-SKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQT   98 (497)
Q Consensus        20 ~~~~~~~~~~~~l~~L~~~~k~~~~R~~~a-~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~   98 (497)
                      +.-.+..--..+...|.++++....|..+. ..++.+.+..+|.+.   ...+..-.+.+.|+++| ....++..|.+.+
T Consensus        26 L~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g  101 (529)
T d1jdha_          26 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLS-HHREGLLAIFKSG  101 (529)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHT-TSHHHHHHHHHTT
T ss_pred             HcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHh-CCchhHHHHHHCC
Confidence            343334447889999999999888877553 345677777777653   33445556678889988 5788899999999


Q ss_pred             hhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhh-hchhHHHHHhcCCCCCccCceeeeehhhccCC
Q 010918           99 GVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQ-FFPDEFATLAGVRCQETCDPLCMVIYTCCDGS  177 (497)
Q Consensus        99 ~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~-~fP~~f~~ll~~~d~k~~~~~~MViytc~~~s  177 (497)
                      ++..+..+|...      +..+.+.+...|+|++..++..|..++.. ..|. +..+++.++.++....+..++++..++
T Consensus       102 ~i~~Li~lL~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~-Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_         102 GIPALVKMLGSP------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK-MVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHHHHTTCS------CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHH-HHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHhCCC------CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchH-HHHHHHccChHHHHHHHHHHHHHhhhh
Confidence            999998888642      34578888999999999999999998765 5565 556778888887777788888887555


Q ss_pred             chhhHhhhcccchHHHHHHHHHHhhcCCcch--h-HHHHHHH---------HhHhcCcHHHHHHhhhhcCCCcccCCCCC
Q 010918          178 SGLFKELCGDKGLAIMAEIVCTAASVGFKED--W-FKFLVSR---------TCVEEIHFPQLFFKLSQVGASRNCEDSNS  245 (497)
Q Consensus       178 ~er~~eL~~~~~i~i~~e~v~~a~~~~~d~e--w-l~lli~~---------~~le~~~l~~ly~~ls~~~~~~~~e~~~~  245 (497)
                      .+.-.......++..++.++..    +....  | .-.++..         .+++.+-++.+...+..            
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~------------  238 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRT----YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------------  238 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS------------
T ss_pred             hHHHHHHHhcccchHHHHHHHh----hhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcc------------
Confidence            5544444444556655554432    12222  1 1112221         12222222223222210            


Q ss_pred             CCCCCChhHhHHHHHHHHHhhccccccccCchhHHHHHHHHHhhhhhhhhhhcCCCCCCCCchhHHHHHhHHHHHHHHhh
Q 010918          246 REGTFSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICA  325 (497)
Q Consensus       246 ~~~~~~~eqvtLL~ll~a~l~e~~~di~v~~~~a~~l~~~F~~~a~~v~~~~~~~~~l~t~~~~~d~L~~sL~lL~~Lc~  325 (497)
                         +....+...+..+... ...........+....+....           +      +..  .++...+..+|..++.
T Consensus       239 ---~~~~~~~~a~~~l~~l-s~~~~~~~~~~~~i~~Lv~ll-----------~------~~~--~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         239 ---PSQRLVQNCLWTLRNL-SDAATKQEGMEGLLGTLVQLL-----------G------SDD--INVVTCAAGILSNLTC  295 (529)
T ss_dssp             ---SCHHHHHHHHHHHHHH-HTTCTTCSCCHHHHHHHHHHT-----------T------CSC--HHHHHHHHHHHHHHTT
T ss_pred             ---cchhhhhhhhhHHHhc-cccccchhhhhhcchhhhhhc-----------c------ccc--HHHHHHHHHHHHhhcc
Confidence               0111122222222211 111110000011111111100           0      011  1222245666766663


Q ss_pred             ccCCCCCCCcchhhhHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHHHHHHHHhhcc
Q 010918          326 REDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAY  405 (497)
Q Consensus       326 ~~~~~s~~~~~~~d~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~lvrli~nl~~  405 (497)
                      .+          ++....+..+|.++.++.++..-.                          +....+...+..++|+++
T Consensus       296 ~~----------~~~~~~i~~~~~i~~Li~~l~~~~--------------------------~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         296 NN----------YKNKMMVCQVGGIEALVRTVLRAG--------------------------DREDITEPAICALRHLTS  339 (529)
T ss_dssp             TC----------HHHHHHHHHTTHHHHHHHHHHHHT--------------------------TCHHHHHHHHHHHHHHTS
T ss_pred             ch----------hHHHHHHHHhhhHHHHHHHHHhhh--------------------------cchhHHHHHHHHhhcccc
Confidence            11          123455667888888887775311                          122556667788899986


Q ss_pred             CCh---hhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhc
Q 010918          406 RRK---HIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADL  461 (497)
Q Consensus       406 ~~~---~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L  461 (497)
                      ...   ..++.++..+|++.+++...-+ .+.-+.+.++.+++|+.. +++|+..+.+.
T Consensus       340 ~~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~  396 (529)
T d1jdha_         340 RHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL-CPANHAPLREQ  396 (529)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHTT-SGGGHHHHHHT
T ss_pred             hhhcchhhhhhHHhcccchhHHHHHhcc-chHHHHHHHHHHHhhcch-hhhhhhhhhhc
Confidence            654   4788899999999999887654 444477789999999976 47888877654
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure