Citrus Sinensis ID: 010921

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MDTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPCLYKERVKL
cccccHHHHHHHHHHHcccccccccEEEEcccccccccccccEEEEEEEEccccccccEEEEcccccccccccccccccccEEEccccccccccccccccccEEEEEccccccHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHEEEEEEEccccccEEEEEEEEccccccccccEEEEEcccccccccEEEEcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccHHHHHHHEEHHHHHcHHHHcccccEcccccccccccccccEEEEEEEEEcccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEEHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHEHHEccc
MDTKRVINIFIFILVsspclasagdivhqdnnapkrpgcdnnfvlvkvptwvdggedteyvgvgarfgrtleakekdasqnrlvladppdccskpknkltgEAILVhrggcsftakanFAEEANASAILIINNKTELFKMVCesnetdvdiripaimlpqdagANLEKLIKNNSVVSvqlysprrpvvdVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKdgsdefsnmegvnsngfvdINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFqhagdsfikvpffgavsyLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARgdrsgedgipmllkiprlfdpwggysvigfgdiilPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPClykervkl
MDTKRVINIFIFILVSSPCLASAGDIVHQDNNapkrpgcdnNFVLVKVPtwvdggedteYVGVGARFGRtleakekdasqnrlvladppdccskpkNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETiipclykervkl
MDTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPCLYKERVKL
****RVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTL*******************CC****NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDG**EFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPCLYK*****
***KRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELD********************FVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVA*********IPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPCLYKERVKL
MDTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPCLYKERVKL
*DTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIEL********************GFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPCLYKER***
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iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLETIIPCLYKERVKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q0WMJ8540 Signal peptide peptidase- yes no 0.937 0.862 0.745 0.0
Q8W469540 Signal peptide peptidase- no no 0.907 0.835 0.733 0.0
Q5Z413542 Signal peptide peptidase- yes no 0.903 0.828 0.698 0.0
Q0DWA9545 Signal peptide peptidase- no no 0.901 0.822 0.711 0.0
Q53P98534 Signal peptide peptidase- no no 0.879 0.818 0.504 1e-129
Q4V3B8540 Signal peptide peptidase- no no 0.909 0.837 0.449 1e-113
Q9MA44536 Signal peptide peptidase- no no 0.895 0.830 0.439 1e-104
Q5N808523 Signal peptide peptidase- no no 0.891 0.847 0.415 2e-96
Q5PQL3 577 Signal peptide peptidase- yes no 0.790 0.681 0.301 5e-42
Q3TD49 578 Signal peptide peptidase- yes no 0.720 0.619 0.316 3e-41
>sp|Q0WMJ8|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1 Back     alignment and function desciption
 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/467 (74%), Positives = 401/467 (85%), Gaps = 1/467 (0%)

Query: 10  FIF-ILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFG 68
           F+F +L+ S     AGDIVH D++ P+RPGC+NNFVLVKVPT V+G E TEYVGVGARFG
Sbjct: 12  FVFGLLLYSASFVCAGDIVHHDDSLPQRPGCNNNFVLVKVPTRVNGSEYTEYVGVGARFG 71

Query: 69  RTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAI 128
            TLE+KEK A+  +L +ADPPDCCS PKNKLTGE ILVHRG CSFT K   AE A ASAI
Sbjct: 72  PTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAI 131

Query: 129 LIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVV 188
           LIINN T+LFKMVCE  E  +DI IP +MLP DAG +LE ++K+N++V++QLYSP+RP V
Sbjct: 132 LIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAV 191

Query: 189 DVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINM 248
           DVAEVFLWLMAVGTILCASYWSAWT RE AIE DKLLKDGSDE   +   +S G V++ +
Sbjct: 192 DVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTV 251

Query: 249 ASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGD 308
            SA+ FVV+ASCFL+MLYKLMSFWFIEVLVVLFCIGGVEGLQTC+V+LLSCFRWF+  G+
Sbjct: 252 ISAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGE 311

Query: 309 SFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVP 368
           S++KVPF GAVSYLTLA+CPFCIAF+V WAV R+ S+AWIGQDILGI+L+ITVLQIVRVP
Sbjct: 312 SYVKVPFLGAVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVP 371

Query: 369 NLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWG 428
           NLKVG VLLSCAF+YDIFWVFVSKWWF ESVMIVVARGDRSGEDGIPMLLKIPR+FDPWG
Sbjct: 372 NLKVGFVLLSCAFMYDIFWVFVSKWWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWG 431

Query: 429 GYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGM 475
           GYS+IGFGDIILPGL+V F+LRYDWL  K  +SGYF+  M+AYGLG+
Sbjct: 432 GYSIIGFGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGL 478
Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q0DWA9|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q53P98|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3B8|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA44|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQL3|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1 Back     alignment and function description
>sp|Q3TD49|SPP2B_MOUSE Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
356568398539 PREDICTED: signal peptide peptidase-like 0.917 0.846 0.822 0.0
356531995539 PREDICTED: signal peptide peptidase-like 0.931 0.858 0.807 0.0
225454252534 PREDICTED: signal peptide peptidase-like 0.955 0.889 0.8 0.0
356520402541 PREDICTED: signal peptide peptidase-like 0.933 0.857 0.793 0.0
255541612538 Minor histocompatibility antigen H13, pu 0.955 0.882 0.791 0.0
356506212542 PREDICTED: signal peptide peptidase-like 0.939 0.861 0.782 0.0
449441460539 PREDICTED: signal peptide peptidase-like 0.911 0.840 0.807 0.0
16118854538 growth-on protein GRO11 [Euphorbia esula 0.955 0.882 0.781 0.0
224064037528 predicted protein [Populus trichocarpa] 0.937 0.882 0.791 0.0
357514571573 Signal peptide peptidase-like 2B [Medica 0.939 0.815 0.738 0.0
>gi|356568398|ref|XP_003552398.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] Back     alignment and taxonomy information
 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/456 (82%), Positives = 415/456 (91%)

Query: 20  LASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDAS 79
           L+ AGDIVH D+ AP+RPGCDNNFVLVKVPTW+DG E  EYVGVGARFG TLE+KEK A+
Sbjct: 21  LSLAGDIVHPDSIAPRRPGCDNNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKHAN 80

Query: 80  QNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFK 139
             R+ +ADPPDCCSKPKNKLTGE ILVHRG CSFT KAN AEEA ASAILIIN +TELFK
Sbjct: 81  HTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINYRTELFK 140

Query: 140 MVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMA 199
           MVCE+NETDVDI IPA+MLPQDAG NL+  I NNSVVSVQLYSP RP+VDVAEVFLWLMA
Sbjct: 141 MVCEANETDVDIGIPAVMLPQDAGENLKNHILNNSVVSVQLYSPLRPLVDVAEVFLWLMA 200

Query: 200 VGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIAS 259
           VGTILCASYWSAWTARE+AIE +KLLKD SDE+ N E   S+ +V+I+ A+A+SFVVIAS
Sbjct: 201 VGTILCASYWSAWTARESAIEQEKLLKDASDEYINAENAGSSAYVEISTAAAISFVVIAS 260

Query: 260 CFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAV 319
           CFLVMLYKLM++WF+EVLVVLFCIGGVEGLQTC+VALLSCF+WFQHA  +F+KVPFFGAV
Sbjct: 261 CFLVMLYKLMAYWFVEVLVVLFCIGGVEGLQTCLVALLSCFKWFQHAAQTFVKVPFFGAV 320

Query: 320 SYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSC 379
           SYLT+AV PFCI F+V+W VYRR+SFAWIGQDILGI L+ITVLQIVR+PNLKVGTVLLSC
Sbjct: 321 SYLTVAVTPFCIVFAVLWGVYRRVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSC 380

Query: 380 AFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDII 439
           AFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPR+FDPWGGYS+IGFGDII
Sbjct: 381 AFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGDII 440

Query: 440 LPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGM 475
           LPGL+VAFSLRYDWL KKN R GYF+WAMTAYGLG+
Sbjct: 441 LPGLLVAFSLRYDWLAKKNLRDGYFLWAMTAYGLGL 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356531995|ref|XP_003534560.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] Back     alignment and taxonomy information
>gi|225454252|ref|XP_002274726.1| PREDICTED: signal peptide peptidase-like 2B [Vitis vinifera] gi|297745304|emb|CBI40384.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520402|ref|XP_003528851.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] Back     alignment and taxonomy information
>gi|255541612|ref|XP_002511870.1| Minor histocompatibility antigen H13, putative [Ricinus communis] gi|223549050|gb|EEF50539.1| Minor histocompatibility antigen H13, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356506212|ref|XP_003521881.1| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] Back     alignment and taxonomy information
>gi|449441460|ref|XP_004138500.1| PREDICTED: signal peptide peptidase-like 4-like [Cucumis sativus] gi|449516199|ref|XP_004165135.1| PREDICTED: signal peptide peptidase-like 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|16118854|gb|AAL14628.1|AF417575_1 growth-on protein GRO11 [Euphorbia esula] Back     alignment and taxonomy information
>gi|224064037|ref|XP_002301360.1| predicted protein [Populus trichocarpa] gi|222843086|gb|EEE80633.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357514571|ref|XP_003627574.1| Signal peptide peptidase-like 2B [Medicago truncatula] gi|355521596|gb|AET02050.1| Signal peptide peptidase-like 2B [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2198155540 SPPL4 "SIGNAL PEPTIDE PEPTIDAS 0.937 0.862 0.745 6.3e-195
TAIR|locus:2026684540 SPPL2 "SIGNAL PEPTIDE PEPTIDAS 0.949 0.874 0.707 5e-186
TAIR|locus:2040971540 SPPL3 "SIGNAL PEPTIDE PEPTIDAS 0.933 0.859 0.446 6.3e-108
TAIR|locus:2198733536 SPPL5 "SIGNAL PEPTIDE PEPTIDAS 0.895 0.830 0.439 1e-100
UNIPROTKB|F1Q1B4 580 SPPL2B "Uncharacterized protei 0.740 0.634 0.321 5.6e-45
UNIPROTKB|J9P0Q5 650 SPPL2B "Uncharacterized protei 0.740 0.566 0.321 5.6e-45
UNIPROTKB|Q8TCT7 592 SPPL2B "Signal peptide peptida 0.732 0.614 0.335 3.1e-44
UNIPROTKB|F1S8G9 585 LOC100515648 "Uncharacterized 0.746 0.634 0.318 3.9e-44
RGD|1308556 577 Sppl2b "signal peptide peptida 0.736 0.634 0.323 2.2e-43
UNIPROTKB|Q5PQL3 577 Sppl2b "Signal peptide peptida 0.736 0.634 0.323 2.2e-43
TAIR|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1888 (669.7 bits), Expect = 6.3e-195, P = 6.3e-195
 Identities = 348/467 (74%), Positives = 401/467 (85%)

Query:    10 FIF-ILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFG 68
             F+F +L+ S     AGDIVH D++ P+RPGC+NNFVLVKVPT V+G E TEYVGVGARFG
Sbjct:    12 FVFGLLLYSASFVCAGDIVHHDDSLPQRPGCNNNFVLVKVPTRVNGSEYTEYVGVGARFG 71

Query:    69 RTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAI 128
              TLE+KEK A+  +L +ADPPDCCS PKNKLTGE ILVHRG CSFT K   AE A ASAI
Sbjct:    72 PTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAI 131

Query:   129 LIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVV 188
             LIINN T+LFKMVCE  E  +DI IP +MLP DAG +LE ++K+N++V++QLYSP+RP V
Sbjct:   132 LIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAV 191

Query:   189 DVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINM 248
             DVAEVFLWLMAVGTILCASYWSAWT RE AIE DKLLKDGSDE   +   +S G V++ +
Sbjct:   192 DVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTV 251

Query:   249 ASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGD 308
              SA+ FVV+ASCFL+MLYKLMSFWFIEVLVVLFCIGGVEGLQTC+V+LLSCFRWF+  G+
Sbjct:   252 ISAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGE 311

Query:   309 SFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVP 368
             S++KVPF GAVSYLTLA+CPFCIAF+V WAV R+ S+AWIGQDILGI+L+ITVLQIVRVP
Sbjct:   312 SYVKVPFLGAVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVP 371

Query:   369 NLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWG 428
             NLKVG VLLSCAF+YDIFWVFVSKWWF ESVMIVVARGDRSGEDGIPMLLKIPR+FDPWG
Sbjct:   372 NLKVGFVLLSCAFMYDIFWVFVSKWWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWG 431

Query:   429 GYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGM 475
             GYS+IGFGDIILPGL+V F+LRYDWL  K  +SGYF+  M+AYGLG+
Sbjct:   432 GYSIIGFGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGL 478
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TCT7 SPPL2B "Signal peptide peptidase-like 2B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1308556 Sppl2b "signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5PQL3 Sppl2b "Signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0DWA9SIPL4_ORYSJ3, ., 4, ., 2, 3, ., -0.71170.90140.8220nono
Q5Z413SIPL5_ORYSJ3, ., 4, ., 2, 3, ., -0.69840.90340.8284yesno
Q8W469SIPL2_ARATH3, ., 4, ., 2, 3, ., -0.73340.90740.8351nono
Q0WMJ8SIPL4_ARATH3, ., 4, ., 2, 3, ., -0.74510.93760.8629yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
pfam04258291 pfam04258, Peptidase_A22B, Signal peptide peptidas 1e-86
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 1e-60
smart00730249 smart00730, PSN, Presenilin, signal peptide peptid 5e-57
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 9e-14
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 4e-13
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 1e-11
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 1e-11
pfam0222596 pfam02225, PA, PA domain 4e-11
cd02122138 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a 5e-09
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 6e-09
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 3e-08
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 3e-06
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 4e-06
cd02124129 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso 6e-05
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 1e-04
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 3e-04
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase Back     alignment and domain information 
 Score =  268 bits (686), Expect = 1e-86
 Identities = 99/255 (38%), Positives = 131/255 (51%), Gaps = 16/255 (6%)

Query: 240 SNGFVDINMASAVSFVVIASCFLVMLYKLMSFWF------IEVLVVLFCIGGVEGLQ--- 290
                 I+   A+ F + ASC L+ LY             + VL   FCI G   L    
Sbjct: 3   KEETGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLI 62

Query: 291 -TCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIG 349
               +  LS    ++            G  +Y  L     CI F+V W V R+    WI 
Sbjct: 63  LPPCIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEH--WIL 120

Query: 350 QDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRS 409
           QDILGIAL I V++I+R+PNLKVGT+LLS  F YDIFWVF+S + F  SVM+ VA G   
Sbjct: 121 QDILGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPFD 180

Query: 410 GEDGIPMLLKIPRLFD---PWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVW 466
             + +PM L  PRL D    WG +S++G GDI++PGL++AF LR+D    K+    YF+ 
Sbjct: 181 AAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKS-SRTYFIS 239

Query: 467 AMTAYGLGMGKAKFV 481
            M AYGLG+      
Sbjct: 240 TMIAYGLGLLITFVA 254

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family Back     alignment and domain information
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
KOG2442541 consensus Uncharacterized conserved protein, conta 100.0
KOG2443362 consensus Uncharacterized conserved protein [Funct 100.0
PF04258298 Peptidase_A22B: Signal peptide peptidase; InterPro 100.0
smart00730249 PSN Presenilin, signal peptide peptidase, family. 100.0
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.97
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.9
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.88
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.86
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.86
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.86
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.84
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.81
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.8
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.78
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.75
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.69
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.68
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.63
KOG3920193 consensus Uncharacterized conserved protein, conta 99.59
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.52
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.52
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.41
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.38
PF06550283 DUF1119: Protein of unknown function (DUF1119); In 99.32
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.29
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.17
COG3389277 Uncharacterized protein conserved in archaea [Func 98.95
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 98.85
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.33
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.32
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.23
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.19
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 97.93
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 94.62
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-117  Score=910.29  Aligned_cols=472  Identities=50%  Similarity=0.869  Sum_probs=446.6

Q ss_pred             ccccCCCCCCcCCCCCCCCCCCCCeEEEEeeeeecCCCcceEEeeecCCCCccccccCCceeeEEEecCCCCCCCCCCCC
Q 010921           19 CLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNK   98 (497)
Q Consensus        19 ~~~~~~d~~~~d~~~~~~p~c~n~f~lvkv~~wv~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~a~p~daC~~~~~~   98 (497)
                      ....++|..|+|+..|+.|||+|+||++|+++|+||+|..++.++.++||...+...+++...++..++|.|.|+++.+.
T Consensus        14 ~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k   93 (541)
T KOG2442|consen   14 SFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK   93 (541)
T ss_pred             heEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc
Confidence            55678999999999999999999999999999999999999999999999999888777777788899999999999999


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcccccccCCCCCCCcccceEEEechhhhHHHHHHHhcCcEEEE
Q 010921           99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSV  178 (497)
Q Consensus        99 l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~G~~V~V  178 (497)
                      ++|+++++.||+|+|++|+++||++||+|++++||.+++..|.|++.++..+++||++|+++++|+.+.+....|++|++
T Consensus        94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~  173 (541)
T KOG2442|consen   94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL  173 (541)
T ss_pred             ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence            99999999999999999999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             EeecCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCccccccCCCCCCceeeCccchhhhhHHH
Q 010921          179 QLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIA  258 (497)
Q Consensus       179 ~l~~p~~p~vD~s~~~L~l~Av~ti~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~a~~fpv~a  258 (497)
                      ++|+|++|.+|++++++|+||++||.+|+|||.+++||+..|+++.++|..+++.+++|++|++..++|+..|+.|++++
T Consensus       174 ~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~~  253 (541)
T KOG2442|consen  174 ALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVTA  253 (541)
T ss_pred             EEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhhh
Confidence            99999999999999999999999999999999999999999999988877777667778888999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCCceeeccccccccchhchhhhhhhhhheee
Q 010921          259 SCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWA  338 (497)
Q Consensus       259 s~~Ll~Ly~~~~~~~~~ll~~~f~i~g~~~l~~~l~~~l~~~~~~~~~~~~~~~~p~~g~~~~~~l~~~~~~~~~~~~w~  338 (497)
                      |.+|++||||++ |++++++++|||+|..+|++|+.++++  |++.+..+.....|..|..++.++++.++|++++++|+
T Consensus       254 c~~LvLlyfF~~-~~V~v~iiif~i~g~~gLy~Cl~~lv~--r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~  330 (541)
T KOG2442|consen  254 CGFLVLLYFFYS-YLVYVLIIIFCIGGAQGLYNCLAALVH--RLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWA  330 (541)
T ss_pred             HHHHHHHHHHHH-HHHHHHhhheeecccchHHHHHHHHHh--hhhhhcccccccccccCChhHHHHHHHHhhhheeEEEE
Confidence            999999999997 599999999999999999999999998  77665555556678888999999999999999999999


Q ss_pred             eeecCCcchhHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHhhhheeeecccccc--cceEEEeeccCCCCCCCCCE
Q 010921          339 VYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFH--ESVMIVVARGDRSGEDGIPM  416 (497)
Q Consensus       339 ~~~~~~~~W~l~nilgi~~~~~~i~~~~l~~~k~~~ilL~~lf~YDif~VF~sp~~~~--~svMv~VA~~~~~~~~~~P~  416 (497)
                      ++||++|+|++||++|||+|++++|.+|+||+|++++||.++|+|||||||+||++|+  ||||++||+|.++++|++||
T Consensus       331 v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~EkiPM  410 (541)
T KOG2442|consen  331 VFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEEKIPM  410 (541)
T ss_pred             EeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCCCcce
Confidence            9999999999999999999999999999999999999999999999999999999998  99999999999999999999


Q ss_pred             EEEccccc-----CCCCCceeecccchhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHH---------H
Q 010921          417 LLKIPRLF-----DPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGMGKAKFV---------K  482 (497)
Q Consensus       417 ~l~~P~~~-----~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~---------a  482 (497)
                      +|++||++     ++|++|||||||||++||++|+||+|||...++. +++||.|+++||++||++|-.+         |
T Consensus       411 lLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~-~~iYfv~~tvaYgiGLlvTfvaL~LM~~GQPA  489 (541)
T KOG2442|consen  411 LLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSV-SNIYFVWSTVAYGIGLLVTFVALVLMKGGQPA  489 (541)
T ss_pred             EEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhcccc-ceeEEehhHHHHHHHHHHHHHHHHHhcCCCce
Confidence            99999999     8899999999999999999999999999998875 6899999999999999998663         9


Q ss_pred             HHHhhccccccc
Q 010921          483 LETIIPCLYKER  494 (497)
Q Consensus       483 L~~i~P~~~~~~  494 (497)
                      |+|+|||-|...
T Consensus       490 LLYLVP~TL~t~  501 (541)
T KOG2442|consen  490 LLYLVPCTLGTA  501 (541)
T ss_pred             EEEEechHHHHH
Confidence            999999988744

>KOG2443 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00730 PSN Presenilin, signal peptide peptidase, family Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>COG3389 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 8e-14
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 1e-07
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 69.1 bits (168), Expect = 8e-14
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 13/151 (8%)

Query: 48  VPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN---------- 97
                        +     +G+    +               + C+   N          
Sbjct: 42  RVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGST 101

Query: 98  KLTGEAILVHRGG-CSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAI 156
                  L+ RGG C+F  K + A E  AS  +I N      +++  S+     + I AI
Sbjct: 102 VQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAI 159

Query: 157 MLPQDAGANLEKLIKNNSVVSVQLYSPRRPV 187
           M+    G  + + I+    V++ +   ++  
Sbjct: 160 MIGNLKGTKILQSIQRGIQVTMVIEVGKKHG 190
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.85
4hyg_A301 Putative uncharacterized protein; protease, membra 99.83
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.04
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 98.95
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.59
3kas_A640 Transferrin receptor protein 1; transferrin recept 98.41
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.31
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 98.05
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 98.0
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 90.81
2kr6_A176 Presenilin-1; protease, alternative splicing, alzh 87.66
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.85  E-value=6.2e-21  Score=181.12  Aligned_cols=120  Identities=23%  Similarity=0.312  Sum_probs=99.7

Q ss_pred             CcceEEeeecCCCCccccccCCceeeEEEecC---CCCCCCCCCC---C-------CCCcEEEEecCC-CCHHHHHHHHH
Q 010921           56 EDTEYVGVGARFGRTLEAKEKDASQNRLVLAD---PPDCCSKPKN---K-------LTGEAILVHRGG-CSFTAKANFAE  121 (497)
Q Consensus        56 e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~a~---p~daC~~~~~---~-------l~g~IaLV~RG~-CsF~~Ka~nAq  121 (497)
                      ....+.+.+|+||..+|.+   +.++.++.+.   |.+||++.+.   .       .+||||||+||+ |+|.+|++|||
T Consensus        50 ~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq  126 (194)
T 3icu_A           50 RTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAY  126 (194)
T ss_dssp             CEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHH
T ss_pred             ceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHH
Confidence            3445889999999998875   4788888764   7899998762   1       368999999999 99999999999


Q ss_pred             hcCCcEEEEEecCC---cccccccCCCCCCCcccceEEEechhhhHHHHHHHhcCcEEEEEeecC
Q 010921          122 EANASAILIINNKT---ELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSP  183 (497)
Q Consensus       122 ~aGA~avIV~n~~~---~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~G~~V~V~l~~p  183 (497)
                      ++||+|+||||+++   ....|...     ...+||+++|++++|+.|++++++|.+|++++...
T Consensus       127 ~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg  186 (194)
T 3icu_A          127 ERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG  186 (194)
T ss_dssp             HTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             HCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECC
Confidence            99999999999852   34667532     23579999999999999999999999999888643
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.61
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.36
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.6e-08  Score=91.96  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=67.2

Q ss_pred             ceeeEEEecCCCCC--CCCCCCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcc------------cccccC
Q 010921           78 ASQNRLVLADPPDC--CSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL------------FKMVCE  143 (497)
Q Consensus        78 ~~~~~Lv~a~p~da--C~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l------------~~m~~~  143 (497)
                      .++++++.++-...  =+.+..+++|||+|++||+|.|.+|++|||++||+|+|+|+|..+.            ..+..+
T Consensus        38 ~v~g~lVy~n~G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~G  117 (193)
T d1de4c2          38 TVTGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTG  117 (193)
T ss_dssp             EEEECEEECSTTCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSS
T ss_pred             ceeEEEEEccCCCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCC
Confidence            46788998753100  0122357899999999999999999999999999999999974321            011111


Q ss_pred             C----------------CCCCCcccceEEEechhhhHHHHHHHh
Q 010921          144 S----------------NETDVDIRIPAIMLPQDAGANLEKLIK  171 (497)
Q Consensus       144 ~----------------~~~~~~i~IPvv~Is~~~G~~L~~~L~  171 (497)
                      +                .+...-.+||+.-|+.+|++.|++.|.
T Consensus       118 DPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         118 DPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             CTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            0                011123579999999999999999884
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure