Citrus Sinensis ID: 010928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MGEVAVESFIDQLPLHQTATKDPNDDQQLQVITVESRSMSTGFNGLSNDRVVGELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFFRPK
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccEEEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccEEEHHHHcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEEcHHEEEEEHHHEEEEEEcHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MGEVAVESFidqlplhqtatkdpnddqqlQVITVESrsmstgfnglsndrvvgelnpvdawlpitesrngnIFYAVFHLISsgigsqalLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAesvpgtrysrYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIAcgggstceaksltGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSInkgrsngvsyspsqesksdmvEFGNIFNAIGKIALAFRGHNLVLEIqgtlpssrrnpscqtmwkGTIISYLLIAMCLFpltitgfwaygnkvpvngGLLSALSQvhghntskhVMGTIYLLVLINSLSsfqiyampvfdnleFQYVskkkqrcpgwvrAGIRLFFGGLTFFIAVAfpflgslapliggialpltyvyPCFMYIlikkpsrsgAMWWLNVGLGCLGTILSVMLVVAAAWNLadkglhanffrpk
MGEVAVEsfidqlplhqtatkdpnddqQLQVITVESRSMSTGFNGLSNDRVVGELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIqgtlpssrrnpscQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADkglhanffrpk
MGEVAVESFIDQLPLHQTATKDPNDDQQLQVITVESRSMSTGFNGLSNDRVVGELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFFRPK
******************************************FNGLSNDRVVGELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINK******************VEFGNIFNAIGKIALAFRGHNLVLEIQGTLP****NPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFF***
****************************************************************TESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFFR**
MGEVAVESFIDQLPLHQTATKDPNDDQQLQVITVESRSMSTGFNGLSNDRVVGELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGR*************SDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFFRPK
*GEVAVESFIDQLPLHQTATK************************************VDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFF***
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MGEVAVESFIDQLPLHQTATKDPNDDQQLQVITVESRSMSTGFNGLSNDRVVGELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFFRPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q84WE9478 Lysine histidine transpor yes no 0.905 0.941 0.513 1e-127
Q9SX98519 Lysine histidine transpor no no 0.881 0.843 0.514 1e-127
Q9FKS8446 Lysine histidine transpor no no 0.822 0.917 0.334 2e-70
O22719451 Lysine histidine transpor no no 0.830 0.915 0.344 5e-68
Q9SS86455 Lysine histidine transpor no no 0.814 0.890 0.340 1e-66
Q9LRB5441 Lysine histidine transpor no no 0.804 0.907 0.352 1e-65
Q9C733453 Lysine histidine transpor no no 0.867 0.951 0.342 6e-65
Q9SR44441 Lysine histidine transpor no no 0.800 0.902 0.345 2e-61
Q9C6M2440 Lysine histidine transpor no no 0.794 0.897 0.352 2e-57
Q9C9J0448 Lysine histidine transpor no no 0.806 0.895 0.307 2e-45
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function desciption
 Score =  456 bits (1173), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/465 (51%), Positives = 312/465 (67%), Gaps = 15/465 (3%)

Query: 33  TVESRSMSTGFNGLSNDRVVGELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLP 92
           + + + +S   NG    R+     PV+ WLPITESR GN++ A FHL+ SGIG Q +LLP
Sbjct: 28  STDPQPISGEKNGGDGGRI-----PVEEWLPITESRKGNVYTATFHLLCSGIGLQVILLP 82

Query: 93  VAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLL 152
            AFAALGW WG I L++ F W+LYT WLLV L E+VPG R SRY+ LA+ +FG KLGKLL
Sbjct: 83  AAFAALGWVWGTIILTVGFVWKLYTTWLLVQLHEAVPGIRISRYVRLAIASFGVKLGKLL 142

Query: 153 AIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIA 212
            IFPVMYLSGG C +L+IT G +++ L +I     S      LT V+ FLVF+C+A+ ++
Sbjct: 143 GIFPVMYLSGGACTILVITGGKSIQQLLQIM----SDDNTAPLTSVQCFLVFSCIAMIMS 198

Query: 213 QILPNLNSVAKVSMVGAITAVAYCTFIWALSI-NKGRSNGVSYSPSQESKSDMVEFGNIF 271
           Q  PNLNS+  VS++GA   +AYCT IW L + +  +   VS S +   KS    F +IF
Sbjct: 199 Q-FPNLNSLFGVSLIGAFMGIAYCTVIWILPVASDSQRTQVSVSYATMDKS----FVHIF 253

Query: 272 NAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWA 331
           NAIG IAL +RG+NLVLEIQGTLPS  +NPSC+TMW+  +IS+ L+A+C+FPLT   +WA
Sbjct: 254 NAIGLIALVYRGNNLVLEIQGTLPSDSKNPSCKTMWRAVMISHALVAICMFPLTFAVYWA 313

Query: 332 YGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVS 391
           YG+K+P  GG +    +++    SK     I+L  + + L S+ I  MP  DN+E  Y++
Sbjct: 314 YGDKIPATGGPVGNYLKLYTQEHSKRAACFIHLTFIFSCLCSYPINLMPACDNIEMVYIT 373

Query: 392 KKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKK 451
           KKK+     VR  +R+F   + F IAV FPFL  LA LIG IAL +T+ YPCFM+I IKK
Sbjct: 374 KKKKPASIIVRMMLRVFLSLVCFTIAVGFPFLPYLAVLIGAIALLVTFTYPCFMWISIKK 433

Query: 452 PSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGLHANFFRP 496
           P R   MW  NV +GCLG  LSV+L+VA+A  LA KGLHANFFRP
Sbjct: 434 PQRKSPMWLFNVLVGCLGASLSVLLLVASAMRLAQKGLHANFFRP 478
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
224080717442 lysine/histidine transporter [Populus tr 0.881 0.990 0.709 1e-180
297744505530 unnamed protein product [Vitis vinifera] 0.963 0.903 0.624 1e-172
359474803493 PREDICTED: lysine histidine transporter- 0.963 0.971 0.624 1e-171
147834017493 hypothetical protein VITISV_027980 [Viti 0.963 0.971 0.620 1e-169
255575025493 amino acid transporter, putative [Ricinu 0.977 0.985 0.584 1e-158
255539144524 amino acid transporter, putative [Ricinu 0.965 0.916 0.573 1e-158
224061917520 lysine/histidine transporter [Populus tr 0.883 0.844 0.603 1e-156
302141680 1030 unnamed protein product [Vitis vinifera] 0.883 0.426 0.585 1e-155
225459826515 PREDICTED: lysine histidine transporter- 0.883 0.852 0.585 1e-155
452593518 ORF [Lilium longiflorum] 0.887 0.851 0.578 1e-151
>gi|224080717|ref|XP_002306215.1| lysine/histidine transporter [Populus trichocarpa] gi|222849179|gb|EEE86726.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/444 (70%), Positives = 365/444 (82%), Gaps = 6/444 (1%)

Query: 57  PVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLY 116
           P +AWLPITESRNGN   +VFHL+SSGIG QALLLPVAF+ LGW WG+ICLS++F WQLY
Sbjct: 1   PQEAWLPITESRNGNTVTSVFHLLSSGIGIQALLLPVAFSILGWAWGIICLSLAFTWQLY 60

Query: 117 TIWLLVILAESVPG--TRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGG 174
           TIW+LV L ESVPG  TRYSRYL LA+ AFGPKLGKLLAIFPVMYLSG TC+MLII   G
Sbjct: 61  TIWVLVQLHESVPGIGTRYSRYLQLAIAAFGPKLGKLLAIFPVMYLSGSTCIMLIIKGAG 120

Query: 175 NMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVA 234
            ME L+K+ C GG+TC+AKSLTG EWFLVFTCMAIA+AQ  PNLNS+A  S+VGA++A+ 
Sbjct: 121 VMELLFKLMCEGGATCDAKSLTGAEWFLVFTCMAIALAQ-RPNLNSIAGFSLVGAMSAIG 179

Query: 235 YCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTL 294
           YCT IWAL I+K R +GVSY  S++  S M    ++ NAIG I LAFRGHNLVLEIQGTL
Sbjct: 180 YCTLIWALPISKDRPSGVSYD-SRKGGSTMAGMFDVLNAIGIIVLAFRGHNLVLEIQGTL 238

Query: 295 PSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNT 354
           PSS  NPS +TMW+G  +SY++IAMC FPL I GFWAYGNK+P NGG+L+A  Q HGH+T
Sbjct: 239 PSSLTNPSKRTMWRGVSVSYIIIAMCQFPLAIAGFWAYGNKIPSNGGMLTAFMQFHGHDT 298

Query: 355 SKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTF 414
           S+   G +YLLV+IN LSSFQIYAMPVFDNLEF+Y+S K +RCP WVR G RLFFGGL F
Sbjct: 299 SRFAKGLVYLLVVINCLSSFQIYAMPVFDNLEFRYISMKNRRCPWWVRIGFRLFFGGLAF 358

Query: 415 FIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSG--AMWWLNVGLGCLGTIL 472
           FIAVA PFL SLAPL+GGI LPLT  YPCFM+ILIKKP + G  A+W LN+GLGCLG +L
Sbjct: 359 FIAVALPFLPSLAPLVGGITLPLTLAYPCFMWILIKKPHQKGHDALWCLNLGLGCLGIVL 418

Query: 473 SVMLVVAAAWNLADKGLHANFFRP 496
           SV+LVVAAAWNLA KGLHA+FF+P
Sbjct: 419 SVLLVVAAAWNLAIKGLHASFFKP 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744505|emb|CBI37767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474803|ref|XP_003631535.1| PREDICTED: lysine histidine transporter-like 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147834017|emb|CAN73165.1| hypothetical protein VITISV_027980 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255575025|ref|XP_002528418.1| amino acid transporter, putative [Ricinus communis] gi|223532154|gb|EEF33960.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255539144|ref|XP_002510637.1| amino acid transporter, putative [Ricinus communis] gi|223551338|gb|EEF52824.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061917|ref|XP_002300663.1| lysine/histidine transporter [Populus trichocarpa] gi|222842389|gb|EEE79936.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302141680|emb|CBI18883.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459826|ref|XP_002284824.1| PREDICTED: lysine histidine transporter-like 8 [Vitis vinifera] Back     alignment and taxonomy information
>gi|452593|dbj|BAA04838.1| ORF [Lilium longiflorum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.879 0.842 0.520 9.6e-128
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.867 0.901 0.532 2e-120
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.806 0.909 0.375 8.4e-74
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.808 0.901 0.350 1.6e-70
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.802 0.904 0.358 7e-70
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.826 0.911 0.358 1.1e-69
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.847 0.954 0.344 1.8e-69
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.867 0.951 0.342 4.9e-69
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.839 0.947 0.340 1.6e-61
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.770 0.854 0.317 2.1e-54
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 231/444 (52%), Positives = 318/444 (71%)

Query:    54 ELNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAW 113
             +LNP DAWLPITESRNGN  YA FH +++G+G QAL+LPVAFA LGW+WG++ L+I++ W
Sbjct:    80 KLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWGILSLTIAYCW 139

Query:   114 QLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAG 173
             QLYT+W+LV L E+VPG RY+RY+ LA  AFG +LG  LA+FP +YLS GT   LI+  G
Sbjct:   140 QLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILIGG 199

Query:   174 GNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAV 233
               M+  ++I CG    C +  LT VEW+LVFT + I ++Q LPNLNS+A +S++GA+TA+
Sbjct:   200 ETMKLFFQIVCG--PLCTSNPLTTVEWYLVFTSLCIVLSQ-LPNLNSIAGLSLIGAVTAI 256

Query:   234 AYCTFIWALSINKGRSNGVSYSP-SQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQG 292
              Y T +W LS+++ R   +SY P S  S S  + F  + NA+G IA AFRGHNLVLEIQ 
Sbjct:   257 TYSTMVWVLSVSQPRPATISYEPLSMPSTSGSL-FA-VLNALGIIAFAFRGHNLVLEIQS 314

Query:   293 TLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGH 352
             T+PS+ ++P+   MW+G  ISY LIA+C+FP++I GFWAYGN +P +GG+L+AL   H H
Sbjct:   315 TMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLMP-SGGMLAALYAFHIH 373

Query:   353 NTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGL 412
             +  + ++ T +LLV+ + LSSFQIY+MP FD+ E  Y S+  + C  WVR+G R+FFG +
Sbjct:   374 DIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFRVFFGFV 433

Query:   413 TFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTIL 472
             +FFI VA PFL SLA L+GG+ LP+T+ YPCFM++LIKKP++    W+ + GLG LG   
Sbjct:   434 SFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFHWGLGWLGVAF 493

Query:   473 SVMLVVAAAWNLADKGLHANFFRP 496
             S+   +   W++   GL   FF+P
Sbjct:   494 SLAFSIGGIWSMVTNGLKLKFFKP 517
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84WE9LHTL7_ARATHNo assigned EC number0.51390.90540.9414yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 4e-48
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 7e-09
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 5e-08
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  170 bits (433), Expect = 4e-48
 Identities = 108/426 (25%), Positives = 191/426 (44%), Gaps = 31/426 (7%)

Query: 68  RNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAES 127
              + + AVF+LI + IG+  L LP AF  LGW  G+I L I     LYT+ LLV  ++ 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 128 VP---GTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIAC 184
           V    G R   Y  L    FGPK   L+    ++ L  G C+  +I AG N+  ++    
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLF-GVCISYLIFAGDNLPAIFD--- 116

Query: 185 GGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSI 244
              S  +   ++ V + ++F  +       +PNL++++ +S+V A+ +  Y   +     
Sbjct: 117 ---SFFDTCHISLVYFIIIFG-LIFIPLSFIPNLSALSILSLVAAV-SSLYIVILVLSVA 171

Query: 245 NKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQ 304
             G                 ++   +F AIG I  AF GH ++L IQ T+ S  +     
Sbjct: 172 ELGVLTAQGV--GSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFK--- 226

Query: 305 TMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYL 364
            M K  + + +++ +    + + G+ A+GN V  N  +L  L +      S  ++    L
Sbjct: 227 AMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGN--ILLNLPK------SDWLIDIANL 278

Query: 365 LVLINSLSSFQIYAMPVFDNLE----FQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAF 420
           L++++ L S+ + A P+   +E     +  S K       +R  IR     +T+ IA++ 
Sbjct: 279 LLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISV 338

Query: 421 PFLGSLAPLIGGIA-LPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTI-LSVMLVV 478
           PFLG    L+G  +  PLT++ P   ++ +KK  +          +  +  I + ++L+ 
Sbjct: 339 PFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMA 398

Query: 479 AAAWNL 484
                L
Sbjct: 399 YGVAGL 404

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.95
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.89
TIGR00814397 stp serine transporter. The HAAAP family includes 99.84
PRK10655438 potE putrescine transporter; Provisional 99.46
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.41
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.39
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.39
PRK11021410 putative transporter; Provisional 99.39
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.38
TIGR00909429 2A0306 amino acid transporter. 99.36
PRK10644445 arginine:agmatin antiporter; Provisional 99.36
TIGR00930 953 2a30 K-Cl cotransporter. 99.35
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.34
PRK15049499 L-asparagine permease; Provisional 99.29
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.27
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.27
PRK10249458 phenylalanine transporter; Provisional 99.26
PRK10746461 putative transport protein YifK; Provisional 99.25
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.24
PRK11387471 S-methylmethionine transporter; Provisional 99.22
TIGR00911501 2A0308 L-type amino acid transporter. 99.22
PRK10238456 aromatic amino acid transporter; Provisional 99.19
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.18
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.18
PRK10580457 proY putative proline-specific permease; Provision 99.15
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.14
PRK10836489 lysine transporter; Provisional 99.09
TIGR00913478 2A0310 amino acid permease (yeast). 99.06
PF03845320 Spore_permease: Spore germination protein; InterPr 99.05
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.04
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.95
COG0531466 PotE Amino acid transporters [Amino acid transport 98.8
PRK15238496 inner membrane transporter YjeM; Provisional 98.77
KOG3832319 consensus Predicted amino acid transporter [Genera 98.69
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.65
COG0833541 LysP Amino acid transporters [Amino acid transport 98.55
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.54
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.54
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.5
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.43
COG3949349 Uncharacterized membrane protein [Function unknown 98.41
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.26
PRK11375484 allantoin permease; Provisional 98.16
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.11
KOG1289550 consensus Amino acid transporters [Amino acid tran 97.93
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.93
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.86
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.64
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.58
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.51
TIGR00813407 sss transporter, SSS family. have different number 97.45
COG1457442 CodB Purine-cytosine permease and related proteins 97.38
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.2
PRK11017404 codB cytosine permease; Provisional 97.0
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.7
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.56
PRK12488549 acetate permease; Provisional 96.44
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 96.34
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.2
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.15
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 95.93
COG1966575 CstA Carbon starvation protein, predicted membrane 95.78
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 95.74
PRK15015 701 carbon starvation protein A; Provisional 95.65
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.63
COG0733439 Na+-dependent transporters of the SNF family [Gene 95.61
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 95.25
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.14
PRK10484523 putative transporter; Provisional 94.7
PRK09395551 actP acetate permease; Provisional 93.84
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 93.72
PRK15419502 proline:sodium symporter PutP; Provisional 93.43
PRK00701439 manganese transport protein MntH; Reviewed 93.26
KOG2466572 consensus Uridine permease/thiamine transporter/al 93.02
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 92.84
PRK15433439 branched-chain amino acid transport system 2 carri 92.13
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 91.45
KOG1288 945 consensus Amino acid transporters [Amino acid tran 89.86
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 86.0
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 83.71
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.2e-57  Score=467.62  Aligned_cols=401  Identities=16%  Similarity=0.216  Sum_probs=318.3

Q ss_pred             cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928           67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP  146 (497)
Q Consensus        67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~  146 (497)
                      -++++..++++|++|+++|+|+|++|+||+++||++|++++++++.++.||+++|.+++++ ++  ..+|+|++++++||
T Consensus        57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~  133 (467)
T PTZ00206         57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP  133 (467)
T ss_pred             cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH
Confidence            3468899999999999999999999999999999999999999999999999999999885 34  55999999999999


Q ss_pred             ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928          147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM  226 (497)
Q Consensus       147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~  226 (497)
                      + ++++..+.+...++|+|++|+++++|.++.+++.....+ .......++..+.+++.++++|+++ +|++++|+++|.
T Consensus       134 ~-g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~-~~~~~~~~r~~~~~i~~~i~lPLs~-~r~i~~L~~~S~  210 (467)
T PTZ00206        134 W-GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPD-FLKQKSGNRLLTSLMWLCFMLPLVI-PRHIDSLRYVST  210 (467)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-hhhhccCcEEeeeehhhhHhhhccc-ccchHHHHHHHH
Confidence            6 666666677888899999999999999998875321111 0000011122233334455667777 999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhccCCCCCcc---cCCCCCCch-hhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCc
Q 010928          227 VGAITAVAYCTFIWALSINKGRSNGVS---YSPSQESKS-DMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPS  302 (497)
Q Consensus       227 ~~~~~~~~~~~~v~~~~i~~g~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~  302 (497)
                      +++.++++..+.+++.+..++.+++.+   ..+.+.... ......+++.++|+++|||.||.+++++++||    |+|+
T Consensus       211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t  286 (467)
T PTZ00206        211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRS  286 (467)
T ss_pred             HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccc
Confidence            999888877766666655554333221   111100000 11122468899999999999999999999999    7888


Q ss_pred             cccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchH
Q 010928          303 CQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVF  382 (497)
Q Consensus       303 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~  382 (497)
                      .+++.+++..++.+++++|..+|++||++||++++  +|++.|+   +  +..+....+++++++++++++||++.+|+|
T Consensus       287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~--~~Illn~---~--p~~~~~~~v~~~~~~~~v~~sypL~~~p~r  359 (467)
T PTZ00206        287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVT--GSVLLMY---D--PVNEPAIMVGFVGVLVKLFVSYALLGMACR  359 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc--hHHHHhC---C--CCCCchhhHHHHHHHHHHHHhhhhhhhhHH
Confidence            88888999999999999999999999999999999  7999665   2  223456778899999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHh---CCCCcchh
Q 010928          383 DNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIK---KPSRSGAM  458 (497)
Q Consensus       383 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~---~~~~~~~~  458 (497)
                      +.+++.+..+ +++.+.|++...+..++++++++|+++||++.+++++||+++ .++|++|+++|++..   +++.+..+
T Consensus       360 ~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~  438 (467)
T PTZ00206        360 NALYDVIGWD-ARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFY  438 (467)
T ss_pred             HHHHHHhCCC-cccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHH
Confidence            9999876422 233355677666777777889999999999999999999999 999999999999842   12223345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010928          459 WWLNVGLGCLGTILSVMLVVAAAWNLA  485 (497)
Q Consensus       459 ~~~~~~~i~~g~~~~v~g~~~si~~i~  485 (497)
                      |+.+++++++|++.++.||++|+++.+
T Consensus       439 ~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        439 YISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHhheEEecchhHhhHHh
Confidence            678999999999999999999999876

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.61
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.38
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.03
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.37
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.52
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.22
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 93.91
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.61  E-value=7.5e-14  Score=143.54  Aligned_cols=361  Identities=15%  Similarity=0.138  Sum_probs=197.0

Q ss_pred             ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928           66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG  145 (497)
Q Consensus        66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G  145 (497)
                      ++|+.+.++.++..+++++|+|++.+|...++.|.. +++..++.++++......+.+...+.|+  .-.+.+..++.+|
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFG   82 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSC
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcC
Confidence            456789999999999999999999999999999964 7788888888888888888888776665  3366677899999


Q ss_pred             cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH
Q 010928          146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS  225 (497)
Q Consensus       146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s  225 (497)
                      |.+|....+...+.. .....++....++.+...++.       +. ..  ...+.+...++.+....-.+..|...+++
T Consensus        83 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~-~~--~~~~~~~~~~~~~~~~in~~g~~~~~~~~  151 (445)
T 3l1l_A           83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPI-------LK-DP--WVLTITCVVVLWIFVLLNIVGPKMITRVQ  151 (445)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCGG-------GG-SH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCcc-------cc-cc--HHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            987877766543333 333444444444443321110       00 00  01111111111111111134566666665


Q ss_pred             HHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCcccc
Q 010928          226 MVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQT  305 (497)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~  305 (497)
                      .+.....+...+++++..+.....++.. ++... . ....+.++..++...+|+|.+...+....+|+    |||+ ++
T Consensus       152 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~-r~  223 (445)
T 3l1l_A          152 AVATVLALIPIVGIAVFGWFWFRGETYM-AAWNV-S-GLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPK-RN  223 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTCCCCCCC-CC-------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChhhcc-cccCc-c-CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCcc-cc
Confidence            5444443333332222222111111111 10100 1 12235678899999999999999999999999    7774 45


Q ss_pred             chhHHHHHHHHHHHHHhhhhheeecccCCccC--CCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHH
Q 010928          306 MWKGTIISYLLIAMCLFPLTITGFWAYGNKVP--VNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFD  383 (497)
Q Consensus       306 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~--~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~  383 (497)
                      ..|++..+..++.++|+...+......+.+..  ++..+..-+++..    ..+...+..+...++.+.+.--..+...+
T Consensus       224 ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR  299 (445)
T 3l1l_A          224 VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQ  299 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH----CTTHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999887766555554321  1112222222211    12344455666666666665555555555


Q ss_pred             HHHHHHhhcc-CC---CCC--cchhhHHHHHHHHHHHHHHh--hccc----hhHHHHhhhhhhhhhHhhhhhHHHHHHhC
Q 010928          384 NLEFQYVSKK-KQ---RCP--GWVRAGIRLFFGGLTFFIAV--AFPF----LGSLAPLIGGIALPLTYVYPCFMYILIKK  451 (497)
Q Consensus       384 ~l~~~~~~~~-~~---~~~--~~~~~~~~~~~~~~~~~iA~--~ip~----~~~il~l~Ga~~~~l~filP~l~~l~~~~  451 (497)
                      .+...-.++. ++   +.+  ...+... .+..+++.++..  ..|+    ++.+.++.+ ++..+.|.++++.+++.++
T Consensus       300 ~~~~~a~dg~lP~~~~~~~~~~~P~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~y~~~~~~~~~~r~  377 (445)
T 3l1l_A          300 TAKAAADDGLFPPIFARVNKAGTPVAGL-IIVGILMTIFQLSSISPNATKEFGLVSSVSV-IFTLVPYLYTCAALLLLGH  377 (445)
T ss_dssp             HHHHHHHTTSSCGGGGCCCTTCCCHHHH-HHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCCcHHHHhcCCCCCCHHHH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence            5444221110 00   001  1111111 111111222222  2332    444444433 2227889999999999876


Q ss_pred             CCC
Q 010928          452 PSR  454 (497)
Q Consensus       452 ~~~  454 (497)
                      +++
T Consensus       378 ~~~  380 (445)
T 3l1l_A          378 GHF  380 (445)
T ss_dssp             SSS
T ss_pred             cCc
Confidence            553
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 91.68
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.68  E-value=6  Score=37.90  Aligned_cols=110  Identities=11%  Similarity=0.145  Sum_probs=66.7

Q ss_pred             CchHHHHHHHHHhhhhhhhch-HHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928           70 GNIFYAVFHLISSGIGSQALL-LPVAFAALGW----TWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF  144 (497)
Q Consensus        70 ~s~~~a~~~l~~~~iG~GiL~-lP~af~~~G~----~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~  144 (497)
                      +|..+-++..++..+|.|=+= .||-..+-|-    ++=+++++++++=..+-=..+.|..++   .....+..++....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~---g~i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA---QGHGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TTCCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CcccHHHHHHHHhc
Confidence            355678888999999987554 8998766552    333334444443333333344444443   22457888888776


Q ss_pred             CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHH
Q 010928          145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIA  183 (497)
Q Consensus       145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~  183 (497)
                      +.+..+.+....+. .++..++.|.++++-.+..++...
T Consensus        82 ~~~~~~giG~~~~~-~~~~i~~yy~vi~~w~l~Y~~~s~  119 (509)
T d2a65a1          82 RNRFAKILGVFGLW-IPLVVAIYYVYIESWTLGFAIKFL  119 (509)
T ss_dssp             CSHHHHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55444555454433 346678888888888877666554