Citrus Sinensis ID: 010933

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
Protein Sequence
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEccccccccccccccEEEEEEcccccEEEEEcccccEEEEEEcccccccccccccEEEEEccccccccEEEEEccccccccccccccccccEEEEEEEEEcccccEEEEEEcccEEEEEEEEEcEEEEEEcccccccccccccEEEccccccccccccccccccccEEcccccEEEEEccEEEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEEccccccccccccEEEEEEEcccccEEEEEccccEEEEEcccccccccccccEEEccccccccccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEEccccccccccccccccccccEEEEEcccccEEEEEEcccEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccEEEEEEEccccccccccHccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEccccEEEEEEcccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEcccccEEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcHcccEEcccccEEEEccEEEEEEEEEccccccEEEEcHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEcccccEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHEHHHcccccccEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
MILNREEASASLEWKCSqafgernpdeelqdvdivsaiefdktgdylavgdrggRVILFETvggknhisRSELEKqmdftstshpeyryktefqshepefdylKSLEIEEKINRVrwcaapngsmfilstndktiKLWKVRDQKVKKikemdhfpfvssentllaeknfmnehnppsfahgyhleWTENMATKIANVgnsvharcqkvyphahdfninsisnnsdcetfvsaDDLRINLWnleisdqcfnivdmkpsnmddltevitsaefhpIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAaeshgsksfFTEIIASISdikfandgqhllsrDYMNLKLWDirmdstpvatfkihehlrpklcdlynndsifdkfecsvsgdglhfatgsySNLLRIFShgvgsaggitveagknenrkpilqaaprarrssLSNLTRGLYRQahensssghhelsYNLSSKLLhlawhpttnliacangnslffhya
Flexible Loop (DISEMBL)
milnreeasasleWKCSQAFgernpdeelqDVDIVSAIEFDKTGDYLAVGDRGGRVILFEtvggknhisrselekqmdftstSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCaapngsmfilstndktiklWKVRDQKVKkikemdhfpfvsSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGItveagknenrkpilqaaprarrsslsNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Low Complexity Region (SEG)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFninsisnnsDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered region (IsUnstruct)
*****************************QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN********************************EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV*********************************************SYNLSSKLLHLAWHPTTNLIACANGNSLFFHY*
Disordered Region (DISOPRED)
***************CSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHI*************TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP**********************************LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered Region (DISEMBL)
************EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR***********ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered Region (DISPRO)
**********SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG*******************SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD********************************EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE*HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK****************************************LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	497	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.963	0.956	0.597	1e-168
Q0E2P1	525	Serine/threonine protein	yes	no	0.951	0.900	0.577	1e-164
A2X2K3	525	Serine/threonine protein	N/A	no	0.951	0.900	0.577	1e-164
Q5Z8Z7	581	Serine/threonine protein	no	no	0.967	0.827	0.563	1e-161
Q38821	513	Serine/threonine protein	no	no	0.969	0.939	0.560	1e-157
Q12702	463	Protein phosphatase PP2A	yes	no	0.877	0.941	0.473	1e-120
Q6DIY3	447	Serine/threonine-protein	yes	no	0.851	0.946	0.439	1e-108
Q54Q99	483	Serine/threonine-protein	yes	no	0.929	0.956	0.442	1e-107
P36876	447	Serine/threonine-protein	yes	no	0.869	0.966	0.443	1e-107
P63150	447	Serine/threonine-protein	yes	no	0.869	0.966	0.443	1e-107

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/495 (59%), Positives = 373/495 (75%), Gaps = 16/495 (3%)

Query: 11  SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHI-S 69
           SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    K+H  S
Sbjct: 15  SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGS 74

Query: 70  RSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS 129
           R +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F+LS
Sbjct: 75  RKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLS 132

Query: 130 TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFAHGY 182
           TNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF  G 
Sbjct: 133 TNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFPPGG 192

Query: 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNL 242
                  +   + +   ++ ARC++VY HAHD++INSISN+SD ETF+SADDLR+NLWNL
Sbjct: 193 IPSL--RLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNL 250

Query: 243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 302
           EIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALCD  
Sbjct: 251 EISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSH 310

Query: 303 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 362
            ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA+++
Sbjct: 311 TKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQ 369

Query: 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422
           +HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+EA 
Sbjct: 370 VHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATLEAS 429

Query: 423 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN 482
           KN  R+ I   A  +R  S+ ++TR + R+  E+  +  +  +Y+ ++KLLH+AWHPT N
Sbjct: 430 KNPMRRQIQTPARPSR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHPTEN 486

Query: 483 LIACANGNSLFFHYA 497
            IACA  NSL+ +YA
Sbjct: 487 SIACAAANSLYMYYA 501

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  580 bits (1494), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/507 (57%), Positives = 371/507 (73%), Gaps = 34/507 (6%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSE 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    ++  SRSE
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSASRSE 90

Query: 73  LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 132
           LE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+LSTND
Sbjct: 91  LERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149

Query: 133 KTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKNFMNE 172
           KTIK WKV+++KVK+I  M+     +S+                    N   +EK +   
Sbjct: 150 KTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKLYNFP 206

Query: 173 HNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDCETFV 230
           +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD ET++
Sbjct: 207 NNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYI 262

Query: 231 SADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 290
           SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G +RL
Sbjct: 263 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRL 322

Query: 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 350
           +D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM LKLWD
Sbjct: 323 IDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWD 381

Query: 351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410
           I MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F   
Sbjct: 382 INMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCT 441

Query: 411 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS 470
            GSA   T+EA +N  R+ +      AR  +L++LTR + R+  EN     +  SY+LS+
Sbjct: 442 PGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSYDLST 498

Query: 471 KLLHLAWHPTTNLIACANGNSLFFHYA 497
           KLLHLAWHPT N IACA  NSL+ +YA
Sbjct: 499 KLLHLAWHPTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  579 bits (1492), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/507 (57%), Positives = 371/507 (73%), Gaps = 34/507 (6%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSE 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    ++  SRSE
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSASRSE 90

Query: 73  LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 132
           LE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+LSTND
Sbjct: 91  LERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149

Query: 133 KTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKNFMNE 172
           KTIK WKV+++KVK+I  M+     +S+                    N   +EK +   
Sbjct: 150 KTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKLYNFP 206

Query: 173 HNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDCETFV 230
           +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD ET++
Sbjct: 207 NNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYI 262

Query: 231 SADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 290
           SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G +RL
Sbjct: 263 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRL 322

Query: 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 350
           +D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM LKLWD
Sbjct: 323 IDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWD 381

Query: 351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410
           I MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F   
Sbjct: 382 INMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCT 441

Query: 411 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS 470
            GSA   T+EA +N  R+ +      AR  +L++LTR + R+  EN     +  SY+LS+
Sbjct: 442 PGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSYDLST 498

Query: 471 KLLHLAWHPTTNLIACANGNSLFFHYA 497
           KLLHLAWHPT N IACA  NSL+ +YA
Sbjct: 499 KLLHLAWHPTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  570 bits (1468), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/511 (56%), Positives = 373/511 (72%), Gaps = 30/511 (5%)

Query: 6   EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65
           ++   ++EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +
Sbjct: 23  QQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAR 82

Query: 66  NHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM 125
           ++ SR E+E+Q D   T HPE+RYK+EFQSHEPEFDYLKSLEIEEKIN++RWC   N S+
Sbjct: 83  DNASRREMERQ-DAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSL 141

Query: 126 FILSTNDKTIKLWKVRDQKVKKIKEMD-----------HFPFVSSENTLLA------EKN 168
            +LSTNDKTIK WKV+++KVK++  M+                SS   LL       + +
Sbjct: 142 SLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCSDKSS 201

Query: 169 FMNEHN--PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 226
           F+N     PP    GY    +  +   +A+   ++ ARC++VY HAHD++INSIS NSD 
Sbjct: 202 FLNSDILFPPG---GYP---SLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTNSDG 255

Query: 227 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286
           ET++SADDLRINLWNLEI++Q FNIVD+KP NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 256 ETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKG 315

Query: 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346
            +RL+D+RQSALCD+ ++I  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM L
Sbjct: 316 SIRLIDLRQSALCDNHSKIFEEH-EAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTL 374

Query: 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406
           KLWD+ MDS PV+TF++HEHLRPKLCDLY NDSIFDKFEC +SGDGLH ATGSY NL R+
Sbjct: 375 KLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLFRV 434

Query: 407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY 466
           F    GS    T+EA +N  R+ I+   P     +L++L RG+ R+  EN     +  S+
Sbjct: 435 FGCTPGSTEATTLEASRNPMRRQIVN--PTRPTRTLTSLARGV-RRGGENQGVDANGNSF 491

Query: 467 NLSSKLLHLAWHPTTNLIACANGNSLFFHYA 497
           + S+KLLHLAWHPT N IACA  NSL+ +YA
Sbjct: 492 DFSTKLLHLAWHPTENSIACAAANSLYMYYA 522

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  556 bits (1433), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/510 (56%), Positives = 369/510 (72%), Gaps = 28/510 (5%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           + S  LEW+ SQ FGER+  EE+Q+VDI+SAIEFD +G++LA GDRGGRV+LFE     N
Sbjct: 13  DPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNN 72

Query: 67  HI-SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM 125
              +R ELE + D+    HPE+RYKTEFQSH+PEFDYLKSLEIEEKIN++RWC   NG++
Sbjct: 73  SSGTRRELE-EADYP-LRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTANGAL 130

Query: 126 FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF------------MNEH 173
           F+LSTNDKTIK WKV+D+K+KKI +M+  P  +  N  +A  +             ++E 
Sbjct: 131 FLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGVSEV 190

Query: 174 NPPSFAHGYHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF 229
           N  S  + + L      +  +   + +  +S  ARC++VY HAHD++INSISNNSD ETF
Sbjct: 191 NN-SLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDGETF 249

Query: 230 VSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 289
           +SADDLRINLWNLEIS+Q FNIVD+KP+ M+DL+EVITSAEFHP +CN+LAYSSS+G +R
Sbjct: 250 ISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIR 309

Query: 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 349
           L+D+RQSALCD  +++  +  E  G KSFFTEIIAS+SDIKFA +G++LLSRDYM LKLW
Sbjct: 310 LIDLRQSALCDSHSKLFEEP-EQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLW 368

Query: 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409
           DI MD+ PVATF++HE+L+PKLCDLY NDSIFDKFEC +SG+GL  ATGSYSNL R+F  
Sbjct: 369 DINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRVFGV 428

Query: 410 GVGSAGGITVEAGKNENRK--PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYN 467
             GS    T+EA +N  R+  PI     RA    LS++TR + R +      G+   + +
Sbjct: 429 APGSTETATLEASRNPMRRHVPIPSRPSRA----LSSITRVVSRGSESPGVDGNTN-ALD 483

Query: 468 LSSKLLHLAWHPTTNLIACANGNSLFFHYA 497
            ++KLLHLAWHP  N IACA  NSL+ +YA
Sbjct: 484 YTTKLLHLAWHPNENSIACAAANSLYMYYA 513

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/494 (47%), Positives = 318/494 (64%), Gaps = 58/494 (11%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSE 72
           +WK +Q FG++   E++ + DI+SA+EFD TGDYLA GD+GGRV+LFE    +NH     
Sbjct: 10  QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFE----RNH----- 60

Query: 73  LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 132
                   S    EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC   N + F+LSTND
Sbjct: 61  --------SKKGCEYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTND 112

Query: 133 KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192
           KTIKLWK+ ++ +K                ++AE N  +  + P    G     ++    
Sbjct: 113 KTIKLWKLYEKNLK----------------VVAENNLSDSFHSP--MQGPLTTPSQLRLP 154

Query: 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 252
           ++ +    + A  ++VY +AH ++INSIS NSD ET++SADDLRINLWNL ISD  FNIV
Sbjct: 155 RLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHSFNIV 214

Query: 253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 312
           D+KP NM++LTEVITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+  ++  D  E 
Sbjct: 215 DIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFED-QED 273

Query: 313 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 372
             SKSFF+EII+SISD+KF+ +G+++LSRDY+ LK+WD+ M+  PV T  +H+ LR KLC
Sbjct: 274 QDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLC 333

Query: 373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKNENRKP 429
           DLY ND IFDKFEC+ SGD  H  +GSYSN   I+   S   G  G I ++A K      
Sbjct: 334 DLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADK------ 387

Query: 430 ILQAAPRARRSSLSNLT----------RGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 479
              AA RAR+S+ +N+           R   + A  ++S G    + + + K+LH +WHP
Sbjct: 388 ---AAFRARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDNLDYNKKILHASWHP 444

Query: 480 TTNLIACANGNSLF 493
             + +A A  N+LF
Sbjct: 445 FEDSVAIAATNNLF 458

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/492 (43%), Positives = 303/492 (61%), Gaps = 69/492 (14%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 10  FQWCFSQVKGA--IDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQR---------- 57

Query: 72  ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
             E++      S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTN
Sbjct: 58  --EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 115

Query: 132 DKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182
           DKTIKLWK+  RD++V+         +  D F   S    +L   + M E +P       
Sbjct: 116 DKTIKLWKISERDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP------- 168

Query: 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNL 242
                                  ++++ +AH ++INSIS NSD ET++SADDLRINLW+L
Sbjct: 169 -----------------------RRIFANAHTYHINSISVNSDHETYLSADDLRINLWHL 205

Query: 243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 302
           EI+D+ FNIVD+KP+NM++LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  
Sbjct: 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRH 265

Query: 303 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 362
           ++   +  E   S+SFF+EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T++
Sbjct: 266 SKFFEE-PEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQ 324

Query: 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422
           +HE+LR KLC LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA 
Sbjct: 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDR--NTRRDITLEAS 382

Query: 423 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN 482
           + E+ KP     PR        +  G  R+  E +       S + + K+LH AWHPT N
Sbjct: 383 R-ESSKPRAILKPR-------KVCTGGKRKKDEINVD-----SLDFNKKILHTAWHPTDN 429

Query: 483 LIACANGNSLFF 494
           +IA A  N+L+ 
Sbjct: 430 IIAVAATNNLYI 441

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q54Q99|PH2AB_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit phr2AB OS=Dictyostelium discoideum GN=phr2aB PE=3 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/499 (44%), Positives = 316/499 (63%), Gaps = 37/499 (7%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
           L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    +S
Sbjct: 5   LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDKQSSKKS 63

Query: 72  ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
           +L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+L+TN
Sbjct: 64  KL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFLLTTN 112

Query: 132 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEWTENM 190
           DKTIKLWKV ++K+K++         S   +L +       H    + + G H       
Sbjct: 113 DKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASNNTRSPSHTTYIYNSSGAHNMNNNMN 172

Query: 191 AT------------KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRIN 238
            +            K+      V A  +K++ +AH ++INSIS NSD ET++S+DDLRI+
Sbjct: 173 NSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDDLRIH 232

Query: 239 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 298
           LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R SAL
Sbjct: 233 LWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLRSSAL 292

Query: 299 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 358
           CD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWDI M++ PV
Sbjct: 293 CDNHAKVFEE-YEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINMENKPV 351

Query: 359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 418
            T +IH++L+PKLCDLY ND IFDKFEC+++ DG    TGSY N L I+     S   + 
Sbjct: 352 KTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIYDR--NSKQDVC 409

Query: 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 478
           +EA K        QA     ++  + +     ++  +     H + +   + K LH AWH
Sbjct: 410 LEASK--------QATKSKTKTLTTKMKLRSSKKEPKKPEDIHPD-AIEYTKKTLHCAWH 460

Query: 479 PTTNLIACANGNSLFFHYA 497
           P  NLIA    N+++ + A
Sbjct: 461 PKDNLIAVGAANTVYLYAA 479

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Dictyostelium discoideum (taxid: 44689)

>sp|P36876|2ABA_RAT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Rattus norvegicus GN=Ppp2r2a PE=2 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 301/483 (62%), Gaps = 51/483 (10%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
           ++W  SQ  G    D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+           
Sbjct: 10  IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57

Query: 72  ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
             E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTN
Sbjct: 58  --EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115

Query: 132 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191
           DKTIKLW        KI E D  P    E   L E++    +  P+      +     M 
Sbjct: 116 DKTIKLW--------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMD 161

Query: 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI 251
                    V A  ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNI
Sbjct: 162 LM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNI 214

Query: 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 311
           VD+KP+NM++LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E
Sbjct: 215 VDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PE 273

Query: 312 SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371
              ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KL
Sbjct: 274 DPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKL 333

Query: 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 431
           C LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP  
Sbjct: 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRT 390

Query: 432 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491
              PR   +S         R+  E S       S + + K+LH AWHP  N+IA A  N+
Sbjct: 391 VLKPRKVCASGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNN 438

Query: 492 LFF 494
           L+ 
Sbjct: 439 LYI 441

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Rattus norvegicus (taxid: 10116)

>sp|P63150|2ABA_RABIT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryctolagus cuniculus GN=PPP2R2A PE=2 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 301/483 (62%), Gaps = 51/483 (10%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
           ++W  SQ  G    D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+           
Sbjct: 10  IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57

Query: 72  ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
             E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTN
Sbjct: 58  --EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115

Query: 132 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191
           DKTIKLW        KI E D  P    E   L E++    +  P+      +     M 
Sbjct: 116 DKTIKLW--------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMD 161

Query: 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI 251
                    V A  ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNI
Sbjct: 162 LM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNI 214

Query: 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 311
           VD+KP+NM++LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E
Sbjct: 215 VDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PE 273

Query: 312 SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371
              ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KL
Sbjct: 274 DPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKL 333

Query: 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 431
           C LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP  
Sbjct: 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRT 390

Query: 432 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491
              PR   +S         R+  E S       S + + K+LH AWHP  N+IA A  N+
Sbjct: 391 VLKPRKVCASGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNN 438

Query: 492 LFF 494
           L+ 
Sbjct: 439 LYI 441

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
359491379	507	PREDICTED: serine/threonine protein phos	0.983	0.964	0.736	0.0
297733754	503	unnamed protein product [Vitis vinifera]	0.983	0.972	0.742	0.0
224133594	520	predicted protein [Populus trichocarpa]	0.979	0.936	0.700	0.0
255540613	506	protein phosphatase pp2a regulatory subu	0.969	0.952	0.734	0.0
449440662	514	PREDICTED: serine/threonine protein phos	0.995	0.963	0.656	0.0
356508685	506	PREDICTED: serine/threonine protein phos	0.987	0.970	0.625	0.0
413950527	515	hypothetical protein ZEAMMB73_989132 [Ze	0.959	0.926	0.6	1e-166
212274793	514	uncharacterized protein LOC100191387 [Ze	0.959	0.928	0.603	1e-166
30685484	500	Protein phosphatase 2A, regulatory subun	0.953	0.948	0.595	1e-166
224088860	521	predicted protein [Populus trichocarpa]	0.965	0.921	0.587	1e-166

>gi|359491379|ref|XP_002278753.2| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/504 (73%), Positives = 436/504 (86%), Gaps = 15/504 (2%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKD 65

Query: 67  HI----SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 122
            +    SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 66  SLNQWHSRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 124

Query: 123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 125 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 184

Query: 183 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 233
            LEWTE   NM+       K+AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 185 ALEWTEKIDNMSPSQDTHAKVANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 244

Query: 234 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 245 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 304

Query: 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 353
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 305 RQSAICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 363

Query: 354 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413
           +++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS
Sbjct: 364 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGS 423

Query: 414 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 473
             GIT+EA +N NRK  LQAAP+ARRSS+SNLTRG  RQA+EN SSG +ELS NLSSKLL
Sbjct: 424 EEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLL 483

Query: 474 HLAWHPTTNLIACANGNSLFFHYA 497
           HLAWHPTT  IACA GNSL+ +YA
Sbjct: 484 HLAWHPTTKFIACAAGNSLYMYYA 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733754|emb|CBI15001.3| unnamed protein product [Vitis vinifera]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/500 (74%), Positives = 434/500 (86%), Gaps = 11/500 (2%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKD 65

Query: 67  HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 126
             SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN S+F
Sbjct: 66  WHSRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPNESLF 124

Query: 127 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186
           ILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY LEW
Sbjct: 125 ILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGYALEW 184

Query: 187 TE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRI 237
           TE   NM+       K AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSADDLRI
Sbjct: 185 TEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSADDLRI 244

Query: 238 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 297
           NLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+RQSA
Sbjct: 245 NLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDLRQSA 304

Query: 298 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP 357
           +CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM+++P
Sbjct: 305 ICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRMETSP 363

Query: 358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 417
           VA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS  GI
Sbjct: 364 VAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGSEEGI 423

Query: 418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAW 477
           T+EA +N NRK  LQAAP+ARRSS+SNLTRG  RQA+EN SSG +ELS NLSSKLLHLAW
Sbjct: 424 TMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLLHLAW 483

Query: 478 HPTTNLIACANGNSLFFHYA 497
           HPTT  IACA GNSL+ +YA
Sbjct: 484 HPTTKFIACAAGNSLYMYYA 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133594|ref|XP_002321613.1| predicted protein [Populus trichocarpa] gi|222868609|gb|EEF05740.1| predicted protein [Populus trichocarpa]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/507 (70%), Positives = 416/507 (82%), Gaps = 20/507 (3%)

Query: 9   SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK--- 65
           S  L+WK SQ FGE  P E+LQDVD+VS+I F+K+GDYLAVGDRGGRV++F+   GK   
Sbjct: 16  SPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRGGRVVIFQAKHGKHTP 75

Query: 66  -NHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 124
            + ++R+ELE+ +D   T+HPEY+YKTEFQSHEPEFDYLKS+EIEEKINRV+WC+  NGS
Sbjct: 76  NSFLNRNELER-LDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGS 134

Query: 125 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184
           +FILSTNDKTIKLWKV ++K+KK++EM+H   V SEN LL E +FM+E + P   +GY+L
Sbjct: 135 LFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNL 194

Query: 185 EWTENMA----------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 234
           +W E +A          TKI +   +  A C+KVY HAHDFNINSISNNSD ETF+S+DD
Sbjct: 195 DWAEKIAKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDD 254

Query: 235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 294
           LRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT AEFHPI+CNLLAYSSSRGF RLVDMR
Sbjct: 255 LRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLAYSSSRGFTRLVDMR 314

Query: 295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 354
           QSA+CDHSARIL+DA E  GSKSFFTE+IASISD+KF  DGQH+L+RDYMNLKLWD+RMD
Sbjct: 315 QSAICDHSARILQDA-ECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLWDMRMD 373

Query: 355 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414
           S+PVA FKIHEHLRPKL DLYN+DSIFDKFEC +SGDGLHFATGSYSN LRIFSHGVG+ 
Sbjct: 374 SSPVAVFKIHEHLRPKLSDLYNDDSIFDKFECCISGDGLHFATGSYSNNLRIFSHGVGNE 433

Query: 415 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ----AHENSSSGHHELSYNLSS 470
            GIT+EA KN NR+ IL +  R RRSSLSN+ RG YRQ     HEN  SG +E S NLSS
Sbjct: 434 EGITIEASKNPNRRSILHSTSRPRRSSLSNMARGFYRQVDYVGHENYRSGSNEFSCNLSS 493

Query: 471 KLLHLAWHPTTNLIACANGNSLFFHYA 497
           KLLHLAWHPTTN IACA+GNSL  ++A
Sbjct: 494 KLLHLAWHPTTNFIACASGNSLLMYHA 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540613|ref|XP_002511371.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gi|223550486|gb|EEF51973.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/497 (73%), Positives = 417/497 (83%), Gaps = 15/497 (3%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN----H 67
           LEWK SQ FGER P E++QD D+VSAIEFDK+GDYLAVGDRGGRV++FE    K+    +
Sbjct: 14  LEWKFSQVFGERIPGEDVQDADVVSAIEFDKSGDYLAVGDRGGRVVIFERKDRKDTPNQY 73

Query: 68  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 127
            SR+ELE  +DFT T HP Y+YKTEFQSHEPEFDYLKSLEIEEKINR++WCA PNGS+FI
Sbjct: 74  NSRNELE-TLDFTFTGHPIYQYKTEFQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFI 132

Query: 128 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187
           LSTNDKTIKLWKV++ K KK+KE+D    V SE+ LLAE++F+ E   PS  +GYHL WT
Sbjct: 133 LSTNDKTIKLWKVKECKAKKVKEIDPTSIVCSESALLAERSFIREQGKPS--NGYHLGWT 190

Query: 188 ENMA-------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW 240
           EN +       TK A   ++  A C+KVY HAHDFNINSISNNSD ETF+SADDLRINLW
Sbjct: 191 ENNSSPFQEGHTKFACAEDTTRASCRKVYAHAHDFNINSISNNSDGETFISADDLRINLW 250

Query: 241 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 300
           NLEISDQCFNI+DMKPSNM+DLTEVITSAEFHP+YCN+LAYSSSRGF+ LVDMRQSALCD
Sbjct: 251 NLEISDQCFNIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSSRGFIHLVDMRQSALCD 310

Query: 301 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 360
            SARIL+DA E  GSKSFFTEIIASISD+KF NDG H+LSRDYMNLKLWDIRMD  P++ 
Sbjct: 311 QSARILQDA-ECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMNLKLWDIRMDPLPISI 369

Query: 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420
           FKIHEHLRPKL DLYNNDSIFDKFEC +SGDGLHFATGSYSNLLRIFS+GVGS  GITVE
Sbjct: 370 FKIHEHLRPKLSDLYNNDSIFDKFECCISGDGLHFATGSYSNLLRIFSYGVGSENGITVE 429

Query: 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT 480
           A KN NRK + ++  RARRSSLSNLTRG Y   +ENSSSG +E S +L+SKLLHLAWHPT
Sbjct: 430 ASKNPNRKSLPRSTSRARRSSLSNLTRGFYWHGNENSSSGGNEFSCDLTSKLLHLAWHPT 489

Query: 481 TNLIACANGNSLFFHYA 497
           TN+IAC++GNSL+ +YA
Sbjct: 490 TNMIACSSGNSLYMYYA 506

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440662|ref|XP_004138103.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/516 (65%), Positives = 405/516 (78%), Gaps = 21/516 (4%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGK----NHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116
              GK    N+ +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 117 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 176
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 177 SFAHGYHLEWTENMATK----------IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 226
           S ++G H   +ENM             IA+  N+   RC+KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 227 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406
           KLWDI   S+PVA FKIHEHLRP+LC+LY+NDSIFD+FEC +S DGLHFATGSYSN LR+
Sbjct: 359 KLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNHLRM 418

Query: 407 FSHGVGSAGGITVEAGKNENRKPILQ-----AAPRARRSSLSNLTRGLYRQAHENSSSGH 461
           FS+G GS+ GIT E GK  +R+P LQ        RARRSSLSNLTR  +R   E+SSS  
Sbjct: 419 FSYGSGSSEGITTEVGKFPDRRPHLQITRQATTRRARRSSLSNLTRDFFRHGSEHSSSDG 478

Query: 462 HELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 497
            E S +L+SKLLHLAWHP+ NLIACA G+ LF +YA
Sbjct: 479 SETSVDLNSKLLHLAWHPSENLIACAAGSGLFVYYA 514

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508685|ref|XP_003523085.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/512 (62%), Positives = 395/512 (77%), Gaps = 21/512 (4%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M  N + +SA L WK SQ  G+R P+E LQ+ DI++A+ F+K GDYLAVGDRGGRV++FE
Sbjct: 1   MTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFE 60

Query: 61  TVGGKNHIS----RSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116
               K ++S    R ELE Q DF ++ HPE+R+KTEFQSHEPEFDYLKS+EIEEKIN+VR
Sbjct: 61  RDDRKKNVSIANDRRELE-QRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVR 119

Query: 117 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 176
           W  + +   FILSTNDKTIKLWKV++ KVK++KEM   P + SEN LLAE++F+      
Sbjct: 120 WWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMA--PPLCSENMLLAERSFVP--GLE 175

Query: 177 SFAHGYHLEWTE----------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 226
           + A+GYHLEW E          ++  +I  + + + A+CQKVY +AH FNINSISNNSD 
Sbjct: 176 TTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDY 235

Query: 227 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286
           ETF+SADDLRINLWNLE+SDQCFNI+DMKPSNM+DLTEVIT+AEFHP++CNLLAYSSS+G
Sbjct: 236 ETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQG 295

Query: 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346
           F+RL D+RQ+A+CDH++R+ +   ES GSKSFFTEI +SISDIKF NDGQHL+SR+YMN+
Sbjct: 296 FIRLSDLRQAAICDHASRMFQHG-ESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNM 354

Query: 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406
           KLWD+RM+S+PVA FKIHEHLRPKL +LYNND IFDKFEC  SGDGLHFATGSYSN++RI
Sbjct: 355 KLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNVVRI 414

Query: 407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQAHENSSSGHHELS 465
           FS G      I +E   N +RK I QA  R RR SLSNL  R +Y+ AH +S S   + S
Sbjct: 415 FSPGSERKEEIKLEIRGNSHRKVIHQAKSRVRRPSLSNLIPREIYQHAHTDSESSRADFS 474

Query: 466 YNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 497
            NLSSKLLH+AWHPT NL+ CA  +SL  +YA
Sbjct: 475 CNLSSKLLHVAWHPTCNLVVCAAESSLVLYYA 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413950527|gb|AFW83176.1| hypothetical protein ZEAMMB73_989132 [Zea mays]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/490 (60%), Positives = 375/490 (76%), Gaps = 13/490 (2%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
           LEW+ SQ FGER+  EE+Q+VDI+SAIEF+K+G +LA GDRGGRV+LFE    K+H  R 
Sbjct: 35  LEWRFSQVFGERSAGEEVQEVDIISAIEFNKSGHHLATGDRGGRVVLFERTDVKDHACRK 94

Query: 72  ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
           + EK  D + + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC A NG++++LSTN
Sbjct: 95  DAEK-ADHSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINQIKWCQAANGALYLLSTN 153

Query: 132 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE--- 188
           DKTIK WKV+++KVKK+ EM+     +  N       +++    PS ++G  L+      
Sbjct: 154 DKTIKFWKVQEKKVKKLSEMNLDRSAAPANGSPGGVGYLS----PSLSNGNALKPGRLPL 209

Query: 189 -NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 247
             +   + +   S+   C++VY HAHD++INSISNNSD ETF+SADDLRINLWNLEIS+Q
Sbjct: 210 LRLPVVVTSQETSLATSCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 269

Query: 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 307
            FNI+D+KP+NM+DLTEVITSAEFHP +CN LAYSSS+G +RLVD+RQSALCD   +I  
Sbjct: 270 SFNIIDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDTHYQIF- 328

Query: 308 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 367
           +  E+ GS+SFFTEIIASISDIKF+ DG+HLLSRDYM LKLWD++M+S PVATF++HE+L
Sbjct: 329 EQHEAPGSRSFFTEIIASISDIKFSKDGRHLLSRDYMTLKLWDVKMNSGPVATFQVHEYL 388

Query: 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427
           RPKLCDLY NDSIFDKFEC  SGDGL  ATGSYSN+ R+F  G G++   T+EA +N  R
Sbjct: 389 RPKLCDLYENDSIFDKFECCQSGDGLRVATGSYSNIFRVFGCGTGNSEATTLEATRNPTR 448

Query: 428 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 487
           +  LQ   RA R SLS+LTR + R+  E++    +  SY+LS+KLLHLAWHP+ NLIACA
Sbjct: 449 RQ-LQNPTRATR-SLSSLTRAV-RRGGESTGIDVNGNSYDLSTKLLHLAWHPSENLIACA 505

Query: 488 NGNSLFFHYA 497
             NSL+ +YA
Sbjct: 506 AANSLYMYYA 515

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212274793|ref|NP_001130293.1| uncharacterized protein LOC100191387 [Zea mays] gi|194688766|gb|ACF78467.1| unknown [Zea mays] gi|413950526|gb|AFW83175.1| hypothetical protein ZEAMMB73_989132 [Zea mays]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/489 (60%), Positives = 376/489 (76%), Gaps = 12/489 (2%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
           LEW+ SQ FGER+  EE+Q+VDI+SAIEF+K+G +LA GDRGGRV+LFE    K+H  R 
Sbjct: 35  LEWRFSQVFGERSAGEEVQEVDIISAIEFNKSGHHLATGDRGGRVVLFERTDVKDHACRK 94

Query: 72  ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
           + EK  D + + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC A NG++++LSTN
Sbjct: 95  DAEK-ADHSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINQIKWCQAANGALYLLSTN 153

Query: 132 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191
           DKTIK WKV+++KVKK+ EM+     +  N       +++    PS ++G  L+      
Sbjct: 154 DKTIKFWKVQEKKVKKLSEMNLDRSAAPANGSPGGVGYLS----PSLSNGNALKPGRLPL 209

Query: 192 TKIANVGN---SVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 248
            ++  V +   S+   C++VY HAHD++INSISNNSD ETF+SADDLRINLWNLEIS+Q 
Sbjct: 210 LRLPVVTSQETSLATSCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 269

Query: 249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 308
           FNI+D+KP+NM+DLTEVITSAEFHP +CN LAYSSS+G +RLVD+RQSALCD   +I  +
Sbjct: 270 FNIIDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDTHYQIF-E 328

Query: 309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR 368
             E+ GS+SFFTEIIASISDIKF+ DG+HLLSRDYM LKLWD++M+S PVATF++HE+LR
Sbjct: 329 QHEAPGSRSFFTEIIASISDIKFSKDGRHLLSRDYMTLKLWDVKMNSGPVATFQVHEYLR 388

Query: 369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 428
           PKLCDLY NDSIFDKFEC  SGDGL  ATGSYSN+ R+F  G G++   T+EA +N  R+
Sbjct: 389 PKLCDLYENDSIFDKFECCQSGDGLRVATGSYSNIFRVFGCGTGNSEATTLEATRNPTRR 448

Query: 429 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 488
             LQ   RA R SLS+LTR + R+  E++    +  SY+LS+KLLHLAWHP+ NLIACA 
Sbjct: 449 Q-LQNPTRATR-SLSSLTRAV-RRGGESTGIDVNGNSYDLSTKLLHLAWHPSENLIACAA 505

Query: 489 GNSLFFHYA 497
            NSL+ +YA
Sbjct: 506 ANSLYMYYA 514

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685484|ref|NP_849681.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191506|gb|AEE29627.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 297/499 (59%), Positives = 376/499 (75%), Gaps = 25/499 (5%)

Query: 11  SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHI-S 69
           SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    K+H  S
Sbjct: 15  SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGS 74

Query: 70  RSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS 129
           R +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F+LS
Sbjct: 75  RKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLS 132

Query: 130 TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEK--NFMNE--HNPPSF 178
           TNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K  +++++    PP  
Sbjct: 133 TNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFPPGG 192

Query: 179 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRIN 238
                L    +  T +        ARC++VY HAHD++INSISN+SD ETF+SADDLR+N
Sbjct: 193 IPSLRLPVVTSQETNLV-------ARCRRVYAHAHDYHINSISNSSDGETFISADDLRVN 245

Query: 239 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 298
           LWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSAL
Sbjct: 246 LWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSAL 305

Query: 299 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 358
           CD   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PV
Sbjct: 306 CDSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPV 364

Query: 359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 418
           A++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T
Sbjct: 365 ASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAAT 424

Query: 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 478
           +EA KN  R+ I   A  +R  S+ ++TR + R+  E+  +  +  +Y+ ++KLLH+AWH
Sbjct: 425 LEASKNPMRRQIQTPARPSR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWH 481

Query: 479 PTTNLIACANGNSLFFHYA 497
           PT N IACA  NSL+ +YA
Sbjct: 482 PTENSIACAAANSLYMYYA 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/502 (58%), Positives = 377/502 (75%), Gaps = 22/502 (4%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHIS-R 70
           LEWK +Q FGER   EE+Q+VDI+SAIEFD+TGD+LA GDRGGRV+LFE    ++H   R
Sbjct: 26  LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERTDTRDHGGNR 85

Query: 71  SELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST 130
            +LE+ MDF    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC + NG++F+LST
Sbjct: 86  RDLER-MDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFLLST 144

Query: 131 NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190
           NDKTIK WKV+++KVKKI +M+  P  ++ N  L   + ++  + P  A+G  L+    +
Sbjct: 145 NDKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPS-ISTSSKPYTANGGCLDKPLGL 203

Query: 191 ATK---------------IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDL 235
           +                 + ++  S+  RC+++Y HAHD++INSISNNSD ETF+SADDL
Sbjct: 204 SNDFSFPPGGVSSLHLPVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISADDL 263

Query: 236 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295
           RINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSSRG +RLVDMRQ
Sbjct: 264 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVDMRQ 323

Query: 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS 355
           SALCD  +++  +  E  GS+SFFTEIIASISDIKFA DG+++LSRDYM LKLWDI MDS
Sbjct: 324 SALCDSHSKLFEE-QEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDS 382

Query: 356 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415
            PV+TF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS  
Sbjct: 383 GPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDGSTE 442

Query: 416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL 475
             T+EA KN  R+ + Q   R  R SL  L+RG +R+  + S +  +  +++ ++KLLHL
Sbjct: 443 ATTLEASKNPMRRQV-QTPSRPSR-SLGTLSRG-FRRGADTSGADTNGNAFDFTTKLLHL 499

Query: 476 AWHPTTNLIACANGNSLFFHYA 497
           AWHPT N +ACA  NSL+ +YA
Sbjct: 500 AWHPTENSLACAASNSLYMYYA 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
TAIR|locus:2007963	501	ATB BETA [Arabidopsis thaliana	0.963	0.956	0.585	1.1e-149
DICTYBASE|DDB_G0283905	483	phr2aB "protein phosphatase 2A	0.915	0.942	0.432	5.7e-107
ASPGD|ASPL0000046009	472	AN1545 [Emericella nidulans (t	0.788	0.830	0.442	1.9e-104
CGD|CAL0004658	519	orf19.1468 [Candida albicans (	0.430	0.412	0.525	5.6e-103
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.557	0.619	0.477	1.4e-101
WB|WBGene00006352	495	sur-6 [Caenorhabditis elegans	0.573	0.575	0.491	1.6e-100
UNIPROTKB|Q7ZX64	447	ppp2r2d "Serine/threonine-prot	0.557	0.619	0.460	8.6e-100
UNIPROTKB|F1NNN2	450	PPP2R2D "Serine/threonine-prot	0.557	0.615	0.467	1.8e-99
UNIPROTKB|F1NS69	451	PPP2R2D "Serine/threonine-prot	0.557	0.614	0.467	1.8e-99
UNIPROTKB|Q5ZIY5	451	PPP2R2D "Serine/threonine-prot	0.557	0.614	0.467	1.8e-99

TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)]

 Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
 Identities = 290/495 (58%), Positives = 366/495 (73%)

Query:    11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHI-S 69
             SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    K+H  S
Sbjct:    15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGS 74

Query:    70 RSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS 129
             R +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F+LS
Sbjct:    75 RKDLE-QTDYP-VRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLS 132

Query:   130 TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFAHGY 182
             TNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF  G 
Sbjct:   133 TNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFPPG- 191

Query:   183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNL 242
              +  +  +   + +   ++ ARC++VY HAHD+         D ETF+SADDLR+NLWNL
Sbjct:   192 GIP-SLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNL 250

Query:   243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 302
             EIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALCD  
Sbjct:   251 EISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSH 310

Query:   303 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 362
              ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA+++
Sbjct:   311 TKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQ 369

Query:   363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422
             +HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+EA 
Sbjct:   370 VHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATLEAS 429

Query:   423 KNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN 482
             KN  R+ I Q   R  RS + ++TR + R+  E+  +  +  +Y+ ++KLLH+AWHPT N
Sbjct:   430 KNPMRRQI-QTPARPSRS-IGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHPTEN 486

Query:   483 LIACANGNSLFFHYA 497
              IACA  NSL+ +YA
Sbjct:   487 SIACAAANSLYMYYA 501

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISS

DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 219/506 (43%), Positives = 313/506 (61%)

Query:    12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
             L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    +S
Sbjct:     5 LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDKQSSKKS 63

Query:    72 ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
             +L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+L+TN
Sbjct:    64 KL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFLLTTN 112

Query:   132 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191
             DKTIKLWKV ++K+K++         S   +L +     N  +P    + Y+     NM 
Sbjct:   113 DKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASN----NTRSPSHTTYIYNSSGAHNMN 168

Query:   192 TKIANVGNS-----------------VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADD 234
               + N  N+                 V A  +K++ +AH +         D ET++S+DD
Sbjct:   169 NNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDD 228

Query:   235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 294
             LRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R
Sbjct:   229 LRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLR 288

Query:   295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 354
              SALCD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWDI M+
Sbjct:   289 SSALCDNHAKVFEEY-EDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINME 347

Query:   355 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414
             + PV T +IH++L+PKLCDLY ND IFDKFEC+++ DG    TGSY N L I+       
Sbjct:   348 NKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIYD------ 401

Query:   415 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQAHENSSSGH--HELSYNLSSK 471
                     +N  +   L+A+ +A +S    LT  +  R + +        H  +   + K
Sbjct:   402 --------RNSKQDVCLEASKQATKSKTKTLTTKMKLRSSKKEPKKPEDIHPDAIEYTKK 453

Query:   472 LLHLAWHPTTNLIACANGNSLFFHYA 497
              LH AWHP  NLIA    N+++ + A
Sbjct:   454 TLHCAWHPKDNLIAVGAANTVYLYAA 479

GO:0005615 "extracellular space" evidence=IDA

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

ASPGD|ASPL0000046009 AN1545 [Emericella nidulans (taxid:162425)]

 Score = 886 (316.9 bits), Expect = 1.9e-104, Sum P(2) = 1.9e-104
 Identities = 185/418 (44%), Positives = 267/418 (63%)

Query:    86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 145
             EY++ TEFQSHEPEFDYLKSLEIEEKIN+++WC   N S F+LSTNDKTIKLWKV D+ +
Sbjct:    66 EYKFHTEFQSHEPEFDYLKSLEIEEKINKIKWCRRQNASHFLLSTNDKTIKLWKVFDKSL 125

Query:   146 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS---VH 202
             K + E +    +S+E T       +     P       + + ++ A K+  + +    V 
Sbjct:   126 KVVAENN----LSTELT----PGGVGGGGAP---RAPRVSFKDSSALKLPRMTHHDTVVA 174

Query:   203 ARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 262
             A  ++ Y +AH +         D ETF+S+DDLR+NLWNL I DQ FNIVD+KP+NM++L
Sbjct:   175 AVPRRTYANAHAYHINSISVNSDGETFISSDDLRVNLWNLNIQDQSFNIVDIKPANMEEL 234

Query:   263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322
             TEVIT+AEFHP  CN   Y+SS+G ++L DMRQ ALCD   ++  +  E   S+SFF+EI
Sbjct:   235 TEVITAAEFHPTSCNWFMYASSKGTIKLADMRQRALCDTHHKLF-EQEEDASSRSFFSEI 293

Query:   323 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 382
             I+SISD++F++DG++++SRDY+ +K+WD+ M+  PV T  IHEHLRP+LCD Y NDSIFD
Sbjct:   294 ISSISDVRFSHDGRYIVSRDYLTVKIWDVNMERQPVKTIPIHEHLRPRLCDTYENDSIFD 353

Query:   383 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN--ENRK-----PILQAAP 435
             KFE   SGD  +  TGSY+N   I+         I ++A K+  + +K     P+ + A 
Sbjct:   354 KFEVVFSGDAENVMTGSYNNNFMIYPTDPAKETEIVLQADKSAFKAKKVGVPTPMNKGAN 413

Query:   436 RARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493
               + +S ++   G   +  + + +   ++ +N   K+LH++WHP  + IA A  N+LF
Sbjct:   414 GKKSNSRTSSPAGPGSRMKKETDAD--QIDFN--KKILHMSWHPFEDSIAIAATNNLF 467

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)]

 Score = 621 (223.7 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
 Identities = 113/215 (52%), Positives = 154/215 (71%)

Query:   201 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 260
             + A+ +K+Y +AH +         D ET++SADDLRINLWNL I+DQ FNIVD+KP+NM+
Sbjct:   159 ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNIVDIKPANME 218

Query:   261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320
             +LTEVITSAEFHP  CNL  YSSS+G ++L DMR ++LCD  A+I  +  +   S +FFT
Sbjct:   219 ELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLDP-SSHNFFT 277

Query:   321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
             EI +SISD+KF++DG+++ SRDYM +K+WD+ M++ P+ T  +HEHLR +LCD Y ND+I
Sbjct:   278 EITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPLKTIDVHEHLRERLCDTYENDAI 337

Query:   381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415
             FDKFE    GD     TGSY+N   I+ + V   G
Sbjct:   338 FDKFEVQFGGDNKSVMTGSYNNQFVIYPNAVNKGG 372

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0001100 "negative regulation of exit from mitosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 702 (252.2 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
 Identities = 140/293 (47%), Positives = 197/293 (67%)

Query:   201 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 260
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   164 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223

Query:   261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   224 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEEP-EDPSSRSFFS 282

Query:   321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
             EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct:   283 EIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342

Query:   381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   343 FDKFECCWNGSDSAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 395

Query:   441 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493
                  T G  ++   N  S    L +N   K+LH AWHPT N+IA A  N+L+
Sbjct:   396 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPTDNIIAVAATNNLY 440

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

WB|WBGene00006352 sur-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 712 (255.7 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
 Identities = 145/295 (49%), Positives = 196/295 (66%)

Query:   201 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 260
             V A  ++VY +AH +         D ETF+SADDLR+NLWNLEI+++ FNIVD+KP+NM+
Sbjct:   204 VEASPRRVYGNAHTYHVNSISVNSDQETFLSADDLRVNLWNLEITNESFNIVDIKPANME 263

Query:   261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320
             +LTEVIT+AEFHP  CN   YSSS+G +RL DMR  ALCD  A+I  +  E   S+SFF+
Sbjct:   264 ELTEVITAAEFHPTQCNWFVYSSSKGSIRLCDMRDRALCDAYAKIFEEP-EDPQSRSFFS 322

Query:   321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
             EIIAS+SD+KF+++G++LL+RDY+ +K+WD+ M+S PV T+ +H +LR KLC LY NDSI
Sbjct:   323 EIIASVSDVKFSHNGRYLLTRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSI 382

Query:   381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ--AAPRAR 438
             FDKFEC  SGD  H  TGSY NL R ++ G  +    T EA   E    +      P A+
Sbjct:   383 FDKFECDWSGDDKHILTGSYHNLFRSYARG-NNQDAKTWEARPQEPHSQLRSRFVVPSAK 441

Query:   439 RSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493
             R   +NL+        E+ SS   +L ++   K+LH AWHP  N+IA A  N+L+
Sbjct:   442 RKR-NNLSSS-GETTEEDLSSD--QLQFD--RKILHTAWHPKDNIIALAATNNLY 490

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0040026 "positive regulation of vulval development" evidence=IGI;IMP

UNIPROTKB|Q7ZX64 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus laevis (taxid:8355)]

 Score = 689 (247.6 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
 Identities = 135/293 (46%), Positives = 197/293 (67%)

Query:   201 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 260
             V A  ++++ +AH +         D +T++SADDLR+NLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   164 VEASPRRIFANAHTYHINSISVNSDHQTYLSADDLRVNLWHLEITDRSFNIVDIKPANME 223

Query:   261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320
             +LTEVIT+AEFHP +C++  YSSS+G +RL DMR +ALCD  ++   +  E   S+SFF+
Sbjct:   224 ELTEVITAAEFHPHHCHMFVYSSSKGTIRLCDMRDAALCDRHSKFFEEP-EDPSSRSFFS 282

Query:   321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
             EII+SISD+KF++ G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct:   283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342

Query:   381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   343 FDKFECCWNGSDSSIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRATLKPR---- 395

Query:   441 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493
                  T G  ++   N  S    L +N   K+LH AWHPT N+IA A  N+L+
Sbjct:   396 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPTDNIIAVAATNNLY 440

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007067 "mitosis" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IMP

GO:0010458 "exit from mitosis" evidence=IMP

UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 686 (246.5 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 137/293 (46%), Positives = 196/293 (66%)

Query:   201 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 260
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   167 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 226

Query:   261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   227 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 285

Query:   321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   286 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 345

Query:   381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   346 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 398

Query:   441 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493
                  T G  ++   N  S    L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   399 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 443

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 686 (246.5 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 137/293 (46%), Positives = 196/293 (66%)

Query:   201 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 260
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346

Query:   381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   347 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 399

Query:   441 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493
                  T G  ++   N  S    L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   400 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 444

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 686 (246.5 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 137/293 (46%), Positives = 196/293 (66%)

Query:   201 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 260
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346

Query:   381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   347 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 399

Query:   441 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493
                  T G  ++   N  S    L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   400 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 444

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.5779	0.9517	0.9009	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.5979	0.9637	0.9560	yes	no
Q54Q99	PH2AB_DICDI	No assigned EC number	0.4428	0.9295	0.9565	yes	no
Q6DIY3	2ABD_XENTR	No assigned EC number	0.4390	0.8511	0.9463	yes	no
P36876	2ABA_RAT	No assigned EC number	0.4430	0.8692	0.9664	yes	no
P36872	2ABA_DROME	No assigned EC number	0.4285	0.8611	0.8577	yes	no
Q29090	2ABA_PIG	No assigned EC number	0.4477	0.8450	0.9859	yes	no
Q12702	2ABA_SCHPO	No assigned EC number	0.4736	0.8772	0.9416	yes	no
P63151	2ABA_HUMAN	No assigned EC number	0.4430	0.8692	0.9664	yes	no
P63150	2ABA_RABIT	No assigned EC number	0.4430	0.8692	0.9664	yes	no
Q6NY64	2ABD_DANRE	No assigned EC number	0.4268	0.8511	0.9463	yes	no
A2X2K3	2ABB_ORYSI	No assigned EC number	0.5779	0.9517	0.9009	N/A	no
Q6P1F6	2ABA_MOUSE	No assigned EC number	0.4430	0.8692	0.9664	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	497
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-130
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  386 bits (992), Expect = e-130
 Identities = 202/486 (41%), Positives = 281/486 (57%), Gaps = 42/486 (8%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSE 72
             K  Q FG++       + D ++A+EFD+TG YLA GD+GGRV+LFE    +       
Sbjct: 7   ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFE----REK----- 57

Query: 73  LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 132
                    +   EY++ TEFQSHE EFDYLKSLEIEEKIN + W      + F+LSTND
Sbjct: 58  ---------SYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108

Query: 133 KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192
           KTIKLWK+ ++ +K          V +EN L    +            G      E +  
Sbjct: 109 KTIKLWKIYEKNLK----------VVAENNLSDSFHSPMG--------GPLTSTKELLLP 150

Query: 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 252
           +++     + A+  +VY +AH ++INSIS NSD ET +SADDLRINLWNLEI D  FNIV
Sbjct: 151 RLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIV 210

Query: 253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 312
           D+KP NM++LTEVITSAEFHP  CN+  YSSS+G ++L D+RQSALCD+S ++       
Sbjct: 211 DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TID 269

Query: 313 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 372
                FF EI++SISD KF+++G+++LSRDY+ +K+WD+ M   P+ T  +H  L  +L 
Sbjct: 270 GVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELN 329

Query: 373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKN-ENRK 428
           D+Y ND+IFDKFE S SGD  H  +GSYSN   I+   S G    G +   A  + E+ K
Sbjct: 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFK 389

Query: 429 PILQAAPRARRSSLSNLTRGLYRQAHENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACA 487
              +     ++  L N        + +    +     + +L  K+LH +WHP  + +A A
Sbjct: 390 VKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSWHPFEDSVAIA 449

Query: 488 NGNSLF 493
             N+LF
Sbjct: 450 ATNNLF 455

Length = 460

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 75/386 (19%), Positives = 134/386 (34%), Gaps = 116/386 (30%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE 92
             V+ + F   G  LA G   G + +++   G                            
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-----------------------ELLRT 46

Query: 93  FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM- 151
            + H               +  V   A  +G+     ++DKTI+LW +  +  + ++ + 
Sbjct: 47  LKGHT------------GPVRDVAASA--DGTYLASGSSDKTIRLWDL--ETGECVRTLT 90

Query: 152 DHFPFVSS-----ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQ 206
            H  +VSS     +  +L+  +                    +   K+ +V      +C 
Sbjct: 91  GHTSYVSSVAFSPDGRILSSSSR-------------------DKTIKVWDVET---GKCL 128

Query: 207 KVYPHAHDFNINSISNNSDCETFV--SADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264
                  D+ +NS++ + D  TFV  S+ D  I LW+L  + +C          +   T 
Sbjct: 129 TTLRGHTDW-VNSVAFSPD-GTFVASSSQDGTIKLWDLR-TGKCVA-------TLTGHTG 178

Query: 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 324
            + S  F P    LL+ SSS G ++L D+                 +  G+       + 
Sbjct: 179 EVNSVAFSPDGEKLLS-SSSDGTIKLWDLS--------------TGKCLGTLRGHENGVN 223

Query: 325 SISDIKFANDGQHLLS--RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 382
           S++   F+ DG  L S   D   +++WD+R     V T   H +            S+  
Sbjct: 224 SVA---FSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTN------------SVTS 266

Query: 383 KFECSVSGDGLHFATGSYSNLLRIFS 408
               + S DG   A+GS    +RI+ 
Sbjct: 267 ---LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	497
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
PTZ00421	493	coronin; Provisional	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.71
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.68
KOG2139	445	consensus WD40 repeat protein [General function pr	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.65
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
KOG2315	566	consensus Predicted translation initiation factor	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.58
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.52
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.44
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
PRK00178	430	tolB translocation protein TolB; Provisional	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.43
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.37
KOG2315	566	consensus Predicted translation initiation factor	99.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.35
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
KOG2314	698	consensus Translation initiation factor 3, subunit	99.28
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.28
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.26
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
KOG2314	698	consensus Translation initiation factor 3, subunit	99.25
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.2
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.14
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.13
COG4946	668	Uncharacterized protein related to the periplasmic	99.11
COG4946	668	Uncharacterized protein related to the periplasmic	99.09
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.09
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.08
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.97
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.96
PRK04043	419	tolB translocation protein TolB; Provisional	98.94
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.92
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.9
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.87
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.86
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.85
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.82
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.8
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.76
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.66
KOG2695	425	consensus WD40 repeat protein [General function pr	98.65
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.61
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.6
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.55
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.48
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.47
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.46
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.45
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.44
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.39
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.32
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.21
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.18
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.18
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.15
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.15
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.14
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.13
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.1
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.08
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.05
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.05
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.98
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.97
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.97
KOG3621	726	consensus WD40 repeat-containing protein [General	97.93
PRK02888	635	nitrous-oxide reductase; Validated	97.87
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.85
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.78
KOG3621	726	consensus WD40 repeat-containing protein [General	97.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.75
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
PRK02888	635	nitrous-oxide reductase; Validated	97.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.49
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.44
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.35
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.32
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.29
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.26
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.26
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.25
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.23
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.09
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.03
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.93
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.93
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.9
KOG2395	644	consensus Protein involved in vacuole import and d	96.88
KOG2395	644	consensus Protein involved in vacuole import and d	96.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.82
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.6
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.6
PRK13616	591	lipoprotein LpqB; Provisional	96.55
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.51
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.45
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.31
COG3391	381	Uncharacterized conserved protein [Function unknow	96.18
COG3391	381	Uncharacterized conserved protein [Function unknow	96.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.09
PRK13616	591	lipoprotein LpqB; Provisional	96.07
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.04
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.91
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.77
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.72
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.51
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.3
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.24
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.24
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.23
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.22
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.17
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.17
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.09
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.85
KOG2444	238	consensus WD40 repeat protein [General function pr	94.77
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.44
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.41
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.31
KOG2444	238	consensus WD40 repeat protein [General function pr	94.15
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.13
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.11
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.96
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.81
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.75
PHA02713	557	hypothetical protein; Provisional	93.55
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.53
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.04
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.87
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.4
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.37
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.33
PRK13684	334	Ycf48-like protein; Provisional	92.02
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.78
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.73
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.52
COG5167	776	VID27 Protein involved in vacuole import and degra	91.38
PHA02713	557	hypothetical protein; Provisional	91.06
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.81
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	90.75
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.61
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.37
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.15
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.85
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.76
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.29
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.1
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.93
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.62
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.31
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.26
COG5167	776	VID27 Protein involved in vacuole import and degra	88.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.85
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.75
COG4590	733	ABC-type uncharacterized transport system, permeas	87.64
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.47
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.41
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.04
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.69
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.41
PHA03098	534	kelch-like protein; Provisional	85.25
PRK13684	334	Ycf48-like protein; Provisional	85.22
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.88
KOG2247	615	consensus WD40 repeat-containing protein [General	84.88
COG4590	733	ABC-type uncharacterized transport system, permeas	84.26
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.04
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	83.55
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.54
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.53
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.05
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.52
PHA03098	534	kelch-like protein; Provisional	81.63
PRK10115	686	protease 2; Provisional	81.25
KOG2247	615	consensus WD40 repeat-containing protein [General	80.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	80.75

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-52  Score=358.36  Aligned_cols=323  Identities=17%  Similarity=0.292  Sum_probs=283.2

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ..-+|.++|.|++|+|+|.+||+|+.|.++|+||+.+..                       ++.+.++|.         
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-----------------------p~~t~KgH~---------  157 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-----------------------PLFTCKGHK---------  157 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-----------------------cceeecCCc---------
Confidence            344799999999999999999999999999999998863                       478899999         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         ..|.+++|  +|||+.|++|+.||+|++||..+++++.                                       
T Consensus       158 ---~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g---------------------------------------  193 (480)
T KOG0271|consen  158 ---NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIG---------------------------------------  193 (480)
T ss_pred             ---cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCccc---------------------------------------
Confidence               99999999  7999999999999999999999887432                                       


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-----CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                          +. +.+|...|++++|.|     ..+.|+++ .||.|+|||+. .+.++..       +.
T Consensus       194 --------------------~~-l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~-------ls  244 (480)
T KOG0271|consen  194 --------------------RA-LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRT-------LS  244 (480)
T ss_pred             --------------------cc-ccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEE-------ec
Confidence                                11 389999999999964     67789998 99999999999 6666665       78


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe--------
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--------  332 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--------  332 (497)
                      +|+.+|+|+.|--+|  +|++++.|++|++|+...|.++    +.+.+             |...|+.++.+        
T Consensus       245 gHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkG-------------HahwvN~lalsTdy~LRtg  305 (480)
T KOG0271|consen  245 GHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKG-------------HAHWVNHLALSTDYVLRTG  305 (480)
T ss_pred             cCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hhhcc-------------cchheeeeeccchhhhhcc
Confidence            999999999999775  9999999999999999998776    55555             45677777666        


Q ss_pred             ---eCC-------------------------CEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933          333 ---NDG-------------------------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  383 (497)
Q Consensus       333 ---~~g-------------------------~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
                         |.+                         +.|++|+| .++.+|+.....+++.++.+|...+               
T Consensus       306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV---------------  370 (480)
T KOG0271|consen  306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV---------------  370 (480)
T ss_pred             ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe---------------
Confidence               223                         34899876 9999999887677999999999876               


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC
Q 010933          384 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG  460 (497)
Q Consensus       384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~  460 (497)
                      +.+.||||+++||+++.|..|++|+-.+|+.+ .+|++|-.+|+.++++.  |.+.     |++|+.|.. ++|  .+..
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-asfRGHv~~VYqvawsa--DsRL-----lVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-ASFRGHVAAVYQVAWSA--DSRL-----LVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCcchh-hhhhhccceeEEEEecc--CccE-----EEEcCCCceEEEEEeeeee
Confidence            79999999999999999999999999999776 99999999999999998  7777     999999999 999  6677


Q ss_pred             CcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          461 HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       461 ~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                      ...++.+|...|.+++|+|||..+++|+.|. +++|.
T Consensus       443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            7888999999999999999999999999655 66774

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-50  Score=337.09  Aligned_cols=426  Identities=52%  Similarity=0.826  Sum_probs=353.6

Q ss_pred             cccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccc
Q 010933            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYR   88 (497)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (497)
                      ...+.|+|.|+|+..     +...+-|.++.|..+|.+||+|+.+|.|.++.-+....                  .+|.
T Consensus         7 ~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~ey~   63 (433)
T KOG1354|consen    7 NEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GEYN   63 (433)
T ss_pred             chhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------ccee
Confidence            356679999999863     55778999999999999999999999999998654321                  2778


Q ss_pred             ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      +..+++.|++||+|++++++++.|+.++|++..+...++..+.|.+|++|.+.....+. ...+...          .+ 
T Consensus        64 ~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~----------~~-  131 (433)
T KOG1354|consen   64 FQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE----------EG-  131 (433)
T ss_pred             eeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc----------cC-
Confidence            99999999999999999999999999999976677889999999999999997654332 1111100          00 


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCcee
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC  248 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~  248 (497)
                                   +.+....-..+.+-..+......|.+.+..+|+..|++++++.|++.+++++|-.|.+|+++...+.
T Consensus       132 -------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~s  198 (433)
T KOG1354|consen  132 -------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQS  198 (433)
T ss_pred             -------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCc
Confidence                         0001111112233333334456788888889999999999999999999999999999999999999


Q ss_pred             eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      +.++++||..++.....|++..|+|..+++|+..+..|.|++.|+|...++....+.++. ++.+....+|.+....|..
T Consensus       199 FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIsSISD  277 (433)
T KOG1354|consen  199 FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIISSISD  277 (433)
T ss_pred             eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhhhhhc
Confidence            999999999999999999999999998899999999999999999999999998899988 8889999999999999999


Q ss_pred             EEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          329 IKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       329 ~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      +.|+++|+|+++-+.-+|++||+....+++.+++.|......+|++|++++|++...++|+.++.+++||+..+..++|+
T Consensus       278 vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  278 VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence            99999999999998899999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEEEE
Q 010933          409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA  487 (497)
Q Consensus       409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~  487 (497)
                      ...|.....++++...+...-....   .+     .+++++.+.. .+|      ....++...|.+.+|||..+.+|++
T Consensus       358 ~~~gsk~d~tl~asr~~~~~~~~~k---~~-----~V~~~g~r~~~~~~------vd~ldf~kkilh~aWhp~en~ia~a  423 (433)
T KOG1354|consen  358 LARGSKEDFTLEASRKNMKPRKVLK---LR-----LVSSSGKRKRDEIS------VDALDFRKKILHTAWHPKENSIAVA  423 (433)
T ss_pred             CCCCcceeecccccccCCccccccc---ce-----eeecCCCccccccc------cchhhhhhHHHhhccCCccceeeee
Confidence            8888777777776665532222211   11     1344444433 333      5567788899999999999999999


Q ss_pred             eCCceEEEeC
Q 010933          488 NGNSLFFHYA  497 (497)
Q Consensus       488 ~~~~~~i~~~  497 (497)
                      ..+++|||++
T Consensus       424 atnnlyif~~  433 (433)
T KOG1354|consen  424 ATNNLYIFQD  433 (433)
T ss_pred             ecCceEEecC
Confidence            9999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-46  Score=324.07  Aligned_cols=288  Identities=19%  Similarity=0.275  Sum_probs=254.2

Q ss_pred             CCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  103 (497)
Q Consensus        24 ~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  103 (497)
                      ....+++.+.+|..+.||+|++.||||+.+|.+++|+..+..                       .+.+|.||.      
T Consensus       167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~------  217 (459)
T KOG0272|consen  167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT------  217 (459)
T ss_pred             hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc------
Confidence            344556678999999999999999999999999999988764                       378899999      


Q ss_pred             cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                            +.|.++.|+|-.++..+++|+.||++++|++.+....                                     
T Consensus       218 ------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-------------------------------------  254 (459)
T KOG0272|consen  218 ------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-------------------------------------  254 (459)
T ss_pred             ------cceeeEEEccCCCccceeeeccCCceeeeccCCCcch-------------------------------------
Confidence                  8899999986434678999999999999999875422                                     


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                             .. +.+|...|..++|+|+|++|+++ .|.+-++||+++......        .++|
T Consensus       255 -----------------------~~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEGH  302 (459)
T KOG0272|consen  255 -----------------------QD-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEGH  302 (459)
T ss_pred             -----------------------hh-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hccc
Confidence                                   22 27999999999999999999999 999999999995444433        6899


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      +..|.+++|.|+| .++++|+.|..-+|||+|+|+.+    ..+.+             |..+|.+|+|+|+|-.||+| 
T Consensus       303 s~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~L~g-------------H~k~I~~V~fsPNGy~lATgs  364 (459)
T KOG0272|consen  303 SKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MFLAG-------------HIKEILSVAFSPNGYHLATGS  364 (459)
T ss_pred             ccccceeEecCCC-ceeeccCccchhheeecccCcEE----EEecc-------------cccceeeEeECCCceEEeecC
Confidence            9999999999999 99999999999999999999865    45444             67899999999999999998 


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      +|++++|||++. .+++.++.+|.+.|               +.+.|+| .|.+|+|++.|++++||...+...+ +++.
T Consensus       365 ~Dnt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~-ksLa  427 (459)
T KOG0272|consen  365 SDNTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL-KSLA  427 (459)
T ss_pred             CCCcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCcccc-hhhc
Confidence            569999999997 88899999999986               6899998 7899999999999999999988555 9999


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      +|.+.|-++.+++  +++.     +++++.|.. ++|.
T Consensus       428 GHe~kV~s~Dis~--d~~~-----i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 GHEGKVISLDISP--DSQA-----IATSSFDRTIKLWR  458 (459)
T ss_pred             CCccceEEEEecc--CCce-----EEEeccCceeeecc
Confidence            9999999999999  7777     999999999 9993

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-45  Score=313.33  Aligned_cols=284  Identities=16%  Similarity=0.242  Sum_probs=246.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      -+|...|.|++|+|||+.||+|+.||+|++||.+++++                      ....|.+|.           
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------~g~~l~gH~-----------  200 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------IGRALRGHK-----------  200 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------ccccccCcc-----------
Confidence            36999999999999999999999999999999998863                      356789999           


Q ss_pred             ccceeEEEEEe---cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          109 EEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       109 ~~~i~~l~~~~---s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                       ..|++++|.|   .|..++|++++.||.|+|||+..+.+.                                       
T Consensus       201 -K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~---------------------------------------  240 (480)
T KOG0271|consen  201 -KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV---------------------------------------  240 (480)
T ss_pred             -cceeEEeecccccCCCccceecccCCCCEEEEEccCceEE---------------------------------------
Confidence             9999999987   577889999999999999999877643                                       


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                           ..+ .+|+.+|+|+.|-.+| +|++| .|++|++|+.. .+.+...       +.+|..
T Consensus       241 ---------------------~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~-------lkGHah  289 (480)
T KOG0271|consen  241 ---------------------RTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRE-------LKGHAH  289 (480)
T ss_pred             ---------------------EEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHh-------hcccch
Confidence                                 333 7999999999998776 88888 99999999998 5666654       899999


Q ss_pred             CeEEEEEe-----------CCC------------------------CcEEEEEeCCCeEEEEEccCCcccccccceeccc
Q 010933          265 VITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  309 (497)
Q Consensus       265 ~i~~~~~~-----------~~~------------------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  309 (497)
                      .|..++.+           |.+                        ...|++|+.|.++.+|+-...+..   +..    
T Consensus       290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~r----  362 (480)
T KOG0271|consen  290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITR----  362 (480)
T ss_pred             heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhh----
Confidence            99999887           222                        135999999999999997654311   122    


Q ss_pred             ccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933          310 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  388 (497)
Q Consensus       310 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (497)
                               ..+|..-|+.+.||||++|+|+++. ..|++||.++ ++.+.++++|-..+               +.++|
T Consensus       363 ---------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Yqvaw  417 (480)
T KOG0271|consen  363 ---------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQVAW  417 (480)
T ss_pred             ---------hhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEEEe
Confidence                     3457789999999999999999974 9999999997 99999999999876               79999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          389 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       389 s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +.|.++|++|+.|.++++|++++. .+...|.+|.++|..+.++|  +|+.     +++|+.|.. ++|
T Consensus       418 saDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwsp--DG~r-----V~sggkdkv~~lw  478 (480)
T KOG0271|consen  418 SADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSP--DGQR-----VASGGKDKVLRLW  478 (480)
T ss_pred             ccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecC--CCce-----eecCCCceEEEee
Confidence            999999999999999999999987 55589999999999999999  7777     899999998 888

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-42  Score=299.39  Aligned_cols=277  Identities=16%  Similarity=0.219  Sum_probs=244.7

Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      ..+|..+.|  +.++..|++||.+|.+++|+..+....                                          
T Consensus       175 ~rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~------------------------------------------  210 (459)
T KOG0272|consen  175 TRPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLL------------------------------------------  210 (459)
T ss_pred             CCcceeeEe--ecCCCeEEEeecCCceeEeecCCccee------------------------------------------
Confidence            388999999  689999999999999999999876532                                          


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                        .++ .+|...+.++.|+|.  +..+++| .||++++|+++ +...+.       .+.+|...
T Consensus       211 ------------------~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e~~l~-------~l~gH~~R  263 (459)
T KOG0272|consen  211 ------------------QTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QETPLQ-------DLEGHLAR  263 (459)
T ss_pred             ------------------EEE-eccccceeeEEEccCCCccceeeeccCCceeeeccC-CCcchh-------hhhcchhh
Confidence                              223 899999999999996  6789999 99999999999 444544       38899999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      |..++|+|+| ++|++++.|.+-++||++++...    ...             .+|...|.+++|.|||.++++|+ |.
T Consensus       264 Vs~VafHPsG-~~L~TasfD~tWRlWD~~tk~El----L~Q-------------EGHs~~v~~iaf~~DGSL~~tGGlD~  325 (459)
T KOG0272|consen  264 VSRVAFHPSG-KFLGTASFDSTWRLWDLETKSEL----LLQ-------------EGHSKGVFSIAFQPDGSLAATGGLDS  325 (459)
T ss_pred             heeeeecCCC-ceeeecccccchhhcccccchhh----Hhh-------------cccccccceeEecCCCceeeccCccc
Confidence            9999999999 99999999999999999998755    333             35678999999999999999985 58


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      .-+|||+++ ++++..+.+|...+               .+++|+|+|..|||||.|++++|||++.... ..++.+|.+
T Consensus       326 ~~RvWDlRt-gr~im~L~gH~k~I---------------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~n  388 (459)
T KOG0272|consen  326 LGRVWDLRT-GRCIMFLAGHIKEI---------------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSN  388 (459)
T ss_pred             hhheeeccc-CcEEEEecccccce---------------eeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccc
Confidence            889999998 99999999998865               6999999999999999999999999997755 599999999


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEeC
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  497 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~~  497 (497)
                      .|..+.|+|. .+++     |+++++|+. +||  ........+.+|+.+|.+++.+|++..+++++ +..+++|++
T Consensus       389 lVS~Vk~~p~-~g~f-----L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  389 LVSQVKYSPQ-EGYF-----LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             hhhheEeccc-CCeE-----EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            9999999994 7777     999999999 999  34456778899999999999999999999999 667999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-39  Score=289.98  Aligned_cols=374  Identities=17%  Similarity=0.229  Sum_probs=285.6

Q ss_pred             ccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY   89 (497)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (497)
                      +..||||+..+++        |..-|+|+.|+|||.++|+.+.||+|.|||-.++++                       
T Consensus       176 eGPPFKFk~s~r~--------HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-----------------------  224 (603)
T KOG0318|consen  176 EGPPFKFKSSFRE--------HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-----------------------  224 (603)
T ss_pred             eCCCeeeeecccc--------cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-----------------------
Confidence            3458888888886        999999999999999999999999999999988865                       


Q ss_pred             ccccc---ccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933           90 KTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        90 ~~~~~---~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                      +.++.   +|+            +.|++++|  +||++.|++++.|.+++|||+.+.++.....+...-          +
T Consensus       225 vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v----------~  280 (603)
T KOG0318|consen  225 VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV----------E  280 (603)
T ss_pred             EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCch----------h
Confidence            55565   787            99999999  789999999999999999999998876654333221          1


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  245 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  245 (497)
                      ...+.+.+.  ...+.+.++  +|.+.+++.+...   +++++ .+|...|+++..+|+++.|++| .||.|.-|+..+ 
T Consensus       281 dqqvG~lWq--kd~lItVSl--~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-  351 (603)
T KOG0318|consen  281 DQQVGCLWQ--KDHLITVSL--SGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS-  351 (603)
T ss_pred             ceEEEEEEe--CCeEEEEEc--CcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEecCC-
Confidence            223333333  223333333  7788888887653   55555 8999999999999999999999 999999999984 


Q ss_pred             ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          246 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      +..-..      .-+.|...|.+++-+..+  .+++++.|.++++.++........  ..++.              ..+
T Consensus       352 g~~~~~------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~--~~~~l--------------g~Q  407 (603)
T KOG0318|consen  352 GTSDRL------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKS--EVVKL--------------GSQ  407 (603)
T ss_pred             cccccc------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCccccc--ceeec--------------CCC
Confidence            333322      136799999999988764  588899999999999876543211  11111              123


Q ss_pred             ccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          326 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      ..+++..+++.+++...++.|.+..-.   +.+.++...-..                .+++++|+++.+|.|+.|++|+
T Consensus       408 P~~lav~~d~~~avv~~~~~iv~l~~~---~~~~~~~~~y~~----------------s~vAv~~~~~~vaVGG~Dgkvh  468 (603)
T KOG0318|consen  408 PKGLAVLSDGGTAVVACISDIVLLQDQ---TKVSSIPIGYES----------------SAVAVSPDGSEVAVGGQDGKVH  468 (603)
T ss_pred             ceeEEEcCCCCEEEEEecCcEEEEecC---Ccceeecccccc----------------ceEEEcCCCCEEEEecccceEE
Confidence            448888888878777777666665532   122222211111                4799999999999999999999


Q ss_pred             EEEcCCCC-cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC-CcccccccCCCeEEEEEecC
Q 010933          406 IFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG-HHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       406 vw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~-~~~~~~~~~~~i~~l~~~p~  480 (497)
                      ||.+...+ .....+..|.+++..++++|  ++.+     ||+|...++ .+|  ...+ ......-|+.+|++|+|+|+
T Consensus       469 vysl~g~~l~ee~~~~~h~a~iT~vaySp--d~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~  541 (603)
T KOG0318|consen  469 VYSLSGDELKEEAKLLEHRAAITDVAYSP--DGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN  541 (603)
T ss_pred             EEEecCCcccceeeeecccCCceEEEECC--CCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence            99998765 33457889999999999999  7777     999999999 999  2222 33446679999999999999


Q ss_pred             CCEEEEEe-CCceEEEeC
Q 010933          481 TNLIACAN-GNSLFFHYA  497 (497)
Q Consensus       481 ~~~la~~~-~~~~~i~~~  497 (497)
                      ..++|+|+ +.+++||+.
T Consensus       542 n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  542 NKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             ceEEEeccccceEEEEEc
Confidence            99999999 667999973

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-41  Score=279.39  Aligned_cols=438  Identities=44%  Similarity=0.684  Sum_probs=333.5

Q ss_pred             cccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccc
Q 010933           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYK   90 (497)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (497)
                      ...|+++|.|++..........+.|+++.|...|.|||+|...|+|.+|.-+...           +|       +|++.
T Consensus         5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-----------~c-------eykf~   66 (460)
T COG5170           5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-----------GC-------EYKFF   66 (460)
T ss_pred             hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc-----------cc-------chhhh
Confidence            4479999999999888888889999999999999999999999999999865432           34       78999


Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                      ++|++|+.||+|++++++++.|+.+.|+.......++.++.|++|++|.+....++.+..-+...     ++..+-+.++
T Consensus        67 teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~-----~~~~~~~g~~  141 (460)
T COG5170          67 TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD-----SFHSPMGGPL  141 (460)
T ss_pred             hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc-----ccccccCCCc
Confidence            99999999999999999999999999985445567889999999999999877655443332222     0111111000


Q ss_pred             ccCCCCCcccccccccccCcceEEEeec---CCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVG---NSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  247 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~  247 (497)
                      ..                ...+++-.+.   ......+.+.+...|...|++++++.|.+.+++++|-.|.+|+++....
T Consensus       142 ~s----------------~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~  205 (460)
T COG5170         142 TS----------------TKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG  205 (460)
T ss_pred             CC----------------HHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCC
Confidence            00                0011111111   0112234445557899999999999999999999999999999998899


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      ++.+++++|..+......|++..|+|..++.+...+..|.|++-|+|+..++....+.++. ...+....+|.+....|.
T Consensus       206 sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSIS  284 (460)
T COG5170         206 SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSIS  284 (460)
T ss_pred             ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhhc
Confidence            9999999999988888999999999998788999999999999999999888887777776 556666677888889999


Q ss_pred             EEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933          328 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  407 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw  407 (497)
                      .+.|+++|+|+++-+.-++++||.+....++.++..|......+|++|+++++++...+.||.|.+.+++|+..+..-+|
T Consensus       285 D~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         285 DFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             ceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence            99999999999999889999999999899999999999999999999999999999999999999999999999999888


Q ss_pred             EcCCCCcc----eEEEeccCcce---eeeEee-------cCCCcccccccceeEeeccCceecCCCCCcccccccCCCeE
Q 010933          408 SHGVGSAG----GITVEAGKNEN---RKPILQ-------AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL  473 (497)
Q Consensus       408 ~~~~~~~~----~~~~~~~~~~v---~~~~~~-------~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~  473 (497)
                      -..+....    ...+..|..+-   .+..-.       ...+.+      ..+.+.+|..+-   ..-.....+.+.|.
T Consensus       365 p~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~r------s~ss~a~g~~~~---~eD~d~ld~~k~il  435 (460)
T COG5170         365 PTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWR------SVSSSADGFVVA---CEDPDNLDLLKKIL  435 (460)
T ss_pred             ccccCCCCcceEEEecccCCcccccCccccccccccccccccccc------ccccccCcceee---ccCcchhHHHHHHH
Confidence            75543211    12222222111   111100       000111      111111111000   01122345667888


Q ss_pred             EEEEecCCCEEEEEeCCceEEEeC
Q 010933          474 HLAWHPTTNLIACANGNSLFFHYA  497 (497)
Q Consensus       474 ~l~~~p~~~~la~~~~~~~~i~~~  497 (497)
                      +-.|||..+-+|++..++++||++
T Consensus       436 h~sWhp~e~svaiaatnnlfvfs~  459 (460)
T COG5170         436 HRSWHPFEDSVAIAATNNLFVFSK  459 (460)
T ss_pred             hhccCCcccceeeeecCceEEEec
Confidence            999999999999999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.4e-38  Score=262.03  Aligned_cols=286  Identities=12%  Similarity=0.196  Sum_probs=237.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|...|.++.|++|+++|++++.||.+.|||.-+..+                       ..-++-..            
T Consensus        53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----------------------~haipl~s------------   97 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----------------------VHAIPLPS------------   97 (343)
T ss_pred             ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----------------------eeEEecCc------------
Confidence            6999999999999999999999999999999876543                       22233333            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|..++|  +|.+.++++|+.|+...||++...+....                                         
T Consensus        98 ~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~-----------------------------------------  134 (343)
T KOG0286|consen   98 SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGN-----------------------------------------  134 (343)
T ss_pred             eeEEEEEE--CCCCCeEEecCcCceeEEEeccccccccc-----------------------------------------
Confidence            67899999  68899999999999999999975431110                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                    ..+...+.+|.+.+.++.|.+|+ .|+++ .|.+..+||++ .++....       +.+|.+.|.+
T Consensus       135 --------------~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie-~g~~~~~-------f~GH~gDV~s  191 (343)
T KOG0286|consen  135 --------------VRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE-TGQQTQV-------FHGHTGDVMS  191 (343)
T ss_pred             --------------ceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc-cceEEEE-------ecCCcccEEE
Confidence                          11122238999999999999866 66777 99999999999 5555554       7899999999


Q ss_pred             EEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeE
Q 010933          269 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  346 (497)
Q Consensus       269 ~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i  346 (497)
                      ++++| ++ +.+++|+-|+..++||+|.+..+    +.|.+             |...|+++.|.|+|.-+++|+| ++.
T Consensus       192 lsl~p~~~-ntFvSg~cD~~aklWD~R~~~c~----qtF~g-------------hesDINsv~ffP~G~afatGSDD~tc  253 (343)
T KOG0286|consen  192 LSLSPSDG-NTFVSGGCDKSAKLWDVRSGQCV----QTFEG-------------HESDINSVRFFPSGDAFATGSDDATC  253 (343)
T ss_pred             EecCCCCC-CeEEecccccceeeeeccCccee----Eeecc-------------cccccceEEEccCCCeeeecCCCcee
Confidence            99999 66 99999999999999999998655    45544             6789999999999999999976 999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  426 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  426 (497)
                      |+||++. .+.+..+. |..            .+.++++++||..|++|++|..|.++.+||.-.++.. ..|.+|.+.|
T Consensus       254 RlyDlRa-D~~~a~ys-~~~------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v-g~L~GHeNRv  318 (343)
T KOG0286|consen  254 RLYDLRA-DQELAVYS-HDS------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV-GVLAGHENRV  318 (343)
T ss_pred             EEEeecC-CcEEeeec-cCc------------ccCCceeEEEcccccEEEeeecCCceeEeeccccceE-EEeeccCCee
Confidence            9999997 77777776 332            3345589999999999999999999999998887554 8999999999


Q ss_pred             eeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .++..+|  +|..     +++|+=|.. +||
T Consensus       319 Scl~~s~--DG~a-----v~TgSWDs~lriW  342 (343)
T KOG0286|consen  319 SCLGVSP--DGMA-----VATGSWDSTLRIW  342 (343)
T ss_pred             EEEEECC--CCcE-----EEecchhHheeec
Confidence            9999999  6655     999999888 888

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-38  Score=292.37  Aligned_cols=393  Identities=14%  Similarity=0.136  Sum_probs=292.9

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|+.||.-++|+|.|..||+|+.||.+++||+..+                       .+...|+||.           
T Consensus       102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-----------------------~~th~fkG~g-----------  147 (775)
T KOG0319|consen  102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG-----------------------YCTHSFKGHG-----------  147 (775)
T ss_pred             hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC-----------------------EEEEEecCCC-----------
Confidence            359999999999999999999999999999999876                       4578899999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccc--------cCccccCCCCC--
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAE--------KNFMNEHNPPS--  177 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--  177 (497)
                       +.|.++.|+|......|+++..|+++++||+.+... ......+.. .+..+.+..+.        +.++....-..  
T Consensus       148 -GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S-~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~  225 (775)
T KOG0319|consen  148 -GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKS-AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK  225 (775)
T ss_pred             -ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhh-heeeeeeccCCceEEEeccCcEEEEeehhhhh
Confidence             999999998877777789999999999999985432 221111111 12222222111        11111110000  


Q ss_pred             ------------------------cccccccccccCcceEEEeecCCc--------------------------------
Q 010933          178 ------------------------FAHGYHLEWTENMATKIANVGNSV--------------------------------  201 (497)
Q Consensus       178 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  201 (497)
                                              ..++.+++  +.+.+++|+.+...                                
T Consensus       226 ~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ  303 (775)
T KOG0319|consen  226 KLKTLPLYESLESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ  303 (775)
T ss_pred             hhheechhhheeeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence                                    01111111  23345555443210                                


Q ss_pred             ----------------------------------------cceeee---------eeccCCCCCeeEEEeCCCCCEEEEE
Q 010933          202 ----------------------------------------HARCQK---------VYPHAHDFNINSISNNSDCETFVSA  232 (497)
Q Consensus       202 ----------------------------------------~~~~~~---------~~~~~h~~~v~~~~~~~~~~~l~~~  232 (497)
                                                              +..+++         .+..+|+..|.++....+|-+|++|
T Consensus       304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~  383 (775)
T KOG0319|consen  304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG  383 (775)
T ss_pred             eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe
Confidence                                                    000000         1237899999999977788899999


Q ss_pred             -cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc
Q 010933          233 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  311 (497)
Q Consensus       233 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~  311 (497)
                       .|+++++|.++ .+..... ..  ....+|.+.|.+++++..+..+|+++|.|+++++|++...+....        +.
T Consensus       384 sKD~svilWr~~-~~~~~~~-~~--a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~~  451 (775)
T KOG0319|consen  384 SKDKSVILWRLN-NNCSKSL-CV--AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------PI  451 (775)
T ss_pred             cCCceEEEEEec-CCcchhh-hh--hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------cc
Confidence             99999999885 2221111 00  125689999999999988888999999999999999987332211        01


Q ss_pred             ccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933          312 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       312 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                      ....+.+...|...|++++++|+.+++|+|+ |.+.+||++.. .....++.+|...+               +++.|+|
T Consensus       452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGv---------------w~V~Fs~  515 (775)
T KOG0319|consen  452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGV---------------WCVSFSK  515 (775)
T ss_pred             eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccce---------------EEEEecc
Confidence            1111233457889999999999999999996 59999999995 89999999999875               8999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccc
Q 010933          391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN  467 (497)
Q Consensus       391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~  467 (497)
                      ..+.|+|+|.|++|+||.+++.... +++.+|...|....|..  ++..     |++++.||. ++|  ++++-...+-.
T Consensus       516 ~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~--~~~q-----liS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  516 NDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIR--NGKQ-----LISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             ccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeee--CCcE-----EEeccCCCcEEEEeccchhhhhhhhh
Confidence            9999999999999999999998665 99999999999999987  6666     899999999 999  66677778889


Q ss_pred             cCCCeEEEEEecCCCEEEEEeCCc-eEEE
Q 010933          468 LSSKLLHLAWHPTTNLIACANGNS-LFFH  495 (497)
Q Consensus       468 ~~~~i~~l~~~p~~~~la~~~~~~-~~i~  495 (497)
                      |+.+|.+++.+|.+.++++|+.|+ +.+|
T Consensus       588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  588 HNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             ccceeEEEeecCccceeEecCCCeEEEEe
Confidence            999999999999999999999777 5555

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-37  Score=255.41  Aligned_cols=296  Identities=16%  Similarity=0.223  Sum_probs=230.5

Q ss_pred             cccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .-+|++.|+.++..+. .+.|++++.|..+.+|++.....                  .-...++.|.||+         
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs---------   63 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS---------   63 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc---------
Confidence            3469999999999986 57889999999999999976532                  1224577889999         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         ..|..+..  ++|++++++++.|+++++||+.+++.                                         
T Consensus        64 ---H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~-----------------------------------------   97 (315)
T KOG0279|consen   64 ---HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGES-----------------------------------------   97 (315)
T ss_pred             ---eEecceEE--ccCCceEEeccccceEEEEEecCCcE-----------------------------------------
Confidence               88999999  78999999999999999999998762                                         


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                         .+.| .+|...|.+++|++|.+.+++| .|.+|++|+.- +...+.+-      -..+.+.
T Consensus        98 -------------------t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~------~~~~~~W  150 (315)
T KOG0279|consen   98 -------------------TRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH------EDSHREW  150 (315)
T ss_pred             -------------------EEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe------cCCCcCc
Confidence                               2333 8999999999999999999999 99999999998 55444431      2234899


Q ss_pred             eEEEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933          266 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  343 (497)
Q Consensus       266 i~~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~  343 (497)
                      |.++.|+|+. ...|++++.|+.+++||+++-+..    ..             +.+|.+.++.+++||||.++++|+ +
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~-------------~~gh~~~v~t~~vSpDGslcasGgkd  213 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----TT-------------FIGHSGYVNTVTVSPDGSLCASGGKD  213 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----hc-------------cccccccEEEEEECCCCCEEecCCCC
Confidence            9999999983 378999999999999999986543    22             345779999999999999999985 5


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      |.+.+||++. ++.+..+.+...                |.+++|+|+.-.|+.+. +..|+|||++++..+ ..++...
T Consensus       214 g~~~LwdL~~-~k~lysl~a~~~----------------v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v-~~l~~d~  274 (315)
T KOG0279|consen  214 GEAMLWDLNE-GKNLYSLEAFDI----------------VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV-EELKLDG  274 (315)
T ss_pred             ceEEEEEccC-CceeEeccCCCe----------------EeeEEecCCceeEeecc-CCceEEEeccchhhh-hhccccc
Confidence            9999999986 777777765443                26999999976665544 456999999987544 2222110


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      ...     +.                                ........+++|++||..|.+|- ++.+.+|+
T Consensus       275 ~g~-----s~--------------------------------~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  275 IGP-----SS--------------------------------KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             ccc-----cc--------------------------------ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            000     00                                00011446899999999999988 55588886

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.1e-37  Score=248.38  Aligned_cols=289  Identities=15%  Similarity=0.220  Sum_probs=237.1

Q ss_pred             CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933           45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  124 (497)
Q Consensus        45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~  124 (497)
                      -+||+++.|.+||+|...+|                       .+..+++-.+            +.|+.+..  .|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG-----------------------~C~rTiqh~d------------sqVNrLei--Tpdk~   53 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG-----------------------ICSRTIQHPD------------SQVNRLEI--TPDKK   53 (311)
T ss_pred             eEEEeccCcceeeeeehhcC-----------------------eEEEEEecCc------------cceeeEEE--cCCcc
Confidence            48999999999999999988                       4467776555            88999999  68888


Q ss_pred             EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccce
Q 010933          125 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  204 (497)
Q Consensus       125 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (497)
                      .|++++. ..||+||+.++...                                                          
T Consensus        54 ~LAaa~~-qhvRlyD~~S~np~----------------------------------------------------------   74 (311)
T KOG0315|consen   54 DLAAAGN-QHVRLYDLNSNNPN----------------------------------------------------------   74 (311)
T ss_pred             hhhhccC-CeeEEEEccCCCCC----------------------------------------------------------
Confidence            8887776 47999999887621                                                          


Q ss_pred             eeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933          205 CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  283 (497)
Q Consensus       205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  283 (497)
                      ++.+| .+|...|.++.|..+|+.+++| +||+++|||++. ..+..        ...|.++|+++..+|+. ..|++|.
T Consensus        75 Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR--------~~~~~spVn~vvlhpnQ-teLis~d  143 (311)
T KOG0315|consen   75 PVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQR--------NYQHNSPVNTVVLHPNQ-TELISGD  143 (311)
T ss_pred             ceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccch--------hccCCCCcceEEecCCc-ceEEeec
Confidence            44444 8999999999999999999999 999999999993 33332        44577999999999998 8999999


Q ss_pred             CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCC-----Cce
Q 010933          284 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-----STP  357 (497)
Q Consensus       284 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~-----~~~  357 (497)
                      .+|.|++||+.+.....   ..+..             ....|.++...|||.+++++.+ |..++|++-..     -.+
T Consensus       144 qsg~irvWDl~~~~c~~---~liPe-------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P  207 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTH---ELIPE-------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP  207 (311)
T ss_pred             CCCcEEEEEccCCcccc---ccCCC-------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence            99999999998764321   11111             1357999999999999999977 99999998642     245


Q ss_pred             eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc
Q 010933          358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  437 (497)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  437 (497)
                      +..++.|..-+               +.+.+|||+++||++|.|.+++||+.++.-+....+++|...++..+|+.  ++
T Consensus       208 ~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~--dg  270 (311)
T KOG0315|consen  208 VHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA--DG  270 (311)
T ss_pred             hhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc--Cc
Confidence            66778887754               78999999999999999999999999987556688999999999999998  88


Q ss_pred             ccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEe
Q 010933          438 RRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH  478 (497)
Q Consensus       438 ~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~  478 (497)
                      ++     |++|+.|+. ++|  ..++......+|-+.-.+++.+
T Consensus       271 ~Y-----lvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  271 EY-----LVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cE-----EEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            88     999999999 999  4555556667777777676653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=251.85  Aligned_cols=288  Identities=15%  Similarity=0.171  Sum_probs=242.1

Q ss_pred             ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933           87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                      ++..++|+||.            +.|+++.|  ++|.++++++|.||.+.|||..+.......                 
T Consensus        45 ~~~rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~hai-----------------   93 (343)
T KOG0286|consen   45 MRTRRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAI-----------------   93 (343)
T ss_pred             eeeEEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEE-----------------
Confidence            34457899999            99999999  689999999999999999998775532211                 


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  245 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  245 (497)
                                                                  +-....|..++|+|.|+.+++| -|+...||++...
T Consensus        94 --------------------------------------------pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~  129 (343)
T KOG0286|consen   94 --------------------------------------------PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR  129 (343)
T ss_pred             --------------------------------------------ecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence                                                        2335678999999999999999 9999999999833


Q ss_pred             --ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          246 --DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       246 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                        ......    ...+.+|.+.+.++.|-++  ..|++++-|.++-+||+++++.+    ..|.             +|.
T Consensus       130 d~~g~~~v----~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~----~~f~-------------GH~  186 (343)
T KOG0286|consen  130 DAEGNVRV----SRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQT----QVFH-------------GHT  186 (343)
T ss_pred             ccccccee----eeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEE----EEec-------------CCc
Confidence              111111    1248899999999999997  58999999999999999999765    4444             577


Q ss_pred             ccccEEEEee-CCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933          324 ASISDIKFAN-DGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  401 (497)
Q Consensus       324 ~~i~~~~~s~-~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  401 (497)
                      +.|.+++++| +++.+++| .|+..++||++. +.++++|.+|+..+               .++.|.|+|.-+++|++|
T Consensus       187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDI---------------Nsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDI---------------NSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             ccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeeccccccc---------------ceEEEccCCCeeeecCCC
Confidence            9999999999 99999997 579999999997 89999999999865               699999999999999999


Q ss_pred             CcEEEEEcCCCCcceEEE--eccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEE
Q 010933          402 NLLRIFSHGVGSAGGITV--EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLA  476 (497)
Q Consensus       402 g~i~vw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~  476 (497)
                      ++.++||++..+++ ..+  ..-..+|++++|+.  .|++     |..|..|.. .+|  ..++....+.+|+..|++|.
T Consensus       251 ~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~--SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~  322 (343)
T KOG0286|consen  251 ATCRLYDLRADQEL-AVYSHDSIICGITSVAFSK--SGRL-----LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG  322 (343)
T ss_pred             ceeEEEeecCCcEE-eeeccCcccCCceeEEEcc--cccE-----EEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence            99999999987665 333  33456899999998  5666     888888888 999  56677788999999999999


Q ss_pred             EecCCCEEEEEe-CCceEEEe
Q 010933          477 WHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       477 ~~p~~~~la~~~-~~~~~i~~  496 (497)
                      .+|||.-+++|+ +..++||+
T Consensus       323 ~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  323 VSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ECCCCcEEEecchhHheeecC
Confidence            999999999999 66799995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-37  Score=289.88  Aligned_cols=264  Identities=21%  Similarity=0.313  Sum_probs=218.1

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccch--hhhhhhccc----C--CCCCCcccccccccccCcccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISR--SELEKQMDF----T--STSHPEYRYKTEFQSHEPEFDYL  103 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~--~~~~~~~~~~~~~~~h~~~~~~~  103 (497)
                      ...++|..|++|+.+||.|-.|..|++|.+...+...+.  ..+......    .  -..........++-||+      
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------  451 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------  451 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence            468899999999999999999999999999854321111  111111000    0  00011122334577888      


Q ss_pred             cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                            ++|+.+.|  +|+.++|+++|+|+++|+|.+.+..                                       
T Consensus       452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s---------------------------------------  484 (707)
T KOG0263|consen  452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWS---------------------------------------  484 (707)
T ss_pred             ------Cceeeeee--cccccceeeccCCcceeeeecccce---------------------------------------
Confidence                  99999999  7899999999999999999998765                                       


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                           ++-.| .+|..+|+++.|+|.|-++|++ .|++.++|... ..+...+       +.+|
T Consensus       485 ---------------------~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fagh  534 (707)
T KOG0263|consen  485 ---------------------CLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FAGH  534 (707)
T ss_pred             ---------------------eEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hccc
Confidence                                 33444 7999999999999999999999 99999999988 4455554       7899


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      -+.|.|++|+|+. +++++||.|.++|+||+.+|..+    ++|.+             |.++|.+++|||+|++|++|+
T Consensus       535 lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----RiF~G-------------H~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  535 LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----RIFTG-------------HKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             ccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----EEecC-------------CCCceEEEEEcCCCceEeecc
Confidence            9999999999999 99999999999999999999765    66655             679999999999999999996


Q ss_pred             c-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          343 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       343 ~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      + +.|.+||+.. ++++..+.+|.+.+               .++.|+.||..||+||.|++|++||+..-
T Consensus       597 ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 EDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            5 9999999996 89999999997754               79999999999999999999999998764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-37  Score=251.84  Aligned_cols=245  Identities=19%  Similarity=0.322  Sum_probs=205.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|...|+.++.++||++.++++.|+.+++||+.+++.                       ...|.||.            
T Consensus        61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-----------------------t~~f~GH~------------  105 (315)
T KOG0279|consen   61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-----------------------TRRFVGHT------------  105 (315)
T ss_pred             ccceEecceEEccCCceEEeccccceEEEEEecCCcE-----------------------EEEEEecC------------
Confidence            6999999999999999999999999999999998743                       67799999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  ++|++.+++|+.|++|++|++.+.....+.                                        
T Consensus       106 ~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~----------------------------------------  143 (315)
T KOG0279|consen  106 KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIH----------------------------------------  143 (315)
T ss_pred             CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEe----------------------------------------
Confidence            88999999  789999999999999999998764422110                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                          -..|...|.++.|+|+  ...|+++ .|++|++||++ +-+..+       .+.+|+..+
T Consensus       144 --------------------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~-------~~~gh~~~v  195 (315)
T KOG0279|consen  144 --------------------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT-------TFIGHSGYV  195 (315)
T ss_pred             --------------------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh-------ccccccccE
Confidence                                0234789999999997  6788888 99999999999 444444       378999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  346 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i  346 (497)
                      +.++++||| .++++|+.||.+.+||++.++.+    ..++.              ...|.+++|+|+.-+|+.+.+..|
T Consensus       196 ~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL~~at~~sI  256 (315)
T KOG0279|consen  196 NTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWLCAATATSI  256 (315)
T ss_pred             EEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeEeeccCCce
Confidence            999999999 99999999999999999998754    33333              478999999999988888888889


Q ss_pred             EEEecCCCCceeeeeeeccccc-----ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLR-----PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      +|||+.. +.++..++......     ...|           .+++|++||+.|++|-.|+.|++|.+.
T Consensus       257 kIwdl~~-~~~v~~l~~d~~g~s~~~~~~~c-----------lslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  257 KIWDLES-KAVVEELKLDGIGPSSKAGDPIC-----------LSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEeccc-hhhhhhccccccccccccCCcEE-----------EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            9999986 77777665332211     1222           689999999999999999999999975

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=245.27  Aligned_cols=270  Identities=17%  Similarity=0.265  Sum_probs=225.1

Q ss_pred             ccC-CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           29 LQD-VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h-~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ++| .+.|+.+.+.|++++||+++. -.||+||+.+++.                     .++.++.+|.          
T Consensus        36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---------------------~Pv~t~e~h~----------   83 (311)
T KOG0315|consen   36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---------------------NPVATFEGHT----------   83 (311)
T ss_pred             EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---------------------CceeEEeccC----------
Confidence            455 469999999999999999986 4799999998754                     4688999999          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..|.++.|  ..+|+++++||+||+++|||++.-.+.                                         
T Consensus        84 --kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~q-----------------------------------------  118 (311)
T KOG0315|consen   84 --KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQ-----------------------------------------  118 (311)
T ss_pred             --CceEEEEE--eecCeEEEecCCCceEEEEeccCcccc-----------------------------------------
Confidence              88999999  689999999999999999999874432                                         


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                         +.  ..|.++|+++..+|+...|++| .+|.|++||+. ...+....      .+.....|
T Consensus       119 -------------------R~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~~~~i  170 (311)
T KOG0315|consen  119 -------------------RN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPEDDTSI  170 (311)
T ss_pred             -------------------hh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCCCcce
Confidence                               22  3677899999999999999999 99999999998 44343321      34556889


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~  345 (497)
                      .++...|+| .+++.+...|+.++|++-......    .+       .+...+..|.+.+..+.+|||+++||++ +|.+
T Consensus       171 ~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s----~l-------~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  171 QSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS----EL-------EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             eeEEEcCCC-cEEEEecCCccEEEEEccCCCccc----cc-------eEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence            999999999 999999999999999998743321    11       1222367788999999999999999997 5699


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      ++||+.+..-+....+++|+..+               ++++||.||+||++|+.|+.+++|++..++.+ ....+|..+
T Consensus       239 v~iwn~~~~~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v-~qy~gh~K~  302 (311)
T KOG0315|consen  239 VKIWNTDDFFKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAGKEV-RQYQGHHKA  302 (311)
T ss_pred             EEEEecCCceeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccCcee-eecCCcccc
Confidence            99999986447777889998876               89999999999999999999999999998665 778888877


Q ss_pred             eeeeEe
Q 010933          426 NRKPIL  431 (497)
Q Consensus       426 v~~~~~  431 (497)
                      ..+++.
T Consensus       303 ~vc~~l  308 (311)
T KOG0315|consen  303 AVCVAL  308 (311)
T ss_pred             cEEEEe
Confidence            666654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.1e-36  Score=251.50  Aligned_cols=283  Identities=18%  Similarity=0.302  Sum_probs=227.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|++.|+++.|+|+|.+||+|+.|..|.+|+.....                      +....+++|.            
T Consensus        45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc----------------------eN~~~lkgHs------------   90 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC----------------------ENFWVLKGHS------------   90 (338)
T ss_pred             CCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------cceeeecccc------------
Confidence            689999999999999999999999999999976532                      4466678999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|..+.|  .+|+..+++++.|.+++.||+++|+...                                          
T Consensus        91 gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~r------------------------------------------  126 (338)
T KOG0265|consen   91 GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIR------------------------------------------  126 (338)
T ss_pred             ceeEeeee--ccCCCEEEEecCCceEEEEecccceeee------------------------------------------
Confidence            99999999  7899999999999999999999988443                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        .+ ++|..-|+++.-+.-|..|+. + .|+++++||++ .+..+++        ....-.++
T Consensus       127 ------------------k~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t--------~~~kyqlt  178 (338)
T KOG0265|consen  127 ------------------KH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKT--------FENKYQLT  178 (338)
T ss_pred             ------------------hh-ccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhc--------cccceeEE
Confidence                              22 789999999987777776665 6 99999999999 5656554        23456789


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      ++.|..++ ..+.+|+-|+.|++||++.....    .++.+             |...|+.+..+|+|.++.+-+ |..+
T Consensus       179 Av~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----~~lsG-------------h~DtIt~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  179 AVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----YTLSG-------------HADTITGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             EEEecccc-cceeeccccCceeeeccccCcce----EEeec-------------ccCceeeEEeccCCCccccccccceE
Confidence            99999998 89999999999999999987654    44444             678999999999999999965 5999


Q ss_pred             EEEecCC---CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933          347 KLWDIRM---DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       347 ~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      ++||++.   ..+++..+.+|.......           ...++|+|++..+.+|+.|..+++||.... .....+    
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfekn-----------lL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lykl----  304 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKN-----------LLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYKL----  304 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhh-----------cceeeccCCCCccccccccceEEEeecccc-cEEEEc----
Confidence            9999974   134577777776543221           157999999999999999999999998754 222333    


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-CceEE
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF  494 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i  494 (497)
                                                                .+|...|++++|+|..++|.+++. ..+|+
T Consensus       305 ------------------------------------------pGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  305 ------------------------------------------PGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ------------------------------------------CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence                                                      345557777888888888777764 34553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-37  Score=265.10  Aligned_cols=287  Identities=16%  Similarity=0.297  Sum_probs=239.8

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|++.|.-+.||++|+|||+++.|.+..||++....                    .++..+++.+|.            
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~------------  269 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS------------  269 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc------------
Confidence            399999999999999999999999999999986543                    256788899999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+|..+.|  +||.++|++|+.|..+++||+.+|.....                                         
T Consensus       270 ~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~-----------------------------------------  306 (519)
T KOG0293|consen  270 QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHL-----------------------------------------  306 (519)
T ss_pred             CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhh-----------------------------------------
Confidence            89999999  78999999999999999999999885432                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~  267 (497)
                                         +..+|...+.+++|.|||..+++| .|+.+..||.+ +.. ..-       +++- ...|.
T Consensus       307 -------------------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~-~~~-------W~gvr~~~v~  358 (519)
T KOG0293|consen  307 -------------------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNI-LGN-------WEGVRDPKVH  358 (519)
T ss_pred             -------------------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cch-hhc-------ccccccceeE
Confidence                               224566789999999999999999 99999999998 332 222       3332 25689


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i  346 (497)
                      +++..+|| +.+++.+.|..|++|+..+....    .....              ..+|++.++|.+|+++++. .+..+
T Consensus       359 dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  359 DLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             EEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEcccCee
Confidence            99999999 89999999999999998875432    23333              2579999999999999887 66999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      ++||++ +.+.++.+.||.....             +..-+|.. +..++++||+|+.|+||+..++.. ...+.||...
T Consensus       420 ~LWDl~-e~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl-l~~LsGHs~~  484 (519)
T KOG0293|consen  420 HLWDLE-ENKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL-LAVLSGHSKT  484 (519)
T ss_pred             EEeecc-hhhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEEccCCce-eEeecCCcce
Confidence            999999 4899999999986431             13556654 558999999999999999999855 4999999999


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eecCCC
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS  459 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~  459 (497)
                      |+++++.|. +..+     ||++++||. +||..+
T Consensus       485 vNcVswNP~-~p~m-----~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  485 VNCVSWNPA-DPEM-----FASASDDGTIRIWGPS  513 (519)
T ss_pred             eeEEecCCC-CHHH-----hhccCCCCeEEEecCC
Confidence            999999997 6666     999999999 999544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-35  Score=271.99  Aligned_cols=379  Identities=16%  Similarity=0.186  Sum_probs=286.0

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|+++.|+.|.++|++|+.|-+++||+++..+.                     .....+.+|.           
T Consensus       142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---------------------~~~~~l~gHk-----------  189 (893)
T KOG0291|consen  142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---------------------LFTYALNGHK-----------  189 (893)
T ss_pred             cCCccceeEEEeccCCceEEeccccceEEEEEeccccc---------------------cceEeccCCC-----------
Confidence            36889999999999999999999999999999987542                     2345678999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCch--heeccc---------cCCCCC-c-cccc-------cccccc-c
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIK---------EMDHFP-F-VSSE-------NTLLAE-K  167 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~--~~~~~~---------~~~~~~-~-~~~~-------~~~~~~-~  167 (497)
                       +.|-..-|  ..+...+++.+.||.+.+|.....  ....-.         ...... + ...+       .++..+ .
T Consensus       190 -d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~  266 (893)
T KOG0291|consen  190 -DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSS  266 (893)
T ss_pred             -cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccc
Confidence             88999888  678888999999999999987621  100000         000000 0 0000       011111 1


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccC
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEIS  245 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~  245 (497)
                      .+.+..+.+...+++.+-  ..|...++.+..   ..++..+ .-...+|..++|+..|.+|+.|  .=|.+.+|+.+..
T Consensus       267 kvtaa~fH~~t~~lvvgF--ssG~f~LyelP~---f~lih~L-Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  267 KVTAAAFHKGTNLLVVGF--SSGEFGLYELPD---FNLIHSL-SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ceeeeeccCCceEEEEEe--cCCeeEEEecCC---ceEEEEe-ecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            122222222233333332  255666777663   2344443 4445789999999999999997  5689999999944


Q ss_pred             ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          246 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      .-.++        .++|...+.+++++||| .++|+|+.||.|+|||.+++-..    .+|             .+|+..
T Consensus       341 sYVlK--------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----vTF-------------teHts~  394 (893)
T KOG0291|consen  341 SYVLK--------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----VTF-------------TEHTSG  394 (893)
T ss_pred             ceeee--------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE----EEe-------------ccCCCc
Confidence            33333        68999999999999999 99999999999999999987554    444             447789


Q ss_pred             ccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-c
Q 010933          326 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-L  403 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~  403 (497)
                      ++.+.|+..|+.+++++ ||+|+.||+.. .+..+++........              .+++..|.|..+++|+.|. .
T Consensus       395 Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Qf--------------scvavD~sGelV~AG~~d~F~  459 (893)
T KOG0291|consen  395 VTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQF--------------SCVAVDPSGELVCAGAQDSFE  459 (893)
T ss_pred             eEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCceee--------------eEEEEcCCCCEEEeeccceEE
Confidence            99999999999999986 69999999986 888888887665321              5799999999999999886 6


Q ss_pred             EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC--CcccccccCCCeEEEEEecC
Q 010933          404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--HHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~--~~~~~~~~~~~i~~l~~~p~  480 (497)
                      |+||++++|+. .-.+.+|.+||.+++|+|  .+..     |++|+-|.. ++|..-.  ...+...+...++.++|+|+
T Consensus       460 IfvWS~qTGql-lDiLsGHEgPVs~l~f~~--~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  460 IFVWSVQTGQL-LDILSGHEGPVSGLSFSP--DGSL-----LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD  531 (893)
T ss_pred             EEEEEeecCee-eehhcCCCCcceeeEEcc--ccCe-----EEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence            99999999955 489999999999999999  4445     999999999 9993222  25566778889999999999


Q ss_pred             CCEEEEEe-CCceEEEeC
Q 010933          481 TNLIACAN-GNSLFFHYA  497 (497)
Q Consensus       481 ~~~la~~~-~~~~~i~~~  497 (497)
                      |+-||+++ ++.|.||++
T Consensus       532 G~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDI  549 (893)
T ss_pred             CCeEEEEEecceEEEEEh
Confidence            99999999 557999973

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-35  Score=260.32  Aligned_cols=329  Identities=16%  Similarity=0.258  Sum_probs=259.8

Q ss_pred             ccCCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCc-cccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGK-NHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      +.|..+|.+++|+|-.. .+|+|+.|-..++|++...- ...                    ....|+ |.. -...++.
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~--------------------~q~~lr-h~~-~~~~~s~  232 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS--------------------TQLVLR-HCI-REGGKSV  232 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccc--------------------hhhhhh-hhh-hhhcccC
Confidence            45899999999999665 89999999999999986411 000                    000010 000 0011222


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      .....|++++|  +.+|..|++|+.||.+++|+........                                       
T Consensus       233 ~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t---------------------------------------  271 (524)
T KOG0273|consen  233 PSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST---------------------------------------  271 (524)
T ss_pred             CccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh---------------------------------------
Confidence            23367999999  7899999999999999999987655322                                       


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                             +..|.++|.++.|+..|++|+++ .|+++.+||.. .+...+.       +.-|+.+
T Consensus       272 -----------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-~g~~~q~-------f~~~s~~  320 (524)
T KOG0273|consen  272 -----------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-TGTVKQQ-------FEFHSAP  320 (524)
T ss_pred             -----------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEecc-CceEEEe-------eeeccCC
Confidence                                   27899999999999999999999 99999999998 4444443       5667777


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~  344 (497)
                      -..+.|-.+  ..|++++.|+.|+|+-+...+..    +.             +.+|.+.|+++.|+|.|.+|++++| +
T Consensus       321 ~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~----~t-------------~~GH~g~V~alk~n~tg~LLaS~SdD~  381 (524)
T KOG0273|consen  321 ALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV----KT-------------FIGHHGEVNALKWNPTGSLLASCSDDG  381 (524)
T ss_pred             ccceEEecC--ceEeecCCCceEEEEEecCCCcc----ee-------------eecccCceEEEEECCCCceEEEecCCC
Confidence            788899877  57999999999999998765433    33             3457799999999999999999965 9


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC---------CEEEEEeCCCcEEEEEcCCCCcc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      +++||+... ......+.+|...+               ..+.|+|+|         ..|++++.|++|++||+..+..+
T Consensus       382 TlkiWs~~~-~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i  445 (524)
T KOG0273|consen  382 TLKIWSMGQ-SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI  445 (524)
T ss_pred             eeEeeecCC-Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence            999999986 78888999998754               589999864         47999999999999999999665


Q ss_pred             eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC-CCcccccccCCCeEEEEEecCCCEEEEEeCC-ce
Q 010933          416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGN-SL  492 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~  492 (497)
                       ..|-.|..||.+++|+|  ++++     +|+|+.||. ++|... ..+.........|..|.|+.+|+.|.++-.+ .+
T Consensus       446 -~~f~kH~~pVysvafS~--~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  446 -HTLMKHQEPVYSVAFSP--NGRY-----LASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             -EeeccCCCceEEEEecC--CCcE-----EEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence             88999999999999999  8888     999999999 999333 3344455666779999999999988766644 45


Q ss_pred             EE
Q 010933          493 FF  494 (497)
Q Consensus       493 ~i  494 (497)
                      ++
T Consensus       518 cv  519 (524)
T KOG0273|consen  518 CV  519 (524)
T ss_pred             eE
Confidence            54

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-34  Score=256.94  Aligned_cols=367  Identities=14%  Similarity=0.195  Sum_probs=257.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|..+++-..|||.|-|+|+|...|.|||||....+.                     .+..+++.-.            
T Consensus        57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---------------------iLKnef~v~a------------  103 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---------------------ILKNEFQVLA------------  103 (603)
T ss_pred             cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---------------------eeeeeeeecc------------
Confidence            5899999999999999999999999999999876421                     2334455555            


Q ss_pred             cceeEEEEEecCCCCEEEEEeC--C--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc-cccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN--D--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-GYHL  184 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~--d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  184 (497)
                      ++|.+++|  +.+++.+++.++  +  |.+.+||.-+..  -..             ..++..+..+.+-+...+ ++++
T Consensus       104 G~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG~Sv--Gei-------------~GhSr~ins~~~KpsRPfRi~T~  166 (603)
T KOG0318|consen  104 GPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSGNSV--GEI-------------TGHSRRINSVDFKPSRPFRIATG  166 (603)
T ss_pred             ccccccee--CCCCcEEEEEecCccceeEEEEecCCCcc--cee-------------eccceeEeeeeccCCCceEEEec
Confidence            89999999  789999888763  3  456666653311  100             011112222222222221 2333


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                      +  +++.+.+++-..   .+...++ ..|..-|+++.|+|||+.+++. .||+|.+||-.++.+...+     ..-.+|+
T Consensus       167 s--dDn~v~ffeGPP---FKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l-----~~~~aHk  235 (603)
T KOG0318|consen  167 S--DDNTVAFFEGPP---FKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL-----EDSDAHK  235 (603)
T ss_pred             c--CCCeEEEeeCCC---eeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe-----cCCCCcc
Confidence            3  367777776542   1222333 7899999999999999999998 9999999998855444432     1245899


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  343 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  343 (497)
                      +.|.+++|+||+ ..|++++.|..++|||+.+.++.    +.+.. ...         -......+.|- ++.++...-.
T Consensus       236 GsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv----~t~~~-~~~---------v~dqqvG~lWq-kd~lItVSl~  299 (603)
T KOG0318|consen  236 GSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLV----STWPM-GST---------VEDQQVGCLWQ-KDHLITVSLS  299 (603)
T ss_pred             ccEEEEEECCCC-ceEEEecCCceEEEEEeeccceE----EEeec-CCc---------hhceEEEEEEe-CCeEEEEEcC
Confidence            999999999999 99999999999999999998765    44443 100         01223444565 4555555566


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      |.|.+++... ..++..+.+|...+               +++..+||+++|++|+.||.|.-|+..++..-...-++|.
T Consensus       300 G~in~ln~~d-~~~~~~i~GHnK~I---------------TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~  363 (603)
T KOG0318|consen  300 GTINYLNPSD-PSVLKVISGHNKSI---------------TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT  363 (603)
T ss_pred             cEEEEecccC-CChhheecccccce---------------eEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence            9999999986 66999999999865               7999999999999999999999999877532211111121


Q ss_pred             c-------------------------------------------------------------------------------
Q 010933          424 N-------------------------------------------------------------------------------  424 (497)
Q Consensus       424 ~-------------------------------------------------------------------------------  424 (497)
                      .                                                                               
T Consensus       364 nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~  443 (603)
T KOG0318|consen  364 NQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG  443 (603)
T ss_pred             ceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccc
Confidence            1                                                                               


Q ss_pred             -ceeeeEeecCCCcccccccceeEeeccCc-eecCCC----CCcccccccCCCeEEEEEecCCCEEEEEeC-CceEEEe
Q 010933          425 -ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS----GHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY  496 (497)
Q Consensus       425 -~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~----~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i~~  496 (497)
                       ...+++++|  ++..     +|.|+.|++ +++...    ........|..+|+++++|||+.+||++.. ..+.+|.
T Consensus       444 y~~s~vAv~~--~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd  515 (603)
T KOG0318|consen  444 YESSAVAVSP--DGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD  515 (603)
T ss_pred             cccceEEEcC--CCCE-----EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence             122333444  3444     888999999 888222    223357789999999999999999999994 4477775

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-35  Score=261.46  Aligned_cols=280  Identities=17%  Similarity=0.305  Sum_probs=231.0

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ....|++++|+.+|..||+|+.||.++||+..+.                        .+.+|..|.            +
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~------------------------l~~tl~~Hk------------g  277 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN------------------------LISTLGQHK------------G  277 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecCch------------------------hhhhhhccC------------C
Confidence            4578999999999999999999999999998764                        367788899            9


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      +|.++.|  +.+|.+|++++.|+++.+||..++.++....+...+             .+...+..+..+..+.   .++
T Consensus       278 PI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------~lDVdW~~~~~F~ts~---td~  339 (524)
T KOG0273|consen  278 PIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------ALDVDWQSNDEFATSS---TDG  339 (524)
T ss_pred             ceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-------------ccceEEecCceEeecC---CCc
Confidence            9999999  789999999999999999999988876654333221             1222222222222222   377


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                      .++++.+..   ..|+.++ .+|.+.|.++.|+|.|.+|+++ +|++++||++. ...+..       .+..|+..|+.+
T Consensus       340 ~i~V~kv~~---~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~-------~l~~Hskei~t~  407 (524)
T KOG0273|consen  340 CIHVCKVGE---DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVH-------DLQAHSKEIYTI  407 (524)
T ss_pred             eEEEEEecC---CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchh-------hhhhhccceeeE
Confidence            899998884   4688887 7899999999999999999999 99999999987 444444       378999999999


Q ss_pred             EEeCCCC--------cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          270 EFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       270 ~~~~~~~--------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      .|+|+|+        ..+++++.|+.|++||+..+..+    ..|..             |..+|++++|+|+|+|+|+|
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~k-------------H~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMK-------------HQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----Eeecc-------------CCCceEEEEecCCCcEEEec
Confidence            9999753        46999999999999999998765    44444             56899999999999999999


Q ss_pred             e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          342 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       342 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      + ||.|.+|+.+. ++.++.+.+....                ..++|+.+|.+|..+-.|+.+++.|++
T Consensus       471 s~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  471 SLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence            6 59999999997 8999888876652                589999999999999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.1e-37  Score=265.15  Aligned_cols=278  Identities=20%  Similarity=0.318  Sum_probs=239.7

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ..+|..+.|.|+|+.|++|+..|.+.+|+..+                       +.+...+++|+            .+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHD------------s~  140 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHD------------SP  140 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhc------------cc
Confidence            45899999999999999999999999999754                       35566788999            99


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |.++.|  ++++.++++|..+|.|++|+..-..++.+                                           
T Consensus       141 Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~-------------------------------------------  175 (464)
T KOG0284|consen  141 VRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKII-------------------------------------------  175 (464)
T ss_pred             ceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHh-------------------------------------------
Confidence            999999  68999999999999999999876553332                                           


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        ...|...|.+++|+|+...|+++ +||+|+|||.....+...        +.+|.-.|.+++
T Consensus       176 ------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--------L~GHgwdVksvd  229 (464)
T KOG0284|consen  176 ------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--------LRGHGWDVKSVD  229 (464)
T ss_pred             ------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--------eccCCCCcceec
Confidence                              13555899999999999999999 999999999884443322        689999999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw  349 (497)
                      |+|.. .++++++.|..|++||.+++..+    ..             +.+|+..|..+.|+|++++|++++ |..++++
T Consensus       230 WHP~k-gLiasgskDnlVKlWDprSg~cl----~t-------------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~  291 (464)
T KOG0284|consen  230 WHPTK-GLIASGSKDNLVKLWDPRSGSCL----AT-------------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF  291 (464)
T ss_pred             cCCcc-ceeEEccCCceeEeecCCCcchh----hh-------------hhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence            99998 99999999999999999999765    22             234678899999999999999985 5999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  428 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  428 (497)
                      |+++ .+.+.++++|+..+               +++.|+| ...++.+|+.||.|..|.+...+.+...-.+|...|++
T Consensus       292 DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws  355 (464)
T KOG0284|consen  292 DIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS  355 (464)
T ss_pred             ehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence            9996 88999999999865               7999999 45688899999999999998666666777899999999


Q ss_pred             eEeecCCCcccccccceeEeeccCc-eec
Q 010933          429 PILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       429 ~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +++.|  -|.+     ||+|+.|.. +.|
T Consensus       356 l~~hP--lGhi-----l~tgsnd~t~rfw  377 (464)
T KOG0284|consen  356 LAYHP--LGHI-----LATGSNDRTVRFW  377 (464)
T ss_pred             eeccc--ccee-----EeecCCCcceeee
Confidence            99999  4555     999999999 999

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-36  Score=240.32  Aligned_cols=281  Identities=20%  Similarity=0.343  Sum_probs=232.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.++|.++.|+-||+|.++++.|.+|++|+...+                       .+++++.+|.            
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-----------------------~liktYsghG------------   59 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-----------------------ALIKTYSGHG------------   59 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-----------------------ceeeeecCCC------------
Confidence            37899999999999999999999999999998776                       4589999998            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|..++-  +.|+..|++++.|+.+.+||+.+|++.+                                          
T Consensus        60 ~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~R------------------------------------------   95 (307)
T KOG0316|consen   60 HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDR------------------------------------------   95 (307)
T ss_pred             ceeeeccc--cccccccccCCCCceEEEEEcccCeeee------------------------------------------
Confidence            67999998  5788999999999999999999988543                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-ceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        .+ .+|...|+.++|+.+...+++| .|..+++||.++. .+++++       +....+.|.
T Consensus        96 ------------------r~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~D~V~  149 (307)
T KOG0316|consen   96 ------------------RF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAKDGVS  149 (307)
T ss_pred             ------------------ec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhcCcee
Confidence                              22 8999999999999999999999 9999999999832 234444       666778899


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      ++....   ..|++|+.||++|.||+|.|++.    ..+-+               .+|++++|+++++..++++ ++.+
T Consensus       150 Si~v~~---heIvaGS~DGtvRtydiR~G~l~----sDy~g---------------~pit~vs~s~d~nc~La~~l~stl  207 (307)
T KOG0316|consen  150 SIDVAE---HEIVAGSVDGTVRTYDIRKGTLS----SDYFG---------------HPITSVSFSKDGNCSLASSLDSTL  207 (307)
T ss_pred             EEEecc---cEEEeeccCCcEEEEEeecceee----hhhcC---------------CcceeEEecCCCCEEEEeecccee
Confidence            998875   57999999999999999998764    22223               5799999999999988885 5999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  426 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  426 (497)
                      ++.|-.+ +++++.+++|...-.+             ...++.....++++|++||.+++||+.....+ ..+..+... 
T Consensus       208 rLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-sk~~~~~~v-  271 (307)
T KOG0316|consen  208 RLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-SKLSVVSTV-  271 (307)
T ss_pred             eecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEeccceee-eeeccCCce-
Confidence            9999987 9999999999875322             46788888899999999999999999876332 222222111 


Q ss_pred             eeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEeC
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  497 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~~  497 (497)
                                                                  .|+++++||....+.++...+.+.|.+
T Consensus       272 --------------------------------------------~v~dl~~hp~~~~f~~A~~~~~~~~~~  298 (307)
T KOG0316|consen  272 --------------------------------------------IVTDLSCHPTMDDFITATGHGDLFWYQ  298 (307)
T ss_pred             --------------------------------------------eEEeeecccCccceeEecCCceeceee
Confidence                                                        367888899888888888888777753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.9e-36  Score=253.56  Aligned_cols=253  Identities=19%  Similarity=0.322  Sum_probs=220.3

Q ss_pred             ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT   91 (497)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (497)
                      .+||...+..        +|.+.|.|+++.|..+++++|+.|++|+|||+.++++                       ..
T Consensus       139 apwKl~rVi~--------gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------------kl  187 (460)
T KOG0285|consen  139 APWKLYRVIS--------GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------------KL  187 (460)
T ss_pred             Ccceehhhhh--------hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------------EE
Confidence            3677777654        4999999999999999999999999999999999865                       78


Q ss_pred             cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933           92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  171 (497)
Q Consensus        92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (497)
                      ++.||-            ..|..+++  ++--.|+++++.|+.|+.||++..+.++.                       
T Consensus       188 tltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~-----------------------  230 (460)
T KOG0285|consen  188 TLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRH-----------------------  230 (460)
T ss_pred             eecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhhhHHH-----------------------
Confidence            899999            88999999  56778999999999999999998875442                       


Q ss_pred             cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933          172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  250 (497)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  250 (497)
                                                           | .+|-+.|++++.+|.-..|++| .|..+++||++ .+..+.
T Consensus       231 -------------------------------------Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~  271 (460)
T KOG0285|consen  231 -------------------------------------Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVH  271 (460)
T ss_pred             -------------------------------------h-ccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEE
Confidence                                                 3 7999999999999999999999 99999999999 555555


Q ss_pred             EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933          251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      +       +.+|..+|..+.+.|.. ..+++||.|++|++||++.|+..    ..+             ..|...+.+++
T Consensus       272 ~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~hkksvral~  326 (460)
T KOG0285|consen  272 V-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THHKKSVRALC  326 (460)
T ss_pred             E-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecccceeeEEe
Confidence            4       88999999999999988 78999999999999999998643    233             33567899999


Q ss_pred             EeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          331 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       331 ~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      .+|....+|+++-..|+-|++.. +..+..+.+|...+               ..++...|+ ++++|++.|.+..||.+
T Consensus       327 lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  327 LHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             cCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEEEEecC
Confidence            99999899998888999999986 88888899998764               578877665 78899999999999999


Q ss_pred             CCC
Q 010933          411 VGS  413 (497)
Q Consensus       411 ~~~  413 (497)
                      ++.
T Consensus       390 sg~  392 (460)
T KOG0285|consen  390 SGH  392 (460)
T ss_pred             cCc
Confidence            873

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.2e-37  Score=265.62  Aligned_cols=275  Identities=19%  Similarity=0.276  Sum_probs=232.0

Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      +.+|..|+|  .|+|+.|++|+..|.+.+|+......+.                                         
T Consensus        96 kc~V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFEt-----------------------------------------  132 (464)
T KOG0284|consen   96 KCPVNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFET-----------------------------------------  132 (464)
T ss_pred             ccceeeEEE--cCCCceeEeecccccEEEecCceeeHHH-----------------------------------------
Confidence            378999999  7899999999999999999875433211                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC-CCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i  266 (497)
                                          ++..|.++|.++.|+++|.++++| .+|.|++|+...  ..++.       .. .|...|
T Consensus       133 --------------------ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~-------~~ahh~eaI  183 (464)
T KOG0284|consen  133 --------------------ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKI-------IQAHHAEAI  183 (464)
T ss_pred             --------------------HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHH-------hhHhhhhhh
Confidence                                137999999999999999999999 999999999872  22322       33 455999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~  345 (497)
                      ++++|+|+. ..|++++.||+|+|||....+..    +++.+             |.-.+.++.|+|...+|++|++ ..
T Consensus       184 RdlafSpnD-skF~t~SdDg~ikiWdf~~~kee----~vL~G-------------HgwdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  184 RDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE----RVLRG-------------HGWDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             heeccCCCC-ceeEEecCCCeEEEEeccCCchh----heecc-------------CCCCcceeccCCccceeEEccCCce
Confidence            999999988 99999999999999999876433    44444             5678999999999999999864 99


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      |++||.++ +.++.++.+|...|               ..+.|+|++++|+++|.|..++++|+++.+++ ..+++|+..
T Consensus       246 VKlWDprS-g~cl~tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-~~~r~Hkkd  308 (464)
T KOG0284|consen  246 VKLWDPRS-GSCLATLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-FTYRGHKKD  308 (464)
T ss_pred             eEeecCCC-cchhhhhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHhHHH-HHhhcchhh
Confidence            99999997 99999999999875               79999999999999999999999999977555 899999999


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eecCCC---CCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~---~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      ++++.++|. ...+     |.+|+.||. ..|..+   .....-..|...|.+|+|||=|.+||+|+ +..+.+|.
T Consensus       309 v~~~~WhP~-~~~l-----ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  309 VTSLTWHPL-NESL-----FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             heeeccccc-cccc-----eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            999999997 4444     899999999 777222   23334568999999999999999999999 55688885

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-36  Score=254.12  Aligned_cols=281  Identities=17%  Similarity=0.223  Sum_probs=244.6

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|..+|+.+-|+|+-..++++++|++|++||..+++.                       ...++||+           
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-----------------------e~~LrGHt-----------  150 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-----------------------ERSLRGHT-----------  150 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCceEEEEEccchhh-----------------------hhhhhccc-----------
Confidence            46889999999999999999999999999999998843                       78899999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|.+++|  +..|+++++++.|=.+++||..+..                                            
T Consensus       151 -~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~--------------------------------------------  183 (406)
T KOG0295|consen  151 -DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF--------------------------------------------  183 (406)
T ss_pred             -cceeEEEE--ecCccEEEecCCccchhheeHHHHH--------------------------------------------
Confidence             88999999  6789999999999999999998642                                            


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                     +|++.. .+|...|.++.|-|.|.+++++ .|.+|+.|++. .+.++++       +.+|...+.
T Consensus       184 ---------------~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t-------~~~h~ewvr  239 (406)
T KOG0295|consen  184 ---------------RCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKT-------FPGHSEWVR  239 (406)
T ss_pred             ---------------HHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEe-------ccCchHhEE
Confidence                           133333 6899999999999999999999 99999999999 6777776       899999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-------------
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-------------  334 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------------  334 (497)
                      .++.+.|| .++|+++.|.++++|-+.+++..    ..+             .+|.-++-+++|-|.             
T Consensus       240 ~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~l-------------R~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  240 MVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AEL-------------REHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             EEEecCCe-eEEEecCCCceEEEEEeccchhh----hhh-------------hccccceEEEEecccccCcchhhccCCC
Confidence            99999999 99999999999999999987533    233             335567788887653             


Q ss_pred             --CCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          335 --GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       335 --g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                        +.++++++ |++|++||+.+ +.++.++.+|.+.+               .+++|+|.|+||+++.+|+++++||+++
T Consensus       302 ~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  302 NGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             CCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence              25778875 69999999998 99999999999987               7999999999999999999999999999


Q ss_pred             CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ++.. ..+++|..-++++.|....  .+     +++|+-|.. ++|
T Consensus       366 ~~cm-k~~~ah~hfvt~lDfh~~~--p~-----VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  366 LQCM-KTLEAHEHFVTSLDFHKTA--PY-----VVTGSVDQTVKVW  403 (406)
T ss_pred             ceee-eccCCCcceeEEEecCCCC--ce-----EEeccccceeeee
Confidence            8655 8899999999999998743  34     899999988 888

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.9e-34  Score=264.16  Aligned_cols=373  Identities=13%  Similarity=0.156  Sum_probs=287.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      -..+|.|+.|||||+++|.|.. +.+.||...+...               ...+.+....++.+|-            .
T Consensus        95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~---------------~~~~pFvl~r~~~g~f------------d  146 (893)
T KOG0291|consen   95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIK---------------NEFNPFVLHRTYLGHF------------D  146 (893)
T ss_pred             ecCccceEEECCCCcEEEEEec-ceeEEEecCcchh---------------cccCcceEeeeecCCc------------c
Confidence            3689999999999999999875 5899999755321               1245667778888998            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.++.|  +.|.++|+++|.|.++++|+++..+-....           ....+.+.++.+.+..+..-+.+.+.  +|
T Consensus       147 di~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~-----------~l~gHkd~VvacfF~~~~~~l~tvsk--dG  211 (893)
T KOG0291|consen  147 DITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTY-----------ALNGHKDYVVACFFGANSLDLYTVSK--DG  211 (893)
T ss_pred             ceeEEEe--ccCCceEEeccccceEEEEEeccccccceE-----------eccCCCcceEEEEeccCcceEEEEec--Cc
Confidence            8999999  689999999999999999999876532111           11123344555555555555555554  88


Q ss_pred             ceEEEeecCC------------------------c-----cce-eeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 010933          191 ATKIANVGNS------------------------V-----HAR-CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  239 (497)
Q Consensus       191 ~~~~~~~~~~------------------------~-----~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~i  239 (497)
                      .+.+|..+..                        .     ... ..+.++......+++.+|++..+.|++| ..|...+
T Consensus       212 ~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~L  291 (893)
T KOG0291|consen  212 ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGL  291 (893)
T ss_pred             eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEE
Confidence            8899987611                        0     000 1123334555789999999999999999 9999999


Q ss_pred             EeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-CeEEEEEccCCcccccccceecccccccCCccc
Q 010933          240 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSF  318 (497)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (497)
                      |++. ...+++.       +.-...+|..++|+..| ..||.|+.. |.+.||+.++...+      ++.          
T Consensus       292 yelP-~f~lih~-------LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYV------lKQ----------  346 (893)
T KOG0291|consen  292 YELP-DFNLIHS-------LSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYV------LKQ----------  346 (893)
T ss_pred             EecC-CceEEEE-------eecccceeeEEEecccC-CEEEEcCCccceEEEEEeecccee------eec----------
Confidence            9998 5556654       44456789999999999 999998775 89999999876533      322          


Q ss_pred             cccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933          319 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  397 (497)
Q Consensus       319 ~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  397 (497)
                       ++|...+++++++|||+++|+|. ||.|+|||.+. +-++.++..|...+               +.+.|+..|+.|++
T Consensus       347 -QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~V---------------t~v~f~~~g~~lls  409 (893)
T KOG0291|consen  347 -QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGV---------------TAVQFTARGNVLLS  409 (893)
T ss_pred             -cccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCce---------------EEEEEEecCCEEEE
Confidence             45778899999999999999985 59999999986 88999999999876               79999999999999


Q ss_pred             EeCCCcEEEEEcCCCCcceEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc--eec--CCCCCcccccccCCCe
Q 010933          398 GSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLSSKL  472 (497)
Q Consensus       398 ~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~--~iw--~~~~~~~~~~~~~~~i  472 (497)
                      .+-||+|+.||+.....- .++.. ..-+..+++.-|  .|..     ++.|+.|.-  .+|  .+++++-.+.+|+++|
T Consensus       410 sSLDGtVRAwDlkRYrNf-RTft~P~p~QfscvavD~--sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV  481 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNF-RTFTSPEPIQFSCVAVDP--SGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV  481 (893)
T ss_pred             eecCCeEEeeeeccccee-eeecCCCceeeeEEEEcC--CCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence            999999999999876432 33332 223334445544  3444     677777776  888  7888888899999999


Q ss_pred             EEEEEecCCCEEEEEe-CCceEEEe
Q 010933          473 LHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       473 ~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      .+++|+|++..||+++ +..+.+|+
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEE
Confidence            9999999999999999 77799997

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.1e-35  Score=270.51  Aligned_cols=263  Identities=13%  Similarity=0.077  Sum_probs=215.2

Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                      ++.+++|+.+   +.+|++++.   ...+.+..|.|.+++++.| ..|.+.+||+. ....+.+       .+.|++.|.
T Consensus       393 ~~SikiWn~~---t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Et-------i~AHdgaIW  458 (888)
T KOG0306|consen  393 GESIKIWNRD---TLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVET-------IRAHDGAIW  458 (888)
T ss_pred             CCcEEEEEcc---CcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhh-------hhcccccee
Confidence            4689999998   457888872   2388999999999999999 99999999998 4445543       578999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  345 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~  345 (497)
                      +++.+|++ ..+++|+.|.+|++||+.--.... ...+.+..+..      ..-.....|.|+.+||||++|+++ -|++
T Consensus       459 si~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~------rtLel~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  459 SISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT------RTLELEDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             eeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccc------eEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence            99999999 999999999999999985321100 00011111000      011224679999999999999998 5799


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      +++|-+.+ -+....+-||.-++               +++..|||+++++|||.|.+|+||-++-|.. .+.+-+|.+.
T Consensus       532 VkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFGDC-HKS~fAHdDS  594 (888)
T KOG0306|consen  532 VKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFGDC-HKSFFAHDDS  594 (888)
T ss_pred             EEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccchh-hhhhhcccCc
Confidence            99999987 88888999999876               7999999999999999999999999998855 4899999999


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      |.++.|.|  ....     |.++|.|+. +-|  ..=+....+.+|...|.+++.+|+|.++++++ +.++.+|.
T Consensus       595 vm~V~F~P--~~~~-----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  595 VMSVQFLP--KTHL-----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             eeEEEEcc--ccee-----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            99999999  4555     899999999 999  33356667889999999999999999999999 56799986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-34  Score=265.55  Aligned_cols=374  Identities=15%  Similarity=0.153  Sum_probs=279.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~  108 (497)
                      +..+.|++++.+||+++|++++..+-+++|++.+++                       ++++++. |+           
T Consensus        60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk-----------------------~irswKa~He-----------  105 (775)
T KOG0319|consen   60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK-----------------------LIRSWKAIHE-----------  105 (775)
T ss_pred             cchhhhheeeecCCccEEEEeeccceEEEEEcccch-----------------------HhHhHhhccC-----------
Confidence            346789999999999999999999999999999874                       4777777 88           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCc--cccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF--AHGYHLEW  186 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  186 (497)
                       ++|.-++|  +|.+..+++|+.|+.+++||+..+.+......             +.|.+....+.+..  ..++.+..
T Consensus       106 -~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-------------~gGvVssl~F~~~~~~~lL~sg~~  169 (775)
T KOG0319|consen  106 -APVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-------------HGGVVSSLLFHPHWNRWLLASGAT  169 (775)
T ss_pred             -CCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecC-------------CCceEEEEEeCCccchhheeecCC
Confidence             99999999  67889999999999999999998887654332             22333333333332  23444443


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce------------------
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ------------------  247 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~------------------  247 (497)
                        ++.+++|++.....  |+.+. ..|.+.|+++++.+++..++++ .|..+.+||+...+.                  
T Consensus       170 --D~~v~vwnl~~~~t--cl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~  244 (775)
T KOG0319|consen  170 --DGTVRVWNLNDKRT--CLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE  244 (775)
T ss_pred             --CceEEEEEcccCch--HHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEech
Confidence              88999999986543  55554 7999999999999999888887 999999998753100                  


Q ss_pred             ----------------eeEEee----------------------------------------------------------
Q 010933          248 ----------------CFNIVD----------------------------------------------------------  253 (497)
Q Consensus       248 ----------------~~~~~~----------------------------------------------------------  253 (497)
                                      ..+.++                                                          
T Consensus       245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd  324 (775)
T KOG0319|consen  245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND  324 (775)
T ss_pred             hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence                            000000                                                          


Q ss_pred             ----------------------------cCC---CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010933          254 ----------------------------MKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS  302 (497)
Q Consensus       254 ----------------------------~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  302 (497)
                                                  .+.   .-+.+|+..|.++....+| -+|++|+.|..+++|.++++..... 
T Consensus       325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~-  402 (775)
T KOG0319|consen  325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSL-  402 (775)
T ss_pred             hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhh-
Confidence                                        000   0134566667777755555 6778888888888887744322111 


Q ss_pred             cceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ecCeEEEEecCCCCce-----ee----eeeecccccccc
Q 010933          303 ARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTP-----VA----TFKIHEHLRPKL  371 (497)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~lwd~~~~~~~-----~~----~~~~~~~~~~~~  371 (497)
                                  ......+|...|.+++++..+ .+|+++ +|.++++|++.. .+.     +.    +...|...    
T Consensus       403 ------------~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~~t~~aHdKd----  465 (775)
T KOG0319|consen  403 ------------CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCRYTERAHDKD----  465 (775)
T ss_pred             ------------hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhhHHHHhhccc----
Confidence                        111235788999999998766 466766 569999999974 211     11    22344443    


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeecc
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  451 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d  451 (497)
                                 |++++++|+.+++||||.|.+.+||+++.. .+..++.+|...++++.|++  ..+.     +++++.|
T Consensus       466 -----------IN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~--~dq~-----laT~SgD  526 (775)
T KOG0319|consen  466 -----------INCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSK--NDQL-----LATCSGD  526 (775)
T ss_pred             -----------ccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecc--ccce-----eEeccCC
Confidence                       369999999999999999999999999965 66699999999999999999  5566     9999999


Q ss_pred             Cc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          452 QA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       452 ~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                      +. +||  ....-..++.+|+..|..++|-.+|+.|++++.+| +++|+
T Consensus       527 ~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  527 KTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            99 999  34445667889999999999999999999988666 89997

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-34  Score=260.77  Aligned_cols=266  Identities=17%  Similarity=0.230  Sum_probs=227.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .+++.|.++.|+|...+++++-.+|.|.||+.++..                       .++.++-.+            
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-----------------------mVksfeV~~------------   55 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-----------------------MVKSFEVSE------------   55 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEecccce-----------------------eeeeeeecc------------
Confidence            488999999999999999999999999999998863                       367777666            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      -+|.+..|.  ....++++|+.|..|++|+..+++..                                           
T Consensus        56 ~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV-------------------------------------------   90 (794)
T KOG0276|consen   56 VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKV-------------------------------------------   90 (794)
T ss_pred             cchhhheee--eccceEEEecCCceEEEEecccceee-------------------------------------------
Confidence            889999996  44569999999999999999887633                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                       +.| ..|.+.|.+++.+|.-.+++++ +|-+|++||.+..=.+.++       +++|+..|++
T Consensus        91 -----------------~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~HyVMq  145 (794)
T KOG0276|consen   91 -----------------KTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHEHYVMQ  145 (794)
T ss_pred             -----------------EEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcceEEEE
Confidence                             333 8999999999999999999999 9999999999955455554       8999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--CEEEEEec-Ce
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY-MN  345 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~-~~  345 (497)
                      ++|+|...+.+|+++-|++|++|.+.+....    .             ++.+|...|+++.+-+.|  .||++|+| ..
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----f-------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPN----F-------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCc----e-------------eeeccccCcceEEeccCCCcceEEecCCCce
Confidence            9999988899999999999999999765322    2             245678999999998755  69999865 99


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      ++|||.++ ..+++++.+|...+               ..+.|+|.=..+++||+||+++||+-.+-+.+ .++...-..
T Consensus       209 iKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE-~tLn~gleR  271 (794)
T KOG0276|consen  209 IKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTYKLE-KTLNYGLER  271 (794)
T ss_pred             EEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcceehh-hhhhcCCce
Confidence            99999997 99999999999876               58999999999999999999999998887443 677777777


Q ss_pred             eeeeEeecC
Q 010933          426 NRKPILQAA  434 (497)
Q Consensus       426 v~~~~~~~~  434 (497)
                      +++++..+.
T Consensus       272 vW~I~~~k~  280 (794)
T KOG0276|consen  272 VWCIAAHKG  280 (794)
T ss_pred             EEEEeecCC
Confidence            888876553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.9e-34  Score=273.36  Aligned_cols=288  Identities=23%  Similarity=0.413  Sum_probs=235.9

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      |...|.|+.|+|+|+++++++.|+.+++|+..+.+.                     .....+.+|.            .
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~  204 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R  204 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence            478999999999999999999999999999966531                     2356668898            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|++++|  +++++++++++.|++|++||+....                                              
T Consensus       205 ~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~----------------------------------------------  236 (456)
T KOG0266|consen  205 GVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDG----------------------------------------------  236 (456)
T ss_pred             ceeeeEE--CCCCcEEEEecCCceEEEeeccCCC----------------------------------------------
Confidence            8999999  7899999999999999999994321                                              


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                   .+++++ .+|...|++++|+|+++.+++| .|++|++||++ .+.+...       +.+|...|.++
T Consensus       237 -------------~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~-------l~~hs~~is~~  294 (456)
T KOG0266|consen  237 -------------RNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRK-------LKGHSDGISGL  294 (456)
T ss_pred             -------------eEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEe-------eeccCCceEEE
Confidence                         244444 7999999999999999999999 99999999999 5666665       88999999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~l  348 (497)
                      +|++++ ++|++++.|+.|++||+.++...  ..+.+..+.          ... .++++.|+|++++++++.+ +.+++
T Consensus       295 ~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~----------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~  360 (456)
T KOG0266|consen  295 AFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAE----------NSA-PVTSVQFSPNGKYLLSASLDRTLKL  360 (456)
T ss_pred             EECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCC----------CCC-ceeEEEECCCCcEEEEecCCCeEEE
Confidence            999999 99999999999999999998631  002333211          011 5899999999999999865 89999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-Cccee
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENR  427 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~  427 (497)
                      ||+.. +.....+.+|...+  .       ++   .+...++.++++++|+.|+.|++|+..++.. ...+.+| ...+.
T Consensus       361 w~l~~-~~~~~~~~~~~~~~--~-------~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-~~~l~~h~~~~~~  426 (456)
T KOG0266|consen  361 WDLRS-GKSVGTYTGHSNLV--R-------CI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI-LQRLEGHSKAAVS  426 (456)
T ss_pred             EEccC-CcceeeecccCCcc--e-------eE---ecccccCCCCeEEEEeCCceEEEEeCCccch-hhhhcCCCCCcee
Confidence            99986 88899999888742  1       22   3566688999999999999999999999644 4889999 88888


Q ss_pred             eeEeecCCCcccccccceeEee--ccCc-eec
Q 010933          428 KPILQAAPRARRSSLSNLTRGL--YRQA-HEN  456 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~--~d~~-~iw  456 (497)
                      .+.+.+.  ...     +++++  .|+. .+|
T Consensus       427 ~~~~~~~--~~~-----~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  427 DLSSHPT--ENL-----IASSSFEGDGLIRLW  451 (456)
T ss_pred             ccccCCC--cCe-----eeecCcCCCceEEEe
Confidence            8888884  222     56666  5565 777

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.3e-33  Score=228.57  Aligned_cols=285  Identities=15%  Similarity=0.238  Sum_probs=224.4

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      +..+++|.            +++..++|+  |. |..|+++|.|+.|++|+...+..                       
T Consensus         7 ~~~~~gh~------------~r~W~~awh--p~~g~ilAscg~Dk~vriw~~~~~~s-----------------------   49 (312)
T KOG0645|consen    7 EQKLSGHK------------DRVWSVAWH--PGKGVILASCGTDKAVRIWSTSSGDS-----------------------   49 (312)
T ss_pred             EEeecCCC------------CcEEEEEec--cCCceEEEeecCCceEEEEecCCCCc-----------------------
Confidence            56678898            899999996  44 77899999999999999875331                       


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-c
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-D  246 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~  246 (497)
                                                        ..|...+-.+|+..|.+++|+|.|++|++| .|.++.||.-... -
T Consensus        50 ----------------------------------~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef   95 (312)
T KOG0645|consen   50 ----------------------------------WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF   95 (312)
T ss_pred             ----------------------------------EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence                                              123333336899999999999999999999 9999999976521 1


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      ++..       ++++|+..|.+++|+++| ++||+++.|+.|-||.+..+...    ...          ..+.+|...|
T Consensus        96 ecv~-------~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf----ec~----------aVL~~HtqDV  153 (312)
T KOG0645|consen   96 ECVA-------TLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF----ECI----------AVLQEHTQDV  153 (312)
T ss_pred             eEEe-------eeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE----EEE----------eeeccccccc
Confidence            3333       489999999999999999 99999999999999999865432    111          1245577889


Q ss_pred             cEEEEeeCCCEEEEEec-CeEEEEecCC--CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933          327 SDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  403 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~~-~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  403 (497)
                      ..+.|+|...+|+++++ ++|++|+-..  +-.+.+++.+|...+               ++++|++.|..|++++.|++
T Consensus       154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV---------------W~~~F~~~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV---------------WSLAFDNIGSRLVSCSDDGT  218 (312)
T ss_pred             cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE---------------EEEEecCCCceEEEecCCcc
Confidence            99999999999999875 9999998652  246889999998765               79999999999999999999


Q ss_pred             EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC----CCcc-----cccccCCCeE
Q 010933          404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS----GHHE-----LSYNLSSKLL  473 (497)
Q Consensus       404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~----~~~~-----~~~~~~~~i~  473 (497)
                      ++||...+.     .-..|..++..+.+-.         +.+|+++.|+. +++...    +...     ....|...|+
T Consensus       219 v~Iw~~~~~-----~~~~~sr~~Y~v~W~~---------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN  284 (312)
T KOG0645|consen  219 VSIWRLYTD-----LSGMHSRALYDVPWDN---------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN  284 (312)
T ss_pred             eEeeeeccC-----cchhcccceEeeeecc---------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence            999996532     1224667777777761         23899999999 888222    2221     2346888999


Q ss_pred             EEEEecC-CCEEEEEeCCc-eEEEe
Q 010933          474 HLAWHPT-TNLIACANGNS-LFFHY  496 (497)
Q Consensus       474 ~l~~~p~-~~~la~~~~~~-~~i~~  496 (497)
                      +++|+|. .+.|+++++|+ +.+|.
T Consensus       285 sV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  285 SVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             eEEEcCCCCCceeecCCCceEEEEE
Confidence            9999995 67788888666 77775

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.8e-33  Score=228.88  Aligned_cols=287  Identities=16%  Similarity=0.281  Sum_probs=224.4

Q ss_pred             ccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cccCccccccccc
Q 010933           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSL  106 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~  106 (497)
                      .+|++.|..++|+|- |..||+|+.|+.|+||+...+.                    .+.+...+ .+|+         
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk---------   61 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK---------   61 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch---------
Confidence            358999999999998 8999999999999999987532                    34555555 4687         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         ..|.+++|  +|.|++|+++|.|.++.||.-..++.                                         
T Consensus        62 ---rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~ef-----------------------------------------   95 (312)
T KOG0645|consen   62 ---RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEF-----------------------------------------   95 (312)
T ss_pred             ---heeeeeee--cCCCcEEEEeeccceEEEeecCCCce-----------------------------------------
Confidence               88999999  78999999999999999998765552                                         


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                       +|+.++ .+|...|.+++|+++|++||++ .|+.|-||.+. .+..+...    ..+++|...
T Consensus        96 -----------------ecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~----aVL~~HtqD  152 (312)
T KOG0645|consen   96 -----------------ECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECI----AVLQEHTQD  152 (312)
T ss_pred             -----------------eEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEE----eeecccccc
Confidence                             355554 8999999999999999999999 99999999988 33322221    238899999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~  344 (497)
                      |..+.|+|.. .+|++++.|++|++|+-..+.       .+..       ..++.+|...+.+++|+|.|..|+++++ +
T Consensus       153 VK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd-------dW~c-------~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  153 VKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD-------DWEC-------VQTLDGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             ccEEEEcCCc-ceeEEeccCCeEEEEeecCCC-------CeeE-------EEEecCccceEEEEEecCCCceEEEecCCc
Confidence            9999999998 899999999999999876321       1111       1234556778999999999999999865 9


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC------cceEE
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS------AGGIT  418 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~------~~~~~  418 (497)
                      .++||.....-.     ..|...+               +.+.|.  ...|++++.|+.|++|.-...-      .....
T Consensus       218 tv~Iw~~~~~~~-----~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~  275 (312)
T KOG0645|consen  218 TVSIWRLYTDLS-----GMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK  275 (312)
T ss_pred             ceEeeeeccCcc-----hhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh
Confidence            999998653111     1222222               578887  4589999999999999876431      11234


Q ss_pred             EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      -..|...|+++.+.|...+      .|++|++||. ++|
T Consensus       276 ~~aHe~dVNsV~w~p~~~~------~L~s~~DDG~v~~W  308 (312)
T KOG0645|consen  276 EGAHEVDVNSVQWNPKVSN------RLASGGDDGIVNFW  308 (312)
T ss_pred             hcccccccceEEEcCCCCC------ceeecCCCceEEEE
Confidence            4679999999999993222      3899999999 999

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.1e-33  Score=236.43  Aligned_cols=329  Identities=12%  Similarity=0.106  Sum_probs=261.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|++.|.+++.+|+.+++|||+.|..-.||+..+++.                       ..++.+|.            
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------------~~eltgHK------------  106 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------------AGELTGHK------------  106 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------------eeEecCCC------------
Confidence            5999999999999999999999999999999998843                       78889999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|+++.|  +.+|.+|++|..+|.|+||+..++......                                        
T Consensus       107 DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~----------------------------------------  144 (399)
T KOG0296|consen  107 DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKL----------------------------------------  144 (399)
T ss_pred             CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEe----------------------------------------
Confidence            99999999  789999999999999999999987744321                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                           ...-..+.-+.|+|.+..|++| .||.+.+|.+. .+...++       +.+|..++++
T Consensus       145 ---------------------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv-------~~Gh~~~ct~  195 (399)
T KOG0296|consen  145 ---------------------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKV-------MSGHNSPCTC  195 (399)
T ss_pred             ---------------------ecccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeE-------ecCCCCCccc
Confidence                                 1234567789999999999999 99999999999 4344554       7899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      =.|.|+| +.++++..||.|++||..+++..    ..+.. .+           .....++.++..+..++.|+ ++.++
T Consensus       196 G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~-~e-----------~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  196 GEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQ-AE-----------GLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             ccccCCC-ceEEEEecCceEEEEecCCCcee----EEecc-cc-----------cCcCCccccccccceeEeccCCccEE
Confidence            9999999 99999999999999999998754    22221 00           14577888888888888885 48888


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +-+..+ ++.+....+... ..........+++   -.+.|+..=.+.|+|+.||+|.|||+....  .+....|..+|.
T Consensus       259 ~~~~~s-gKVv~~~n~~~~-~l~~~~e~~~esv---e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~  331 (399)
T KOG0296|consen  259 GVNNGS-GKVVNCNNGTVP-ELKPSQEELDESV---ESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVT  331 (399)
T ss_pred             EEcccc-ceEEEecCCCCc-cccccchhhhhhh---hhcccccccchhhcccccceEEEEecccch--hheeccCCCceE
Confidence            888765 776666553110 0000000011122   244555555688999999999999998653  366778899999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                      ++.|-+.   .     .|+++..+|. +.|  .+++....+.+|...|.+++.+|+++.++++++|+ ..||.
T Consensus       332 ~l~w~~t---~-----~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  332 KLKWLNT---D-----YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             EEEEcCc---c-----hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            9999872   2     3899999999 999  88899999999999999999999999999999555 77775

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.1e-34  Score=253.35  Aligned_cols=284  Identities=15%  Similarity=0.197  Sum_probs=233.4

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +|+..|+++.|.| .+.+|++|+.|+.|+||++-..                      .++++++.+|.           
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------------~~~lrtf~gH~-----------  258 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------------RRCLRTFKGHR-----------  258 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------------cceehhhhcch-----------
Confidence            6999999999999 8999999999999999998762                      36799999999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       .+|.+++|  +++|..|+++|.|+.+++||+++|++...                                        
T Consensus       259 -k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~----------------------------------------  295 (503)
T KOG0282|consen  259 -KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSR----------------------------------------  295 (503)
T ss_pred             -hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEE----------------------------------------
Confidence             99999999  78999999999999999999999985542                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                          +  .....++++.|+|++ +.+++| .|+.|+.||++ .++.++.       ...|-..|
T Consensus       296 --------------------f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqe-------Yd~hLg~i  345 (503)
T KOG0282|consen  296 --------------------F--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQE-------YDRHLGAI  345 (503)
T ss_pred             --------------------E--ecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHH-------HHhhhhhe
Confidence                                1  223467899999988 778888 99999999999 5555543       67788999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      ..+.|-++| ..+++.+.|+.++||+.+..-.+    +....            .+.-...++..+|+++++++-+ ++.
T Consensus       346 ~~i~F~~~g-~rFissSDdks~riWe~~~~v~i----k~i~~------------~~~hsmP~~~~~P~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  346 LDITFVDEG-RRFISSSDDKSVRIWENRIPVPI----KNIAD------------PEMHTMPCLTLHPNGKWFAAQSMDNY  408 (503)
T ss_pred             eeeEEccCC-ceEeeeccCccEEEEEcCCCccc----hhhcc------------hhhccCcceecCCCCCeehhhccCce
Confidence            999999999 99999999999999999876443    11111            1124578899999999999865 599


Q ss_pred             EEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933          346 LKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       346 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      |.+|.+...-  ...+.+++|...-.             -..+.|||||.+|++|+.||.+.+||.++- .+...+++|.
T Consensus       409 i~ifs~~~~~r~nkkK~feGh~vaGy-------------s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~  474 (503)
T KOG0282|consen  409 IAIFSTVPPFRLNKKKRFEGHSVAGY-------------SCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHD  474 (503)
T ss_pred             EEEEecccccccCHhhhhcceeccCc-------------eeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCC
Confidence            9999875422  23455677754311             147999999999999999999999999987 4458999999


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .++..+.+.|....      .+|+++-+|. ++|
T Consensus       475 ~~ci~v~wHP~e~S------kvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  475 QPCIGVDWHPVEPS------KVATCGWDGLIKIW  502 (503)
T ss_pred             cceEEEEecCCCcc------eeEecccCceeEec
Confidence            99999999996333      3799998888 888

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8e-32  Score=247.05  Aligned_cols=279  Identities=23%  Similarity=0.400  Sum_probs=231.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.++|++++|+|++++|++++.||.|++|+..+++.                       ...+..|.            
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~------------   51 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT------------   51 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC------------
Confidence            4899999999999999999999999999999987632                       45567787            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..+..+.|  .++++++++++.|+.|++|++.+++...                                          
T Consensus        52 ~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~------------------------------------------   87 (289)
T cd00200          52 GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVR------------------------------------------   87 (289)
T ss_pred             cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceE------------------------------------------
Confidence            77899999  5777899999999999999998754211                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                        .+ ..|...+.++.|++++++++++ .++.|.+||++ ..+....       +..|...+.+
T Consensus        88 ------------------~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~~i~~  140 (289)
T cd00200          88 ------------------TL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTT-------LRGHTDWVNS  140 (289)
T ss_pred             ------------------EE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEE-------eccCCCcEEE
Confidence                              11 5777789999999998888888 69999999998 4444443       4578889999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ .++++++.|+.|++||+++++..    ..+..             |...+.++.|+|+++.+++++ ++.|+
T Consensus       141 ~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~~~i~  202 (289)
T cd00200         141 VAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----ATLTG-------------HTGEVNSVAFSPDGEKLLSSSSDGTIK  202 (289)
T ss_pred             EEEcCcC-CEEEEEcCCCcEEEEEccccccc----eeEec-------------CccccceEEECCCcCEEEEecCCCcEE
Confidence            9999997 88888888999999999876544    33333             346899999999998888775 69999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||++. ++.+..+..|...+               .+++|+|++.++++++.||.|++|++.+++. ...+..|...+.
T Consensus       203 i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~  265 (289)
T cd00200         203 LWDLST-GKCLGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVT  265 (289)
T ss_pred             EEECCC-CceecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEccccCCcEE
Confidence            999986 77787776666543               6899999999999998899999999988644 477889999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eec
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .+++++  ++..     +++++.|+. ++|
T Consensus       266 ~~~~~~--~~~~-----l~~~~~d~~i~iw  288 (289)
T cd00200         266 SLAWSP--DGKR-----LASGSADGTIRIW  288 (289)
T ss_pred             EEEECC--CCCE-----EEEecCCCeEEec
Confidence            999998  4555     899999988 887

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.6e-33  Score=238.17  Aligned_cols=303  Identities=17%  Similarity=0.257  Sum_probs=241.7

Q ss_pred             hhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc
Q 010933           16 CSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS   95 (497)
Q Consensus        16 ~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (497)
                      +.+.+-.+.+...+.|.+.|.++...  +++|++|++||.++|||..+                        +...++.|
T Consensus        89 Yv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G------------------------k~~~~~~G  142 (423)
T KOG0313|consen   89 YVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG------------------------KSIKTIVG  142 (423)
T ss_pred             EEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC------------------------ceEEEEec
Confidence            33445566677788899999999988  78999999999999999876                        44678899


Q ss_pred             cCcccccccccccccceeEEEEEe-cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933           96 HEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  174 (497)
Q Consensus        96 h~~~~~~~~~~~~~~~i~~l~~~~-s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (497)
                      |.            ++|.+++|.- ++....|++++.|.++++|.++.++.+..                          
T Consensus       143 ht------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--------------------------  184 (423)
T KOG0313|consen  143 HT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--------------------------  184 (423)
T ss_pred             CC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--------------------------
Confidence            99            9999999973 33345799999999999999987763321                          


Q ss_pred             CCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc-eeeEE-
Q 010933          175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNI-  251 (497)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~-  251 (497)
                                                    +++.- .||...|-+++..++|..+++| .|.+|.+|+..... ..+.- 
T Consensus       185 ------------------------------~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~  233 (423)
T KOG0313|consen  185 ------------------------------ALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS  233 (423)
T ss_pred             ------------------------------HHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence                                          11111 5999999999999999999999 99999999933110 00000 


Q ss_pred             ---------------eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCc
Q 010933          252 ---------------VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  316 (497)
Q Consensus       252 ---------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  316 (497)
                                     ...+..++.+|..+|.++.|++.  ..+++++.|.+|+.||+.+++...    .+..        
T Consensus       234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~----~~~~--------  299 (423)
T KOG0313|consen  234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS----TLTT--------  299 (423)
T ss_pred             chhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee----eeec--------
Confidence                           00111357899999999999994  689999999999999999987662    2222        


Q ss_pred             cccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCC
Q 010933          317 SFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  393 (497)
Q Consensus       317 ~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  393 (497)
                            ...++++.++|..++|++| +|..+++||.++++  ...+++.+|.+.+               .++.|+|...
T Consensus       300 ------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~  358 (423)
T KOG0313|consen  300 ------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNE  358 (423)
T ss_pred             ------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCc
Confidence                  2578999999999999998 56999999998743  3567889999987               5899999654


Q ss_pred             -EEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          394 -HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       394 -~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                       .|++|+.|+++++||+++.......+.+|...|.++.+..   +.     .+++||.|+. +++
T Consensus       359 ~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~---~~-----~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  359 FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE---GG-----LIVSGGADNKLRIF  415 (423)
T ss_pred             eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC---Cc-----eEEeccCcceEEEe
Confidence             6789999999999999998767799999999999999975   33     3899999998 877

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.7e-31  Score=274.77  Aligned_cols=304  Identities=20%  Similarity=0.291  Sum_probs=221.6

Q ss_pred             CCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        26 ~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      ++...|.+.|.+++|+|+|++||+|+.|+.|+||+........              .. .......+.+ .        
T Consensus       477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--------------~~-~~~~~~~~~~-~--------  532 (793)
T PLN00181        477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--------------RD-IHYPVVELAS-R--------  532 (793)
T ss_pred             ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc--------------cc-cccceEEecc-c--------
Confidence            3445689999999999999999999999999999976421100              00 0001111222 2        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                          ..|.+++|++ +++.+|++++.|++|++||+.+++..                                       
T Consensus       533 ----~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~---------------------------------------  568 (793)
T PLN00181        533 ----SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLV---------------------------------------  568 (793)
T ss_pred             ----CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEE---------------------------------------
Confidence                6689999963 45789999999999999999865522                                       


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                           ..+ .+|...|++++|+| ++..|++| .|+.|++||++ .+.....       +. +.
T Consensus       569 ---------------------~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~-------~~-~~  617 (793)
T PLN00181        569 ---------------------TEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-QGVSIGT-------IK-TK  617 (793)
T ss_pred             ---------------------EEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-CCcEEEE-------Ee-cC
Confidence                                 222 68999999999997 78899999 99999999998 4555544       23 23


Q ss_pred             CCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          264 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       264 ~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      ..+.++.|++ ++ .+|++|+.||.|++||+++.+...   ..+             .+|...|.++.|. ++.+|++++
T Consensus       618 ~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~~---~~~-------------~~h~~~V~~v~f~-~~~~lvs~s  679 (793)
T PLN00181        618 ANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLPL---CTM-------------IGHSKTVSYVRFV-DSSTLVSSS  679 (793)
T ss_pred             CCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCccc---eEe-------------cCCCCCEEEEEEe-CCCEEEEEE
Confidence            5789999965 56 999999999999999998754210   222             3466789999997 677888774


Q ss_pred             -cCeEEEEecCCC-----CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933          343 -YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  416 (497)
Q Consensus       343 -~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~  416 (497)
                       |+.|++||++..     .+++..+.+|...+               ..++|+|++.+|++|+.|+.|++|+....... 
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~-  743 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPMPV-  743 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCCce-
Confidence             699999999742     35677888887654               57999999999999999999999998755322 


Q ss_pred             EEEe-ccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-CceEE
Q 010933          417 ITVE-AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF  494 (497)
Q Consensus       417 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i  494 (497)
                      ..+. .+..++..                                  .....+...|.+++|+|++..|++|+. +.+.|
T Consensus       744 ~s~~~~~~~~~~~----------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i  789 (793)
T PLN00181        744 LSYKFKTIDPVSG----------------------------------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKI  789 (793)
T ss_pred             EEEecccCCcccc----------------------------------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence            1110 01000000                                  011234557999999999999999884 55999


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |.
T Consensus       790 ~~  791 (793)
T PLN00181        790 LE  791 (793)
T ss_pred             Ee
Confidence            86

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.4e-33  Score=261.34  Aligned_cols=265  Identities=17%  Similarity=0.273  Sum_probs=213.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..++|..|  ++|+.+||.|-.|..|++|.+...+++.+.....-.++...                      +    .+
T Consensus       379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~----------------------s----ad  430 (707)
T KOG0263|consen  379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTE----------------------S----AD  430 (707)
T ss_pred             CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhcccccc----------------------c----cc
Confidence            67899999  68889999999999999999987665544322111100000                      0    00


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                      -....-|.+   .....+++ .+|.++|...+|+|+.++|+++ .|+++++|.+. ...+.-.       ..+|..+|..
T Consensus       431 ~~~~~~D~~---~~~~~~~L-~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~-------y~GH~~PVwd  498 (707)
T KOG0263|consen  431 VDVDMLDDD---SSGTSRTL-YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVI-------YKGHLAPVWD  498 (707)
T ss_pred             hhhhhcccc---CCceeEEe-ecCCCceeeeeecccccceeeccCCcceeeeecc-cceeEEE-------ecCCCcceee
Confidence            011111111   11222333 7999999999999999999999 99999999999 4444443       6799999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      +.|+|.| .+||+++.|++.++|........    +++.+             |.+.+.|+.|+|+..|+++|+ |.++|
T Consensus       499 V~F~P~G-yYFatas~D~tArLWs~d~~~Pl----Rifag-------------hlsDV~cv~FHPNs~Y~aTGSsD~tVR  560 (707)
T KOG0263|consen  499 VQFAPRG-YYFATASHDQTARLWSTDHNKPL----RIFAG-------------HLSDVDCVSFHPNSNYVATGSSDRTVR  560 (707)
T ss_pred             EEecCCc-eEEEecCCCceeeeeecccCCch----hhhcc-------------cccccceEEECCcccccccCCCCceEE
Confidence            9999999 99999999999999998764433    55555             668899999999999999995 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||+.+ +..++.|.||...+               ++++|||+|++|++|+.||.|++||+.++..+ ..+.+|.+.+.
T Consensus       561 lWDv~~-G~~VRiF~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~  623 (707)
T KOG0263|consen  561 LWDVST-GNSVRIFTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIY  623 (707)
T ss_pred             EEEcCC-CcEEEEecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCcee
Confidence            999997 89999999999976               79999999999999999999999999998655 89999999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eec
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ++.|+.  ++..     ||+|+.|.. .+|
T Consensus       624 SlsFS~--dg~v-----Lasgg~DnsV~lW  646 (707)
T KOG0263|consen  624 SLSFSR--DGNV-----LASGGADNSVRLW  646 (707)
T ss_pred             EEEEec--CCCE-----EEecCCCCeEEEE
Confidence            999998  6666     999999999 999

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=260.01  Aligned_cols=272  Identities=21%  Similarity=0.362  Sum_probs=206.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccc----------------------------cch-hhh--hhhcc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNH----------------------------ISR-SEL--EKQMD   78 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~----------------------------~~~-~~~--~~~~~   78 (497)
                      .|.+.|.|+.||+||+|||+|+.|+.|+||.+...+..                            ... +..  +...+
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            69999999999999999999999999999998761110                            000 000  00000


Q ss_pred             cCCCCCC------cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCC
Q 010933           79 FTSTSHP------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD  152 (497)
Q Consensus        79 ~~~~~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  152 (497)
                      .+-...|      .-+++.+|.||.            +.|.+|.|+   .+.+|+++|.|++||+|++...+        
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~--------  401 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKE--------  401 (712)
T ss_pred             CccccCCCccccccccchhhhhccc------------hhheecccc---cCCeeEeccccccEEeecCCCcc--------
Confidence            0000111      345677899999            889999993   45799999999999999998655        


Q ss_pred             CCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEE
Q 010933          153 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS  231 (497)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~  231 (497)
                                                                          |++.|  .|...|+|++|+| |.++|++
T Consensus       402 ----------------------------------------------------CL~~F--~HndfVTcVaFnPvDDryFiS  427 (712)
T KOG0283|consen  402 ----------------------------------------------------CLKVF--SHNDFVTCVAFNPVDDRYFIS  427 (712)
T ss_pred             ----------------------------------------------------eeeEE--ecCCeeEEEEecccCCCcEee
Confidence                                                                55555  8999999999999 8889999


Q ss_pred             E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc
Q 010933          232 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  310 (497)
Q Consensus       232 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~  310 (497)
                      | -|+.|+||++. ..+...        ......-|++++|.|+| +..++|+.+|.+++|+++..++..    .+.-+.
T Consensus       428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~  493 (712)
T KOG0283|consen  428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL  493 (712)
T ss_pred             cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence            9 99999999998 454443        33445889999999999 999999999999999998765432    111100


Q ss_pred             cccCCccccccccccccEEEEeeCC--CEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933          311 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  388 (497)
Q Consensus       311 ~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (497)
                      ..   .+ -..|. .|+.+.|.|..  +.|++..|..|||||.+. ..++..++++......             ....|
T Consensus       494 ~~---~K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf  554 (712)
T KOG0283|consen  494 HN---KK-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF  554 (712)
T ss_pred             cc---Cc-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence            00   00 01122 79999998754  478888899999999985 8889999987764321             37899


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCC
Q 010933          389 SGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       389 s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      +.||++|+++++|..|+||+.+.
T Consensus       555 s~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ccCCCEEEEeecCceEEEEeCCC
Confidence            99999999999999999999844

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-32  Score=255.22  Aligned_cols=296  Identities=16%  Similarity=0.216  Sum_probs=240.1

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      .+..|..++|+|...+++++-..|.|++||..-+                       .++..|..|+            +
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-----------------------tli~rFdeHd------------G   52 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-----------------------TLIDRFDEHD------------G   52 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhh-----------------------hHHhhhhccC------------C
Confidence            3578899999999999999999999999999766                       4488899999            9


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      +|..++|+  |...+|++|+.|..|++|+..+.++.                                            
T Consensus        53 pVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrcl--------------------------------------------   86 (1202)
T KOG0292|consen   53 PVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCL--------------------------------------------   86 (1202)
T ss_pred             ccceeeec--CCCCeEEecCCccEEEEEecccceeh--------------------------------------------
Confidence            99999995  67889999999999999999877643                                            


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                      .++ .+|.+.|..+.|++.-.+|+++ +|.+|+||+.. .+.++.+       +.+|...|+|.
T Consensus        87 ----------------ftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHYVMcA  141 (1202)
T KOG0292|consen   87 ----------------FTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHYVMCA  141 (1202)
T ss_pred             ----------------hhh-ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceEEEee
Confidence                            333 7999999999999999999999 99999999999 7788887       89999999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccc----cceeccccc--------ccCCccccccccccccEEEEeeCCCE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS----ARILRDAAE--------SHGSKSFFTEIIASISDIKFANDGQH  337 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~s~~g~~  337 (497)
                      .|+|.. .+++++|-|.+||+||+..-+.....    ...+..++.        ..--...+.+|...|+.++|+|.-.+
T Consensus       142 qFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl  220 (1202)
T KOG0292|consen  142 QFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL  220 (1202)
T ss_pred             ccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence            999988 89999999999999999653321100    001111111        01112346799999999999999999


Q ss_pred             EEEEec-CeEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          338 LLSRDY-MNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       338 l~~~~~-~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      +++|+| ..|++|.+.... =.+.+..+|.+.+               .++-|+|...+|++.|+|++|+|||+.....+
T Consensus       221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             EEecCCcceeeEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecccccce
Confidence            999865 999999986411 2466788998876               68999999999999999999999999876555


Q ss_pred             eEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec
Q 010933          416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN  456 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw  456 (497)
                       ++++-..+.-+.++..|.-       ..+|.|-+.|..++
T Consensus       286 -~tfrrendRFW~laahP~l-------NLfAAgHDsGm~VF  318 (1202)
T KOG0292|consen  286 -QTFRRENDRFWILAAHPEL-------NLFAAGHDSGMIVF  318 (1202)
T ss_pred             -eeeeccCCeEEEEEecCCc-------ceeeeecCCceEEE
Confidence             8888888888999998842       22444444444777

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-31  Score=247.69  Aligned_cols=363  Identities=14%  Similarity=0.160  Sum_probs=282.7

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...|+|+.-+|+.-.||+|..||.|+||+...+.                       ...++.||.            .+
T Consensus        65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-----------------------~~~tfngHK------------~A  109 (888)
T KOG0306|consen   65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-----------------------ILITFNGHK------------AA  109 (888)
T ss_pred             cceEEEeeccCCcceEEEEecCceEEeeccCCCc-----------------------eeeeecccc------------cc
Confidence            3589999999999999999999999999998653                       367789999            99


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |+.+.|  +..|..|++||.|+.|.+||+-...-....             ..+...+....+.....++.+.+.  ++.
T Consensus       110 Vt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-------------~GHkd~iT~~~F~~~~~~lvS~sK--Ds~  172 (888)
T KOG0306|consen  110 VTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRL-------------RGHKDSITQALFLNGDSFLVSVSK--DSM  172 (888)
T ss_pred             eEEEEE--cccCceEeecCCCccEEEEEeccceeeEEe-------------ecchHHHhHHhccCCCeEEEEecc--Cce
Confidence            999999  789999999999999999999654321110             112233444555555666666655  899


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-----------------------ce
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----------------------DQ  247 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-----------------------~~  247 (497)
                      +++||++..   .|..+. -.|...++.+++.+  +.++++ .|+.+++|++...                       ++
T Consensus       173 iK~WdL~tq---hCf~Th-vd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R  246 (888)
T KOG0306|consen  173 IKFWDLETQ---HCFETH-VDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR  246 (888)
T ss_pred             EEEEecccc---eeeeEE-ecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCc
Confidence            999999954   577776 78999999999987  677777 9999999998110                       00


Q ss_pred             --------------------------------------------------------------------------------
Q 010933          248 --------------------------------------------------------------------------------  247 (497)
Q Consensus       248 --------------------------------------------------------------------------------  247 (497)
                                                                                                      
T Consensus       247 ~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~  326 (888)
T KOG0306|consen  247 EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSF  326 (888)
T ss_pred             eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEE
Confidence                                                                                            


Q ss_pred             --------e----------eEEeecC----C---------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933          248 --------C----------FNIVDMK----P---------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  296 (497)
Q Consensus       248 --------~----------~~~~~~~----~---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  296 (497)
                              .          +..+.+.    +         -++.+|...|++++++.+. ..+ ..+..+.|++|+..+.
T Consensus       327 dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~-~Sga~~SikiWn~~t~  404 (888)
T KOG0306|consen  327 DVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILL-ASGAGESIKIWNRDTL  404 (888)
T ss_pred             EEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eee-eecCCCcEEEEEccCc
Confidence                    0          0000000    0         2345788889999999885 444 4445678999999988


Q ss_pred             cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccC
Q 010933          297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  375 (497)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (497)
                      +.+    +.++.               +.+.+..|-|.+++++.|.. |.+.+||+.. ...+.++++|++.+       
T Consensus       405 kci----RTi~~---------------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaI-------  457 (888)
T KOG0306|consen  405 KCI----RTITC---------------GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAI-------  457 (888)
T ss_pred             cee----EEecc---------------ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccce-------
Confidence            776    77766               67899999999999999977 9999999987 88899999999865       


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc----ceEEEe-------ccCcceeeeEeecCCCcccccccc
Q 010933          376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GGITVE-------AGKNENRKPILQAAPRARRSSLSN  444 (497)
Q Consensus       376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~----~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~  444 (497)
                              ++++.+||++.+++||.|.+|++||..-...    ....+.       .-...+.++.++|  |+++     
T Consensus       458 --------Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--dgk~-----  522 (888)
T KOG0306|consen  458 --------WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--DGKL-----  522 (888)
T ss_pred             --------eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--CCcE-----
Confidence                    7999999999999999999999999743211    111111       2346788999999  8888     


Q ss_pred             eeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          445 LTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       445 l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      ||.+--|.. +++  .+-.....+.+|.-||.+|..+||++.+++|+ +.+++||-
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG  578 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG  578 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence            999999998 888  44455667889999999999999999999999 77799994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.4e-33  Score=239.14  Aligned_cols=234  Identities=13%  Similarity=0.281  Sum_probs=196.2

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ....|+|+.+..  ..+++|..|++|+|||..+-                       .++..+.||+            +
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~-----------------------~c~~~L~GHt------------G  238 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSL-----------------------ECLKILTGHT------------G  238 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccH-----------------------HHHHhhhcCC------------C
Confidence            457899999864  46899999999999998753                       5688899999            9


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.|+.|    +.+.+++|+.|.+|++||+++++...                                           
T Consensus       239 SVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~-------------------------------------------  271 (499)
T KOG0281|consen  239 SVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLN-------------------------------------------  271 (499)
T ss_pred             cEEeeec----cceEEEecCCCceEEEEeccCCchhh-------------------------------------------
Confidence            9999999    45699999999999999999988443                                           


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                       ++ -+|...|..+.|+.  .+++++ .|.+|.+||+.... ....    ...+.+|.+.|..+
T Consensus       272 -----------------tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-~it~----rrVLvGHrAaVNvV  326 (499)
T KOG0281|consen  272 -----------------TL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-DITL----RRVLVGHRAAVNVV  326 (499)
T ss_pred             -----------------HH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-HHHH----HHHHhhhhhheeee
Confidence                             33 68999999999973  488888 99999999998433 1111    02367999999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~l  348 (497)
                      .|+.   +++++++.|.+|++|++.+++.+    +++.+             |...|.|+.+.  |+++++| +|.+|++
T Consensus       327 dfd~---kyIVsASgDRTikvW~~st~efv----Rtl~g-------------HkRGIAClQYr--~rlvVSGSSDntIRl  384 (499)
T KOG0281|consen  327 DFDD---KYIVSASGDRTIKVWSTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDNTIRL  384 (499)
T ss_pred             cccc---ceEEEecCCceEEEEeccceeee----hhhhc-------------ccccceehhcc--CeEEEecCCCceEEE
Confidence            9974   68999999999999999998766    55544             66789888874  8899998 5699999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      ||+.. +++++.+.+|+..+               .++.|  |.+.|++|+.||+|+|||+..+.
T Consensus       385 wdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  385 WDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             Eeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEeccccc
Confidence            99997 99999999999976               68888  67889999999999999998763

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-33  Score=228.30  Aligned_cols=278  Identities=15%  Similarity=0.190  Sum_probs=241.3

Q ss_pred             cCCcceEEEEEcC---CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h~~~I~~i~~sp---~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      +|+.+|-.++|||   +|-+|++++.||.-.+-+-+++                       ..+.+|.||.         
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-----------------------dwigtfeghk---------   59 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-----------------------DWIGTFEGHK---------   59 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-----------------------CcEEeeeccC---------
Confidence            6999999999996   8999999999998888777776                       4589999999         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         +.|++...  +.+...-++++.|-+.++||.-+|.....                                      
T Consensus        60 ---gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs--------------------------------------   96 (334)
T KOG0278|consen   60 ---GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS--------------------------------------   96 (334)
T ss_pred             ---cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh--------------------------------------
Confidence               99999998  56767788889999999999988774432                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                              -.|..-|.+++|+.|.+.|++| .+..+++||++.....       |..+.+|...
T Consensus        97 ------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-------p~E~~ghtg~  145 (334)
T KOG0278|consen   97 ------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-------PKEISGHTGG  145 (334)
T ss_pred             ------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-------chhhcCCCCc
Confidence                                    3778889999999999999999 9999999999854433       3457899999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  345 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~  345 (497)
                      |..+.|.... +.|++++.|+.||+||.+++..+    +.++.              ..+++++.++++|++|..+..+.
T Consensus       146 Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~ilTia~gss  206 (334)
T KOG0278|consen  146 IRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRILTIAYGSS  206 (334)
T ss_pred             ceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEEEEecCce
Confidence            9999999887 89999999999999999999876    44444              36799999999999999988799


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      |.+||..+ ..+++.++.....                .+.+.+|+...+++|++|..++.||..+++++....++|.+|
T Consensus       207 V~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp  269 (334)
T KOG0278|consen  207 VKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP  269 (334)
T ss_pred             eEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence            99999987 7778887766553                589999999999999999999999999998775556999999


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      |.++.|+|  +|..     -|+|+.||. ++|
T Consensus       270 VhcVrFSP--dGE~-----yAsGSEDGTirlW  294 (334)
T KOG0278|consen  270 VHCVRFSP--DGEL-----YASGSEDGTIRLW  294 (334)
T ss_pred             eEEEEECC--CCce-----eeccCCCceEEEE
Confidence            99999999  6766     899999999 999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.8e-33  Score=233.33  Aligned_cols=293  Identities=16%  Similarity=0.235  Sum_probs=235.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +....+.|..|||||+||++|+.||.|-+|+..+|+.   ++.++            |.-...|.-|+            
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl---rKDLk------------YQAqd~fMMmd------------  263 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL---RKDLK------------YQAQDNFMMMD------------  263 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchh---hhhhh------------hhhhcceeecc------------
Confidence            4467889999999999999999999999999999875   22221            11222233444            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+|.|+.|  +.|..++++|+.||.|++|.+.+|.                                             
T Consensus       264 ~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~---------------------------------------------  296 (508)
T KOG0275|consen  264 DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQ---------------------------------------------  296 (508)
T ss_pred             cceEEEee--cccHHHhhccCcCCcEEEEEEecch---------------------------------------------
Confidence            99999999  6899999999999999999999888                                             


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     |++.|-..|+..|+++.|+.|+..++++ .|.++++--+. .+++++.       +.+|++.|+.
T Consensus       297 ---------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKE-------frGHsSyvn~  353 (508)
T KOG0275|consen  297 ---------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKE-------FRGHSSYVNE  353 (508)
T ss_pred             ---------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHH-------hcCccccccc
Confidence                           4444446999999999999999999998 99999999999 6667664       8899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEe-cCeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~~i  346 (497)
                      +.|.++| +.+++++.||+|++|+..+.+..    ..|..           .+..-+|+.+..-|.. ..++++. .+++
T Consensus       354 a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrsntv  417 (508)
T KOG0275|consen  354 ATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRSNTV  417 (508)
T ss_pred             eEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence            9999999 99999999999999999998765    33332           1113568888887754 4555554 4999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  426 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  426 (497)
                      ++.+++  ++.++.+......-          .-  ..+.+.||.|.++++.++|+.++.|.+.+|.. ..++..|...+
T Consensus       418 ~imn~q--GQvVrsfsSGkREg----------Gd--Fi~~~lSpkGewiYcigED~vlYCF~~~sG~L-E~tl~VhEkdv  482 (508)
T KOG0275|consen  418 YIMNMQ--GQVVRSFSSGKREG----------GD--FINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-ERTLPVHEKDV  482 (508)
T ss_pred             EEEecc--ceEEeeeccCCccC----------Cc--eEEEEecCCCcEEEEEccCcEEEEEEeecCce-eeeeecccccc
Confidence            999986  88888886543321          11  14789999999999999999999999999854 48999999988


Q ss_pred             eeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      -.++-.|-.       ..+|+=+.||. ++|.
T Consensus       483 IGl~HHPHq-------NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  483 IGLTHHPHQ-------NLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccCccc-------chhhhhcccchhhhcC
Confidence            888888742       24788889998 8883

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=233.91  Aligned_cols=288  Identities=14%  Similarity=0.215  Sum_probs=245.1

Q ss_pred             CcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccc
Q 010933           85 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  164 (497)
Q Consensus        85 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (497)
                      |.+.....+.+|.            .+|+.+-|+  |+-..+++++.|++|++||..++++...                
T Consensus        96 pRp~l~~~l~g~r------------~~vt~v~~h--p~~~~v~~as~d~tikv~D~~tg~~e~~----------------  145 (406)
T KOG0295|consen   96 PRPNLVQKLAGHR------------SSVTRVIFH--PSEALVVSASEDATIKVFDTETGELERS----------------  145 (406)
T ss_pred             CCCCchhhhhccc------------cceeeeeec--cCceEEEEecCCceEEEEEccchhhhhh----------------
Confidence            4444555566677            889999994  6777888999999999999999885332                


Q ss_pred             cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933          165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  243 (497)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~  243 (497)
                                                                   +++|...+.+++|+..|+.++++ .|-.+++||..
T Consensus       146 ---------------------------------------------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  146 ---------------------------------------------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             ---------------------------------------------hhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence                                                         38999999999999999999999 88889999998


Q ss_pred             cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      ...++++.       +.+|+..|.++.|-|.| .++++++.|..|+.|++.++-.+    +.|..             |.
T Consensus       181 ~~~~c~ks-------~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv----~t~~~-------------h~  235 (406)
T KOG0295|consen  181 TFFRCIKS-------LIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCV----KTFPG-------------HS  235 (406)
T ss_pred             HHHHHHHH-------hcCcccceeeEEEEecC-CeeeecccccceeEEecccceeE----EeccC-------------ch
Confidence            54555554       77999999999999999 99999999999999999998765    55555             56


Q ss_pred             ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-----------
Q 010933          324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----------  391 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----------  391 (497)
                      ..+..+..+.||.++|+++ +.++++|-+.+ +.+...++.|+..+               -+++|.|.           
T Consensus       236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~v---------------Eci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPV---------------ECIAWAPESSYPSISEATG  299 (406)
T ss_pred             HhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhccccce---------------EEEEecccccCcchhhccC
Confidence            7899999999999999986 49999999987 88888899999876               35666542           


Q ss_pred             ----CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCccc
Q 010933          392 ----GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL  464 (497)
Q Consensus       392 ----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~  464 (497)
                          ++++.+++.|++|++||+.++.. ..++.+|.+.|+.++|+|  .|++     +++..+|+. ++|  ...+-...
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~af~p--~Gky-----i~ScaDDktlrvwdl~~~~cmk~  371 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGVAFSP--GGKY-----ILSCADDKTLRVWDLKNLQCMKT  371 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeeeEEcC--CCeE-----EEEEecCCcEEEEEeccceeeec
Confidence                36999999999999999999944 599999999999999999  7888     999999999 999  45555566


Q ss_pred             ccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          465 SYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       465 ~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      ...|+.-|++++|+.+.+++++|+ +-..++|.
T Consensus       372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             cCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            678899999999999999999999 55588885

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.1e-32  Score=242.28  Aligned_cols=275  Identities=20%  Similarity=0.287  Sum_probs=206.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|+..|+++++.|.|..+++|+.|..|++||+.+...                +.+.++.+.....|.            
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda----------------s~~~fr~l~P~E~h~------------  216 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA----------------SMRSFRQLQPCETHQ------------  216 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccc----------------cchhhhccCcccccc------------
Confidence            4678999999999999999999999999999987542                122333344444555            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                        |++++|  ++.+..|++.+....++|+|-.+.+.....+.                                      
T Consensus       217 --i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG--------------------------------------  254 (641)
T KOG0772|consen  217 --INSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG--------------------------------------  254 (641)
T ss_pred             --cceeee--cCCCCeEEEEecCcceeEEccCCceeeeeecc--------------------------------------
Confidence              999999  67888999999999999999887665554322                                      


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                       .-.|-|+..          .++|...+++.+|+|..+ .++++ .||++++||+...+...+++..++  ..+..-+++
T Consensus       255 -DQYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~Rv~~t  321 (641)
T KOG0772|consen  255 -DQYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGKRVPVT  321 (641)
T ss_pred             -chhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCcccCce
Confidence             122222222          279999999999999544 55666 999999999997666666654443  335567889


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc--cccEEEEeeCCCEEEEE-ecC
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR-DYM  344 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~-~~~  344 (497)
                      .++|+|+| .+||+|..||.|.+|+.+....- ....+-             ..|..  .|++++||++|++|++- .|+
T Consensus       322 sC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk-------------~AH~~g~~Itsi~FS~dg~~LlSRg~D~  386 (641)
T KOG0772|consen  322 SCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR-PVMKVK-------------DAHLPGQDITSISFSYDGNYLLSRGFDD  386 (641)
T ss_pred             eeecCCCc-chhhhcccCCceeeeecCCcccc-cceEee-------------eccCCCCceeEEEeccccchhhhccCCC
Confidence            99999999 99999999999999998553211 111121             23444  89999999999999995 569


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCcc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGSAG  415 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~vw~~~~~~~~  415 (497)
                      .+++||+++..+++....+-...-             +-+.++|||+.++|++|..      .|++.+||..+-+.+
T Consensus       387 tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v  450 (641)
T KOG0772|consen  387 TLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV  450 (641)
T ss_pred             ceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence            999999998778887776554332             1268999999999999875      567899998766443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.1e-31  Score=255.07  Aligned_cols=281  Identities=21%  Similarity=0.308  Sum_probs=229.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.++.|  +++|+.+++++.|+.+++|+...... .                                          
T Consensus       160 ~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~-~------------------------------------------  194 (456)
T KOG0266|consen  160 PSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS-N------------------------------------------  194 (456)
T ss_pred             CceEEEEE--cCCCCeEEEccCCCcEEEeecccccc-h------------------------------------------
Confidence            78999999  68999999999999999999955441 0                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     .++.+ .+|...|.+++|+|+++.++++ .|++|++||+...+..+++       +.+|...|++
T Consensus       195 ---------------~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~-------l~gH~~~v~~  251 (456)
T KOG0266|consen  195 ---------------LLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-------LKGHSTYVTS  251 (456)
T ss_pred             ---------------hhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE-------ecCCCCceEE
Confidence                           11111 6899999999999999999999 9999999999646677776       7899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ +++++|+.|+.|++||+++++..    +.+..             |...|++++|++++++|++++ |+.|+
T Consensus       252 ~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~~l~~-------------hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  252 VAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----RKLKG-------------HSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             EEecCCC-CEEEEecCCCcEEEEeccCCeEE----Eeeec-------------cCCceEEEEECCCCCEEEEcCCCccEE
Confidence            9999999 99999999999999999997655    55555             668999999999999999986 59999


Q ss_pred             EEecCCCCc--eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          348 LWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       348 lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      +||+.+ +.  ++..+..+....             .++.+.|+|++++|++++.|+.+++||+..+... ..+.+|...
T Consensus       314 vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-~~~~~~~~~  378 (456)
T KOG0266|consen  314 VWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-GTYTGHSNL  378 (456)
T ss_pred             EEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-eeecccCCc
Confidence            999997 66  456776666541             1268999999999999999999999999988554 788888776


Q ss_pred             eeee-EeecCCCcccccccceeEeeccCc-eec--CCCCCccccccc-CCCeEEEEEecCCCEEEEEe---CCceEEEe
Q 010933          426 NRKP-ILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNL-SSKLLHLAWHPTTNLIACAN---GNSLFFHY  496 (497)
Q Consensus       426 v~~~-~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~-~~~i~~l~~~p~~~~la~~~---~~~~~i~~  496 (497)
                      +++. .......+.+     +.+|+.|+. ++|  ..+.......+| ...+..++|+|..+++++++   +..+.+|.
T Consensus       379 ~~~~~~~~~~~~~~~-----i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  379 VRCIFSPTLSTGGKL-----IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             ceeEecccccCCCCe-----EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            4222 1111124555     999999999 999  344556667788 88999999999999999998   45577774

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.6e-33  Score=244.58  Aligned_cols=285  Identities=21%  Similarity=0.363  Sum_probs=232.9

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      +.+..+.||.            ..|+++.|.| ..+.+|++++.|+.|+||++.+..                       
T Consensus       205 k~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~-----------------------  248 (503)
T KOG0282|consen  205 KLSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDR-----------------------  248 (503)
T ss_pred             hheeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecCc-----------------------
Confidence            4566788998            8999999964 368899999999999999997622                       


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                          .|+++| .+|..+|.+++|+++|..++++ .|+.|++||.+ ++
T Consensus       249 ------------------------------------~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG  290 (503)
T KOG0282|consen  249 ------------------------------------RCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TG  290 (503)
T ss_pred             ------------------------------------ceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccc-cc
Confidence                                                366776 8999999999999999999998 99999999999 56


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      ++...+        .....++++.|+|++++.|++|+.|+.|+.||+|+++.+    +.+..             |-+.|
T Consensus       291 ~~~~~f--------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~-------------hLg~i  345 (503)
T KOG0282|consen  291 QVLSRF--------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR-------------HLGAI  345 (503)
T ss_pred             eEEEEE--------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-------------hhhhe
Confidence            666542        244678999999999899999999999999999999765    33333             45789


Q ss_pred             cEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee---ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          327 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      ..+.|-++|+.+++++| ++++||+.+. ..+++.+.   .|..                 .++..+|++++++.-+.|+
T Consensus       346 ~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~hsm-----------------P~~~~~P~~~~~~aQs~dN  407 (503)
T KOG0282|consen  346 LDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMHTM-----------------PCLTLHPNGKWFAAQSMDN  407 (503)
T ss_pred             eeeEEccCCceEeeeccCccEEEEEcCC-CccchhhcchhhccC-----------------cceecCCCCCeehhhccCc
Confidence            99999999999999866 9999999986 44444332   2322                 3799999999999999999


Q ss_pred             cEEEEEcCCCC--cceEEEeccCccee--eeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEE
Q 010933          403 LLRIFSHGVGS--AGGITVEAGKNENR--KPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHL  475 (497)
Q Consensus       403 ~i~vw~~~~~~--~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l  475 (497)
                      .|.+|.+...-  .....+++|..+-.  .+.|+|  |+.+     |++|+.+|. .+|  ++..+...+..|++++..+
T Consensus       408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v  480 (503)
T KOG0282|consen  408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV  480 (503)
T ss_pred             eEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence            99999976532  22466788876654  455666  8888     999999999 999  6777788888999999999


Q ss_pred             EEecCC-CEEEEEe-CCceEEEe
Q 010933          476 AWHPTT-NLIACAN-GNSLFFHY  496 (497)
Q Consensus       476 ~~~p~~-~~la~~~-~~~~~i~~  496 (497)
                      .|||.. ..+|+|+ ++.+++|.
T Consensus       481 ~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  481 DWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EecCCCcceeEecccCceeEecC
Confidence            999986 4577777 66699984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.4e-30  Score=237.27  Aligned_cols=281  Identities=20%  Similarity=0.332  Sum_probs=228.3

Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                      .++++|.            ++|.+++|  +++++++++++.|+.+++|++.+++...                       
T Consensus         3 ~~~~~h~------------~~i~~~~~--~~~~~~l~~~~~~g~i~i~~~~~~~~~~-----------------------   45 (289)
T cd00200           3 RTLKGHT------------GGVTCVAF--SPDGKLLATGSGDGTIKVWDLETGELLR-----------------------   45 (289)
T ss_pred             hHhcccC------------CCEEEEEE--cCCCCEEEEeecCcEEEEEEeeCCCcEE-----------------------
Confidence            4567888            89999999  6788999999999999999998655211                       


Q ss_pred             ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceee
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  249 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  249 (497)
                                                           . +..|...+..+.|+|+++.++++ .++.|++|+++ .++..
T Consensus        46 -------------------------------------~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~~   86 (289)
T cd00200          46 -------------------------------------T-LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGECV   86 (289)
T ss_pred             -------------------------------------E-EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC-cccce
Confidence                                                 1 15777888999999999999998 89999999998 33333


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  329 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  329 (497)
                      ..       +..|...+.++.|+|++ .++++++.|+.|++||+++++..    ..+.             .|...+.++
T Consensus        87 ~~-------~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~~~-------------~~~~~i~~~  141 (289)
T cd00200          87 RT-------LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TTLR-------------GHTDWVNSV  141 (289)
T ss_pred             EE-------EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EEec-------------cCCCcEEEE
Confidence            32       55788899999999997 88888888999999999866533    2222             245689999


Q ss_pred             EEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          330 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       330 ~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      .|+|++.+++++. ++.|++||++. ++.+..+..|...+               .++.|+|+++.|++++.|+.|++||
T Consensus       142 ~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d  205 (289)
T cd00200         142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEV---------------NSVAFSPDGEKLLSSSSDGTIKLWD  205 (289)
T ss_pred             EEcCcCCEEEEEcCCCcEEEEEccc-cccceeEecCcccc---------------ceEEECCCcCEEEEecCCCcEEEEE
Confidence            9999999999987 79999999986 77788888776543               6899999999999999999999999


Q ss_pred             cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcccccccCCCeEEEEEecCCCEEE
Q 010933          409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIA  485 (497)
Q Consensus       409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~~~~~~~~~i~~l~~~p~~~~la  485 (497)
                      +..++. ...+..|..++..+.+.+.  +.+     +++++.++. .+|..  +........+...|.+++|+|++++|+
T Consensus       206 ~~~~~~-~~~~~~~~~~i~~~~~~~~--~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         206 LSTGKC-LGTLRGHENGVNSVAFSPD--GYL-----LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             CCCCce-ecchhhcCCceEEEEEcCC--CcE-----EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence            988644 3677789999999999983  555     777776888 99933  344555567888999999999999999


Q ss_pred             EEeCC-ceEEEe
Q 010933          486 CANGN-SLFFHY  496 (497)
Q Consensus       486 ~~~~~-~~~i~~  496 (497)
                      +++.+ .+.+|.
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            98855 588884

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-30  Score=216.47  Aligned_cols=268  Identities=18%  Similarity=0.275  Sum_probs=210.5

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      -.+.|+++.|+++|.+|++++.|.+++|||...+++                       ++++..++            -
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----------------------~~ti~skk------------y   57 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----------------------VKTINSKK------------Y   57 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----------------------eeEeeccc------------c
Confidence            367999999999999999999999999999998854                       66666666            7


Q ss_pred             ceeEEEEEecCCCCEEEEEe--CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          111 KINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      .|..++|. .++ ..++.++  .|.+|+.-++.+.+                                            
T Consensus        58 G~~~~~Ft-h~~-~~~i~sStk~d~tIryLsl~dNk--------------------------------------------   91 (311)
T KOG1446|consen   58 GVDLACFT-HHS-NTVIHSSTKEDDTIRYLSLHDNK--------------------------------------------   91 (311)
T ss_pred             cccEEEEe-cCC-ceEEEccCCCCCceEEEEeecCc--------------------------------------------
Confidence            78889996 333 3444444  58899999888766                                            


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                      .++.| .||...|++++.+|-+..++++ .|++|++||++ ..++...+         +...-.
T Consensus        92 ----------------ylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~~~~p  144 (311)
T KOG1446|consen   92 ----------------YLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NLSGRP  144 (311)
T ss_pred             ----------------eEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ecCCCc
Confidence                            44444 9999999999999999999999 99999999999 55555542         222335


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i  346 (497)
                      .++|+|+| -++|++...+.|++||+|.-..-  ....+.. .         .+.....+.|.|||||++|+.+++ +.+
T Consensus       145 i~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~~s~~  211 (311)
T KOG1446|consen  145 IAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTNASFI  211 (311)
T ss_pred             ceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeCCCcE
Confidence            67899999 88998888889999999874211  0122221 0         012357899999999999999876 899


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-cCcc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNE  425 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~  425 (497)
                      ++.|.-. |....++..+.....          +.  .+.+|+||++++++|+.||+|++|+++++..+ ..+++ +..+
T Consensus       212 ~~lDAf~-G~~~~tfs~~~~~~~----------~~--~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~~~~~  277 (311)
T KOG1446|consen  212 YLLDAFD-GTVKSTFSGYPNAGN----------LP--LSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-AVLRGPNGGP  277 (311)
T ss_pred             EEEEccC-CcEeeeEeeccCCCC----------cc--eeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-eEecCCCCCC
Confidence            9999976 888888888765421          11  37999999999999999999999999999776 55555 8999


Q ss_pred             eeeeEeec
Q 010933          426 NRKPILQA  433 (497)
Q Consensus       426 v~~~~~~~  433 (497)
                      +.++.|.|
T Consensus       278 ~~~~~fnP  285 (311)
T KOG1446|consen  278 VSCVRFNP  285 (311)
T ss_pred             ccccccCC
Confidence            99999988

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-31  Score=230.64  Aligned_cols=287  Identities=13%  Similarity=0.133  Sum_probs=226.3

Q ss_pred             ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      ..+.++.|+            +.|+-+.|  +++|++||+++.|.+..+|++......                      
T Consensus       216 t~qil~~ht------------dEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~----------------------  259 (519)
T KOG0293|consen  216 TWQILQDHT------------DEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHF----------------------  259 (519)
T ss_pred             hhhhHhhCC------------CcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcce----------------------
Confidence            345677888            77999999  789999999999999999988543311                      


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  247 (497)
                                                         +..+++ .+|..+|..+.|+||.+++++| .+..+.+||+. ++.
T Consensus       260 -----------------------------------kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-tgd  302 (519)
T KOG0293|consen  260 -----------------------------------KLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-TGD  302 (519)
T ss_pred             -----------------------------------eeeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCC-cch
Confidence                                               123333 7999999999999999999998 88889999999 454


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      ....+      -.++...+.+++|.||| ..+++|+.|+.|..||+.... .    ..|++-.            ...|.
T Consensus       303 ~~~~y------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~----~~W~gvr------------~~~v~  358 (519)
T KOG0293|consen  303 LRHLY------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-L----GNWEGVR------------DPKVH  358 (519)
T ss_pred             hhhhc------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-h----hcccccc------------cceeE
Confidence            54432      23466889999999999 999999999999999997543 2    4555411            13589


Q ss_pred             EEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          328 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       328 ~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                      ++++.+||+++++. .|..|++|+..+ ......+..+..                +++++.|.|++++++.-.+..|++
T Consensus       359 dlait~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  359 DLAITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHL  421 (519)
T ss_pred             EEEEcCCCcEEEEEecccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEE
Confidence            99999999998775 679999999875 444444444443                279999999999999999999999


Q ss_pred             EEcCCCCcceEEEeccCcc--eeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCC
Q 010933          407 FSHGVGSAGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT  481 (497)
Q Consensus       407 w~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~  481 (497)
                      ||++.. .+...+.||+..  +-.-+|.-. +..+     +++|++|++ +||  ..+.++..+.+|.+.|++++|+|..
T Consensus       422 WDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~-~~~f-----iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  422 WDLEEN-KLVRKYFGHKQGHFIIRSCFGGG-NDKF-----IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD  494 (519)
T ss_pred             eecchh-hHHHHhhcccccceEEEeccCCC-Ccce-----EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence            999965 444677777643  444456553 4445     899999999 999  6777888999999999999999976


Q ss_pred             -CEEEEEeCCc-eEEEe
Q 010933          482 -NLIACANGNS-LFFHY  496 (497)
Q Consensus       482 -~~la~~~~~~-~~i~~  496 (497)
                       .++|+|++|+ +.||.
T Consensus       495 p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  495 PEMFASASDDGTIRIWG  511 (519)
T ss_pred             HHHhhccCCCCeEEEec
Confidence             4588888655 99995

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-30  Score=212.66  Aligned_cols=276  Identities=18%  Similarity=0.271  Sum_probs=217.5

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ..+|...|.+++|+.+|..||+|+.|+++++|+++..+.                     ..-....+|.          
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------~~~~~~~gh~----------   64 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------RKELVYRGHT----------   64 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------hhhhcccCCC----------
Confidence            345889999999999999999999999999999987633                     3334467888          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        +.|-.++|.| +....|++++.|.+|++||++.+++....                                      
T Consensus        65 --~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i--------------------------------------  103 (313)
T KOG1407|consen   65 --DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARI--------------------------------------  103 (313)
T ss_pred             --cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEe--------------------------------------
Confidence              8899999986 55669999999999999999988754321                                      


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                             .. ...-.-+.|+|+|++++.+ .|..|.+.|.+ ..+....        ......+
T Consensus       104 -----------------------~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r-~~~~~~~--------~~~~~e~  150 (313)
T KOG1407|consen  104 -----------------------ET-KGENINITWSPDGEYIAVGNKDDRITFIDAR-TYKIVNE--------EQFKFEV  150 (313)
T ss_pred             -----------------------ec-cCcceEEEEcCCCCEEEEecCcccEEEEEec-ccceeeh--------hccccee
Confidence                                   11 2222357899999999999 99999999998 3443332        2344567


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      ..++|+.++ .+++.....|.|.|.....-+.+    ..             +..|.....|+.|+|+|+|+|+|+ |..
T Consensus       151 ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv----~s-------------i~AH~snCicI~f~p~GryfA~GsADAl  212 (313)
T KOG1407|consen  151 NEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV----QS-------------IKAHPSNCICIEFDPDGRYFATGSADAL  212 (313)
T ss_pred             eeeeecCCC-CEEEEecCCceEEEEeccccccc----cc-------------cccCCcceEEEEECCCCceEeeccccce
Confidence            788999777 77777777899999888754332    33             345667889999999999999985 699


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      +.+||++. --+++.+..++-++               +.++||.||++||+||+|..|-|=++++|..+ ..+      
T Consensus       213 vSLWD~~E-LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-~eI------  269 (313)
T KOG1407|consen  213 VSLWDVDE-LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGDRV-WEI------  269 (313)
T ss_pred             eeccChhH-hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCCeE-EEe------
Confidence            99999985 77888888887765               78999999999999999999999999998554 111      


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCC
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN  490 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~  490 (497)
                                                               .++++-..++|||...+||.++++
T Consensus       270 -----------------------------------------~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  270 -----------------------------------------PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             -----------------------------------------eccCCceeEEecCCCceeeEEecC
Confidence                                                     223366688999999999988843

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-30  Score=212.68  Aligned_cols=295  Identities=13%  Similarity=0.128  Sum_probs=229.8

Q ss_pred             CCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        25 ~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      ++...+|..+++-+.|+.+|.+|.+++.|....+|-..+|+.                       +.++.||+       
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------------lGty~GHt-------   52 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------------LGTYDGHT-------   52 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------------eeeecCCC-------
Confidence            455667999999999999999999999999999999877754                       88999999       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           +.|+++..  +.+.+++++|+.|.++++||+++|+++...+.+....              ...+...+.+++..
T Consensus        53 -----GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk--------------~~~F~~~gn~~l~~  111 (327)
T KOG0643|consen   53 -----GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK--------------RVDFSFGGNLILAS  111 (327)
T ss_pred             -----ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE--------------EEeeccCCcEEEEE
Confidence                 99999999  6788999999999999999999999776544433211              11122222222222


Q ss_pred             c---cccCcceEEEeecCCc----cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933          185 E---WTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  256 (497)
Q Consensus       185 ~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  256 (497)
                      .   .--.+.+.++++....    ..+|...+ ..+.+.++.+-|.|-++.|++| .||.|.+||++++.+.+..     
T Consensus       112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s-----  185 (327)
T KOG0643|consen  112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS-----  185 (327)
T ss_pred             ehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec-----
Confidence            1   1113367788887543    55666665 5677899999999999999999 9999999999955555543     


Q ss_pred             CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                        -+.|...|+.+.++|+. .++++++.|.+-++||.++-+.+    +.+..              ..++++.+++|...
T Consensus       186 --~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP~~d  244 (327)
T KOG0643|consen  186 --DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISPLLD  244 (327)
T ss_pred             --hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceecccccc
Confidence              56799999999999999 99999999999999999987665    66655              46899999999887


Q ss_pred             EEEEEe--c-CeEEEEecCCC-----------CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          337 HLLSRD--Y-MNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       337 ~l~~~~--~-~~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      .++.|.  + ..|.-=+.+.+           .+.+.++++|-+++               ++++|+|+|+..++|++||
T Consensus       245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGGEDG  309 (327)
T KOG0643|consen  245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGGEDG  309 (327)
T ss_pred             eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc---------------ceeEECCCCcccccCCCCc
Confidence            777653  2 33333232220           34577788999876               7999999999999999999


Q ss_pred             cEEEEEcCCC
Q 010933          403 LLRIFSHGVG  412 (497)
Q Consensus       403 ~i~vw~~~~~  412 (497)
                      .|++.-++..
T Consensus       310 ~VR~h~Fd~~  319 (327)
T KOG0643|consen  310 YVRLHHFDSN  319 (327)
T ss_pred             eEEEEEeccc
Confidence            9999877643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.9e-30  Score=221.61  Aligned_cols=301  Identities=16%  Similarity=0.191  Sum_probs=229.0

Q ss_pred             ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT   91 (497)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (497)
                      ++|+..+  ++ ...+..+|++.|+|+.||.+|.+||||+.+|.|+||+..++..                       ..
T Consensus        89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-----------------------~~  142 (399)
T KOG0296|consen   89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-----------------------QW  142 (399)
T ss_pred             EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-----------------------EE
Confidence            4677776  44 6677889999999999999999999999999999999998754                       22


Q ss_pred             cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933           92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  171 (497)
Q Consensus        92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (497)
                      .+...-            +.|.=+.|+  |.+..|++|+.||.+-+|.+.++...+                        
T Consensus       143 ~~~~e~------------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~k------------------------  184 (399)
T KOG0296|consen  143 KLDQEV------------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCK------------------------  184 (399)
T ss_pred             Eeeccc------------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceee------------------------
Confidence            222122            447778885  678899999999999999998743221                        


Q ss_pred             cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933          172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  250 (497)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  250 (497)
                                                          . +.+|..++++-.|.|+|+.++++ .||+|++||..+. +.+.
T Consensus       185 ------------------------------------v-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~  226 (399)
T KOG0296|consen  185 ------------------------------------V-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLH  226 (399)
T ss_pred             ------------------------------------E-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeE
Confidence                                                1 27999999999999999999999 9999999999944 4443


Q ss_pred             EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933          251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      .+      -.......+++.++..+ ..++.|+.++.+++-+..+|+.+.    ....     ........+...+.++.
T Consensus       227 ~~------~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-----~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  227 KI------TQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-----TVPELKPSQEELDESVE  290 (399)
T ss_pred             Ee------cccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-----CCccccccchhhhhhhh
Confidence            32      11123456788888888 899999999999999988886542    1111     00111112334444444


Q ss_pred             E---eeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          331 F---ANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       331 ~---s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                      +   +..-.+.|+|+ ||+|.|||+.. .++...+. |+..+               +++.|-+ ..+|++++.+|.|+.
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c~-he~~V---------------~~l~w~~-t~~l~t~c~~g~v~~  352 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHICE-HEDGV---------------TKLKWLN-TDYLLTACANGKVRQ  352 (399)
T ss_pred             hcccccccchhhcccccceEEEEeccc-chhheecc-CCCce---------------EEEEEcC-cchheeeccCceEEe
Confidence            4   44556778885 59999999985 55554444 44433               6899998 789999999999999


Q ss_pred             EEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       407 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ||.++|+. ..++.+|..+|..++++|  +.+.     +++++.|+. +++
T Consensus       353 wDaRtG~l-~~~y~GH~~~Il~f~ls~--~~~~-----vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  353 WDARTGQL-KFTYTGHQMGILDFALSP--QKRL-----VVTVSDDNTALVF  395 (399)
T ss_pred             eeccccce-EEEEecCchheeEEEEcC--CCcE-----EEEecCCCeEEEE
Confidence            99999955 499999999999999999  6666     899999988 776

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=9.5e-31  Score=218.75  Aligned_cols=310  Identities=16%  Similarity=0.192  Sum_probs=235.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|..++.+.+|||||.++|+|+.|-+|+|.|++......   . -.++. .-.+-.....+.+|-.|.           
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~-~~em~-~~~~qa~hPvIRTlYDH~-----------  172 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---K-PKEMI-SGDTQARHPVIRTLYDHV-----------  172 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---c-hhhhc-cCCcccCCceEeehhhcc-----------
Confidence            3689999999999999999999999999999997321100   0 00000 000000123466777888           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|+++.|+  |....|++++.|++|+++|+.....++-.                                       
T Consensus       173 -devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~---------------------------------------  210 (430)
T KOG0640|consen  173 -DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAF---------------------------------------  210 (430)
T ss_pred             -Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHH---------------------------------------
Confidence             889999995  67789999999999999999765533321                                       


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        +.  -....+|.+++|+|.|.+|+.| +-..+++||++ .-+++..-    ..-.+|.+.|+
T Consensus       211 ------------------K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsa----nPd~qht~ai~  265 (430)
T KOG0640|consen  211 ------------------KV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSA----NPDDQHTGAIT  265 (430)
T ss_pred             ------------------HH--hhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeec----Cccccccccee
Confidence                              11  1335589999999999999999 88999999999 55555431    23568999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc-cccccEEEEeeCCCEEEEE-ecCe
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSR-DYMN  345 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~-~~~~  345 (497)
                      ++.+++.+ ++.++++.||.|++||--+++.+    ..+..            .| ...|.+..|..+|+|++++ -|..
T Consensus       266 ~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~------------AH~gsevcSa~Ftkn~kyiLsSG~DS~  328 (430)
T KOG0640|consen  266 QVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGN------------AHGGSEVCSAVFTKNGKYILSSGKDST  328 (430)
T ss_pred             EEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHh------------hcCCceeeeEEEccCCeEEeecCCcce
Confidence            99999999 99999999999999998887765    33332            11 2579999999999999986 4699


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcceEEEeccCc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      +++|.+.+ ++++.++.+....-          .....+...|.....|++.-.+ .+.+.-||.++...+...--+|.+
T Consensus       329 vkLWEi~t-~R~l~~YtGAg~tg----------rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~  397 (430)
T KOG0640|consen  329 VKLWEIST-GRMLKEYTGAGTTG----------RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG  397 (430)
T ss_pred             eeeeeecC-CceEEEEecCCccc----------chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC
Confidence            99999997 89999987653210          0000145677777778776665 578999999999887777789999


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +++.+.-+|.       .+.|.+++.|-. +.|
T Consensus       398 a~R~i~HSP~-------~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  398 AVRWIVHSPV-------EPAFMTCSDDFRARFW  423 (430)
T ss_pred             CceEEEeCCC-------CCceeeecccceeeee
Confidence            9999999995       344899999988 999

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.4e-29  Score=238.84  Aligned_cols=300  Identities=14%  Similarity=0.157  Sum_probs=211.7

Q ss_pred             hhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc
Q 010933           15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ   94 (497)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (497)
                      ||..+|+....-+  .+-..|.....++++..+++++.+.....|+..++... +  ++...+.     .+  .....+.
T Consensus         5 k~rh~~g~~~k~~--~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-~--~~~~~G~-----~~--~~~~~l~   72 (493)
T PTZ00421          5 RFRHTQGVPARPD--RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-L--KHTDYGK-----LA--SNPPILL   72 (493)
T ss_pred             cccccccccCCcc--cceeccccccccCCCCCcEeECCceEEEEEecCCceEE-e--ecccccc-----CC--CCCceEe
Confidence            5677777644333  36678888888899777788888888888887654320 0  0000000     00  1122367


Q ss_pred             ccCcccccccccccccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccC
Q 010933           95 SHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  173 (497)
Q Consensus        95 ~h~~~~~~~~~~~~~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (497)
                      +|.            +.|++++|+  | ++.+|++++.|++|++||+..+.....                         
T Consensus        73 GH~------------~~V~~v~fs--P~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------------------------  113 (493)
T PTZ00421         73 GQE------------GPIIDVAFN--PFDPQKLFTASEDGTIMGWGIPEEGLTQN-------------------------  113 (493)
T ss_pred             CCC------------CCEEEEEEc--CCCCCEEEEEeCCCEEEEEecCCCccccc-------------------------
Confidence            888            999999994  5 678999999999999999976432110                         


Q ss_pred             CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEE
Q 010933          174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNI  251 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~  251 (497)
                                                  ...++..+ .+|...|.+++|+|++ +.|++| .|+.|++||++ .++....
T Consensus       114 ----------------------------~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~~~~~  163 (493)
T PTZ00421        114 ----------------------------ISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEV  163 (493)
T ss_pred             ----------------------------cCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCeEEEE
Confidence                                        01133333 7999999999999975 688888 99999999999 4444443


Q ss_pred             eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc-cccEEE
Q 010933          252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIK  330 (497)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~  330 (497)
                             +.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+    ..+..             |.+ ....+.
T Consensus       164 -------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~-------------H~~~~~~~~~  218 (493)
T PTZ00421        164 -------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEA-------------HASAKSQRCL  218 (493)
T ss_pred             -------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEec-------------CCCCcceEEE
Confidence                   67899999999999999 99999999999999999987644    33333             222 245678


Q ss_pred             EeeCCCEEEEEe-----cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcE
Q 010933          331 FANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLL  404 (497)
Q Consensus       331 ~s~~g~~l~~~~-----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i  404 (497)
                      |.+++..+++++     ++.|++||++...+++.....+....              +....|++++++|++++ .|+.|
T Consensus       219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCCCeE
Confidence            888877776632     48999999986455555444332211              13567899999999888 49999


Q ss_pred             EEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933          405 RIFSHGVGSAGGITVEAGKNENRKPILQAA  434 (497)
Q Consensus       405 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (497)
                      ++||+.++......-..+..+++.+++.|.
T Consensus       285 riwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        285 RCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            999999875543322345567788888774

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.4e-29  Score=245.39  Aligned_cols=314  Identities=13%  Similarity=0.221  Sum_probs=226.9

Q ss_pred             CcceEEEEEcCCCCEEEEee--cCCeEEEEEecCCccc-cchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNH-ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~--~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +..|.+|+.+|||..+|||+  .|+.++||+.+.-... ..++.            --.+.+.+...|.           
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~------------~l~k~l~~m~~h~-----------   69 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE------------NLPKHLCTMDDHD-----------   69 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc------------ccchhheeecccc-----------
Confidence            55799999999999999999  9999999997642210 00000            0013455566777           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|+|++|  ++||++||+||.|+.|.||.....-.......              .                      
T Consensus        70 -~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs--------------~----------------------  110 (942)
T KOG0973|consen   70 -GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFGS--------------T----------------------  110 (942)
T ss_pred             -CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccccc--------------c----------------------
Confidence             99999999  79999999999999999998764110000000              0                      


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                      ++.      ..-...++...+ .+|...|..++|+|++.+++++ .|++|.+||..+ ....++       +.+|...|.
T Consensus       111 g~~------~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~v-------l~~H~s~VK  175 (942)
T KOG0973|consen  111 GGA------KNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKV-------LRGHQSLVK  175 (942)
T ss_pred             ccc------cccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeee-------eeccccccc
Confidence            000      000123455555 8999999999999999999999 999999999994 466665       889999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-----
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----  342 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-----  342 (497)
                      .+.|+|-| ++||+-+.|++|++|++.+-...    +.+..+-+ .      .....-+..+.|||||++|++..     
T Consensus       176 Gvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~----k~It~pf~-~------~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  176 GVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE----KSITKPFE-E------SPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             ceEECCcc-CeeeeecCCceEEEEEcccceee----Eeeccchh-h------CCCcceeeecccCCCcCeecchhhccCC
Confidence            99999999 99999999999999997664333    22222110 0      11134688999999999999852     


Q ss_pred             cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-----CC------------EEEEEeCCCcEE
Q 010933          343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL------------HFATGSYSNLLR  405 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~------------~l~s~~~dg~i~  405 (497)
                      ...+.|.+-.+ .+.-..+-+|..++               ..+.|+|.     .+            .+|+|+.|+.|.
T Consensus       244 ~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  244 KSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             cceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence            26888888765 77778888998865               57889871     11            577899999999


Q ss_pred             EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEE
Q 010933          406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA  485 (497)
Q Consensus       406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la  485 (497)
                      ||.....+.+                                              ....--+...|.+|+|+|||-.|.
T Consensus       308 VW~T~~~RPl----------------------------------------------~vi~~lf~~SI~DmsWspdG~~Lf  341 (942)
T KOG0973|consen  308 VWNTALPRPL----------------------------------------------FVIHNLFNKSIVDMSWSPDGFSLF  341 (942)
T ss_pred             EEecCCCCch----------------------------------------------hhhhhhhcCceeeeeEcCCCCeEE
Confidence            9997554332                                              011112355899999999998888


Q ss_pred             EEe-CCceEEEe
Q 010933          486 CAN-GNSLFFHY  496 (497)
Q Consensus       486 ~~~-~~~~~i~~  496 (497)
                      +++ ++.++++.
T Consensus       342 acS~DGtV~~i~  353 (942)
T KOG0973|consen  342 ACSLDGTVALIH  353 (942)
T ss_pred             EEecCCeEEEEE
Confidence            888 55577653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=7.3e-29  Score=203.34  Aligned_cols=285  Identities=14%  Similarity=0.179  Sum_probs=219.1

Q ss_pred             cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933           92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  171 (497)
Q Consensus        92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (497)
                      .++||+            .+++.+.|  +.+|.+|++++.|.++.+|-..+|+.                          
T Consensus         5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGer--------------------------   44 (327)
T KOG0643|consen    5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGER--------------------------   44 (327)
T ss_pred             ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCce--------------------------
Confidence            367898            99999999  78999999999999999998876663                          


Q ss_pred             cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933          172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  250 (497)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  250 (497)
                                                        +-+| .+|++.|+++..+.+.+.+++| .|.++++||++ .++.+.
T Consensus        45 ----------------------------------lGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la   88 (327)
T KOG0643|consen   45 ----------------------------------LGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLA   88 (327)
T ss_pred             ----------------------------------eeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEE
Confidence                                              3334 8999999999999999999999 99999999999 455554


Q ss_pred             EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-----CCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      .+        ....+|..+.|+++| ++++.+..     .+.|.++|++....-          ....++...+..+...
T Consensus        89 ~~--------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~----------~~s~ep~~kI~t~~sk  149 (327)
T KOG0643|consen   89 TW--------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSD----------IDSEEPYLKIPTPDSK  149 (327)
T ss_pred             Ee--------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhh----------hcccCceEEecCCccc
Confidence            43        345789999999999 87777654     468999999854311          0011111112234578


Q ss_pred             ccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933          326 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  404 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i  404 (497)
                      ++.+.|.|-+++|++|. +|.|.+||++++.+.+...+.|...+               +++.+++|..++++++.|.+-
T Consensus       150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dtta  214 (327)
T KOG0643|consen  150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTA  214 (327)
T ss_pred             eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccc
Confidence            99999999999999995 59999999998557777777787754               699999999999999999999


Q ss_pred             EEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec----------------CCCCCccccccc
Q 010933          405 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN----------------SSSGHHELSYNL  468 (497)
Q Consensus       405 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw----------------~~~~~~~~~~~~  468 (497)
                      ++||+.+-+.+ +++ ....|+++.+++|..+..      +..|+.+-..+=                ...+......+|
T Consensus       215 kl~D~~tl~v~-Kty-~te~PvN~aaisP~~d~V------ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH  286 (327)
T KOG0643|consen  215 KLVDVRTLEVL-KTY-TTERPVNTAAISPLLDHV------ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH  286 (327)
T ss_pred             eeeeccceeeE-EEe-eecccccceecccccceE------EecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence            99999987333 333 345799999999964432      233333222221                222445567799


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCc-eEE
Q 010933          469 SSKLLHLAWHPTTNLIACANGNS-LFF  494 (497)
Q Consensus       469 ~~~i~~l~~~p~~~~la~~~~~~-~~i  494 (497)
                      -++|++++|||+|+..++|+.|+ +.+
T Consensus       287 FGPINsvAfhPdGksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  287 FGPINSVAFHPDGKSYSSGGEDGYVRL  313 (327)
T ss_pred             ccCcceeEECCCCcccccCCCCceEEE
Confidence            99999999999999999999776 444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.8e-29  Score=219.07  Aligned_cols=262  Identities=16%  Similarity=0.260  Sum_probs=200.2

Q ss_pred             CCcceEEEEEcCCCCE-EEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~-lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      ..+.|++++|||...+ +|+.+ .-.+.||+..+...                       .+++.-..            
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~-----------------------~k~~srFk------------   68 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSV-----------------------RKTFSRFK------------   68 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhh-----------------------hhhHHhhc------------
Confidence            3479999999996543 34433 34799999876432                       23333333            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|+++.|  ..||++|++|...|.|+++|+.+.....                                          
T Consensus        69 ~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR------------------------------------------  104 (487)
T KOG0310|consen   69 DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILR------------------------------------------  104 (487)
T ss_pred             cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHH------------------------------------------
Confidence            77999999  5799999999999999999966533222                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        . +.+|+.++..+.|+|+++ .+++| +|+.+++||+. +... +.      .+.+|++.|+
T Consensus       105 ------------------~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v-~~------~l~~htDYVR  157 (487)
T KOG0310|consen  105 ------------------Q-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYV-QA------ELSGHTDYVR  157 (487)
T ss_pred             ------------------H-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEE-EE------EecCCcceeE
Confidence                              1 279999999999999555 55667 89999999999 3333 32      3789999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  347 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~  347 (497)
                      +.+|+|..++++++|+.||.|++||++....     .+.+.            .|..+|..+.+-|.|..+++++...++
T Consensus       158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el------------nhg~pVe~vl~lpsgs~iasAgGn~vk  220 (487)
T KOG0310|consen  158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL------------NHGCPVESVLALPSGSLIASAGGNSVK  220 (487)
T ss_pred             eeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEEe------------cCCCceeeEEEcCCCCEEEEcCCCeEE
Confidence            9999998768999999999999999997631     22322            245789999999999999999889999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||+.++++.+..+..|...+               +|+.+..++..|++|+-|+.+++||+.+-+.+ ..+ .-.+||.
T Consensus       221 VWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv-~s~-~~~~pvL  283 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV-HSW-KYPGPVL  283 (487)
T ss_pred             EEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEEEccceEEE-Eee-eccccee
Confidence            999997777777777677654               89999999999999999999999997655222 222 2334555


Q ss_pred             eeEeec
Q 010933          428 KPILQA  433 (497)
Q Consensus       428 ~~~~~~  433 (497)
                      +++++|
T Consensus       284 siavs~  289 (487)
T KOG0310|consen  284 SIAVSP  289 (487)
T ss_pred             eEEecC
Confidence            555555

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=2.3e-29  Score=209.72  Aligned_cols=265  Identities=14%  Similarity=0.185  Sum_probs=213.6

Q ss_pred             cccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccc
Q 010933           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYK   90 (497)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (497)
                      -++|...+.  ..+....-+|.++|..+.|.+|+..|++++.|.+|+.||.++++.                       .
T Consensus        71 I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~-----------------------~  125 (338)
T KOG0265|consen   71 IVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR-----------------------I  125 (338)
T ss_pred             EEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee-----------------------e
Confidence            346775442  333344458999999999999999999999999999999999854                       7


Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                      ..+++|.            .-|+++.-+ ...-.++.+++.|+++++||++.....++                      
T Consensus       126 rk~k~h~------------~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----------------------  170 (338)
T KOG0265|consen  126 RKHKGHT------------SFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKT----------------------  170 (338)
T ss_pred             ehhcccc------------ceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhc----------------------
Confidence            7788998            778888732 23345666788999999999997664332                      


Q ss_pred             ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceee
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  249 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  249 (497)
                                                              ......++++.|..++..+.+| -|+.|++||++ .+...
T Consensus       171 ----------------------------------------~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~  209 (338)
T KOG0265|consen  171 ----------------------------------------FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGL  209 (338)
T ss_pred             ----------------------------------------cccceeEEEEEecccccceeeccccCceeeeccc-cCcce
Confidence                                                    2335578999999999999999 99999999998 44455


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  329 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  329 (497)
                      .+       +.+|.++|+.+..+|+| .++.+-+.|.++++||++........++++.+|.-..         ......+
T Consensus       210 ~~-------lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf---------eknlL~c  272 (338)
T KOG0265|consen  210 YT-------LSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF---------EKNLLKC  272 (338)
T ss_pred             EE-------eecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhh---------hhhccee
Confidence            54       78999999999999999 9999999999999999987654444456666632111         1235678


Q ss_pred             EEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          330 KFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       330 ~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      +|+|++..+.+| .|..+++||... ...+..+.+|.+.+               ..+.|+|...+|.+++.|.+|++=+
T Consensus       273 swsp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsv---------------n~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  273 SWSPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSV---------------NEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             eccCCCCccccccccceEEEeeccc-ccEEEEcCCcceeE---------------EEeeecCCCcEEEEeccCceeEeec
Confidence            999999999998 469999999975 78999999999875               6899999999999999999998744


Q ss_pred             c
Q 010933          409 H  409 (497)
Q Consensus       409 ~  409 (497)
                      +
T Consensus       337 i  337 (338)
T KOG0265|consen  337 I  337 (338)
T ss_pred             c
Confidence            3

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.2e-30  Score=208.53  Aligned_cols=243  Identities=19%  Similarity=0.337  Sum_probs=200.4

Q ss_pred             CcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      .+.+..++|+++ .+.+++++.||+++|||+...                      ..++..++.|.            .
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----------------------s~Pi~~~kEH~------------~  105 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----------------------SKPIHKFKEHK------------R  105 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCC----------------------CcchhHHHhhh------------h
Confidence            678899999995 467888899999999995432                      24688899999            7


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.++.|.+ .+++.++++|-|++|++|+....+                                              
T Consensus       106 EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~----------------------------------------------  138 (311)
T KOG0277|consen  106 EVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPN----------------------------------------------  138 (311)
T ss_pred             heEEecccc-ccceeEEeeccCCceEeecCCCCc----------------------------------------------
Confidence            799999963 567788889999999999987655                                              


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                    .++++ .+|...|+...|+| .+++++++ .|+.+++||++..++.+.        ++.|...|.+
T Consensus       139 --------------Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~Eil~  195 (311)
T KOG0277|consen  139 --------------SVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNSEILC  195 (311)
T ss_pred             --------------ceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccceeEe
Confidence                          33344 89999999999999 67788888 999999999997776554        4678899999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEec-CeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i  346 (497)
                      +.|+....+++++|+.|+.|+.||+++-+.     .+++           +.+|.-.|..++|||.. .+||+++. -++
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~e-----------L~gh~~AVRkvk~Sph~~~lLaSasYDmT~  259 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLFE-----------LNGHGLAVRKVKFSPHHASLLASASYDMTV  259 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhccc-----ccee-----------ecCCceEEEEEecCcchhhHhhhccccceE
Confidence            999987768999999999999999997642     1222           35677899999999975 56777765 999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~  409 (497)
                      ||||.......+.+...|...+               ..+.|++ +..++|+++.|..++||+.
T Consensus       260 riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  260 RIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence            9999986677888888888765               5788887 5779999999999999984

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.9e-30  Score=206.91  Aligned_cols=282  Identities=20%  Similarity=0.239  Sum_probs=217.4

Q ss_pred             EEEEEcC-CCCEEEEee-------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           36 SAIEFDK-TGDYLAVGD-------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        36 ~~i~~sp-~g~~lasg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .++.||| -.++||.+.       ..|++.|.+...++-                       +.+++.-+          
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-----------------------i~e~~s~d----------   58 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-----------------------IQECQSYD----------   58 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCC-----------------------eEEEEeee----------
Confidence            6789999 233444432       358899999864321                       23332222          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      -++.+..++|+++. ...+++++.||++++||+....                                           
T Consensus        59 ~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s-------------------------------------------   94 (311)
T KOG0277|consen   59 TEDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMPS-------------------------------------------   94 (311)
T ss_pred             cccceeEeeecCCC-cceEEEEecCceEEEeccCCCC-------------------------------------------
Confidence            22789999997533 4578889999999999943221                                           


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                      .++..+ +.|...|.++.|++ +++.++++ -|++|++|+.. .++.+.+       +.+|...
T Consensus        95 ----------------~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~  149 (311)
T KOG0277|consen   95 ----------------KPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSC  149 (311)
T ss_pred             ----------------cchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccE
Confidence                            244444 89999999999998 56677777 99999999998 4555554       7899999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ec
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DY  343 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~  343 (497)
                      |+..+|+|..+++++++|.|+.+++||++.....    ..++.             |...|.++.|+.-. ..+++| .|
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~~i~a-------------h~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----MSIEA-------------HNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCCce----eEEEe-------------ccceeEeecccccCCcEEEecCCC
Confidence            9999999998899999999999999999864322    22443             55789999999754 566676 46


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                      +.|+.||+++-..++..+.+|.-.+               +.+.|||. ...||+++.|-+++|||...+.....+..-|
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H  277 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH  277 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence            9999999998788999999998764               89999996 4689999999999999999777777788889


Q ss_pred             CcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      ..-+..+.+++-..+ .     +|+.+=|.. +||+
T Consensus       278 tEFv~g~Dws~~~~~-~-----vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  278 TEFVCGLDWSLFDPG-Q-----VASTGWDELLYVWN  307 (311)
T ss_pred             ceEEeccccccccCc-e-----eeecccccceeeec
Confidence            999999999986333 3     688887777 8874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.8e-29  Score=216.70  Aligned_cols=299  Identities=15%  Similarity=0.183  Sum_probs=228.1

Q ss_pred             ccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          103 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       103 ~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                      +..+.|++.|.++.-  .  ++.+++++.||.+++||..+...                                     
T Consensus        99 l~~~~hdDWVSsv~~--~--~~~IltgsYDg~~riWd~~Gk~~-------------------------------------  137 (423)
T KOG0313|consen   99 LQCFLHDDWVSSVKG--A--SKWILTGSYDGTSRIWDLKGKSI-------------------------------------  137 (423)
T ss_pred             cccccchhhhhhhcc--c--CceEEEeecCCeeEEEecCCceE-------------------------------------
Confidence            344555688888876  2  67999999999999999875432                                     


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCc
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  258 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  258 (497)
                                              .++ .+|.++|.+++|.-   ....|+++ .|.++++|.++.+....+..    ..
T Consensus       138 ------------------------~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~  188 (423)
T KOG0313|consen  138 ------------------------KTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KV  188 (423)
T ss_pred             ------------------------EEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hH
Confidence                                    222 79999999888843   33357887 99999999988444333221    12


Q ss_pred             cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc-----cc---ccceecccccccCCccccccccccccEEE
Q 010933          259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-----DH---SARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      ..+|...|.+++..++| ..+++|+.|..|++|+..+...-     ..   .....+.......+...+.+|..+|.++.
T Consensus       189 ~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~  267 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV  267 (423)
T ss_pred             hcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence            35999999999999999 99999999999999993321100     00   00011111222334456789999999999


Q ss_pred             EeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          331 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       331 ~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      |++.+..+-++-|.+|+.||+.+ +..+.++.+....                +++..+|..++|++|+.|..|++||.+
T Consensus       268 w~d~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  268 WSDATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             EcCCCceEeecccceEEEEEeec-ccceeeeecCcce----------------eEeecccccceeeecCCCCceeecCCC
Confidence            99854444444579999999998 8888888776654                689999999999999999999999998


Q ss_pred             CCC--cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec---CCCCCcccccccCCCeEEEEEecCCCEE
Q 010933          411 VGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTNLI  484 (497)
Q Consensus       411 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~~l  484 (497)
                      ++.  .+..++-+|.+.|..+.++|. +...     |++|+.|+. ++|   .+..++....+|..+|.++.|+. +.+|
T Consensus       331 ~~~gs~v~~s~~gH~nwVssvkwsp~-~~~~-----~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~I  403 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHKNWVSSVKWSPT-NEFQ-----LVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLI  403 (423)
T ss_pred             CCCCceeEEeeecchhhhhheecCCC-CceE-----EEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceE
Confidence            753  457889999999999999997 6666     899999999 999   44557888899999999999984 5567


Q ss_pred             EEEe-CCceEEEe
Q 010933          485 ACAN-GNSLFFHY  496 (497)
Q Consensus       485 a~~~-~~~~~i~~  496 (497)
                      ++|+ ++.++||.
T Consensus       404 vSGGaD~~l~i~~  416 (423)
T KOG0313|consen  404 VSGGADNKLRIFK  416 (423)
T ss_pred             EeccCcceEEEec
Confidence            7777 66799885

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-29  Score=227.79  Aligned_cols=275  Identities=14%  Similarity=0.178  Sum_probs=228.3

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+|.++.++  |...+++++-.+|.|.||+.++....+..                                        
T Consensus        14 dRVKsVd~H--PtePw~la~LynG~V~IWnyetqtmVksf----------------------------------------   51 (794)
T KOG0276|consen   14 DRVKSVDFH--PTEPWILAALYNGDVQIWNYETQTMVKSF----------------------------------------   51 (794)
T ss_pred             CceeeeecC--CCCceEEEeeecCeeEEEecccceeeeee----------------------------------------
Confidence            889999995  67789999999999999999886644321                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                           .-...+|.+..|-+.-+++++| +|..|++|+..+ ...++.       ++.|.+.|++
T Consensus        52 ---------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-~ekV~~-------FeAH~DyIR~  102 (794)
T KOG0276|consen   52 ---------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-GEKVKT-------FEAHSDYIRS  102 (794)
T ss_pred             ---------------------eecccchhhheeeeccceEEEecCCceEEEEeccc-ceeeEE-------eeccccceee
Confidence                                 3335578888898888999999 999999999994 445544       8899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe-cCeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~~~i  346 (497)
                      ++.+|.. .+++++|.|-.|++||.+.+-.+.   ++|             .+|...|++++|+|. .+.+|+++ |++|
T Consensus       103 iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~---qtf-------------eGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen  103 IAVHPTL-PYVLTSSDDMTIKLWDWENEWACE---QTF-------------EGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             eeecCCC-CeEEecCCccEEEEeeccCceeee---eEE-------------cCcceEEEEEEecCCCccceeeeeccccE
Confidence            9999998 899999999999999998754331   444             457789999999995 46788875 6999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      ++|.+.. ..+..++++|+..+               +++.+-+.  ..+|++|++|..|+|||.++...+ +++++|..
T Consensus       166 KVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-~TLeGHt~  228 (794)
T KOG0276|consen  166 KVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV-QTLEGHTN  228 (794)
T ss_pred             EEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchHHHH-HHhhcccc
Confidence            9999986 88999999999876               68998874  469999999999999999998666 99999999


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCc-eecCCC--CCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~--~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      .|..+.|.|.       .+.+++|++||. ++|+..  .....+.-.-..|.+++-++....+|+|.+.+..+.+
T Consensus       229 Nvs~v~fhp~-------lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  229 NVSFVFFHPE-------LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK  296 (794)
T ss_pred             cceEEEecCC-------CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence            9999999995       567999999999 999433  3333344445688999999999999999988866554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=9.3e-30  Score=216.77  Aligned_cols=290  Identities=14%  Similarity=0.210  Sum_probs=243.0

Q ss_pred             CCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccc
Q 010933           80 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  159 (497)
Q Consensus        80 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  159 (497)
                      .|..+..++....+.+|.            +.|.++++  .|.+++|++++.|++|+|||+.+++++..           
T Consensus       134 rPeWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt-----------  188 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT-----------  188 (460)
T ss_pred             CccccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence            466678899999999999            99999999  78899999999999999999999986543           


Q ss_pred             ccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 010933          160 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN  238 (497)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~  238 (497)
                                                                        +.+|-..|..+++++...+++++ .|+.|+
T Consensus       189 --------------------------------------------------ltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  189 --------------------------------------------------LTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             --------------------------------------------------ecchhheeeeeeecccCceEEEecCCCeeE
Confidence                                                              27899999999999999999998 999999


Q ss_pred             EEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccc
Q 010933          239 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  318 (497)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (497)
                      .||++ ..+.+.-       .-+|-..|++++.+|.- ..|++|+.|..+|+||+|+...+    .++.           
T Consensus       219 CwDLe-~nkvIR~-------YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~~l~-----------  274 (460)
T KOG0285|consen  219 CWDLE-YNKVIRH-------YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----HVLS-----------  274 (460)
T ss_pred             EEech-hhhhHHH-------hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----EEec-----------
Confidence            99999 4554443       67899999999999998 99999999999999999987644    4444           


Q ss_pred             cccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933          319 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  397 (497)
Q Consensus       319 ~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  397 (497)
                        +|..+|..+.+.|-...+++|+ |++|++||++. ++....+..|...+               ++++.+|....+|+
T Consensus       275 --GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fAS  336 (460)
T KOG0285|consen  275 --GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFAS  336 (460)
T ss_pred             --CCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhc
Confidence              4778999999998777788875 59999999997 88888888888754               78999999988998


Q ss_pred             EeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC---Cc--c---ccc
Q 010933          398 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG---HH--E---LSY  466 (497)
Q Consensus       398 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~---~~--~---~~~  466 (497)
                      ++.| .|+-|++..+..+ ..+.+|..-++.+....  |+      ++++|++.|. ..|  ..+.   ..  .   -..
T Consensus       337 as~d-nik~w~~p~g~f~-~nlsgh~~iintl~~ns--D~------v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl  406 (460)
T KOG0285|consen  337 ASPD-NIKQWKLPEGEFL-QNLSGHNAIINTLSVNS--DG------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL  406 (460)
T ss_pred             cCCc-cceeccCCccchh-hccccccceeeeeeecc--Cc------eEEEcCCceEEEEEecCcCcccccccccccCCcc
Confidence            8886 7899999998766 55999999999999877  33      3688988888 777  2221   11  1   122


Q ss_pred             ccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          467 NLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       467 ~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      ..+..|.+..|...|..|++|. +..|.+|.
T Consensus       407 ~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  407 ESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             ccccceeEEeecccCceEEeccCCcceEEEe
Confidence            4566899999999999999887 66799885

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.7e-30  Score=222.58  Aligned_cols=283  Identities=20%  Similarity=0.295  Sum_probs=222.8

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.+.+..+.|-++...|++|+.|..|++|+....+.                     ..+.++.|..            
T Consensus       173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~------------  219 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL------------  219 (459)
T ss_pred             ccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC------------
Confidence            4789999999999988999999999999999887642                     5577787777            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|+++.|  .+++.++++++.|+.+++|++...+....                                         
T Consensus       220 g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T-----------------------------------------  256 (459)
T KOG0288|consen  220 GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT-----------------------------------------  256 (459)
T ss_pred             CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh-----------------------------------------
Confidence            88999999  78999999999999999999998775443                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                          +.+|++.|+++.|......+++| .|.+|++||+. ...+.+.+      +.  ...+..
T Consensus       257 --------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l~--~S~cnD  307 (459)
T KOG0288|consen  257 --------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------LP--GSQCND  307 (459)
T ss_pred             --------------------hcccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------cc--cccccc
Confidence                                37999999999998877668899 99999999999 56666542      32  234455


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~  347 (497)
                      |+.+  . ..++++-.|++|++||.++....    ...+.              .+.|+++..+++|..|.+. -|..+.
T Consensus       308 I~~~--~-~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRDdtl~  366 (459)
T KOG0288|consen  308 IVCS--I-SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRDDTLK  366 (459)
T ss_pred             eEec--c-eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCCCcee
Confidence            5555  3 57899999999999999987654    34443              2579999999999877776 469999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +.|+++ ......+......           +..+.+.+.|||++.|+++||.||.|+||++.+++.+ ..+....    
T Consensus       367 viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-~~l~~s~----  429 (459)
T KOG0288|consen  367 VIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-KVLSLST----  429 (459)
T ss_pred             eeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCceEE-EEeccCC----
Confidence            999996 6666666544332           2222378999999999999999999999999998544 2222111    


Q ss_pred             eeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-CceEEE
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFH  495 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i~  495 (497)
                                                              ....|++++|+|.|..|++++. ....+|
T Consensus       430 ----------------------------------------s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  430 ----------------------------------------SNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ----------------------------------------CCcceEEEEEcCCCchhhcccCCcceEec
Confidence                                                    1116889999999999888884 446666

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=7.1e-28  Score=201.00  Aligned_cols=275  Identities=16%  Similarity=0.214  Sum_probs=212.3

Q ss_pred             CCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        31 h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      ..+.|.+++||| ...++++|+.||+||+|+++....                    +. -+....|+            
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------------~~-~ka~~~~~------------   72 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------------LV-PKAQQSHD------------   72 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCc--------------------cc-chhhhccC------------
Confidence            468999999999 566777999999999999987311                    01 13345566            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|.+++|  +.||..+++|+.|+.+++||+.+++...+                                         
T Consensus        73 ~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v-----------------------------------------  109 (347)
T KOG0647|consen   73 GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV-----------------------------------------  109 (347)
T ss_pred             CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee-----------------------------------------
Confidence            99999999  78999999999999999999999875442                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC--EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                           ..|..+|.++.|-+...  .|++| .|++|+.||.+ ....+.++.        ..+.+
T Consensus       110 ---------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~pv~t~~--------LPeRv  159 (347)
T KOG0647|consen  110 ---------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNPVATLQ--------LPERV  159 (347)
T ss_pred             ---------------------eecccceeEEEEecCCCcceeEecccccceeecccC-CCCeeeeee--------cccee
Confidence                                 68999999999976544  89999 99999999999 444554432        23556


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      +++..-  . .+++++..++.|.+|+++++....+   ..+.            ...-.+++++..+|....+.|+ +|.
T Consensus       160 Ya~Dv~--~-pm~vVata~r~i~vynL~n~~te~k---~~~S------------pLk~Q~R~va~f~d~~~~alGsiEGr  221 (347)
T KOG0647|consen  160 YAADVL--Y-PMAVVATAERHIAVYNLENPPTEFK---RIES------------PLKWQTRCVACFQDKDGFALGSIEGR  221 (347)
T ss_pred             eehhcc--C-ceeEEEecCCcEEEEEcCCCcchhh---hhcC------------cccceeeEEEEEecCCceEeeeecce
Confidence            666543  3 5788999999999999987643221   1111            1124689999999988778775 599


Q ss_pred             EEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933          346 LKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       346 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      +-+..+.. +  +.-.+++.|...-.      ..+.+++|.+++|+|.-..|+|+|.||++.+||-+.... ....+.|.
T Consensus       222 v~iq~id~-~~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s~~~~  293 (347)
T KOG0647|consen  222 VAIQYIDD-PNPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTSETHP  293 (347)
T ss_pred             EEEEecCC-CCccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhhhh-hhccCcCC
Confidence            99998875 4  55677888875321      123578889999999999999999999999999776544 47888999


Q ss_pred             cceeeeEeecCCCccc
Q 010933          424 NENRKPILQAAPRARR  439 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~  439 (497)
                      .+|.+..|..  +|.+
T Consensus       294 qpItcc~fn~--~G~i  307 (347)
T KOG0647|consen  294 QPITCCSFNR--NGSI  307 (347)
T ss_pred             CccceeEecC--CCCE
Confidence            9999999988  5655

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2e-28  Score=231.42  Aligned_cols=300  Identities=13%  Similarity=0.141  Sum_probs=191.8

Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc--CccccCC-CCCcccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK--NFMNEHN-PPSFAHGYHLE  185 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~  185 (497)
                      +++|+++.|  ++||+|||+||.|+.|+||.+...+...+......   +........+  .++.... ...........
T Consensus       267 ~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~---~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  267 KGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSS---CMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             CCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccc---hhhhhhhhccccCcccccccccccccccccc
Confidence            399999999  79999999999999999999976443222111100   0000000011  1111111 00000000000


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                      -.....+.+-+.......+++..| .+|.+.|.+++|+.++ +|+++ .|.+|+||++. .+.++++        ..|.+
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~--------F~Hnd  410 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKV--------FSHND  410 (712)
T ss_pred             ccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeE--------EecCC
Confidence            001111222222222345567776 8999999999999877 66666 99999999999 7778875        46999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  343 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-  343 (497)
                      -|+|++|+|...++|++|+.||.||||++...+..     .|..             ...-|++++|.|||++.+.|+. 
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avIGt~~  472 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVIGTFN  472 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEEEEec
Confidence            99999999987799999999999999999886543     2222             1257999999999999999987 


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                      |.+++|+... .++...+..+...-.       +...-.|+++.|.|. ...|++.+.|.+|+|||..+... ...+++.
T Consensus       473 G~C~fY~t~~-lk~~~~~~I~~~~~K-------k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l-v~KfKG~  543 (712)
T KOG0283|consen  473 GYCRFYDTEG-LKLVSDFHIRLHNKK-------KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL-VHKFKGF  543 (712)
T ss_pred             cEEEEEEccC-CeEEEeeeEeeccCc-------cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh-hhhhccc
Confidence            9999999974 666655544322110       001112479999974 34688899999999999976533 3666665


Q ss_pred             CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .+.-.....+-..++++     ++++++|.. ++|
T Consensus       544 ~n~~SQ~~Asfs~Dgk~-----IVs~seDs~VYiW  573 (712)
T KOG0283|consen  544 RNTSSQISASFSSDGKH-----IVSASEDSWVYIW  573 (712)
T ss_pred             ccCCcceeeeEccCCCE-----EEEeecCceEEEE
Confidence            44333222222224444     455554444 555

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.2e-30  Score=217.19  Aligned_cols=292  Identities=19%  Similarity=0.241  Sum_probs=227.9

Q ss_pred             chhhhhcCCCCCCCcccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933           14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE   92 (497)
Q Consensus        14 ~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (497)
                      -|+..+|.++..+..-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...                       .+...
T Consensus        48 tKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-----------------------~~~~~  104 (433)
T KOG0268|consen   48 TKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-----------------------ECIRT  104 (433)
T ss_pred             HHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-----------------------hhhhe
Confidence            3577888888888888999999999999976 78999999999999999875                       34788


Q ss_pred             ccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933           93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  172 (497)
Q Consensus        93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (497)
                      |++|.            +.|..|++.  .  ..+++++.|++|+.|.++..-                            
T Consensus       105 f~AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p----------------------------  140 (433)
T KOG0268|consen  105 FKAHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP----------------------------  140 (433)
T ss_pred             eeccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc----------------------------
Confidence            99999            999999993  3  689999999999999987521                            


Q ss_pred             CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEe
Q 010933          173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV  252 (497)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~  252 (497)
                                                       ++++  .-...+..+.-+..+..+++| .-.|.|||.+.. .+++. 
T Consensus       141 ---------------------------------~~ti--lg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~-~Pv~s-  182 (433)
T KOG0268|consen  141 ---------------------------------LHTI--LGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQRD-NPVSS-  182 (433)
T ss_pred             ---------------------------------ceee--ecccccccccccccccccccc-CceeeecccccC-Cccce-
Confidence                                             1111  112344555555566667766 335899998833 33332 


Q ss_pred             ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933          253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  332 (497)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  332 (497)
                            +.--.+.|.++.|+|.....|+++.+|+.|.+||++++..+.+....                  -.-+.++|+
T Consensus       183 ------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------------mRTN~Iswn  238 (433)
T KOG0268|consen  183 ------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------------MRTNTICWN  238 (433)
T ss_pred             ------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------------ccccceecC
Confidence                  33345789999999988678899999999999999998776432222                  245889999


Q ss_pred             eCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          333 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       333 ~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      |++-.+++|+ |..++.||++.-..++..+.+|...+               .++.|||.|+-+++||.|.+|+||.+..
T Consensus       239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             ccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCC
Confidence            9776666664 59999999998778888888888765               7999999999999999999999999987


Q ss_pred             CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +......-..--..|.++.++.  |.++     +.+|++|+. ++|
T Consensus       304 ~~SRdiYhtkRMq~V~~Vk~S~--Dsky-----i~SGSdd~nvRlW  342 (433)
T KOG0268|consen  304 GHSRDIYHTKRMQHVFCVKYSM--DSKY-----IISGSDDGNVRLW  342 (433)
T ss_pred             CcchhhhhHhhhheeeEEEEec--cccE-----EEecCCCcceeee
Confidence            7443222222234677889988  7888     999999999 999

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=9.3e-28  Score=221.29  Aligned_cols=416  Identities=12%  Similarity=0.115  Sum_probs=287.5

Q ss_pred             CcccCCcceEEEEEcCCCC---EEEEeecCCeEEEEEecCCccccchhhhhhhccc-CCCCCCccccc----------cc
Q 010933           27 EELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNHISRSELEKQMDF-TSTSHPEYRYK----------TE   92 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~---~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~   92 (497)
                      +.-+|++.|.+++|...+.   +||+++.|..||||.+.-+....   ..+++..- .+...|.+...          ..
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~---~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED---SNEREDSLTTLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc---ccccccccccccCCceeeeeeeEEEEEehhhh
Confidence            4457999999999997554   88999999999999886433100   00000000 11112222222          33


Q ss_pred             ccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933           93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  172 (497)
Q Consensus        93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (497)
                      +.||+            +.|+++.|  .|.+..|+++|.|.++.+|......-+.........      .....+.....
T Consensus       263 l~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe------~gg~a~GF~g~  322 (764)
T KOG1063|consen  263 LMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE------VGGSAGGFWGG  322 (764)
T ss_pred             hcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeec------ccccccceeeE
Confidence            45888            99999999  578889999999999999987665322222111111      00112345566


Q ss_pred             CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEE
Q 010933          173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI  251 (497)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  251 (497)
                      .++++..++.+-++  .|..++|.............. .+|...|.+++|.|.|++|++. .|.+-++|-.-..++....
T Consensus       323 lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHE  399 (764)
T KOG1063|consen  323 LWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHE  399 (764)
T ss_pred             EEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccceee
Confidence            66777776666666  778899984443333444444 8999999999999999999998 9999999865412222222


Q ss_pred             eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcc------c-----c--------------cccc-e
Q 010933          252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL------C-----D--------------HSAR-I  305 (497)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~-----~--------------~~~~-~  305 (497)
                      +    ...+-|...++|+++-+.. ..|++|.....+|+|+....-.      +     .              -..+ .
T Consensus       400 i----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~  474 (764)
T KOG1063|consen  400 I----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF  474 (764)
T ss_pred             e----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence            1    2356688899999999864 7899999999999998864200      0     0              0000 1


Q ss_pred             ecccccc----------c---C--------------------CccccccccccccEEEEeeCCCEEEEEe------cCeE
Q 010933          306 LRDAAES----------H---G--------------------SKSFFTEIIASISDIKFANDGQHLLSRD------YMNL  346 (497)
Q Consensus       306 ~~~~~~~----------~---~--------------------~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~~~i  346 (497)
                      +.+..+.          +   .                    ....+-+|...|.+++.+|+|+++|++.      ...|
T Consensus       475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI  554 (764)
T KOG1063|consen  475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI  554 (764)
T ss_pred             cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence            1000000          0   0                    0013468899999999999999999852      2689


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce---EEEeccC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGK  423 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~---~~~~~~~  423 (497)
                      ++|+..+ ....+.+.+|.-.+               +.++|||||++|++.|.|.++.+|+........   ..++.|.
T Consensus       555 ~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~Ht  618 (764)
T KOG1063|consen  555 RLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHT  618 (764)
T ss_pred             EEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccc
Confidence            9999986 77788899998865               799999999999999999999999986643332   3378999


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCc-eecCCCCC----c--ccccccCCCeEEEEEecC-----CCEEEEEeCC-
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----H--ELSYNLSSKLLHLAWHPT-----TNLIACANGN-  490 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~----~--~~~~~~~~~i~~l~~~p~-----~~~la~~~~~-  490 (497)
                      .-|+...++|  +...     |+|++.|+. ++|.....    +  .....+...|+.++|.|-     +..+|+|-.. 
T Consensus       619 RIIWdcsW~p--de~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G  691 (764)
T KOG1063|consen  619 RIIWDCSWSP--DEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG  691 (764)
T ss_pred             eEEEEcccCc--ccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEeccc
Confidence            9999999999  6665     999999999 99922221    1  146688999999999873     2356777744 


Q ss_pred             ceEEEe
Q 010933          491 SLFFHY  496 (497)
Q Consensus       491 ~~~i~~  496 (497)
                      .|++|.
T Consensus       692 eI~l~~  697 (764)
T KOG1063|consen  692 EIVLWR  697 (764)
T ss_pred             EEEEEe
Confidence            488885

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-28  Score=226.68  Aligned_cols=240  Identities=18%  Similarity=0.292  Sum_probs=203.8

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~  110 (497)
                      .+.|+++.|+++|++||+|..+|.|.|||....+.                       ...+.+ |.            .
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----------------------~~~~~~~h~------------~  261 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----------------------TRTLRGSHA------------S  261 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----------------------cccccCCcC------------c
Confidence            68999999999999999999999999999887643                       556666 77            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|-+++|  +  +..+.+|+.|+.|..+|++..+...                                           
T Consensus       262 rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~-------------------------------------------  294 (484)
T KOG0305|consen  262 RVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVV-------------------------------------------  294 (484)
T ss_pred             eeEEEec--c--CceEEEecCCCcEEEEEEecchhhh-------------------------------------------
Confidence            9999999  3  5688899999999999998766221                                           


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                      .+ +.+|...|..++|+++++.+++| .|+.+.|||.......+.        +..|.+.|.++
T Consensus       295 ----------------~~-~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aAVKA~  349 (484)
T KOG0305|consen  295 ----------------ST-LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAAVKAL  349 (484)
T ss_pred             ----------------hh-hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------EeccceeeeEe
Confidence                            11 27899999999999999999999 999999999963333333        67899999999


Q ss_pred             EEeCCCCcEEEEEe--CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE---ecC
Q 010933          270 EFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DYM  344 (497)
Q Consensus       270 ~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~~  344 (497)
                      +|+|-...+||+|+  .|+.|++||..++..+    .....              ...|..+.|++..+-|+++   +++
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecCCCCC
Confidence            99998778999975  4999999999998765    33332              2689999999998777764   348


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      .|.||+..+ .+.+..+.+|...+               ..++++|||..+++|+.|.++++|++-..
T Consensus       412 ~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  412 QITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence            999999987 88899999999875               68999999999999999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.1e-28  Score=228.63  Aligned_cols=276  Identities=14%  Similarity=0.200  Sum_probs=225.8

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+|..++|+  |...+++++-..|.|++||.+-+.++.                                          
T Consensus        10 sRvKglsFH--P~rPwILtslHsG~IQlWDYRM~tli~------------------------------------------   45 (1202)
T KOG0292|consen   10 SRVKGLSFH--PKRPWILTSLHSGVIQLWDYRMGTLID------------------------------------------   45 (1202)
T ss_pred             ccccceecC--CCCCEEEEeecCceeeeehhhhhhHHh------------------------------------------
Confidence            789999995  667799999999999999998766433                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                        . |..|.++|..++|+|++.++++| +|-.|++|+.. ..+++-+       +.+|-+.|+.
T Consensus        46 ------------------r-FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclft-------L~GHlDYVRt   98 (1202)
T KOG0292|consen   46 ------------------R-FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLFT-------LLGHLDYVRT   98 (1202)
T ss_pred             ------------------h-hhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehhh-------hccccceeEE
Confidence                              2 27999999999999999999999 99999999999 6667654       8899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      +.|++.. ..|+++|.|.+|+||+..+++.+    .++.+             |...|+|..|+|...++++++ |-+||
T Consensus        99 ~~FHhey-PWIlSASDDQTIrIWNwqsr~~i----avltG-------------HnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   99 VFFHHEY-PWILSASDDQTIRIWNWQSRKCI----AVLTG-------------HNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             eeccCCC-ceEEEccCCCeEEEEeccCCceE----EEEec-------------CceEEEeeccCCccceEEEecccceEE
Confidence            9999999 89999999999999999998765    55554             678999999999999999986 69999


Q ss_pred             EEecCCCCc----------------------------eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          348 LWDIRMDST----------------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       348 lwd~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      +||+.--.+                            ....+.+|...               |+-++|+|.-.+|++|+
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG---------------VNwaAfhpTlpliVSG~  225 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG---------------VNWAAFHPTLPLIVSGA  225 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc---------------cceEEecCCcceEEecC
Confidence            999852100                            01122333332               26799999999999999


Q ss_pred             CCCcEEEEEcCCCC-cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCc--ccccccCCCeEEE
Q 010933          400 YSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH--ELSYNLSSKLLHL  475 (497)
Q Consensus       400 ~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~--~~~~~~~~~i~~l  475 (497)
                      +|..|++|.+...+ -+.-+.++|.++|.++.|.|.  ..     .+.+.++|+. ++|......  .....-...-..+
T Consensus       226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~--q~-----lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l  298 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH--QD-----LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL  298 (1202)
T ss_pred             CcceeeEEEeccccceeehhhhcccCCcceEEecCc--cc-----eeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence            99999999987542 345678999999999999984  22     3788999999 999444332  2233455677889


Q ss_pred             EEecCCCEEEEEeCCceEEEe
Q 010933          476 AWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       476 ~~~p~~~~la~~~~~~~~i~~  496 (497)
                      +-||..+++|+|-++++.||.
T Consensus       299 aahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  299 AAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             EecCCcceeeeecCCceEEEE
Confidence            999999999999999998884

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=2.3e-29  Score=213.67  Aligned_cols=263  Identities=15%  Similarity=0.242  Sum_probs=213.8

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|+|+.+    |.+.+++|..|++|+|||..+-.+..                                          
T Consensus       198 kgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~------------------------------------------  231 (499)
T KOG0281|consen  198 KGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLK------------------------------------------  231 (499)
T ss_pred             CceEEEEe----cchhhhcccccCceEEeccccHHHHH------------------------------------------
Confidence            77999998    45689999999999999998766433                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                        ++ .+|++.|.|+.|.  .+.+++| .|.+|++||++ +++++++       +.+|...|..
T Consensus       232 ------------------~L-~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~t-------lihHceaVLh  282 (499)
T KOG0281|consen  232 ------------------IL-TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNT-------LIHHCEAVLH  282 (499)
T ss_pred             ------------------hh-hcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhH-------HhhhcceeEE
Confidence                              22 7999999999985  4589999 99999999999 6777765       7899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~  347 (497)
                      +.|+.   .++++++.|..|.+||+.....+ ...++             +.+|...|+.+.|+  .+|++++ +|.+|+
T Consensus       283 lrf~n---g~mvtcSkDrsiaVWdm~sps~i-t~rrV-------------LvGHrAaVNvVdfd--~kyIVsASgDRTik  343 (499)
T KOG0281|consen  283 LRFSN---GYMVTCSKDRSIAVWDMASPTDI-TLRRV-------------LVGHRAAVNVVDFD--DKYIVSASGDRTIK  343 (499)
T ss_pred             EEEeC---CEEEEecCCceeEEEeccCchHH-HHHHH-------------Hhhhhhheeeeccc--cceEEEecCCceEE
Confidence            99985   58999999999999999865421 11123             34577899999997  4699988 469999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +|++.+ ...++++.+|...+                 .+.-..++++++|+.|.+|++||+..|..+ ..+++|...|+
T Consensus       344 vW~~st-~efvRtl~gHkRGI-----------------AClQYr~rlvVSGSSDntIRlwdi~~G~cL-RvLeGHEeLvR  404 (499)
T KOG0281|consen  344 VWSTST-CEFVRTLNGHKRGI-----------------ACLQYRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVR  404 (499)
T ss_pred             EEeccc-eeeehhhhcccccc-----------------eehhccCeEEEecCCCceEEEEeccccHHH-HHHhchHHhhh
Confidence            999987 99999999999754                 333347899999999999999999998555 89999999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eecCC--CCC---------cccccccCCCeEEEEEecCCCEEEEEe-CCceEE
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGH---------HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  494 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~---------~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i  494 (497)
                      ++.|..    +.     +++|++||+ ++|..  +..         ......|++.|..+.|  |...+++++ ++.+.|
T Consensus       405 ciRFd~----kr-----IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILi  473 (499)
T KOG0281|consen  405 CIRFDN----KR-----IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILI  473 (499)
T ss_pred             heeecC----ce-----eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence            999954    33     899999999 99922  211         1235578889999998  455566666 888999


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |+
T Consensus       474 Wd  475 (499)
T KOG0281|consen  474 WD  475 (499)
T ss_pred             EE
Confidence            96

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.6e-26  Score=194.64  Aligned_cols=274  Identities=17%  Similarity=0.220  Sum_probs=214.5

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|+++.|  +++|.++++++.|.++++||..++++....                                        
T Consensus        15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti----------------------------------------   52 (311)
T KOG1446|consen   15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTI----------------------------------------   52 (311)
T ss_pred             CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEe----------------------------------------
Confidence            77999999  789999999999999999999988855432                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                           ..+...+..++|... ...+.+.  .|.+|+..++. ..+.+..       +.+|...|
T Consensus        53 ---------------------~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRY-------F~GH~~~V  103 (311)
T KOG1446|consen   53 ---------------------NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRY-------FPGHKKRV  103 (311)
T ss_pred             ---------------------ecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEE-------cCCCCceE
Confidence                                 344456667777544 4444444  69999999999 6667765       89999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~  345 (497)
                      .+++.+|-+ ..+++++.|++|++||+|..+..    ..+..               ..-..++|+|+|-++|++.. +.
T Consensus       104 ~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen  104 NSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             EEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCe
Confidence            999999999 99999999999999999965432    22322               34567899999999999976 69


Q ss_pred             EEEEecCCC-CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          346 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       346 i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      |++||++.- ..+..++.......          +  ..+.+.|||||++|+.+...+.+++.|.-+|. +..++..+..
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~----------~--ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~  230 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDE----------A--EWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPN  230 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCc----------c--ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccC
Confidence            999999864 45666665443211          1  12689999999999999999999999999985 5578877766


Q ss_pred             ce---eeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccc-cCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933          425 EN---RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLLHLAWHPTTNLIACANGNSLFFH  495 (497)
Q Consensus       425 ~v---~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~-~~~~i~~l~~~p~~~~la~~~~~~~~i~  495 (497)
                      .-   ...+|+|  ++++     +.+|++||. .+|  .++.......+ +..++.++.|+|...++|+++. .+-+|
T Consensus       231 ~~~~~~~a~ftP--ds~F-----vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-~l~fw  300 (311)
T KOG1446|consen  231 AGNLPLSATFTP--DSKF-----VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-NLVFW  300 (311)
T ss_pred             CCCcceeEEECC--CCcE-----EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-eEEEE
Confidence            54   5667888  8888     899999999 999  55555555566 5789999999999988888754 45555

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1e-27  Score=193.12  Aligned_cols=242  Identities=19%  Similarity=0.247  Sum_probs=198.7

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      +..+.+|+            ++|..++|  +-+|.+.++++.|++|++|+...+.                         
T Consensus        10 ~~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~-------------------------   50 (307)
T KOG0316|consen   10 LSILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGA-------------------------   50 (307)
T ss_pred             ceeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccc-------------------------
Confidence            45677788            99999999  7899999999999999999998776                         


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  248 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  248 (497)
                                                         ++++| .+|...|..++.+.|+..|++| .|..+.+||++ +++.
T Consensus        51 -----------------------------------liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv   93 (307)
T KOG0316|consen   51 -----------------------------------LIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKV   93 (307)
T ss_pred             -----------------------------------eeeee-cCCCceeeeccccccccccccCCCCceEEEEEcc-cCee
Confidence                                               45556 8999999999999999999998 99999999999 5555


Q ss_pred             eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      ...       +.+|.+.|..++|+.+. ..+++|+.|..+++||.|+...  ++++++..             -...|.+
T Consensus        94 ~Rr-------~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde-------------a~D~V~S  150 (307)
T KOG0316|consen   94 DRR-------FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE-------------AKDGVSS  150 (307)
T ss_pred             eee-------cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh-------------hcCceeE
Confidence            543       88999999999999998 9999999999999999997542  22233333             3467888


Q ss_pred             EEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933          329 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  407 (497)
Q Consensus       329 ~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw  407 (497)
                      +..+  +..|++| .||++|.||++. +....-+-+|.-                 ++++|++|++.++.++.|+++++.
T Consensus       151 i~v~--~heIvaGS~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLl  210 (307)
T KOG0316|consen  151 IDVA--EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLL  210 (307)
T ss_pred             EEec--ccEEEeeccCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeec
Confidence            8775  5667777 479999999996 776666655543                 699999999999999999999999


Q ss_pred             EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      |-++|+. ....++|.+.-..+.-........     +++|++||. .+|
T Consensus       211 Dk~tGkl-L~sYkGhkn~eykldc~l~qsdth-----V~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  211 DKETGKL-LKSYKGHKNMEYKLDCCLNQSDTH-----VFSGSEDGKVYFW  254 (307)
T ss_pred             ccchhHH-HHHhcccccceeeeeeeeccccee-----EEeccCCceEEEE
Confidence            9999854 488999988766665443323333     899999999 999

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=8.3e-27  Score=219.36  Aligned_cols=375  Identities=13%  Similarity=0.109  Sum_probs=275.6

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      +.+.|+++.=+|-=..+|.|..+|+|.|+++..++.                       +.+|+.-.            +
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-----------------------l~sFk~d~------------g  245 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-----------------------LMSFKQDW------------G  245 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCceEEEEEcccCcE-----------------------EEEEEccc------------c
Confidence            568999999999889999999999999999998864                       56665445            8


Q ss_pred             ceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          111 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +|++++|  ..||..++ +++..|.+.+||++..+.+....-            .+.+.+....+-+...++.+++.  |
T Consensus       246 ~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n------------ah~~sv~~~~fl~~epVl~ta~~--D  309 (910)
T KOG1539|consen  246 RVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN------------AHYGSVTGATFLPGEPVLVTAGA--D  309 (910)
T ss_pred             ceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeec------------cccCCcccceecCCCceEeeccC--C
Confidence            8999999  56776555 556779999999998776553221            12233444444444445555544  5


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCccCc---------------------
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISD---------------------  246 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~---------------------  246 (497)
                      +.+++|-.+.......+..+..||..+..++.|. .+|..+.++ .|++.+.+++....                     
T Consensus       310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~  389 (910)
T KOG1539|consen  310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS  389 (910)
T ss_pred             CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence            6666666654433322223336888888888886 466666665 66665555432100                     


Q ss_pred             --------------------------------eeeEEee----------cCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933          247 --------------------------------QCFNIVD----------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  284 (497)
Q Consensus       247 --------------------------------~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  284 (497)
                                                      ....+++          +++..++.....+++++.++.| ++.+.|+.
T Consensus       390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S  468 (910)
T KOG1539|consen  390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYS  468 (910)
T ss_pred             hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEecc
Confidence                                            0001111          1122233344678999999999 99999999


Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeee
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~  363 (497)
                      .|.|-+|++++|-..    +.+..          -..|..+|+.++...-++.++++ .+|.+++||... ..++..++.
T Consensus       469 ~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l  533 (910)
T KOG1539|consen  469 KGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRL  533 (910)
T ss_pred             CCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeecc
Confidence            999999999998543    23321          14577899999999888888886 569999999985 666666654


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccccc
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  443 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  443 (497)
                      ....                ..+..+.....++.+..|-.|+++|+.+. .+...+.+|.+.++.++|+|  ++++    
T Consensus       534 ~~~~----------------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~--DgrW----  590 (910)
T KOG1539|consen  534 GSSI----------------TGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSP--DGRW----  590 (910)
T ss_pred             CCCc----------------ceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCC--CCcE----
Confidence            4432                47888888889999999999999999987 44589999999999999999  8888    


Q ss_pred             ceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEe--CCceEEEe
Q 010933          444 NLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  496 (497)
Q Consensus       444 ~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~--~~~~~i~~  496 (497)
                       +++++.|+. ++| .+.....+......+.+++.|+|+|++||++.  .+++|+|.
T Consensus       591 -lisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  591 -LISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             -EEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence             999999999 999 44456666777889999999999999999998  46799996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4e-27  Score=207.32  Aligned_cols=269  Identities=17%  Similarity=0.263  Sum_probs=203.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccc-cchhhhhhhcccCCCCCCcccccccc-cccCcccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNH-ISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSLE  107 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~  107 (497)
                      .|.-+|.|++++|++++..+++.+++|.=|++.+++.. .+...-+.       .+..+.....- ++|.          
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-------~k~~~~~~k~~r~~h~----------  202 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-------LKSHGNPLKESRKGHV----------  202 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-------hhhccCCCCccccccc----------
Confidence            58899999999999999999999999999999988742 11111000       00011111111 2566          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..|.+++.  ++|+++|++|+.|..|.||+.++.+.+.                                        
T Consensus       203 --keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~----------------------------------------  238 (479)
T KOG0299|consen  203 --KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVK----------------------------------------  238 (479)
T ss_pred             --ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhh----------------------------------------
Confidence              77999999  7999999999999999999999876332                                        


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                          .+ .+|.+.|.+++|-.....++++ .|+.|++|+++ ....+.       ++.+|++.|
T Consensus       239 --------------------~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~ve-------tlyGHqd~v  289 (479)
T KOG0299|consen  239 --------------------VF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVE-------TLYGHQDGV  289 (479)
T ss_pred             --------------------cc-cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHH-------HHhCCccce
Confidence                                22 8999999999998877788887 99999999998 444444       388999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~  345 (497)
                      .++....-+ ..+-+|+.|+++++|++.....     .++             .+|.+.+-|++|-.+ ..+++|+| |.
T Consensus       290 ~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lif-------------rg~~~sidcv~~In~-~HfvsGSdnG~  349 (479)
T KOG0299|consen  290 LGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIF-------------RGGEGSIDCVAFIND-EHFVSGSDNGS  349 (479)
T ss_pred             eeechhccc-ceEEeccccceeEEEeccccce-----eee-------------eCCCCCeeeEEEecc-cceeeccCCce
Confidence            999988777 6777777999999999954321     223             345678999999855 56777765 99


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      |.+|++.. .+++.+.+...+..+.+-.+..+   +-|++++..|...++|+|+.+|.|++|.+..+
T Consensus       350 IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  350 IALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            99999986 88888776554443322111222   34579999999999999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1e-26  Score=240.80  Aligned_cols=258  Identities=13%  Similarity=0.174  Sum_probs=191.8

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+...|.+++|+| ++.+||+|+.||.|+|||+.+++                       .+..+.+|.           
T Consensus       530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~-----------  575 (793)
T PLN00181        530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE-----------  575 (793)
T ss_pred             cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC-----------
Confidence            3457899999987 57899999999999999998764                       367788998           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|++++|+| +++.+|++++.|++|++||+.++....                                         
T Consensus       576 -~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~-----------------------------------------  612 (793)
T PLN00181        576 -KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIG-----------------------------------------  612 (793)
T ss_pred             -CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEE-----------------------------------------
Confidence             8899999953 467899999999999999998765322                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                         .+ .. ...+.++.|+ +++..|++| .|+.|++||++........       +.+|...|
T Consensus       613 -------------------~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~~h~~~V  664 (793)
T PLN00181        613 -------------------TI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MIGHSKTV  664 (793)
T ss_pred             -------------------EE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ecCCCCCE
Confidence                               11 22 3468899994 579999999 9999999999844333333       56899999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      .++.|. ++ ..|++++.|+.|++||++.+.....           ......+.+|...+..++|+|++.+|++|+ |+.
T Consensus       665 ~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~-----------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        665 SYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGIN-----------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             EEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccC-----------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence            999997 55 7899999999999999985421000           001112445678899999999999999986 599


Q ss_pred             EEEEecCCCCceeeeeeeccc-ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          346 LKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      |++|+... ..++..+..... .+..+   ........+.+++|+|++.+|++|+.||.|+||++
T Consensus       732 v~iw~~~~-~~~~~s~~~~~~~~~~~~---~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        732 VFVYHKAF-PMPVLSYKFKTIDPVSGL---EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEECCC-CCceEEEecccCCccccc---ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99999875 444433321111 00000   00001112479999999999999999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.7e-26  Score=180.90  Aligned_cols=307  Identities=18%  Similarity=0.182  Sum_probs=221.0

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +..+..|.+++|+|.|.+.|+|+...+++|-....-..  ++...+     ++...|.. ..+.-+-|.           
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~--~r~~he-----a~~~pp~v-~~kr~khhk-----------   89 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID--LRHAHE-----AAKQPPSV-LCKRNKHHK-----------   89 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccC--cccccc-----cccCCCeE-EeeeccccC-----------
Confidence            34678999999999999999999999999876532110  000000     11111111 112223344           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|+|.+|  +|+|+++++++.|++|++..++...+...-                                       
T Consensus        90 -gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g---------------------------------------  127 (350)
T KOG0641|consen   90 -GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATG---------------------------------------  127 (350)
T ss_pred             -ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccC---------------------------------------
Confidence             99999999  789999999999999999877654322110                                       


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC----CCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                      .... +.-|.+.|..++|..    .+..|+++  .|..|++-|.. .++.++.       +.+|
T Consensus       128 ----------------~dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a-------~sgh  182 (350)
T KOG0641|consen  128 ----------------HDLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHA-------LSGH  182 (350)
T ss_pred             ----------------ccee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCccee-------ecCC
Confidence                            0011 268899999999953    45677775  78899999988 5555554       7899


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      .+-|.++ ++=++ -++++|+.|.+|++||++-...+    .++........      -....|.+++..|.|++|++| 
T Consensus       183 tghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v----~~l~~~~~~~g------lessavaav~vdpsgrll~sg~  250 (350)
T KOG0641|consen  183 TGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCV----NTLDNDFHDGG------LESSAVAAVAVDPSGRLLASGH  250 (350)
T ss_pred             cccEEEE-EEecC-cEEEccCCCceEEEEeeecccee----eeccCcccCCC------cccceeEEEEECCCcceeeecc
Confidence            9998887 33345 79999999999999999875443    22221000000      012578999999999999999 


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC---CcceEE
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SAGGIT  418 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~---~~~~~~  418 (497)
                      .|....+||++- +++++++..|...+               +++.|+|...||++++.|..|++=|++..   +.....
T Consensus       251 ~dssc~lydirg-~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v  314 (350)
T KOG0641|consen  251 ADSSCMLYDIRG-GRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV  314 (350)
T ss_pred             CCCceEEEEeeC-CceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence            569999999995 99999999888764               79999999999999999999999998753   222455


Q ss_pred             EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ...|+..+-...|.|.  ...     |++.+.|.. .+|
T Consensus       315 v~ehkdk~i~~rwh~~--d~s-----fisssadkt~tlw  346 (350)
T KOG0641|consen  315 VAEHKDKAIQCRWHPQ--DFS-----FISSSADKTATLW  346 (350)
T ss_pred             EEeccCceEEEEecCc--cce-----eeeccCcceEEEe
Confidence            6678888888888884  222     677777777 777

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=4.8e-26  Score=202.64  Aligned_cols=378  Identities=11%  Similarity=0.106  Sum_probs=264.0

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEeecCC--------eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP   98 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~   98 (497)
                      .-.+|++.|.|++.+||.-.+|+|...|        .++|||..+-.                       .+..+..-+ 
T Consensus        99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----------------------TL~V~g~f~-  154 (626)
T KOG2106|consen   99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----------------------TLHVIGFFD-  154 (626)
T ss_pred             cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----------------------eeeeecccc-
Confidence            3457999999999999998899887665        59999976532                       233344334 


Q ss_pred             ccccccccccccceeEEEEEecCCCCEEEEE--eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCC-C
Q 010933           99 EFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-P  175 (497)
Q Consensus        99 ~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~--s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  175 (497)
                                 ..|.+++|++...|.+++..  +.+..+.+||...+....-.+.             .+..+..+.+ +
T Consensus       155 -----------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-------------sne~v~~a~FHP  210 (626)
T KOG2106|consen  155 -----------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-------------SNEVVFLATFHP  210 (626)
T ss_pred             -----------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-------------ccceEEEEEecc
Confidence                       78999999876667777765  6788999999987653221110             0111222222 2


Q ss_pred             CCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeec
Q 010933          176 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  254 (497)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  254 (497)
                      .+.+++...+   .+.+.+|+.+.....+....|-+.....|.|++|.++|. +++| .+|.|.||+.. ..+..+.   
T Consensus       211 td~nliit~G---k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~k~---  282 (626)
T KOG2106|consen  211 TDPNLIITCG---KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRISKQ---  282 (626)
T ss_pred             CCCcEEEEeC---CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEEeE---
Confidence            3333333333   678999999988777766666344457899999999995 6678 99999999987 4444443   


Q ss_pred             CCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc-------cc-ceeccccc---------------
Q 010933          255 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SA-RILRDAAE---------------  311 (497)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------~~-~~~~~~~~---------------  311 (497)
                          ...|.+.|.+++...+|  .|++|+.|+.|..||-.-.+....       .. .+.+.+.+               
T Consensus       283 ----~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~  356 (626)
T KOG2106|consen  283 ----VHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL  356 (626)
T ss_pred             ----eeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence                23899999999999998  566699999999999322111000       00 01111000               


Q ss_pred             ccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933          312 SHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       312 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                      .........+|......++.+|+.+.++++ .|+.+++|+   +.+++.+.......                .++.|+|
T Consensus       357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~----------------~~~~fhp  417 (626)
T KOG2106|consen  357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPA----------------ECADFHP  417 (626)
T ss_pred             cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc---CCceeEEEEecCce----------------eEeeccC
Confidence            000011235788899999999998888776 569999999   26666666555443                4899999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--C-CCCCcccc-
Q 010933          391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELS-  465 (497)
Q Consensus       391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~-  465 (497)
                      .| .||.|...|...+.|.++...  .++.....+++.+.++|  +|.+     ||.|+.|+. +++  . .+...... 
T Consensus       418 sg-~va~Gt~~G~w~V~d~e~~~l--v~~~~d~~~ls~v~ysp--~G~~-----lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  418 SG-VVAVGTATGRWFVLDTETQDL--VTIHTDNEQLSVVRYSP--DGAF-----LAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             cc-eEEEeeccceEEEEeccccee--EEEEecCCceEEEEEcC--CCCE-----EEEecCCCeEEEEEECCCCcEEEEee
Confidence            99 999999999999999998533  44555589999999999  7777     999999999 888  2 22222221 


Q ss_pred             cccCCCeEEEEEecCCCEEEEEeCCc-eEEE
Q 010933          466 YNLSSKLLHLAWHPTTNLIACANGNS-LFFH  495 (497)
Q Consensus       466 ~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~  495 (497)
                      ..+..+|++++|++|+++|.+.+.|- +..|
T Consensus       488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            12238999999999999999988665 5555

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.9e-26  Score=201.56  Aligned_cols=244  Identities=18%  Similarity=0.278  Sum_probs=198.6

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...|.++...|....+++|+.|..+.++|...++                       .+..|+||.            ..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk  263 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK  263 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence            4688999999988899999999999999987764                       488999999            88


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |+.+.|  +++...+++++.|..|++|..........                                           
T Consensus       264 i~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~-------------------------------------------  298 (506)
T KOG0289|consen  264 ITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTS-------------------------------------------  298 (506)
T ss_pred             EEEEEe--ccchhheeecCCcceEEeeccccccCccc-------------------------------------------
Confidence            999999  57778999999999999999865442211                                           


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        ...|..+|+.+..+|.|++|+++ .|++..+.|++++.......      -+...-.+++.+
T Consensus       299 ------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ts~~  354 (506)
T KOG0289|consen  299 ------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS------DETSDVEYTSAA  354 (506)
T ss_pred             ------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe------eccccceeEEee
Confidence                              26899999999999999999999 99999999999444433321      122345689999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw  349 (497)
                      |+||| .+|.+|..|+.+++||+.++...    ..             |.+|.++|..++|+.+|-||+++.| +.|++|
T Consensus       355 fHpDg-Lifgtgt~d~~vkiwdlks~~~~----a~-------------Fpght~~vk~i~FsENGY~Lat~add~~V~lw  416 (506)
T KOG0289|consen  355 FHPDG-LIFGTGTPDGVVKIWDLKSQTNV----AK-------------FPGHTGPVKAISFSENGYWLATAADDGSVKLW  416 (506)
T ss_pred             EcCCc-eEEeccCCCceEEEEEcCCcccc----cc-------------CCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence            99999 99999999999999999886533    22             5568899999999999999999855 889999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      |++. .+..+++...+..              .+.++.|.+.|++|+.++.|=.|++++-.+.
T Consensus       417 DLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k  464 (506)
T KOG0289|consen  417 DLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK  464 (506)
T ss_pred             Eehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence            9996 6667777655431              1258999999999999988877777764443

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.5e-26  Score=219.05  Aligned_cols=255  Identities=17%  Similarity=0.226  Sum_probs=180.3

Q ss_pred             eecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC-CCEEEE
Q 010933           50 GDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFIL  128 (497)
Q Consensus        50 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s  128 (497)
                      |+.++.|++|+....                       ..+..+.+|.            +.|.+++|+  |+ +.+|++
T Consensus        50 GG~~gvI~L~~~~r~-----------------------~~v~~L~gH~------------~~V~~lafs--P~~~~lLAS   92 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-----------------------PPVIKLKGHT------------SSILDLQFN--PCFSEILAS   92 (568)
T ss_pred             CCceeEEEeeecCCC-----------------------ceEEEEcCCC------------CCEEEEEEc--CCCCCEEEE
Confidence            556778888886543                       2366788999            899999995  54 679999


Q ss_pred             EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeee
Q 010933          129 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV  208 (497)
Q Consensus       129 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (497)
                      |+.|++|++||+.++......                                                    ...++..
T Consensus        93 gS~DgtIrIWDi~t~~~~~~~----------------------------------------------------i~~p~~~  120 (568)
T PTZ00420         93 GSEDLTIRVWEIPHNDESVKE----------------------------------------------------IKDPQCI  120 (568)
T ss_pred             EeCCCeEEEEECCCCCccccc----------------------------------------------------cccceEE
Confidence            999999999999754310000                                                    0012222


Q ss_pred             eccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933          209 YPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  286 (497)
Q Consensus       209 ~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  286 (497)
                      + .+|...|.+++|+|++..+ +++ .|+.|++||++... ....       +. |...|.+++|+|+| .+|++++.|+
T Consensus       121 L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~-------i~-~~~~V~SlswspdG-~lLat~s~D~  189 (568)
T PTZ00420        121 L-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQ-------IN-MPKKLSSLKWNIKG-NLLSGTCVGK  189 (568)
T ss_pred             e-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEE-------Ee-cCCcEEEEEECCCC-CEEEEEecCC
Confidence            2 6899999999999988765 677 99999999999443 3322       22 45789999999999 9999999999


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccc-----cEEEEeeCCCEEEEEe-c----CeEEEEecCCCCc
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-----SDIKFANDGQHLLSRD-Y----MNLKLWDIRMDST  356 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~g~~l~~~~-~----~~i~lwd~~~~~~  356 (497)
                      .|+|||+++++.+    ..+..             |.+.+     ....|++++.+|++++ +    +.|+|||++...+
T Consensus       190 ~IrIwD~Rsg~~i----~tl~g-------------H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        190 HMHIIDPRKQEIA----SSFHI-------------HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             EEEEEECCCCcEE----EEEec-------------ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence            9999999988654    34444             33333     2334568888888753 3    3799999986566


Q ss_pred             eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933          357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  434 (497)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (497)
                      ++..+..+....          .+   ......+++.++++|+.|+.|++|++..+......-..+..+.++++|.|.
T Consensus       253 pl~~~~ld~~~~----------~L---~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        253 ALVTMSIDNASA----------PL---IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             ceEEEEecCCcc----------ce---EEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence            776665443321          00   123334568899999999999999998763222222235678888999885

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.3e-27  Score=196.60  Aligned_cols=322  Identities=16%  Similarity=0.200  Sum_probs=237.7

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ..+|.+.|+.++-......+.+++.|.+-+||.++++                       +++.++.||.          
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-----------------------~CL~~Y~GH~----------  190 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-----------------------ACLATYTGHT----------  190 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeeccc-----------------------cceeeecccc----------
Confidence            3479999999999988889999999999999999987                       5699999999          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc-CccccCCCCCccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-NFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (497)
                        +.|++++|  ++.+.++++++.|++..||...-.-.......+.          .+++ .....+ . .......++.
T Consensus       191 --GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~----------~hSsEeE~e~s-D-e~~~d~d~~~  254 (481)
T KOG0300|consen  191 --GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS----------DHSSEEEEEHS-D-EHNRDTDSSE  254 (481)
T ss_pred             --cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCC----------CCCchhhhhcc-c-cccccccccc
Confidence              99999999  4678899999999999999732111000000000          0000 000000 0 0000011111


Q ss_pred             -ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          187 -TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       187 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                       +++..|++          ++..+ .+|...|.+..|...|+.++++ .|.+..+||++ .+..+++       +.+|..
T Consensus       255 ~sD~~tiRv----------Pl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-tge~v~~-------LtGHd~  315 (481)
T KOG0300|consen  255 KSDGHTIRV----------PLMRL-TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-TGEVVNI-------LTGHDS  315 (481)
T ss_pred             ccCCceeee----------eeeee-eccccceEehhhhcCcceeeeeeccccceeeeec-cCceecc-------ccCcch
Confidence             11123333          33344 8999999999999999999999 99999999999 6667765       899999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  343 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~  343 (497)
                      ..+.++-+|.. +++++++.|.+.++||++..  + ..+.+             |.+|...++++.|..+.+ +++|+ |
T Consensus       316 ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--I-~sV~V-------------FQGHtdtVTS~vF~~dd~-vVSgSDD  377 (481)
T KOG0300|consen  316 ELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--I-QSVAV-------------FQGHTDTVTSVVFNTDDR-VVSGSDD  377 (481)
T ss_pred             hccccccCCcc-eEEEEeccCceeEeccchhh--c-ceeee-------------ecccccceeEEEEecCCc-eeecCCC
Confidence            99999999998 99999999999999999842  1 11233             556788999999987664 56665 5


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc---eEEEe
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVE  420 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~  420 (497)
                      .+|++||+++...++.++......                ..++.+..+..|+.--++..|++||+......   ...-+
T Consensus       378 rTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq  441 (481)
T KOG0300|consen  378 RTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ  441 (481)
T ss_pred             ceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence            999999999878889888766543                58999998899999999999999999754321   22456


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +|...|.+.++.-..+..-     |.+++.|.. .-|
T Consensus       442 gHrRMV~c~AW~eehp~cn-----LftcGFDR~v~gW  473 (481)
T KOG0300|consen  442 GHRRMVTCCAWLEEHPACN-----LFTCGFDRMVAGW  473 (481)
T ss_pred             ccceeeeeeeccccCcccc-----cccccccceeeee
Confidence            8999999999986544333     777777766 556

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=217.38  Aligned_cols=278  Identities=19%  Similarity=0.315  Sum_probs=219.1

Q ss_pred             cCCcceE---EEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           30 QDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        30 ~h~~~I~---~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      +|...|.   ++..+. .++||.||+.||.|++|+......                 .|+-.+...++.|.        
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~-----------------~~s~~~~asme~Hs--------   73 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN-----------------EPSTPYIASMEHHS--------   73 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccC-----------------CcccchhhhhhhhH--------
Confidence            5666666   555554 677899999999999999865432                 23334678889999        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                          +.|+++..+  .+++.|+++|.|-+|++|+...+. .                                       
T Consensus        74 ----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~-~---------------------------------------  107 (735)
T KOG0308|consen   74 ----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDN-T---------------------------------------  107 (735)
T ss_pred             ----hHHhhHHhh--cCCCceEEecCCceEEEeecccCc-c---------------------------------------
Confidence                999999884  678899999999999999987543 0                                       


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEe-CCCCCEEEEE-cCCeEEEEeCccCce-eeEEee-cCCCccC-
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVD-MKPSNMD-  260 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~-~~~~~~~-  260 (497)
                                        -|..++ ..|.+.|.|+++ .++...+|+| -|+.|.+||++++.. .....+ +....+. 
T Consensus       108 ------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen  108 ------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             ------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence                              133333 799999999999 7888888998 999999999994421 111111 1112344 


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ++..+|++++.++.| ..|++|+..+.|++||.++++.+      +..           .+|+..|..+..++||..+++
T Consensus       169 G~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~ki------mkL-----------rGHTdNVr~ll~~dDGt~~ls  230 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKI------MKL-----------RGHTDNVRVLLVNDDGTRLLS  230 (735)
T ss_pred             CCccceeeeecCCcc-eEEEecCcccceEEeccccccce------eee-----------eccccceEEEEEcCCCCeEee
Confidence            889999999999999 99999999999999999998643      222           457889999999999999988


Q ss_pred             E-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 010933          341 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       341 ~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  419 (497)
                      + +||+|++||+.. .+++.++..|...+               +++..+|+=.++++|+.||.|+.=|+.+.... ..+
T Consensus       231 ~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tli  293 (735)
T KOG0308|consen  231 ASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLI  293 (735)
T ss_pred             cCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCchhh-eEe
Confidence            7 679999999997 89999999999865               78999999999999999999999999986333 445


Q ss_pred             eccCcceeeeEee
Q 010933          420 EAGKNENRKPILQ  432 (497)
Q Consensus       420 ~~~~~~v~~~~~~  432 (497)
                      .....|+..+...
T Consensus       294 ck~daPv~~l~~~  306 (735)
T KOG0308|consen  294 CKEDAPVLKLHLH  306 (735)
T ss_pred             ecCCCchhhhhhc
Confidence            5555566665555

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=7e-27  Score=195.72  Aligned_cols=293  Identities=15%  Similarity=0.195  Sum_probs=209.8

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheec----cccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK----IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                      +++.+-+|  ++||.++++|+.|..|+|.|++....+.    +......                               
T Consensus       113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~q-------------------------------  159 (430)
T KOG0640|consen  113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQ-------------------------------  159 (430)
T ss_pred             cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcc-------------------------------
Confidence            88999999  7999999999999999999997532111    1100000                               


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc--eeeEEeecCCCccCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDL  262 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~  262 (497)
                                     .....++++ ..|...|+++.|+|....|++| .|++|++||+....  +..+        ....
T Consensus       160 ---------------a~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K--------~~qd  215 (430)
T KOG0640|consen  160 ---------------ARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK--------VFQD  215 (430)
T ss_pred             ---------------cCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHH--------Hhhc
Confidence                           011244554 8999999999999999999999 99999999998332  2222        2234


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      ..+|.++.|+|.| .+|++|..-..+++||+++-+...      ..        ..-++|.+.|+++.+++.|++.++|+
T Consensus       216 ~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfv------sa--------nPd~qht~ai~~V~Ys~t~~lYvTaS  280 (430)
T KOG0640|consen  216 TEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFV------SA--------NPDDQHTGAITQVRYSSTGSLYVTAS  280 (430)
T ss_pred             cceeeeEeecCCC-ceEEEecCCCceeEEeccceeEee------ec--------CcccccccceeEEEecCCccEEEEec
Confidence            5789999999999 999999999999999999875431      11        01246789999999999999999996


Q ss_pred             -cCeEEEEecCCCCceeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          343 -YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       343 -~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                       ||.|++||=-. ++++.++.. |.+.           .   |.+..|..+|+||++.|.|..+++|.+.+++.+.....
T Consensus       281 kDG~IklwDGVS-~rCv~t~~~AH~gs-----------e---vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  281 KDGAIKLWDGVS-NRCVRTIGNAHGGS-----------E---VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             cCCcEEeecccc-HHHHHHHHhhcCCc-----------e---eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence             59999999876 888888853 4332           1   26899999999999999999999999999977643332


Q ss_pred             cc-Cc---ceeeeEeecCCCcccccccceeEeecc-Cc-eec---CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933          421 AG-KN---ENRKPILQAAPRARRSSLSNLTRGLYR-QA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  491 (497)
Q Consensus       421 ~~-~~---~v~~~~~~~~~~~~~~~~~~l~~~~~d-~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~  491 (497)
                      +. .+   .-....|....+.       +..-.+. +. .-|   ...+......+|++.++.+.-+|.++.+.+|++|-
T Consensus       346 Ag~tgrq~~rtqAvFNhtEdy-------Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  346 AGTTGRQKHRTQAVFNHTEDY-------VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             CCcccchhhhhhhhhcCccce-------EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            21 01   1111122221110       1111111 11 445   12223334578999999999999999999999664


Q ss_pred             -eEEEe
Q 010933          492 -LFFHY  496 (497)
Q Consensus       492 -~~i~~  496 (497)
                       ..+|+
T Consensus       419 raRFWy  424 (430)
T KOG0640|consen  419 RARFWY  424 (430)
T ss_pred             eeeeee
Confidence             88886

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.3e-26  Score=212.04  Aligned_cols=269  Identities=17%  Similarity=0.234  Sum_probs=200.9

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      +-++|+ ..+.||+|.. ..|++|+..+++.                     ..+..+  ++            +.|+++
T Consensus       181 nlldWs-s~n~laValg-~~vylW~~~s~~v---------------------~~l~~~--~~------------~~vtSv  223 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALG-QSVYLWSASSGSV---------------------TELCSF--GE------------ELVTSV  223 (484)
T ss_pred             hHhhcc-cCCeEEEEec-ceEEEEecCCCce---------------------EEeEec--CC------------CceEEE
Confidence            456777 4557777764 5899999988753                     112222  24            789999


Q ss_pred             EEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933          116 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  195 (497)
Q Consensus       116 ~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (497)
                      .|  +++|.+|+.|..+|.|.|||....+....                                               
T Consensus       224 ~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~-----------------------------------------------  254 (484)
T KOG0305|consen  224 KW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRT-----------------------------------------------  254 (484)
T ss_pred             EE--CCCCCEEEEeecCCeEEEEehhhcccccc-----------------------------------------------
Confidence            99  78999999999999999999987653321                                               


Q ss_pred             eecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC
Q 010933          196 NVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  273 (497)
Q Consensus       196 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  273 (497)
                                   + .+ |...|-+++|+  +..+.+| .++.|..+|++.......+       +.+|...|..++|++
T Consensus       255 -------------~-~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  255 -------------L-RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQEVCGLKWSP  311 (484)
T ss_pred             -------------c-cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccceeeeeEECC
Confidence                         1 44 89999999998  6678888 9999999999965554442       788999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe---cCeEEEE
Q 010933          274 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD---YMNLKLW  349 (497)
Q Consensus       274 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~---~~~i~lw  349 (497)
                      ++ .+||+|+.|+.+.|||....+..    ..             +.+|...|.+++|+|- ..+||+|.   |+.|++|
T Consensus       312 d~-~~lASGgnDN~~~Iwd~~~~~p~----~~-------------~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  312 DG-NQLASGGNDNVVFIWDGLSPEPK----FT-------------FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             CC-CeeccCCCccceEeccCCCcccc----EE-------------EeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            99 99999999999999999554322    22             3457799999999994 56788863   5999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      |..+ ++.+..+.....                |.++.|++..+-|+++.  .++.|.||+..+... ...+.+|...|.
T Consensus       374 n~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~-~~~l~gH~~RVl  435 (484)
T KOG0305|consen  374 NTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL-VAELLGHTSRVL  435 (484)
T ss_pred             EcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccce-eeeecCCcceeE
Confidence            9986 888877765544                26999999887666543  478999999998633 355666655555


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eec
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .++.+|  ++..     +++|+.|.. ++|
T Consensus       436 ~la~SP--dg~~-----i~t~a~DETlrfw  458 (484)
T KOG0305|consen  436 YLALSP--DGET-----IVTGAADETLRFW  458 (484)
T ss_pred             EEEECC--CCCE-----EEEecccCcEEec
Confidence            555555  3333     455555554 555

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.4e-25  Score=188.04  Aligned_cols=249  Identities=15%  Similarity=0.160  Sum_probs=189.0

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .+.|+.+.|+|.++.|++++.||++++||......                        ...-.|+            .+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l------------------------~~~~~~~------------~p   56 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL------------------------KLKFKHG------------AP   56 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh------------------------hhheecC------------Cc
Confidence            57999999999999999999999999999876432                        1122355            88


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      +.+++|   .+...+++|+.||.|+.+|+.++....                                            
T Consensus        57 lL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~--------------------------------------------   89 (323)
T KOG1036|consen   57 LLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQ--------------------------------------------   89 (323)
T ss_pred             eeeeec---cCCceEEEeccCceEEEEEecCCccee--------------------------------------------
Confidence            999999   346789999999999999999877332                                            


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        +..|...|.++.+++....+++| .|++|++||.+ .......       + .....|.++.
T Consensus        90 ------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~-------~-d~~kkVy~~~  142 (323)
T KOG1036|consen   90 ------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGT-------F-DQGKKVYCMD  142 (323)
T ss_pred             ------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecc-ccccccc-------c-ccCceEEEEe
Confidence                              26889999999999987788888 99999999998 3332222       2 2334788887


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lw  349 (497)
                      ..  + +.|++|+.|..+.+||+|+.....+.    ..           ...+-.+.++++-|++.-++++ -+|+|.+=
T Consensus       143 v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~----re-----------S~lkyqtR~v~~~pn~eGy~~sSieGRVavE  204 (323)
T KOG1036|consen  143 VS--G-NRLVVGTSDRKVLIYDLRNLDEPFQR----RE-----------SSLKYQTRCVALVPNGEGYVVSSIEGRVAVE  204 (323)
T ss_pred             cc--C-CEEEEeecCceEEEEEcccccchhhh----cc-----------ccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence            76  4 67999999999999999986533210    00           0112468999999987766665 46988876


Q ss_pred             ecCCCC----ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          350 DIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       350 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      .+.. .    +....|+.|....      ...+.+++|.+++|+|-.+.+|||+.||.|.+||..+.+.+
T Consensus       205 ~~d~-s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  205 YFDD-SEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             ccCC-chHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence            6654 3    3445677776532      23345677889999999999999999999999999877443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.7e-26  Score=219.86  Aligned_cols=268  Identities=16%  Similarity=0.272  Sum_probs=220.8

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      +...+.|..|.  +.++++|+.|++|.+||..++.                      .....+.||.            +
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~----------------------~i~~~l~GH~------------g  250 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY----------------------LILTRLVGHF------------G  250 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccce----------------------EEEeeccCCC------------C
Confidence            46788899998  5589999999999999998764                      2344499999            9


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.++++.  ..+.++++|+.|.++++||..++++.                                            
T Consensus       251 ~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~--------------------------------------------  284 (537)
T KOG0274|consen  251 GVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECT--------------------------------------------  284 (537)
T ss_pred             CceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEE--------------------------------------------
Confidence            99999993  35779999999999999999888744                                            


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                      ..+ .+|...+.++...  +..+++| .|.+|++|+++ .+..+.+       +.+|.++|+++
T Consensus       285 ----------------~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~V~~v  337 (537)
T KOG0274|consen  285 ----------------HSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGPVNCV  337 (537)
T ss_pred             ----------------EEe-cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------eccccccEEEE
Confidence                            444 7999999988765  3467777 99999999999 7777776       56799999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l  348 (497)
                      ..+  + .++++|+.|+.|++||+.+++.+    +.+.+             |...|.++.+.+. ..+++|+ |+.|++
T Consensus       338 ~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~sl~g-------------H~~~V~sl~~~~~-~~~~Sgs~D~~Ikv  396 (537)
T KOG0274|consen  338 QLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KSLSG-------------HTGRVYSLIVDSE-NRLLSGSLDTTIKV  396 (537)
T ss_pred             Eec--C-CEEEEEecCceEEEEEhhhceee----eeecC-------------CcceEEEEEecCc-ceEEeeeeccceEe
Confidence            998  5 78999999999999999987665    55444             6789999988765 7888875 599999


Q ss_pred             EecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-cCcce
Q 010933          349 WDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNEN  426 (497)
Q Consensus       349 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v  426 (497)
                      ||+++ . +++..+.+|...+                 -.....+++|++++.|+.|++||..+++.+ ..+++ |...+
T Consensus       397 Wdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~-~~~~~~~~~~v  457 (537)
T KOG0274|consen  397 WDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEGECL-RTLEGRHVGGV  457 (537)
T ss_pred             ecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccCcee-eeeccCCcccE
Confidence            99997 6 8999999998854                 233346789999999999999999998665 77777 67888


Q ss_pred             eeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ..+++..    .     .+++++.++. ++|
T Consensus       458 ~~l~~~~----~-----~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  458 SALALGK----E-----EILCSSDDGSVKLW  479 (537)
T ss_pred             EEeecCc----c-----eEEEEecCCeeEEE
Confidence            8887751    1     2788888888 999

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=8.7e-26  Score=189.88  Aligned_cols=294  Identities=16%  Similarity=0.208  Sum_probs=206.0

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      +..|++|.            +.|++++|  +.||++|++++.|++|++|++++...+..                     
T Consensus        79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH---------------------  123 (420)
T KOG2096|consen   79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEH---------------------  123 (420)
T ss_pred             hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhh---------------------
Confidence            56788999            88999999  78999999999999999999987553321                     


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCc-
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD-  246 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~-  246 (497)
                                                        ++++..  -.-+..+.+.|+||.+.++..  ...++++|.+.... 
T Consensus       124 ----------------------------------r~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d  167 (420)
T KOG2096|consen  124 ----------------------------------RCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD  167 (420)
T ss_pred             ----------------------------------hHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence                                              122211  112245678999999887765  78899999775211 


Q ss_pred             --eeeEEeecCCC-ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          247 --QCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       247 --~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                        .....+..... --..|+..+..+-...++ .+|++++.|..|.+|+++ |+.+    ..+..             ..
T Consensus       168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq  228 (420)
T KOG2096|consen  168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQ  228 (420)
T ss_pred             CCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------cc
Confidence              11111111111 123466777788777777 999999999999999999 6544    22222             12


Q ss_pred             ccccEEEEeeCCCEEEEEec-CeEEEEecCC--CC-----ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE
Q 010933          324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DS-----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  395 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  395 (497)
                      ..-+..+.||+|++++++.. -.|++|.+-.  ++     +.+..+++|...+               +.++|+++...+
T Consensus       229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~  293 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRA  293 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCccee
Confidence            34567889999999999876 8899998642  12     2456788998865               789999999999


Q ss_pred             EEEeCCCcEEEEEcCCCC----cc------eEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec--CCCCCcc
Q 010933          396 ATGSYSNLLRIFSHGVGS----AG------GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--SSSGHHE  463 (497)
Q Consensus       396 ~s~~~dg~i~vw~~~~~~----~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw--~~~~~~~  463 (497)
                      ++.|.||+++|||.+-.-    ..      ...+.+..+.-..+..+|  .++.     ||.......+++  ..++...
T Consensus       294 vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP--~g~~-----lA~s~gs~l~~~~se~g~~~~  366 (420)
T KOG2096|consen  294 VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP--SGDS-----LAVSFGSDLKVFASEDGKDYP  366 (420)
T ss_pred             EEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC--CCcE-----EEeecCCceEEEEcccCccch
Confidence            999999999999975421    10      112223333444777888  5555     666655544665  2222222


Q ss_pred             c-ccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933          464 L-SYNLSSKLLHLAWHPTTNLIACANGNSLFFH  495 (497)
Q Consensus       464 ~-~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~  495 (497)
                      . -..|+..|.+++|+|+|+++|++++..+.++
T Consensus       367 ~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~  399 (420)
T KOG2096|consen  367 ELEDIHSTTISSISYSSDGKYIATCGDRYVRVI  399 (420)
T ss_pred             hHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence            2 3458899999999999999999999887765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=2e-27  Score=193.06  Aligned_cols=243  Identities=14%  Similarity=0.219  Sum_probs=199.3

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|....++.+...-|+++.|-+-+|||.-++..                       +.+|             +|
T Consensus        56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgde-----------------------lhsf-------------~h   99 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE-----------------------LHSF-------------EH   99 (334)
T ss_pred             eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh-----------------------hhhh-------------hh
Confidence            36999999999999999999999999999999888743                       3333             23


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      +.-|.+++|  +.|..+|++|+.+..+||||++..+...                                         
T Consensus       100 khivk~~af--~~ds~~lltgg~ekllrvfdln~p~App-----------------------------------------  136 (334)
T KOG0278|consen  100 KHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPP-----------------------------------------  136 (334)
T ss_pred             hheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCc-----------------------------------------
Confidence            366999999  7899999999999999999997654211                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        .. +.+|++.|..+.|....+.|+++ +|++|++||.+ .+..++.+        ....+|+
T Consensus       137 ------------------~E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL--------~~~s~Vt  188 (334)
T KOG0278|consen  137 ------------------KE-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSL--------EFNSPVT  188 (334)
T ss_pred             ------------------hh-hcCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEE--------ecCCCCc
Confidence                              11 27999999999999988899998 99999999999 55555543        2457899


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      ++.++++| . +++....+.|.+||..+-..+    +.++.              ...|.+.+++|+...+++|. |..+
T Consensus       189 SlEvs~dG-~-ilTia~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fVaGged~~~  248 (334)
T KOG0278|consen  189 SLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFVAGGEDFKV  248 (334)
T ss_pred             ceeeccCC-C-EEEEecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEEecCcceEE
Confidence            99999998 5 455566778999999987655    44444              24689999999998888874 5999


Q ss_pred             EEEecCCCCceeeee-eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          347 KLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      +.||..+ +..+..+ ++|.+++               .++.|+|||...++||+||+|++|.+..++.
T Consensus       249 ~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  249 YKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            9999998 7778776 8888876               7999999999999999999999999887644

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.3e-25  Score=215.08  Aligned_cols=219  Identities=14%  Similarity=0.137  Sum_probs=163.9

Q ss_pred             cccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ..+|.+.|++++|+| ++++||+|+.|++|+|||+.++...                ......+..+.+|.         
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~----------------~~~~~~l~~L~gH~---------  125 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT----------------QNISDPIVHLQGHT---------  125 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc----------------cccCcceEEecCCC---------
Confidence            346999999999999 8899999999999999998764210                00113456788998         


Q ss_pred             ccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          107 EIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                         ..|.+++|+  |+ +.+|++++.|++|+|||+.+++..                                       
T Consensus       126 ---~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~~---------------------------------------  161 (493)
T PTZ00421        126 ---KKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKAV---------------------------------------  161 (493)
T ss_pred             ---CcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeEE---------------------------------------
Confidence               889999995  54 368999999999999999876522                                       


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                           ..+ .+|...|.+++|+|+|..|+++ .|+.|++||+++ ++....       +.+|..
T Consensus       162 ---------------------~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~t-------l~~H~~  211 (493)
T PTZ00421        162 ---------------------EVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSS-------VEAHAS  211 (493)
T ss_pred             ---------------------EEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEE-------EecCCC
Confidence                                 222 6888999999999999999999 999999999994 444443       456665


Q ss_pred             C-eEEEEEeCCCCcEEEEEe----CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          265 V-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       265 ~-i~~~~~~~~~~~~l~~~~----~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      . ...+.|.+++ ..+++++    .|+.|++||+++.....   .....+            +...+....|++++++|+
T Consensus       212 ~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~---~~~~~d------------~~~~~~~~~~d~d~~~L~  275 (493)
T PTZ00421        212 AKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPY---STVDLD------------QSSALFIPFFDEDTNLLY  275 (493)
T ss_pred             CcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCce---eEeccC------------CCCceEEEEEcCCCCEEE
Confidence            4 4567889887 6666654    47999999998754221   111110            123455677899999888


Q ss_pred             EEe--cCeEEEEecCCCCceeeeee
Q 010933          340 SRD--YMNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       340 ~~~--~~~i~lwd~~~~~~~~~~~~  362 (497)
                      +++  |+.|++||+.. ++++....
T Consensus       276 lggkgDg~Iriwdl~~-~~~~~~~~  299 (493)
T PTZ00421        276 IGSKGEGNIRCFELMN-ERLTFCSS  299 (493)
T ss_pred             EEEeCCCeEEEEEeeC-CceEEEee
Confidence            763  69999999986 66665543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=7.3e-26  Score=209.42  Aligned_cols=361  Identities=14%  Similarity=0.134  Sum_probs=239.7

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      .++.|++....|.+...|..|+|||+...+.                    ......+-.|.            ..|+++
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~k--------------------vgk~~s~lyHS------------~ciW~V  375 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNK--------------------VGKCSSMLYHS------------ACIWDV  375 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEecccccc--------------------ccceeeeeecc------------ceeeee
Confidence            4788999999999999999999999987543                    01123344566            667777


Q ss_pred             EEEe----cCC-----CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCc-ccccccc
Q 010933          116 RWCA----APN-----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLE  185 (497)
Q Consensus       116 ~~~~----s~~-----~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  185 (497)
                      .-.|    ++.     ...|.+++.|++|++|+++.+..-.+..-+..           +.......+..+. ..+... 
T Consensus       376 e~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----------s~~l~ki~y~d~~~q~~~d~-  443 (1080)
T KOG1408|consen  376 ENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----------SANLSKIPYEDSTQQIMHDA-  443 (1080)
T ss_pred             ccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----------hhhhhcCccccCchhhhhhc-
Confidence            6544    111     23589999999999999986321111000000           0000000000000 000000 


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                           ..-++|-.       .... ......+.+++++|+|++|++| .-|.+++|++.... ...       .++.|+.
T Consensus       444 -----~~~~fdka-------~~s~-~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~-------~~eAHes  502 (1080)
T KOG1408|consen  444 -----SAGIFDKA-------LVST-CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTC-------FMEAHES  502 (1080)
T ss_pred             -----cCCccccc-------chhh-cCcccceEEEEECCCcceecccCccCceEEEEehhhh-hhh-------heecccc
Confidence                 00011111       0000 2345578999999999999999 99999999998333 222       2689999


Q ss_pred             CeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC---CEEE
Q 010933          265 VITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLL  339 (497)
Q Consensus       265 ~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~  339 (497)
                      .|.++.|+..  +.++||+++.|+.|++||+...-..                ..++.+|...|+++.|--+|   ++|-
T Consensus       503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l----------------~qtld~HSssITsvKFa~~gln~~Mis  566 (1080)
T KOG1408|consen  503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL----------------VQTLDGHSSSITSVKFACNGLNRKMIS  566 (1080)
T ss_pred             eeEEEeecCchhhhHhhhhccCCceEEEEecccccch----------------hhhhcccccceeEEEEeecCCceEEEe
Confidence            9999999853  2378999999999999998643211                22356678999999998877   3444


Q ss_pred             EEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 010933          340 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       340 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  419 (497)
                      +|.|..|.+--.+. ..-...+..|....       ....   +++++..|..+++++++.|.+|+||++++++.. +.+
T Consensus       567 cGADksimFr~~qk-~~~g~~f~r~t~t~-------~ktT---lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~F  634 (1080)
T KOG1408|consen  567 CGADKSIMFRVNQK-ASSGRLFPRHTQTL-------SKTT---LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSF  634 (1080)
T ss_pred             ccCchhhheehhcc-ccCceecccccccc-------ccce---EEEeeeCCCcceEEEEecccceEEEecccccee-eee
Confidence            56666665443332 22222232232221       1112   369999999999999999999999999999665 666


Q ss_pred             ec---cCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCce
Q 010933          420 EA---GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSL  492 (497)
Q Consensus       420 ~~---~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~  492 (497)
                      ++   |.+..-.+..-|  .+-+     +|+...|+. .++  .+++....+.+|...|+.|.|.+|-+.|++++ ++.|
T Consensus       635 Kgs~~~eG~lIKv~lDP--SgiY-----~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI  707 (1080)
T KOG1408|consen  635 KGSRDHEGDLIKVILDP--SGIY-----LATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI  707 (1080)
T ss_pred             cccccCCCceEEEEECC--CccE-----EEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence            65   334455555655  3444     899999988 666  88889999999999999999999999988877 5569


Q ss_pred             EEEe
Q 010933          493 FFHY  496 (497)
Q Consensus       493 ~i~~  496 (497)
                      |||.
T Consensus       708 FvW~  711 (1080)
T KOG1408|consen  708 FVWK  711 (1080)
T ss_pred             EEEE
Confidence            9996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.9e-26  Score=188.85  Aligned_cols=268  Identities=13%  Similarity=0.135  Sum_probs=202.3

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCch-heeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      +.|.+|+|+| ....+++++|.|++||+|+++.. ....                                         
T Consensus        28 DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~-----------------------------------------   65 (347)
T KOG0647|consen   28 DSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVP-----------------------------------------   65 (347)
T ss_pred             cchheeEecc-ccCceEEecccCCceEEEEEecCCcccc-----------------------------------------
Confidence            8899999965 24456668899999999999863 3211                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                         +-...|.++|.+++|+.+|..+++| .|+.+++||+. .++..+        +..|.++|.
T Consensus        66 -------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-S~Q~~~--------v~~Hd~pvk  117 (347)
T KOG0647|consen   66 -------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-SGQVSQ--------VAAHDAPVK  117 (347)
T ss_pred             -------------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-CCCeee--------eeeccccee
Confidence                               0025889999999999999999999 99999999999 556555        568999999


Q ss_pred             EEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933          268 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  345 (497)
Q Consensus       268 ~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~  345 (497)
                      .+.|-+.. -..|++||.|++|+.||+|....+    ..+..              .+.++++..-  ..+++.+ .++.
T Consensus       118 t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~--~pm~vVata~r~  177 (347)
T KOG0647|consen  118 TCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVL--YPMAVVATAERH  177 (347)
T ss_pred             EEEEecCCCcceeEecccccceeecccCCCCee----eeeec--------------cceeeehhcc--CceeEEEecCCc
Confidence            99998765 138999999999999999976544    33332              1345555443  2355555 5699


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC-CcceEEEeccCc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGKN  424 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~-~~~~~~~~~~~~  424 (497)
                      |.+|+++.+....+.+...-.              +.+++++..+|....+.|+-+|++.|..++.+ .....+++.|+.
T Consensus       178 i~vynL~n~~te~k~~~SpLk--------------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~  243 (347)
T KOG0647|consen  178 IAVYNLENPPTEFKRIESPLK--------------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS  243 (347)
T ss_pred             EEEEEcCCCcchhhhhcCccc--------------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence            999999764333333332211              12368999999888899999999999999874 233477888873


Q ss_pred             ---------ceeeeEeecCCCcccccccceeEeeccCc-eecCCC--CCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933          425 ---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       425 ---------~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~--~~~~~~~~~~~~i~~l~~~p~~~~la~~~  488 (497)
                               .|++++|.|.  ..     .|++.|+||. ..|...  ..+.....+..+|++.+|+.+|.++|.+.
T Consensus       244 ~~~~~~~VYaVNsi~FhP~--hg-----tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  244 TNSVNDDVYAVNSIAFHPV--HG-----TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             CCCCCCceEEecceEeecc--cc-----eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence                     6788999983  33     3899999999 999433  34555678999999999999999999876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=4e-27  Score=198.35  Aligned_cols=244  Identities=16%  Similarity=0.258  Sum_probs=205.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc-ccCccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~  108 (497)
                      -+.++|.|+.||.|...||+|+.||.|++|.+.+|.                       ++..|. +|+           
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~-----------------------ClRrFdrAHt-----------  306 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ-----------------------CLRRFDRAHT-----------  306 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEecch-----------------------HHHHhhhhhc-----------
Confidence            468999999999999999999999999999999984                       466665 898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|+++.|  +.|+..+++++.|.++++.-+.+|++.+                                         
T Consensus       307 -kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LK-----------------------------------------  342 (508)
T KOG0275|consen  307 -KGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLK-----------------------------------------  342 (508)
T ss_pred             -cCeeEEEE--ccCcchhhcccccceEEEeccccchhHH-----------------------------------------
Confidence             88999999  7899999999999999999998887443                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                         .+ .+|++.|+...|.++|..++++ .||+|++|+.. ...+..++.     ..+...+|.
T Consensus       343 -------------------Ef-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk-----~~~~d~~vn  396 (508)
T KOG0275|consen  343 -------------------EF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFK-----PLGTDYPVN  396 (508)
T ss_pred             -------------------Hh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhcc-----CCCCcccce
Confidence                               33 8999999999999999999999 99999999999 566766532     334567888


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i  346 (497)
                      ++..-|..+..++++...+++++.++.. +.+    +.|..-.          -..+...+.+.||.|+++.+. .|+.+
T Consensus       397 sv~~~PKnpeh~iVCNrsntv~imn~qG-QvV----rsfsSGk----------REgGdFi~~~lSpkGewiYcigED~vl  461 (508)
T KOG0275|consen  397 SVILLPKNPEHFIVCNRSNTVYIMNMQG-QVV----RSFSSGK----------REGGDFINAILSPKGEWIYCIGEDGVL  461 (508)
T ss_pred             eEEEcCCCCceEEEEcCCCeEEEEeccc-eEE----eeeccCC----------ccCCceEEEEecCCCcEEEEEccCcEE
Confidence            9998888878999999999999999864 333    3333200          012567788899999999885 67999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      +.|...+ +++-.++..|+..+               ..++-+|..+.||+-++||.+++|.
T Consensus       462 YCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  462 YCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchhhhcC
Confidence            9999987 89999999998754               5899999999999999999999995

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.6e-26  Score=189.72  Aligned_cols=240  Identities=18%  Similarity=0.303  Sum_probs=186.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.++|+|+|.+  |.|+|+|+.|-+|+|||.....+                       +..+-.|.            
T Consensus        41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------------lg~ll~Ha------------   83 (362)
T KOG0294|consen   41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------------LGILLSHA------------   83 (362)
T ss_pred             ccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------------hcceeccc------------
Confidence            489999999986  88999999999999999987654                       66777888            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|+++.|.+......|++|+.||.|.+|++....                                             
T Consensus        84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~---------------------------------------------  118 (362)
T KOG0294|consen   84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE---------------------------------------------  118 (362)
T ss_pred             cceEEEEecCCcchhheeeecCCCcEEEEEcCCeE---------------------------------------------
Confidence            99999999542233489999999999999987654                                             


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     ++..+ ++|...|+.++++|.|++.++- .|+.+++||+-. ++...+.+        .....+.
T Consensus       119 ---------------~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-Gr~a~v~~--------L~~~at~  173 (362)
T KOG0294|consen  119 ---------------LLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR-GRVAFVLN--------LKNKATL  173 (362)
T ss_pred             ---------------Eeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhc-Cccceeec--------cCCccee
Confidence                           33344 8999999999999999988886 999999999984 44333322        2223345


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~  347 (497)
                      +.|+|.| .+++.+..+ .|-+|.+.+..+.    ...+.              ...+.++.|. ++..|++| +++.|+
T Consensus       174 v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r~l~~~~l-~~~~L~vG~d~~~i~  232 (362)
T KOG0294|consen  174 VSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKRILCATFL-DGSELLVGGDNEWIS  232 (362)
T ss_pred             eEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------cccceeeeec-CCceEEEecCCceEE
Confidence            9999999 878877766 5889998875433    22222              1246777776 45566666 559999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEE--EcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      +||... ..+...+.+|...+.               ++.  -.|++.+|+++|.||.|+|||++...
T Consensus       233 ~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  233 LKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             EeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            999986 899999999998652               444  35678999999999999999998763

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=4.9e-25  Score=211.94  Aligned_cols=254  Identities=14%  Similarity=0.176  Sum_probs=175.6

Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                      .+.+++|+....   .++..+ .+|...|.+++|+|+ +..|++| .|+.|++||+...+.....+......+.+|...|
T Consensus        53 ~gvI~L~~~~r~---~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         53 IGAIRLENQMRK---PPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             eeEEEeeecCCC---ceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            345677776542   344554 899999999999996 7899999 9999999999743321111000001367899999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      .+++|+|++..+|++++.|+.|++||+++++..    ..+.              |...|.+++|+|+|.+|++++ |+.
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~--------------~~~~V~SlswspdG~lLat~s~D~~  190 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQIN--------------MPKKLSSLKWNIKGNLLSGTCVGKH  190 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEe--------------cCCcEEEEEECCCCCEEEEEecCCE
Confidence            999999998445689999999999999987543    2221              125699999999999999875 699


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC----cEEEEEcCCCCcceEEEe-
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVE-  420 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg----~i~vw~~~~~~~~~~~~~-  420 (497)
                      |+|||+++ ++.+.++.+|.+.+...          .++...|++++.+|++++.|+    .|+|||+++.......+. 
T Consensus       191 IrIwD~Rs-g~~i~tl~gH~g~~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l  259 (568)
T PTZ00420        191 MHIIDPRK-QEIASSFHIHDGGKNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI  259 (568)
T ss_pred             EEEEECCC-CcEEEEEecccCCceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence            99999997 88888899998753110          012345678999999988774    799999996433333332 


Q ss_pred             -ccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC-CCCc--ccccccCCCeEEEEEecCCC
Q 010933          421 -AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHH--ELSYNLSSKLLHLAWHPTTN  482 (497)
Q Consensus       421 -~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~-~~~~--~~~~~~~~~i~~l~~~p~~~  482 (497)
                       .+.+.+......+  ++.+     +++|..|+. ++|.. .+..  .....+..++..++|.|+..
T Consensus       260 d~~~~~L~p~~D~~--tg~l-----~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        260 DNASAPLIPHYDES--TGLI-----YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cCCccceEEeeeCC--CCCE-----EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence             2223222222222  4555     889999998 99922 2221  12234567888999998753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-24  Score=200.29  Aligned_cols=326  Identities=14%  Similarity=0.167  Sum_probs=242.0

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...|.|+||+.+.+.||.+-.||.|-||++..+                      +-....+.+++.           ..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----------------------w~~~~vi~g~~d-----------rs   71 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----------------------WFLEPVIHGPED-----------RS   71 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC----------------------ceeeEEEecCCC-----------Cc
Confidence            479999999999999999999999999999763                      344566777763           88


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |.+++|+   ++..|++.+.+|.|.-||+.+.+.+..                                           
T Consensus        72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~-------------------------------------------  105 (691)
T KOG2048|consen   72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYN-------------------------------------------  105 (691)
T ss_pred             eeeEEEc---cCCeEEeecCCceEEEEecccCceeEE-------------------------------------------
Confidence            9999994   577899999999999999998774432                                           


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                       + ....+.|++++.+|.+..++.| +||.++.++.....-.++.      .+...++.|.+++
T Consensus       106 -----------------~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRvLsls  161 (691)
T KOG2048|consen  106 -----------------I-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRVLSLS  161 (691)
T ss_pred             -----------------e-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceEEEEE
Confidence                             1 4556789999999999999999 9998888877733333333      2555679999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw  349 (497)
                      |+|++ ..++.|+.||.|++||...+....    ...........     .-..-|+++.|-.++ .|++|+. |.|++|
T Consensus       162 w~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~----~~~~~~d~l~k-----~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  162 WNPTG-TKIAGGSIDGVIRIWDVKSGQTLH----IITMQLDRLSK-----REPTIVWSVLFLRDS-TIASGDSAGTVTFW  230 (691)
T ss_pred             ecCCc-cEEEecccCceEEEEEcCCCceEE----Eeeeccccccc-----CCceEEEEEEEeecC-cEEEecCCceEEEE
Confidence            99999 889999999999999999886542    11110000000     012457778777555 6778865 999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc---eEEEeccCcce
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNEN  426 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~v  426 (497)
                      |... +.+++.+..|...+               .+++..+++.+++++|.|+.|.-|...++...   ......|..-+
T Consensus       231 d~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv  294 (691)
T KOG2048|consen  231 DSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV  294 (691)
T ss_pred             cccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence            9986 99999999998865               68999999999999999999999998876442   23345677777


Q ss_pred             eeeEeecCCCcccccccceeEeeccCc-----------------------------------eec--------CCCCC--
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQA-----------------------------------HEN--------SSSGH--  461 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-----------------------------------~iw--------~~~~~--  461 (497)
                      ++++....         .+.+|+.|..                                   .+|        ..+..  
T Consensus       295 rs~av~~~---------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~  365 (691)
T KOG2048|consen  295 RSMAVIEN---------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVIL  365 (691)
T ss_pred             eeeeeecc---------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccc
Confidence            77777652         1444444432                                   222        11100  


Q ss_pred             ---------cccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          462 ---------HELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       462 ---------~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                               ......-...|.+-+.||+|+.||.++-..++||.
T Consensus       366 ~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~  409 (691)
T KOG2048|consen  366 QGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR  409 (691)
T ss_pred             ccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence                     01112335588999999999999999977777664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.2e-25  Score=205.78  Aligned_cols=406  Identities=13%  Similarity=0.120  Sum_probs=258.4

Q ss_pred             cCCcceEEEEEcCCCC---EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~---~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      +|..+|+|+.+-|+.+   ++++|+.|+.|++|.++..                     ....+.++++|.         
T Consensus        52 GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~---------------------~~~~i~~~~g~~---------  101 (764)
T KOG1063|consen   52 GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE---------------------YLIKIYTIQGHC---------  101 (764)
T ss_pred             CCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh---------------------heEEEEeecCcc---------
Confidence            7999999999999887   8999999999999999843                     235677888888         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCC--Cccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHL  184 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  184 (497)
                         ..+.++.-    ......+.+.|+++.+|+.+..++..........         ..--+......+  ...+++.+
T Consensus       102 ---~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~---------k~~ipLcL~~~~~~~~~lla~G  165 (764)
T KOG1063|consen  102 ---KECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEI---------KEAIPLCLAALKNNKTFLLACG  165 (764)
T ss_pred             ---eeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhh---------hhHhhHHHhhhccCCcEEEEec
Confidence               44444432    1122333379999999999555422111111100         001111111112  12222333


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC---EEEEE-cCCeEEEEeCccCc--------------
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSA-DDLRINLWNLEISD--------------  246 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~-~d~~i~iwd~~~~~--------------  246 (497)
                      +.  +..+.++.-. ......+..+ .+|.+.|.+++|...+.   +++++ .|..|+||.+...+              
T Consensus       166 gs--~~~v~~~s~~-~d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~  241 (764)
T KOG1063|consen  166 GS--KFVVDLYSSS-ADSFARVAEL-EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTL  241 (764)
T ss_pred             Cc--ceEEEEeccC-CcceeEEEEe-eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccc
Confidence            22  3344444444 2222333334 89999999999976443   66777 99999999876433              


Q ss_pred             ------eeeEEee--cCC-CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc-----------cccc-----
Q 010933          247 ------QCFNIVD--MKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-----------LCDH-----  301 (497)
Q Consensus       247 ------~~~~~~~--~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------~~~~-----  301 (497)
                            .....+.  +.. .-+.+|++.|+++.|+|.+ ..|++++.|.++-+|...+..           .-..     
T Consensus       242 ~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~  320 (764)
T KOG1063|consen  242 SNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW  320 (764)
T ss_pred             cCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeeccccccccee
Confidence                  0110010  000 1245999999999999999 899999999999999765431           1000     


Q ss_pred             ------------------ccceecc-cccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCC--------
Q 010933          302 ------------------SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM--------  353 (497)
Q Consensus       302 ------------------~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~--------  353 (497)
                                        -.+.|.. .+..-.......+|...|..++|+|.|++|++. .|-+-|+|-.-.        
T Consensus       321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi  400 (764)
T KOG1063|consen  321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI  400 (764)
T ss_pred             eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee
Confidence                              0011110 000011223457899999999999999998885 456666653320        


Q ss_pred             --C------------------------Cceeeeeeecccccc------cccc----------------------------
Q 010933          354 --D------------------------STPVATFKIHEHLRP------KLCD----------------------------  373 (497)
Q Consensus       354 --~------------------------~~~~~~~~~~~~~~~------~~~~----------------------------  373 (497)
                        +                        .+.++.++.....+.      ..|+                            
T Consensus       401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~  480 (764)
T KOG1063|consen  401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN  480 (764)
T ss_pred             cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence              0                        001111110000000      0000                            


Q ss_pred             ----------------------------------------cCCCCCccceeEEEEcCCCCEEEEEeCCC-----cEEEEE
Q 010933          374 ----------------------------------------LYNNDSIFDKFECSVSGDGLHFATGSYSN-----LLRIFS  408 (497)
Q Consensus       374 ----------------------------------------~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-----~i~vw~  408 (497)
                                                              +|+  -.+.+++++.+|+++++|+++...     .|++|+
T Consensus       481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~  558 (764)
T KOG1063|consen  481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWN  558 (764)
T ss_pred             cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc--CceeEEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence                                                    111  123478999999999999998754     499999


Q ss_pred             cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCc------ccccccCCCeEEEEEecCC
Q 010933          409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH------ELSYNLSSKLLHLAWHPTT  481 (497)
Q Consensus       409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~------~~~~~~~~~i~~l~~~p~~  481 (497)
                      ..+-... +.+++|.-.|+.++|+|  ++++     |.+.+.|.. .+|...+..      .....|++-|.+.+|+|++
T Consensus       559 t~~W~~~-~~L~~HsLTVT~l~FSp--dg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde  630 (764)
T KOG1063|consen  559 TANWLQV-QELEGHSLTVTRLAFSP--DGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE  630 (764)
T ss_pred             ccchhhh-heecccceEEEEEEECC--CCcE-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence            9887554 68999999999999999  8888     999999999 999332221      2256799999999999999


Q ss_pred             CEEEEEe-CCceEEEe
Q 010933          482 NLIACAN-GNSLFFHY  496 (497)
Q Consensus       482 ~~la~~~-~~~~~i~~  496 (497)
                      .++|+++ +..+.||.
T Consensus       631 ~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWE  646 (764)
T ss_pred             ceeEEecCCceEEEEe
Confidence            9999999 66799985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3.2e-26  Score=201.71  Aligned_cols=265  Identities=15%  Similarity=0.233  Sum_probs=196.5

Q ss_pred             ccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      +.|.+.|+.+.+.|+. .++|+++..+.|.|||..+-.-.             +....+..+-..+.+|+          
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-------------~~~~~~~~Pdl~L~gH~----------  177 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-------------PKASGECRPDLRLKGHE----------  177 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-------------ccccccCCCceEEEeec----------
Confidence            4689999999999954 67788889999999999764320             00000345566788998          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..=++|+|.+ .....|++++.|++|.+||+........                                       
T Consensus       178 --~eg~glsWn~-~~~g~Lls~~~d~~i~lwdi~~~~~~~~---------------------------------------  215 (422)
T KOG0264|consen  178 --KEGYGLSWNR-QQEGTLLSGSDDHTICLWDINAESKEDK---------------------------------------  215 (422)
T ss_pred             --cccccccccc-ccceeEeeccCCCcEEEEeccccccCCc---------------------------------------
Confidence              4467899964 4456899999999999999976542100                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCcc-CceeeEEeecCCCccCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~  264 (497)
                                    ...+... +.+|...|..++|++.. .+|+++ +|+.+.|||.++ ..+..+       ...+|.+
T Consensus       216 --------------~~~p~~~-~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~-------~~~ah~~  273 (422)
T KOG0264|consen  216 --------------VVDPKTI-FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH-------SVKAHSA  273 (422)
T ss_pred             --------------cccceEE-eecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc-------cccccCC
Confidence                          0012223 38999999999999854 455666 999999999995 222222       3678999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE-e
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-D  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~-~  342 (497)
                      .|.+++|+|-+...||+||.|++|++||+|+-...   ...+             .+|...|.++.|+|... .||++ +
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~-------------e~H~dev~~V~WSPh~etvLASSg~  337 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTF-------------EGHEDEVFQVEWSPHNETVLASSGT  337 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceec-------------cCCCcceEEEEeCCCCCceeEeccc
Confidence            99999999988789999999999999999985432   2333             45778999999999765 45554 6


Q ss_pred             cCeEEEEecCCCCc-------------eeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEE
Q 010933          343 YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFS  408 (497)
Q Consensus       343 ~~~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~  408 (497)
                      |+.+.+||+..-+.             ++..-.||...+               ..+.|+|+.. .|++.++|+.+.||+
T Consensus       338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             CCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceEEEee
Confidence            79999999965332             234445666544               6899999765 577899999999999


Q ss_pred             cCC
Q 010933          409 HGV  411 (497)
Q Consensus       409 ~~~  411 (497)
                      +..
T Consensus       403 ~s~  405 (422)
T KOG0264|consen  403 MAE  405 (422)
T ss_pred             ccc
Confidence            874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=1.1e-24  Score=193.95  Aligned_cols=352  Identities=14%  Similarity=0.177  Sum_probs=238.7

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ..-|.|+.|.++|+ ++||..+|.|.||+..+.+.                       .+....|+            +.
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------------~k~~~aH~------------gg  289 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------------SKQVHAHD------------GG  289 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------------EeEeeecC------------Cc
Confidence            47899999999998 56999999999999866532                       34444888            99


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |.+++..  .+| .|++|+.|+.|..||-.-.+...++--...             .++.+....... ++.+..  .+.
T Consensus       290 v~~L~~l--r~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~-------------G~iRtv~e~~~d-i~vGTt--rN~  350 (626)
T KOG2106|consen  290 VFSLCML--RDG-TLLSGGKDRKIILWDDNYRKLRETELPEQF-------------GPIRTVAEGKGD-ILVGTT--RNF  350 (626)
T ss_pred             eEEEEEe--cCc-cEeecCccceEEeccccccccccccCchhc-------------CCeeEEecCCCc-EEEeec--cce
Confidence            9999984  555 566799999999999322222211111111             111111111111 111110  112


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                      |-.-.++..    ...+. .+|....+.++.+|+.+.++++ .|+.+++|+ + .+.....         ....+..++.
T Consensus       351 iL~Gt~~~~----f~~~v-~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~~~~~~  414 (626)
T KOG2106|consen  351 ILQGTLENG----FTLTV-QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDPAECAD  414 (626)
T ss_pred             EEEeeecCC----ceEEE-EecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCceeEee
Confidence            222222211    11111 5899999999999999999998 999999999 3 2322222         2457889999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw  349 (497)
                      |+|.|  .+|.|+..|...+.|.++..++    ..-..              ..++++|.|+|+|.+||.|+ |+.|+||
T Consensus       415 fhpsg--~va~Gt~~G~w~V~d~e~~~lv----~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  415 FHPSG--VVAVGTATGRWFVLDTETQDLV----TIHTD--------------NEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             ccCcc--eEEEeeccceEEEEecccceeE----EEEec--------------CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            99997  8999999999999999985433    22111              36899999999999999996 5999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe---------
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---------  420 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---------  420 (497)
                      .+..++........+...              .++.+.||+|+++|.+-+.|-.|..|. ..........+         
T Consensus       475 ~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~~~~ts~kDvkW~t~~c  539 (626)
T KOG2106|consen  475 RVSANGRKYSRVGKCSGS--------------PITHLDWSSDSQFLVSNSGDYEILYWK-PSECKQITSVKDVKWATYTC  539 (626)
T ss_pred             EECCCCcEEEEeeeecCc--------------eeEEeeecCCCceEEeccCceEEEEEc-cccCcccceecceeeeeeEE
Confidence            998767666665544431              137999999999999999999999994 33222211111         


Q ss_pred             ---------ccCcceeeeEeecCCCcccccccceeEeeccCc-eecC-----CCCCcccccccCCCeEEEEEecCCCEEE
Q 010933          421 ---------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-----SSGHHELSYNLSSKLLHLAWHPTTNLIA  485 (497)
Q Consensus       421 ---------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~-----~~~~~~~~~~~~~~i~~l~~~p~~~~la  485 (497)
                               .+...++.++.+.  ...+     +|+|.+.|. +++.     ......+..+|+..|++++|..+...|.
T Consensus       540 ~lGF~v~g~s~~t~i~a~~rs~--~~~~-----lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li  612 (626)
T KOG2106|consen  540 TLGFEVFGGSDGTDINAVARSH--CEKL-----LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLI  612 (626)
T ss_pred             EEEEEEecccCCchHHHhhhhh--hhhh-----hhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEE
Confidence                     2233344444443  3444     899999998 8882     2344556789999999999998777766


Q ss_pred             EEe-CCceEEEe
Q 010933          486 CAN-GNSLFFHY  496 (497)
Q Consensus       486 ~~~-~~~~~i~~  496 (497)
                      +.+ +..++.|.
T Consensus       613 ~tg~D~Si~qW~  624 (626)
T KOG2106|consen  613 STGKDTSIMQWR  624 (626)
T ss_pred             ecCCCceEEEEE
Confidence            655 66799885

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3.2e-26  Score=201.66  Aligned_cols=286  Identities=17%  Similarity=0.239  Sum_probs=200.7

Q ss_pred             ccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933           95 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  174 (497)
Q Consensus        95 ~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (497)
                      .+...++..+.+.|++.|+.+++.| .+...+++.+..+.|.|||.....-........                     
T Consensus       110 ~~~~~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~---------------------  167 (422)
T KOG0264|consen  110 AVSGKVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGEC---------------------  167 (422)
T ss_pred             ccccceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccC---------------------
Confidence            4444455555677779999999975 444567777899999999987543221110011                     


Q ss_pred             CCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEe
Q 010933          175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIV  252 (497)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~  252 (497)
                                                   .+..+ +.+|...-++++|++. .-.|++| .|+.|++||+......-..+
T Consensus       168 -----------------------------~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~  217 (422)
T KOG0264|consen  168 -----------------------------RPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV  217 (422)
T ss_pred             -----------------------------CCceE-EEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence                                         11112 2688887888999884 3356666 99999999998544321111


Q ss_pred             ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933          253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  332 (497)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  332 (497)
                       .+...+.+|+..|..++|++....+|++++.|+.+.|||+|++.  .+..+.             ..+|.+.++|++|+
T Consensus       218 -~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~-------------~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  218 -DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHS-------------VKAHSAEVNCVAFN  281 (422)
T ss_pred             -cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--CCCccc-------------ccccCCceeEEEeC
Confidence             11123789999999999999887899999999999999999731  111122             24577899999999


Q ss_pred             eCCC-EEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 010933          333 NDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       333 ~~g~-~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~  409 (497)
                      |-+. +||+|+ |++|++||+++..+++.++.+|...+               .++.|+|. ...||+++.|+++.|||+
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEec
Confidence            9655 566665 79999999998888999999999865               69999996 468889999999999999


Q ss_pred             CCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEE-EEEe
Q 010933          410 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACAN  488 (497)
Q Consensus       410 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~l-a~~~  488 (497)
                      ..-......-.+..+|                                 .+++..-.+|...|..++|+|..+.+ ++++
T Consensus       347 s~ig~eq~~eda~dgp---------------------------------pEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGP---------------------------------PELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             cccccccChhhhccCC---------------------------------cceeEEecCcccccccccCCCCCCeEEEEec
Confidence            8643331111111111                                 12233345788899999999999875 4455


Q ss_pred             -CCceEEEe
Q 010933          489 -GNSLFFHY  496 (497)
Q Consensus       489 -~~~~~i~~  496 (497)
                       ++.+.||.
T Consensus       394 eDN~LqIW~  402 (422)
T KOG0264|consen  394 EDNILQIWQ  402 (422)
T ss_pred             CCceEEEee
Confidence             44588886

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.3e-25  Score=184.55  Aligned_cols=272  Identities=14%  Similarity=0.184  Sum_probs=211.6

Q ss_pred             EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCE
Q 010933           46 YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM  125 (497)
Q Consensus        46 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~  125 (497)
                      .|++|++...|.-+++.-.+.          +| .....|.+..+-.+++|.            ++|++++.    ++.+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~----------~~-~~s~~~~l~~lF~~~aH~------------~sitavAV----s~~~   55 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPK----------GC-TDSVKPTLKPLFAFSAHA------------GSITALAV----SGPY   55 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCcc----------cc-ccccceeeeccccccccc------------cceeEEEe----ccee
Confidence            367888887777777654321          11 122345556677788998            99999998    4789


Q ss_pred             EEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcccee
Q 010933          126 FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARC  205 (497)
Q Consensus       126 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (497)
                      +++||.|.+|+|||+........                                                         
T Consensus        56 ~aSGssDetI~IYDm~k~~qlg~---------------------------------------------------------   78 (362)
T KOG0294|consen   56 VASGSSDETIHIYDMRKRKQLGI---------------------------------------------------------   78 (362)
T ss_pred             EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence            99999999999999987663321                                                         


Q ss_pred             eeeeccCCCCCeeEEEeCCCCC--EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE
Q 010933          206 QKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  282 (497)
Q Consensus       206 ~~~~~~~h~~~v~~~~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  282 (497)
                          +-.|.+.|+++.|.+.-.  .|++| +||.|.+|+.. .=.++..       +.+|.+.|+.++.+|.+ ++.++.
T Consensus        79 ----ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KLALsV  145 (362)
T KOG0294|consen   79 ----LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KLALSV  145 (362)
T ss_pred             ----eeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ceEEEE
Confidence                157899999999988664  88888 99999999988 4455554       78999999999999999 999999


Q ss_pred             eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeee
Q 010933          283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~  362 (497)
                      +.|+.+++||+-.|+.-    .+...              ......+.|+|.|.+++.+....|-+|.+.+ .+....+.
T Consensus       146 g~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~~i~  206 (362)
T KOG0294|consen  146 GGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFREIE  206 (362)
T ss_pred             cCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhhhhh
Confidence            99999999999887643    22222              1234559999999999888778999999985 66655554


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccc
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  442 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  442 (497)
                      .....                .++.|- ++..|++|++|+.|.+||.++. .....+.+|.+.|..+.+-....+.+   
T Consensus       207 ~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~---  265 (362)
T KOG0294|consen  207 NPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEY---  265 (362)
T ss_pred             ccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceE---
Confidence            44221                245554 6778999999999999999885 44589999999999999666556666   


Q ss_pred             cceeEeeccCc-eec
Q 010933          443 SNLTRGLYRQA-HEN  456 (497)
Q Consensus       443 ~~l~~~~~d~~-~iw  456 (497)
                        |+++++||. +||
T Consensus       266 --lvTaSSDG~I~vW  278 (362)
T KOG0294|consen  266 --LVTASSDGFIKVW  278 (362)
T ss_pred             --EEEeccCceEEEE
Confidence              999999999 999

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.2e-25  Score=207.52  Aligned_cols=273  Identities=14%  Similarity=0.186  Sum_probs=222.8

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .-+|...|..+++.+.. .+++++.||++++|+-..++                     +.....+.+|.          
T Consensus        10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~~~~~----------   57 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAFEGPK----------   57 (745)
T ss_pred             eccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceecccCc----------
Confidence            34688999888887654 78899999999999976543                     33445577777          


Q ss_pred             cccceeE-EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          108 IEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       108 ~~~~i~~-l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                        +-|.. ++|.+ .++..+++|+.|.+|.+|...+..                                          
T Consensus        58 --g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~------------------------------------------   92 (745)
T KOG0301|consen   58 --GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAE------------------------------------------   92 (745)
T ss_pred             --ceeeccceecc-ccCcceEeecccceEEEEecCCCC------------------------------------------
Confidence              66777 88854 566679999999999999987665                                          


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                        +..++ .+|...|.+++...++. +++| -|.++++|...   ++..       .+++|+..
T Consensus        93 ------------------P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~-------~l~gH~as  142 (745)
T KOG0301|consen   93 ------------------PLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVY-------SLQGHTAS  142 (745)
T ss_pred             ------------------chhhh-hccccceeeeecCCcCc-eEecccccceEEecch---hhhc-------ccCCcchh
Confidence                              33333 89999999999888887 8888 99999999876   3333       27899999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  345 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~  345 (497)
                      |++++.-|++  .+++|+.|..|++|.-.+  ..    +.|             .+|.+-|+.+++-+++.++-++.||.
T Consensus       143 VWAv~~l~e~--~~vTgsaDKtIklWk~~~--~l----~tf-------------~gHtD~VRgL~vl~~~~flScsNDg~  201 (745)
T KOG0301|consen  143 VWAVASLPEN--TYVTGSADKTIKLWKGGT--LL----KTF-------------SGHTDCVRGLAVLDDSHFLSCSNDGS  201 (745)
T ss_pred             eeeeeecCCC--cEEeccCcceeeeccCCc--hh----hhh-------------ccchhheeeeEEecCCCeEeecCCce
Confidence            9999999985  899999999999998733  22    444             45778999999999988888888999


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      |++|++.  +..+.++.+|...+               ++++..+++..++++++|++++||+..   ...+.+.-....
T Consensus       202 Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtts  261 (745)
T KOG0301|consen  202 IRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTS  261 (745)
T ss_pred             EEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCccc
Confidence            9999994  89999999999875               688888888999999999999999987   344666666668


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +++..+-+.  +.      +++|++||. ++|
T Consensus       262 iWsa~~L~N--gD------Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  262 IWSAKVLLN--GD------IVVGGSDGRVRVF  285 (745)
T ss_pred             eEEEEEeeC--CC------EEEeccCceEEEE
Confidence            889888763  33      799999999 999

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.4e-26  Score=185.34  Aligned_cols=247  Identities=13%  Similarity=0.128  Sum_probs=192.8

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC--CCCcEEEEEeCCCe
Q 010933          211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGF  287 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~  287 (497)
                      ..|.+.|.++...--|+.|+++ .|++|+|+.++..++....     .++.+|+++|..++|..  .| .+||+++.||.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgk   81 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDGK   81 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCce
Confidence            6899999998888889999999 9999999999966642222     35899999999999975  56 99999999999


Q ss_pred             EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC--CCEEEEE-ecCeEEEEecCCCCc--eeeeee
Q 010933          288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR-DYMNLKLWDIRMDST--PVATFK  362 (497)
Q Consensus       288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~lwd~~~~~~--~~~~~~  362 (497)
                      |.||.-.+++-.    +..+           +..|...+++++|-|.  |-.|+++ +||.|.|.+.+..+.  .-....
T Consensus        82 VIiWke~~g~w~----k~~e-----------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~  146 (299)
T KOG1332|consen   82 VIIWKEENGRWT----KAYE-----------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF  146 (299)
T ss_pred             EEEEecCCCchh----hhhh-----------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence            999998887432    2222           2457789999999986  4567777 679999999986422  223345


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCC---C-----------CEEEEEeCCCcEEEEEcCCCCcc-eEEEeccCccee
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENR  427 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~-----------~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~  427 (497)
                      .|...+               ++++|.|-   |           +.|++|+.|+.|+||+..+++-+ ...|++|.+.|+
T Consensus       147 aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  147 AHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR  211 (299)
T ss_pred             cccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence            566544               68999985   4           56999999999999999986533 456999999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eecCCCCC-----cccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~-----~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      .+++.|.. +.-  ...+|+++.||. .||..+..     ...+..+...+.+++||+.|++||+++ ++.+++|-
T Consensus       212 DVAwaP~~-gl~--~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  212 DVAWAPSV-GLP--KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhhhcccc-CCC--ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            99999973 211  346999999999 99933322     223445778899999999999999988 55688884

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.2e-24  Score=174.31  Aligned_cols=255  Identities=18%  Similarity=0.295  Sum_probs=186.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.+.|+|.+|||+|++||+|+.|..|++..+........                  ..-.+|.-|+            
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~------------------g~dle~nmhd------------  136 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT------------------GHDLEFNMHD------------  136 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc------------------CcceeeeecC------------
Confidence            4789999999999999999999999999987654321000                  1122344455            


Q ss_pred             cceeEEEEEec--CCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAA--PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s--~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      +.|..++|.-.  ..+..|++++ .|..|.+=|-..|+                                          
T Consensus       137 gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~------------------------------------------  174 (350)
T KOG0641|consen  137 GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ------------------------------------------  174 (350)
T ss_pred             CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC------------------------------------------
Confidence            89999999742  3355666654 45555555554444                                          


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                        ....+ .+|++.|.++ ++-+|-.+++| .|.+|++||++ -..++.+++.....-.-.+..
T Consensus       175 ------------------~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~glessa  233 (350)
T KOG0641|consen  175 ------------------GFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGLESSA  233 (350)
T ss_pred             ------------------cceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCcccce
Confidence                              22233 7999999876 35568899999 99999999999 556666654331111112477


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~  344 (497)
                      |.++++.|.| ++|++|-.|....+||++.++.+    +.             |..|...|.++.|+|...|+++++. .
T Consensus       234 vaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~-------------f~phsadir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  234 VAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QR-------------FHPHSADIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             eEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----ee-------------eCCCccceeEEEeCCCceEEEEecccc
Confidence            9999999999 99999999999999999998765    22             3446788999999999999999975 9


Q ss_pred             eEEEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          345 NLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       345 ~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      .|++-|++-+-   -++.....|...+               ..+.|+|..--+++.+.|.++.+|-+.
T Consensus       296 ~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  296 KIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence            99999997321   1223334455432               479999998889999999999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=4.7e-25  Score=183.58  Aligned_cols=309  Identities=17%  Similarity=0.213  Sum_probs=217.2

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .|.+.|+++.+.+ .|+|+++|+.||.|.+||++.....+-..-..+.-|        ..-...-.+|.           
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c--------~v~~~h~~~Hk-----------  101 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKC--------IVAKQHENGHK-----------  101 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheee--------eccccCCccce-----------
Confidence            4899999999998 689999999999999999987542100000000000        00001113454           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       -.|.++.|-| -|..+|.+++.|.++++||..+-+.....                                       
T Consensus       102 -y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~F---------------------------------------  140 (397)
T KOG4283|consen  102 -YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVDF---------------------------------------  140 (397)
T ss_pred             -eeeeeeEEee-ecCceeecccccceEEEeecccceeeEEe---------------------------------------
Confidence             8899999987 56779999999999999999876633221                                       


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                             .-.+.|++-+++|   ...++++| .+-.|++-|+. .+...++       +.+|..
T Consensus       141 -----------------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~-------LsGHr~  189 (397)
T KOG4283|consen  141 -----------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT-------LSGHRD  189 (397)
T ss_pred             -----------------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee-------eccccC
Confidence                                   2234566666666   24467788 99999999999 6666665       899999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccc-cCCccccccccccccEEEEeeCCCEEEEE-e
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLSR-D  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~  342 (497)
                      .|.++.|+|...-.|++|+.||.|++||+|...-+.   .++..|... +...++-..|.+.++.++|+.+|.++++. .
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf---~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF---RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeeccccee---EEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            999999999986788999999999999998753232   555554422 22223456888999999999999999875 6


Q ss_pred             cCeEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEEEE---cCCCCEEEEEeCCCcEEEEEcCCCCcceE
Q 010933          343 YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYSNLLRIFSHGVGSAGGI  417 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~s~~~dg~i~vw~~~~~~~~~~  417 (497)
                      |..+++|+...+...+..+-  .|...                .++++   +.+...++---.++.+.++++-+++.+ .
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~----------------~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i-r  329 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQT----------------TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV-R  329 (397)
T ss_pred             ccceEEeecccCccccccccccccccc----------------ccceEEEeecccceEEEEecCCeEEEEEccCceEE-E
Confidence            79999999987433333321  11111                11222   223333443444688889998888655 7


Q ss_pred             EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .+..|-..+.+.++.+  +-+.     +.+|..|+. .+|
T Consensus       330 ~l~~h~k~i~c~~~~~--~fq~-----~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  330 RLSTHLKRINCAAYRP--DFEQ-----CFTGDMNGNIYMW  362 (397)
T ss_pred             eeecccceeeEEeecC--chhh-----hhccccCCccccc
Confidence            8888888888888888  4344     778899998 999

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.7e-26  Score=184.06  Aligned_cols=256  Identities=17%  Similarity=0.228  Sum_probs=197.2

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|..+...--|++|||++.|++|+|+......+                    ...+.+|.||+           
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~-----------   56 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS-----------   56 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC-----------
Confidence            46999999999998999999999999999999987542                    25688999999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ++|..++|....-|..|++++.||.|.||.-++++..+...                                      
T Consensus        57 -GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e--------------------------------------   97 (299)
T KOG1332|consen   57 -GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE--------------------------------------   97 (299)
T ss_pred             -CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh--------------------------------------
Confidence             99999999632468899999999999999988876433211                                      


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCce-eeEEeecCCCccCCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~  264 (497)
                                           ...|...|++++|.|.  |-.|+++ .||.|.+.+.+..+. ....      ....|.-
T Consensus        98 ---------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k------i~~aH~~  150 (299)
T KOG1332|consen   98 ---------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK------IVFAHEI  150 (299)
T ss_pred             ---------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh------hhhcccc
Confidence                                 2689999999999884  5567777 999999999885522 2211      2567999


Q ss_pred             CeEEEEEeCC---C----------CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEE
Q 010933          265 VITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  331 (497)
Q Consensus       265 ~i~~~~~~~~---~----------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  331 (497)
                      .+++++|.|.   |          .+.|++|+.|..|+||+...++-..  .+             ++.+|.+.++.++|
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--e~-------------~l~~H~dwVRDVAw  215 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--ER-------------TLEGHKDWVRDVAW  215 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh--hh-------------hhhhcchhhhhhhh
Confidence            9999999986   2          1459999999999999998863221  12             24567899999999


Q ss_pred             eeCC----CEEEEEe-cCeEEEEecCCCCcee--eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933          332 ANDG----QHLLSRD-YMNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  404 (497)
Q Consensus       332 s~~g----~~l~~~~-~~~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i  404 (497)
                      .|.-    .+||+++ ||.+.||..+.+..+-  ..++.....               ++.++||+.|..|+.++.|+.+
T Consensus       216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~---------------~w~vSWS~sGn~LaVs~GdNkv  280 (299)
T KOG1332|consen  216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDV---------------VWRVSWSLSGNILAVSGGDNKV  280 (299)
T ss_pred             ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcc---------------eEEEEEeccccEEEEecCCcEE
Confidence            9963    4688875 5999999876422211  111111121               2799999999999999999999


Q ss_pred             EEEEcCC
Q 010933          405 RIFSHGV  411 (497)
Q Consensus       405 ~vw~~~~  411 (497)
                      .+|.-..
T Consensus       281 tlwke~~  287 (299)
T KOG1332|consen  281 TLWKENV  287 (299)
T ss_pred             EEEEeCC
Confidence            9998553

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.6e-25  Score=197.45  Aligned_cols=241  Identities=19%  Similarity=0.280  Sum_probs=194.8

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .+.|.++.|-.||++||+|+..|.|+|+|..+.                       ..+..+.+|+            .+
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----------------------~iLR~~~ah~------------ap  112 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----------------------VILRQLYAHQ------------AP  112 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccH-----------------------HHHHHHhhcc------------Cc
Confidence            467889999999999999999999999996543                       2367889999            99


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |..+.|+| .++..|++|+.|+.+++||+.+...+                                             
T Consensus       113 v~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~---------------------------------------------  146 (487)
T KOG0310|consen  113 VHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQ---------------------------------------------  146 (487)
T ss_pred             eeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEE---------------------------------------------
Confidence            99999975 66788889999999999999876531                                             


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                      ..+.+|++.|.+.+|+|... .+++| .||.|++||.+.....+.        --.|..+|..+
T Consensus       147 ----------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~--------elnhg~pVe~v  202 (487)
T KOG0310|consen  147 ----------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV--------ELNHGCPVESV  202 (487)
T ss_pred             ----------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE--------EecCCCceeeE
Confidence                            11379999999999999655 66778 999999999995533322        23699999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l  348 (497)
                      .+-|.| .++++++. ..+++||+-+|....   ..+             ..|...|+|+.+..++..|++|+ |+.+++
T Consensus       203 l~lpsg-s~iasAgG-n~vkVWDl~~G~qll---~~~-------------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV  264 (487)
T KOG0310|consen  203 LALPSG-SLIASAGG-NSVKVWDLTTGGQLL---TSM-------------FNHNKTVTCLRLASDSTRLLSGSLDRHVKV  264 (487)
T ss_pred             EEcCCC-CEEEEcCC-CeEEEEEecCCceeh---hhh-------------hcccceEEEEEeecCCceEeecccccceEE
Confidence            999999 88888765 479999999765321   111             12557899999999999999875 699999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      ||+.+ -+.+..++.....                .+++.+|+++.++.|..||.+.+=+...+
T Consensus       265 fd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  265 FDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             EEccc-eEEEEeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence            99865 7888888765543                69999999999999999999888755444

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.1e-26  Score=196.83  Aligned_cols=279  Identities=13%  Similarity=0.196  Sum_probs=212.5

Q ss_pred             ccccccccCcccccccccccccceeEEEEEecCCC-CEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      ++..|.||.            ++|.+++=+  |.. ..+++|+.||.|+|||+.+..+                      
T Consensus        58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~----------------------  101 (433)
T KOG0268|consen   58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQREC----------------------  101 (433)
T ss_pred             chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhh----------------------
Confidence            456778898            999999985  443 5799999999999999987663                      


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  247 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~  247 (497)
                                                            +.++ ..|.+.|..+++.. +..+.+|+|.+|+.|.++ . .
T Consensus       102 --------------------------------------~~~f-~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~-~-~  139 (433)
T KOG0268|consen  102 --------------------------------------IRTF-KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKID-G-P  139 (433)
T ss_pred             --------------------------------------hhee-ecccCceeeEEecc-cceEEecCCcceeeeecc-C-C
Confidence                                                  3333 89999999999987 444444599999999988 3 3


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      ...++        .....+..+.-+..+ ..+++++.  .|.|||.+....+    ..+..             -...|.
T Consensus       140 p~~ti--------lg~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv----~smsw-------------G~Dti~  191 (433)
T KOG0268|consen  140 PLHTI--------LGKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPV----SSMSW-------------GADSIS  191 (433)
T ss_pred             cceee--------ecccccccccccccc-ccccccCc--eeeecccccCCcc----ceeec-------------CCCcee
Confidence            44432        123455666666666 78888877  5999998754433    33322             125799


Q ss_pred             EEEEeeCCC-EEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          328 DIKFANDGQ-HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       328 ~~~~s~~g~-~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      ++.|+|... .|+++ +|+.|.|||+++ +.+++.+...-..                +.++|+|.+-.+++|++|..++
T Consensus       192 svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPeafnF~~a~ED~nlY  254 (433)
T KOG0268|consen  192 SVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEAFNFVAANEDHNLY  254 (433)
T ss_pred             EEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCccccceeeccccccce
Confidence            999999765 45554 789999999997 7777665433322                4799999877888999999999


Q ss_pred             EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccC---CCeEEEEEecCC
Q 010933          406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS---SKLLHLAWHPTT  481 (497)
Q Consensus       406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~---~~i~~l~~~p~~  481 (497)
                      .||+...+......++|.+.|..+.|+|  .|+.     +++|+.|.. +|+...+....-.-|+   +.|.++.||.|.
T Consensus       255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp--tG~E-----fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP--TGQE-----FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS  327 (433)
T ss_pred             ehhhhhhcccchhhcccceeEEEeccCC--Ccch-----hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence            9999988888888999999999999999  6777     999999999 9994443332222222   478999999999


Q ss_pred             CEEEEEeCC-ceEEEeC
Q 010933          482 NLIACANGN-SLFFHYA  497 (497)
Q Consensus       482 ~~la~~~~~-~~~i~~~  497 (497)
                      +++++|+++ ++.+|-|
T Consensus       328 kyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  328 KYIISGSDDGNVRLWKA  344 (433)
T ss_pred             cEEEecCCCcceeeeec
Confidence            999999954 5999964

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=9.5e-25  Score=178.75  Aligned_cols=238  Identities=17%  Similarity=0.277  Sum_probs=180.3

Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                      .++++|.            +.|.+++|  +.+|..|++++.|+++++|+++..+...-.                     
T Consensus        14 r~~~~~~------------~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~---------------------   58 (313)
T KOG1407|consen   14 RELQGHV------------QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL---------------------   58 (313)
T ss_pred             HHhhhhh------------hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh---------------------
Confidence            5677887            88999999  689999999999999999999876422110                     


Q ss_pred             ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCcee
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC  248 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~  248 (497)
                                                           . ..+|.+.|-.++|.| ....++++ .|.+|++||++.+ ++
T Consensus        59 -------------------------------------~-~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~-k~   99 (313)
T KOG1407|consen   59 -------------------------------------V-YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG-KC   99 (313)
T ss_pred             -------------------------------------c-ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC-cE
Confidence                                                 0 168999999999987 56677887 9999999999954 44


Q ss_pred             eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      ...+.        ....=.-+.|+|+| .++++++.|..|.+.|.++.+....    .+.              ...++.
T Consensus       100 ~~~i~--------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~----~~~--------------~~e~ne  152 (313)
T KOG1407|consen  100 TARIE--------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNE----EQF--------------KFEVNE  152 (313)
T ss_pred             EEEee--------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeeh----hcc--------------cceeee
Confidence            44321        11222457899999 9999999999999999998765421    111              134678


Q ss_pred             EEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933          329 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  407 (497)
Q Consensus       329 ~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw  407 (497)
                      ++|+.++.+++..+. |.|.|..... -+++..++.|....               .++.|+|+|+++|+|+.|..+.+|
T Consensus       153 ~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLW  216 (313)
T KOG1407|consen  153 ISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLW  216 (313)
T ss_pred             eeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeecc
Confidence            889877776666544 9999999985 89999999998542               589999999999999999999999


Q ss_pred             EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933          408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  453 (497)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~  453 (497)
                      |++..-.+ ..+.-+.-||+.+.|+-  ++++     ||+|++|..
T Consensus       217 D~~ELiC~-R~isRldwpVRTlSFS~--dg~~-----lASaSEDh~  254 (313)
T KOG1407|consen  217 DVDELICE-RCISRLDWPVRTLSFSH--DGRM-----LASASEDHF  254 (313)
T ss_pred             ChhHhhhh-eeeccccCceEEEEecc--Ccce-----eeccCccce
Confidence            99865333 55666666666666665  5555     666655433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=4.5e-25  Score=211.52  Aligned_cols=252  Identities=16%  Similarity=0.244  Sum_probs=203.5

Q ss_pred             cchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE   92 (497)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (497)
                      .|+..+.+-.  .....+|.+.|.+++|..-+.+|++|+.|.++++||..++                       .+...
T Consensus       232 ~~~~~~~~~i--~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-----------------------~C~~~  286 (537)
T KOG0274|consen  232 LWDLNNGYLI--LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-----------------------ECTHS  286 (537)
T ss_pred             EeecccceEE--EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-----------------------cEEEE
Confidence            5666554332  2234579999999999988889999999999999998887                       55889


Q ss_pred             ccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933           93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  172 (497)
Q Consensus        93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (497)
                      +.+|.            +.|.++..    ...++++|+.|.+|++|+++++....                         
T Consensus       287 l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~-------------------------  325 (537)
T KOG0274|consen  287 LQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLN-------------------------  325 (537)
T ss_pred             ecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEE-------------------------
Confidence            99999            88999987    34578888999999999999777443                         


Q ss_pred             CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEE
Q 010933          173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI  251 (497)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  251 (497)
                                                         ++ .+|..+|.++..+  +..+++| .|++|++||+. ..++++.
T Consensus       326 -----------------------------------l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~s  366 (537)
T KOG0274|consen  326 -----------------------------------LL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKS  366 (537)
T ss_pred             -----------------------------------Ee-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeee
Confidence                                               33 6699999999988  7789999 99999999999 7788876


Q ss_pred             eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC-cccccccceecccccccCCccccccccccccEEE
Q 010933          252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                             +.+|...|+++.+.+.  ..+++|+.|+.|++||+++. +.+    ..+..             |..-+..+.
T Consensus       367 -------l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~-------------h~~~v~~l~  420 (537)
T KOG0274|consen  367 -------LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI----HTLQG-------------HTSLVSSLL  420 (537)
T ss_pred             -------ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh----hhhcC-------------Ccccccccc
Confidence                   8899999999988875  57999999999999999988 443    44444             445565554


Q ss_pred             EeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec-ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          331 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      +  .+++|++++ |+.|++||... +++++.+.++ ...+               ..+++.  ...+++++.||.+++||
T Consensus       421 ~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  421 L--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             c--ccceeEeccccccEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCeeEEEe
Confidence            4  467888874 69999999986 8999999884 4432               344443  57899999999999999


Q ss_pred             cCCCCcc
Q 010933          409 HGVGSAG  415 (497)
Q Consensus       409 ~~~~~~~  415 (497)
                      ++++...
T Consensus       481 l~~~~~~  487 (537)
T KOG0274|consen  481 LRSGTLI  487 (537)
T ss_pred             cccCchh
Confidence            9998665

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=3.1e-25  Score=197.39  Aligned_cols=252  Identities=15%  Similarity=0.235  Sum_probs=197.5

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ..+.|.+-|-++.+|...+++.||+. |.|+|||+.....   +                 ..+..+..-+.        
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~---k-----------------~PvsqLdcl~r--------  464 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN---K-----------------SPVSQLDCLNR--------  464 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC---C-----------------CccccccccCc--------
Confidence            34678999999999999999999986 7899999976421   1                 12233332221        


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                        ++.|.++..  .+||+.|++|+.-.++.|||+.......-..                                    
T Consensus       465 --dnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikae------------------------------------  504 (705)
T KOG0639|consen  465 --DNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------  504 (705)
T ss_pred             --ccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhh------------------------------------
Confidence              177888888  6899999999999999999997644211000                                    


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                             +.......+.++.+||.+..+++ .||.|.|||+. .+..+..       +++|.+.
T Consensus       505 -----------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------fqGhtDG  553 (705)
T KOG0639|consen  505 -----------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHTDG  553 (705)
T ss_pred             -----------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------ccCCCCC
Confidence                                   12333457789999999999998 99999999999 5555543       8999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~  344 (497)
                      +.||..+++| ..|-+|+-|.+||-||+++++...+  ..|                ...|.++.++|++.+++.|-. +
T Consensus       554 ascIdis~dG-tklWTGGlDntvRcWDlregrqlqq--hdF----------------~SQIfSLg~cP~~dWlavGMens  614 (705)
T KOG0639|consen  554 ASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQ--HDF----------------SSQIFSLGYCPTGDWLAVGMENS  614 (705)
T ss_pred             ceeEEecCCC-ceeecCCCccceeehhhhhhhhhhh--hhh----------------hhhheecccCCCccceeeecccC
Confidence            9999999999 9999999999999999999865421  112                257999999999999999955 8


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      .+.|....  +.....+.-|+..+               .++.|++-|+++++.+.|+.+..|...-|..
T Consensus       615 ~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyGas  667 (705)
T KOG0639|consen  615 NVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  667 (705)
T ss_pred             cEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccccc
Confidence            88887765  55556666677654               7999999999999999999999999887733

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.4e-25  Score=194.94  Aligned_cols=241  Identities=15%  Similarity=0.251  Sum_probs=188.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +-.++|++++|.+++.++++.+.|+.+++|++...+                       ...+|.||+            
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----------------------~~~TLsGHt------------  261 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----------------------LRHTLSGHT------------  261 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----------------------hhhhhcccc------------
Confidence            446789999999999999999999999999998764                       488999999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|+++.|.  .....+++++.|.+|++||+....+.+                                          
T Consensus       262 dkVt~ak~~--~~~~~vVsgs~DRtiK~WDl~k~~C~k------------------------------------------  297 (459)
T KOG0288|consen  262 DKVTAAKFK--LSHSRVVSGSADRTIKLWDLQKAYCSK------------------------------------------  297 (459)
T ss_pred             cceeeehhh--ccccceeeccccchhhhhhhhhhheec------------------------------------------
Confidence            889999994  343449999999999999998866433                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                        +++.  .+.+.++..+  ...+++| .|+.|++||++... +...       .+ ..+.|++
T Consensus       298 ------------------t~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~-~~~s-------v~-~gg~vtS  346 (459)
T KOG0288|consen  298 ------------------TVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD-KTRS-------VP-LGGRVTS  346 (459)
T ss_pred             ------------------cccc--cccccceEec--ceeeeecccccceEEEeccCCc-eeeE-------ee-cCcceee
Confidence                              2211  2234455544  4567888 99999999999444 3333       22 3359999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      +..++++ ..+++++.|.++.+.|+++.+.+    ..+...       .+..+  ...+.+.|||++.|+++|+ ||.|+
T Consensus       347 l~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA~-------g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~  412 (459)
T KOG0288|consen  347 LDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSAE-------GFKCA--SDWTRVVFSPDGSYVAAGSADGSVY  412 (459)
T ss_pred             EeeccCC-eEEeeecCCCceeeeecccccEE----EEeecc-------ccccc--cccceeEECCCCceeeeccCCCcEE
Confidence            9999999 88888899999999999997765    333320       01112  3489999999999999995 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      ||++.+ +++...+.......             +|++++|+|.|..|++++.++.+.+|.
T Consensus       413 iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  413 IWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceEecC
Confidence            999986 88887776655431             237999999999999999999999993

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8.6e-25  Score=183.66  Aligned_cols=292  Identities=13%  Similarity=0.146  Sum_probs=196.6

Q ss_pred             eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeE
Q 010933           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  114 (497)
Q Consensus        35 I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~  114 (497)
                      -.|+.||+.|.+||+|+.||.|.|||+.+-.                       ....+.+|.            .+|.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s   70 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS   70 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence            6899999999999999999999999998753                       367788999            99999


Q ss_pred             EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933          115 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  194 (497)
Q Consensus       115 l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (497)
                      ++|  +++|+.|+++|.|..|++||+..|.+.....++.  .+....+.+.          ..+.++++-.   +....+
T Consensus        71 l~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s--pv~~~q~hp~----------k~n~~va~~~---~~sp~v  133 (405)
T KOG1273|consen   71 LCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS--PVWGAQWHPR----------KRNKCVATIM---EESPVV  133 (405)
T ss_pred             EEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEccC--ccceeeeccc----------cCCeEEEEEe---cCCcEE
Confidence            999  7999999999999999999999887554332221  1111111111          1122222221   111222


Q ss_pred             EeecCCccceeeeeeccCCCC-CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCeEEEEE
Q 010933          195 ANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEF  271 (497)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~  271 (497)
                      -+.... ...++..--.+... ...+..|.+.|+++++| ..|.+.++|.+ +.+++.-       +.-. ...|..+.+
T Consensus       134 i~~s~~-~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas-------~rits~~~IK~I~~  204 (405)
T KOG1273|consen  134 IDFSDP-KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVAS-------FRITSVQAIKQIIV  204 (405)
T ss_pred             EEecCC-ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeee-------eeechheeeeEEEE
Confidence            222210 01111100001111 11223578999999999 99999999999 4455543       2222 367889999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc--cccccccEEEEeeCCCEEEEEec--CeEE
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT--EIIASISDIKFANDGQHLLSRDY--MNLK  347 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~--~~i~  347 (497)
                      +..| ..|++-+.|+.||.|+++.-....+        ...+.....+.  -.+....+++|+.+|.|+++++.  ..++
T Consensus       205 s~~g-~~liiNtsDRvIR~ye~~di~~~~r--------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY  275 (405)
T KOG1273|consen  205 SRKG-RFLIINTSDRVIRTYEISDIDDEGR--------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY  275 (405)
T ss_pred             eccC-cEEEEecCCceEEEEehhhhcccCc--------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence            9999 9999999999999999873211100        00000000000  11245678999999999999854  8999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      ||.-.. |.+++.+.|..+..              ..++.|+|-...|++- ..|.+++|.....
T Consensus       276 IWE~~~-GsLVKILhG~kgE~--------------l~DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  276 IWEKSI-GSLVKILHGTKGEE--------------LLDVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             EEecCC-cceeeeecCCchhh--------------eeecccccceeeeeec-cCCceEEEEeecc
Confidence            999987 99999998877531              1479999998888887 7799999997653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.1e-25  Score=199.10  Aligned_cols=262  Identities=16%  Similarity=0.162  Sum_probs=188.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ....|++++||+.|..|++.+.....+|+|.++-+..+..+.    +.       -..-+.--+||.            .
T Consensus       213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG----DQ-------YI~Dm~nTKGHi------------a  269 (641)
T KOG0772|consen  213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG----DQ-------YIRDMYNTKGHI------------A  269 (641)
T ss_pred             cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc----ch-------hhhhhhccCCce------------e
Confidence            356899999999999888888788999999876543111000    00       111233346777            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchhee-ccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+++.+|+| .+.+.|++++.||++++|++++.+.. .+++..                                     
T Consensus       270 ~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-------------------------------------  311 (641)
T KOG0772|consen  270 ELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-------------------------------------  311 (641)
T ss_pred             eeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeec-------------------------------------
Confidence            899999976 34568999999999999999875421 111100                                     


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC--Ce
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE--VI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~i  266 (497)
                                         ...+..-++++++|+++|+.||+| .||.|.+|+......... +.    .-..|..  .|
T Consensus       312 -------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-~~----vk~AH~~g~~I  367 (641)
T KOG0772|consen  312 -------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-MK----VKDAHLPGQDI  367 (641)
T ss_pred             -------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-eE----eeeccCCCCce
Confidence                               013445578899999999999999 999999999752211111 00    1356776  89


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----  342 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----  342 (497)
                      ++++|+++| ++|++-+.|+.+++||+++.+...   .++.+-.           ..-+-+.++|||+.++|++|+    
T Consensus       368 tsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tgL~-----------t~~~~tdc~FSPd~kli~TGtS~~~  432 (641)
T KOG0772|consen  368 TSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTGLP-----------TPFPGTDCCFSPDDKLILTGTSAPN  432 (641)
T ss_pred             eEEEecccc-chhhhccCCCceeeeeccccccch---hhhcCCC-----------ccCCCCccccCCCceEEEecccccC
Confidence            999999999 999999999999999999876443   2222200           013467899999999999973    


Q ss_pred             -c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          343 -Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       343 -~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                       .  |.+.+||..+ -..+..+......+               ..+.|+|-=+.|+.|+.||.++||=
T Consensus       433 ~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  433 GMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             CCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCceEEEE
Confidence             1  7899999876 66666665554332               5899999888899999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.6e-24  Score=202.23  Aligned_cols=252  Identities=15%  Similarity=0.200  Sum_probs=193.0

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|+..-+.|+|.|+|++|.+++.||.|++|+......                 .|+.     +.-+.           
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~t-----i~~~g-----------   56 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPET-----IDISG-----------   56 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCch-----hhccC-----------
Confidence            35888999999999999999999999999999765421                 1111     11133           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++-    ++.+|++++.+++|.+|.+..++...+                                        
T Consensus        57 -~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i----------------------------------------   91 (933)
T KOG1274|consen   57 -ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI----------------------------------------   91 (933)
T ss_pred             -ceeEEEee----cccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence             66777775    455999999999999999988763221                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                       +    ..-+-++.+++++.+|+.++.| +|-.|++-+.....+...        +.+|+++|.
T Consensus        92 -----------------L----~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~--------lrgh~apVl  142 (933)
T KOG1274|consen   92 -----------------L----ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV--------LRGHDAPVL  142 (933)
T ss_pred             -----------------e----eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee--------ecccCCcee
Confidence                             1    2235588999999999999999 999999999885444333        789999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEecCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~~~i  346 (497)
                      ++.|+|.+ ++||+.+-||.|++||+.++.+......+...    .+.     .....+..++|+|+ |++++.+.++.|
T Consensus       143 ~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~----n~~-----~~s~i~~~~aW~Pk~g~la~~~~d~~V  212 (933)
T KOG1274|consen  143 QLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD----NEF-----ILSRICTRLAWHPKGGTLAVPPVDNTV  212 (933)
T ss_pred             eeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCcc----ccc-----cccceeeeeeecCCCCeEEeeccCCeE
Confidence            99999999 99999999999999999988765222222221    000     01356788999999 556666788999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      ++|+... ......+......           ..  +..+.|+|+|+|||+++.||.|.|||+++
T Consensus       213 kvy~r~~-we~~f~Lr~~~~s-----------s~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  213 KVYSRKG-WELQFKLRDKLSS-----------SK--FSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEccCC-ceeheeecccccc-----------cc--eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999975 7776666544332           11  15899999999999999999999999997

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.2e-24  Score=188.64  Aligned_cols=244  Identities=16%  Similarity=0.219  Sum_probs=193.4

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.-.|+.+.|+|+...+++++.|-.|+||......                       .......|+            
T Consensus       259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----------------------~~~~~~~h~------------  303 (506)
T KOG0289|consen  259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----------------------EPTSSRPHE------------  303 (506)
T ss_pred             CcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------------Ccccccccc------------
Confidence            689999999999999999999999999999986542                       245567888            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|+.+..  .|.|.||++++.|++..+.|+.++.+......                                      
T Consensus       304 ~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~--------------------------------------  343 (506)
T KOG0289|consen  304 EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSD--------------------------------------  343 (506)
T ss_pred             ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEee--------------------------------------
Confidence            99999999  57899999999999999999998875432110                                      


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                           ....-.+++++|+|||..|.+| .|+.+++||+.... ...       .+.+|+++|..
T Consensus       344 ---------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a-------~Fpght~~vk~  394 (506)
T KOG0289|consen  344 ---------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVA-------KFPGHTGPVKA  394 (506)
T ss_pred             ---------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccc-------cCCCCCCceeE
Confidence                                 1223458899999999999999 99999999999443 332       38899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+.+| .+|+++..|+.|++||+|..+..    +.+.. .           ....+.++.|.+.|.+|+.++ +=.|+
T Consensus       395 i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l-~-----------~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  395 ISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQL-D-----------EKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             EEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeec-c-----------ccccceeEEEcCCCCeEEeecceeEEE
Confidence            9999999 99999999999999999986543    33333 0           013599999999999999874 24444


Q ss_pred             EEecCC-CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          348 LWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       348 lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      +++-.+ ...++..+..|.+..               +.+.|....++++++|.|..++++.+
T Consensus       458 ~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  458 ICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence            444221 145566666666443               68999999999999999999998864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.1e-24  Score=190.36  Aligned_cols=251  Identities=14%  Similarity=0.148  Sum_probs=192.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|.+++.||||+|||+|+.|..|.||+.++.+                       .++.+.+|.            
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-----------------------hv~~~~ghr------------  244 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-----------------------HVKVFKGHR------------  244 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-----------------------hhhcccccc------------
Confidence            688999999999999999999999999999999874                       377799999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|.+++|  ......+++++.|+.|++|+++....+..                                         
T Consensus       245 ~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s~vet-----------------------------------------  281 (479)
T KOG0299|consen  245 GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLSYVET-----------------------------------------  281 (479)
T ss_pred             cceeeeee--ecCccceeeeecCCceEEEehhHhHHHHH-----------------------------------------
Confidence            99999999  45556899999999999999987664332                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                          +.+|.+.|.++....-++.+.+| .|+++++|++....+.+         +.++.+.+-|
T Consensus       282 --------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~sidc  332 (479)
T KOG0299|consen  282 --------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEGSIDC  332 (479)
T ss_pred             --------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCCCeee
Confidence                                27999999999999889888888 99999999997444433         5678899999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~  347 (497)
                      ++|-.+  ..|++|+.+|.|.+|++...+.+..   .-..|...+...  .-.+..+|++++..|...++++|+. |.|+
T Consensus       333 v~~In~--~HfvsGSdnG~IaLWs~~KKkplf~---~~~AHgv~~~~~--~~~~~~Witsla~i~~sdL~asGS~~G~vr  405 (479)
T KOG0299|consen  333 VAFIND--EHFVSGSDNGSIALWSLLKKKPLFT---SRLAHGVIPELD--PVNGNFWITSLAVIPGSDLLASGSWSGCVR  405 (479)
T ss_pred             EEEecc--cceeeccCCceEEEeeecccCceeE---eeccccccCCcc--ccccccceeeeEecccCceEEecCCCCceE
Confidence            999987  5799999999999999988765421   111112111110  0112258999999999999999975 9999


Q ss_pred             EEecCCCCc---eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcC
Q 010933          348 LWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHG  410 (497)
Q Consensus       348 lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~  410 (497)
                      +|-+..+.+   ++..+. -.+.               |++++|+++|+.|+ ..+...++--|-..
T Consensus       406 LW~i~~g~r~i~~l~~ls-~~Gf---------------VNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  406 LWKIEDGLRAINLLYSLS-LVGF---------------VNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             EEEecCCccccceeeecc-cccE---------------EEEEEEccCCCEEEEecccccccceeeEe
Confidence            999986433   333333 1222               37999999999555 44555555555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1e-24  Score=211.83  Aligned_cols=266  Identities=15%  Similarity=0.256  Sum_probs=195.6

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhccc---CCCCCCcccccccccccCcccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDF---TSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      ..|.+.|+|+.|+|||+|||+|+.|+.|.||+......        ...++   .-.....++....+.+|+        
T Consensus        66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~--------~~~fgs~g~~~~vE~wk~~~~l~~H~--------  129 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS--------GTVFGSTGGAKNVESWKVVSILRGHD--------  129 (942)
T ss_pred             ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC--------cccccccccccccceeeEEEEEecCC--------
Confidence            36899999999999999999999999999999874110        00000   112234678889999999        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                          ..|.+++|  +|++.+|++++.|++|.+|+..+.+..                                       
T Consensus       130 ----~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~---------------------------------------  164 (942)
T KOG0973|consen  130 ----SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELL---------------------------------------  164 (942)
T ss_pred             ----Cccceecc--CCCccEEEEecccceEEEEccccceee---------------------------------------
Confidence                88999999  689999999999999999998876532                                       


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                           +++ .+|...|..+.|.|-|++|++= +|++|++|+.. .-...+.+.-+ ..-.....
T Consensus       165 ---------------------~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~-dw~i~k~It~p-f~~~~~~T  220 (942)
T KOG0973|consen  165 ---------------------KVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS-DWGIEKSITKP-FEESPLTT  220 (942)
T ss_pred             ---------------------eee-ecccccccceEECCccCeeeeecCCceEEEEEcc-cceeeEeeccc-hhhCCCcc
Confidence                                 333 8999999999999999999997 99999999976 33344433211 11112345


Q ss_pred             CeEEEEEeCCCCcEEEEEeC----CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-----C
Q 010933          265 VITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----G  335 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g  335 (497)
                      -+..+.|+||| .+|++...    -..+.|.+-.+-+.                 ...+-+|..++.++.|+|.     .
T Consensus       221 ~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~-----------------~~~LvGH~~p~evvrFnP~lfe~~~  282 (942)
T KOG0973|consen  221 FFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKV-----------------DKDLVGHSAPVEVVRFNPKLFERNN  282 (942)
T ss_pred             eeeecccCCCc-CeecchhhccCCcceeEEEecCCcee-----------------eeeeecCCCceEEEEeChHHhcccc
Confidence            67899999999 99988744    22455555432211                 1224567889999999972     1


Q ss_pred             C------------EEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          336 Q------------HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       336 ~------------~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      +            .+|+| .|++|.||.... .+++..+..-...           +   |.+++|+|||..|+++|.||
T Consensus       283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~-----------S---I~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK-----------S---IVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             ccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC-----------c---eeeeeEcCCCCeEEEEecCC
Confidence            1            34556 469999999865 5665544322211           2   26999999999999999999


Q ss_pred             cEEEEEcCCC
Q 010933          403 LLRIFSHGVG  412 (497)
Q Consensus       403 ~i~vw~~~~~  412 (497)
                      +|.+..++..
T Consensus       348 tV~~i~Fee~  357 (942)
T KOG0973|consen  348 TVALIHFEEK  357 (942)
T ss_pred             eEEEEEcchH
Confidence            9999998763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.9e-24  Score=178.18  Aligned_cols=305  Identities=14%  Similarity=0.156  Sum_probs=209.1

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++||.||++||+++.|++|+||++..-.+.++                  +++.   .         .++. 
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH------------------r~~R---~---------nve~-  132 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH------------------RCIR---Q---------NVEY-  132 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh------------------hHhh---c---------cccC-
Confidence            5899999999999999999999999999999876332110                  1110   0         0011 


Q ss_pred             cceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      +.-+.++|  .||.+-++ ++-....+++|.+...+--. ..+.                                    
T Consensus       133 dhpT~V~F--apDc~s~vv~~~~g~~l~vyk~~K~~dG~-~~~~------------------------------------  173 (420)
T KOG2096|consen  133 DHPTRVVF--APDCKSVVVSVKRGNKLCVYKLVKKTDGS-GSHH------------------------------------  173 (420)
T ss_pred             CCceEEEE--CCCcceEEEEEccCCEEEEEEeeecccCC-CCcc------------------------------------
Confidence            23588999  56655554 44567789999875433100 0000                                    


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                        .+ -||-         ..|...|...+..+-....+++|+++ .|..|.+|+++  ++.++.++       .....-+
T Consensus       174 --~v-~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~id-------tnq~~n~  232 (420)
T KOG2096|consen  174 --FV-HIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSID-------TNQSSNY  232 (420)
T ss_pred             --cc-cccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeec-------ccccccc
Confidence              00 0110         00125677788888888899999999 99999999998  56666543       3334456


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCc--ccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSA--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      ..+.+|+| +++++++..--+++|.+--++  ....-.++|+           +.+|...|..++|+|+.+.+++.+ ||
T Consensus       233 ~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-----------LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  233 DAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-----------LKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             ceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhhe-----------eccchhheeeeeeCCCcceeEEEecCC
Confidence            78999999 999999999999999863221  1111123333           478999999999999999999975 69


Q ss_pred             eEEEEecCC------CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933          345 NLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  418 (497)
Q Consensus       345 ~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  418 (497)
                      .+++||..-      +.+.+++.....      |....+ .    ..++.+|+|+.||... ...|++|..++++....-
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl------~aag~~-p----~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~  368 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPL------HAAGSE-P----VRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL  368 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcch------hhcCCC-c----eEEEeCCCCcEEEeec-CCceEEEEcccCccchhH
Confidence            999999753      122222221110      100000 1    3799999999887554 468999999998776666


Q ss_pred             EeccCcceeeeEeecCCCcccccccceeEeeccCceec
Q 010933          419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN  456 (497)
Q Consensus       419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw  456 (497)
                      -+.|...|.++.+++  +|++     ++++++.-.++.
T Consensus       369 e~~h~~~Is~is~~~--~g~~-----~atcGdr~vrv~  399 (420)
T KOG2096|consen  369 EDIHSTTISSISYSS--DGKY-----IATCGDRYVRVI  399 (420)
T ss_pred             HHhhcCceeeEEecC--CCcE-----Eeeecceeeeee
Confidence            678999999999999  7888     888887766555

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1.9e-24  Score=182.25  Aligned_cols=299  Identities=15%  Similarity=0.204  Sum_probs=216.5

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCC-cccccccccccCcccccccccccccce
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHP-EYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      -...+.|||||..|++-+.|..+.+|++.......-            ...+ .+....+++-.+           ...|
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~------------~~~~~~~~~~~~~r~~e-----------g~tv  107 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK------------ADGPLNFSKHLSYRYQE-----------GETV  107 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccC------------CCCccccccceeEEecc-----------CCEE
Confidence            345688999999999999999999999853221000            0000 011111111111           1558


Q ss_pred             eEEEEEe-----cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          113 NRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       113 ~~l~~~~-----s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      +.-+|-+     .|+..++++.+.|.-|++||.-+|++......                                    
T Consensus       108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------------  151 (406)
T KOG2919|consen  108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------------  151 (406)
T ss_pred             EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh------------------------------------
Confidence            8888864     46778999999999999999999885542111                                    


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCC---CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                             ..|..   ...+++|+|||..|++|...+|++||+...++...........-.+..+
T Consensus       152 -----------------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  152 -----------------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             -----------------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence                                   12222   3358999999999999999999999996566544332211111234578


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--  342 (497)
                      .|.+++|+|..+..++.++....+-||.-..++.+    ..+             .+|.+.|+.+.|.++|+.|++|.  
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~ll-------------ggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLL-------------GGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCce----eee-------------cccCCCeeeEEeccCcCeecccccC
Confidence            89999999988679999999999888887665544    333             34678999999999999999985  


Q ss_pred             cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                      +..|..||++....++..+..|...-        +..|    -+...|++++|++|+.||.|++||++........+..+
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~~T--------NQRI----~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~  339 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVGDT--------NQRI----LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY  339 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhccCc--------cceE----EEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence            48999999998777888887776521        1122    37778999999999999999999999854555888999


Q ss_pred             CcceeeeEeecCCCcccccccceeEeec
Q 010933          423 KNENRKPILQAAPRARRSSLSNLTRGLY  450 (497)
Q Consensus       423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~  450 (497)
                      ...++.+.+.|.       ++.+|+++.
T Consensus       340 sd~vNgvslnP~-------mpilatssG  360 (406)
T KOG2919|consen  340 SDTVNGVSLNPI-------MPILATSSG  360 (406)
T ss_pred             cccccceecCcc-------cceeeeccC
Confidence            999999999985       445777653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=3.9e-25  Score=204.64  Aligned_cols=256  Identities=14%  Similarity=0.173  Sum_probs=203.5

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ..+...-.|.|++.||+|++||+|..-|.|+||++...                       +......+|+         
T Consensus       454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-----------------------~~~~~~eAHe---------  501 (1080)
T KOG1408|consen  454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-----------------------EYTCFMEAHE---------  501 (1080)
T ss_pred             hhcCcccceEEEEECCCcceecccCccCceEEEEehhh-----------------------hhhhheeccc---------
Confidence            33444568999999999999999999999999999865                       3366788999         


Q ss_pred             ccccceeEEEEEe-cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          107 EIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       107 ~~~~~i~~l~~~~-s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                         ..|.++.|+. .-..++|++++.|+.|.+||+...-                                         
T Consensus       502 ---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----------------------------------------  537 (1080)
T KOG1408|consen  502 ---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----------------------------------------  537 (1080)
T ss_pred             ---ceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----------------------------------------
Confidence               7799999972 2235789999999999999987543                                         


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                        ..++++ .+|...|+++.|.-.|  ..++++ .|+.|.+--.+..+. ...+ . ..+-.-.
T Consensus       538 ------------------~l~qtl-d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~-g~~f-~-r~t~t~~  595 (1080)
T KOG1408|consen  538 ------------------DLVQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-GRLF-P-RHTQTLS  595 (1080)
T ss_pred             ------------------chhhhh-cccccceeEEEEeecCCceEEEeccCchhhheehhccccC-ceec-c-ccccccc
Confidence                              122333 7999999999997766  667776 888776533331111 1110 0 0111122


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      ...++.+++.|.. +++++++.|+.|+|||+.+++..    +.|++          -.+|.+....+...|.|-|+++. 
T Consensus       596 ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~----k~FKg----------s~~~eG~lIKv~lDPSgiY~atSc  660 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQV----KSFKG----------SRDHEGDLIKVILDPSGIYLATSC  660 (1080)
T ss_pred             cceEEEeeeCCCc-ceEEEEecccceEEEecccccee----eeecc----------cccCCCceEEEEECCCccEEEEee
Confidence            4678999999998 99999999999999999999876    77776          24566788899999999999996 


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      +|.++.++|..+ ++++.++.+|...+               +.+.|.+|-++|++.+.||.|.||.+..
T Consensus       661 sdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  661 SDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceEEEEECch
Confidence            789999999997 99999999999876               7999999999999999999999999865

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.4e-24  Score=198.99  Aligned_cols=281  Identities=14%  Similarity=0.130  Sum_probs=221.5

Q ss_pred             CcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccc
Q 010933           85 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  164 (497)
Q Consensus        85 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (497)
                      +.|+...++.+|+            ..|..++.   .++..++++|.||++++|+-..++.....               
T Consensus         2 ~~Y~ls~~l~gH~------------~DVr~v~~---~~~~~i~s~sRd~t~~vw~~~~~~~l~~~---------------   51 (745)
T KOG0301|consen    2 PQYKLSHELEGHK------------SDVRAVAV---TDGVCIISGSRDGTVKVWAKKGKQYLETH---------------   51 (745)
T ss_pred             CcceeEEEeccCc------------cchheeEe---cCCeEEeecCCCCceeeeeccCcccccce---------------
Confidence            3577788899999            77888887   45668999999999999998766533211               


Q ss_pred             cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeE-EEeCC-CCCEEEEE-cCCeEEEEe
Q 010933          165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNS-DCETFVSA-DDLRINLWN  241 (497)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~-~d~~i~iwd  241 (497)
                                                                  .+.+|.+.|.. +++.+ ++-.+++| .|.+|.+|.
T Consensus        52 --------------------------------------------~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen   52 --------------------------------------------AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             --------------------------------------------ecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence                                                        12456666655 77764 44457777 999999999


Q ss_pred             CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933          242 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  321 (497)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (497)
                      .. +..++.+       +.+|+..|.+++...++ . +++||.|.++++|-...-.      ..             +.+
T Consensus        88 ~~-~~~P~~~-------LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~~-------------l~g  138 (745)
T KOG0301|consen   88 LS-QAEPLYT-------LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------YS-------------LQG  138 (745)
T ss_pred             cC-CCCchhh-------hhccccceeeeecCCcC-c-eEecccccceEEecchhhh------cc-------------cCC
Confidence            98 5556554       89999999999988887 4 9999999999999876422      22             356


Q ss_pred             ccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933          322 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  401 (497)
Q Consensus       322 ~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  401 (497)
                      |...|++++.-|++.++..+.|..|++|.-   ++.++++.+|...|               +.+++-+++ .+++++.|
T Consensus       139 H~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~V---------------RgL~vl~~~-~flScsND  199 (745)
T KOG0301|consen  139 HTASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCV---------------RGLAVLDDS-HFLSCSND  199 (745)
T ss_pred             cchheeeeeecCCCcEEeccCcceeeeccC---Cchhhhhccchhhe---------------eeeEEecCC-CeEeecCC
Confidence            789999999999985555557899999984   78999999999876               789998775 47899999


Q ss_pred             CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecC
Q 010933          402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~  480 (497)
                      |.|++|++ ++ .....+.+|.+-+.++....  +...     ++++++|+. +||+.++......-....|.++.+-++
T Consensus       200 g~Ir~w~~-~g-e~l~~~~ghtn~vYsis~~~--~~~~-----Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~N  270 (745)
T KOG0301|consen  200 GSIRLWDL-DG-EVLLEMHGHTNFVYSISMAL--SDGL-----IVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLN  270 (745)
T ss_pred             ceEEEEec-cC-ceeeeeeccceEEEEEEecC--CCCe-----EEEecCCceEEEeecCceEEEEecCccceEEEEEeeC
Confidence            99999999 44 34488999999999999655  3444     899999999 999776444333344459999999999


Q ss_pred             CCEEEEEeCCceEEEe
Q 010933          481 TNLIACANGNSLFFHY  496 (497)
Q Consensus       481 ~~~la~~~~~~~~i~~  496 (497)
                      |++++.|+++-++||+
T Consensus       271 gDIvvg~SDG~VrVfT  286 (745)
T KOG0301|consen  271 GDIVVGGSDGRVRVFT  286 (745)
T ss_pred             CCEEEeccCceEEEEE
Confidence            9988888888899997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.2e-24  Score=183.06  Aligned_cols=294  Identities=14%  Similarity=0.198  Sum_probs=224.8

Q ss_pred             cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933           86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  165 (497)
Q Consensus        86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (497)
                      .++..+++.||.            +.|+.++.  ......+.+++.|.+.+||.++++.                     
T Consensus       137 ~~~lvre~~GHk------------DGiW~Vaa--~~tqpi~gtASADhTA~iWs~Esg~---------------------  181 (481)
T KOG0300|consen  137 KFRLVRELEGHK------------DGIWHVAA--DSTQPICGTASADHTARIWSLESGA---------------------  181 (481)
T ss_pred             eEeehhhhcccc------------cceeeehh--hcCCcceeecccccceeEEeecccc---------------------
Confidence            456778889998            99999988  3444578889999999999999887                     


Q ss_pred             ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC--
Q 010933          166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL--  242 (497)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~--  242 (497)
                                                             |+.+| .+|.+.|+++.|++.+.+++++ .|++..||..  
T Consensus       182 ---------------------------------------CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av  221 (481)
T KOG0300|consen  182 ---------------------------------------CLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV  221 (481)
T ss_pred             ---------------------------------------ceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence                                                   55555 8999999999999999999999 9999999972  


Q ss_pred             ----ccCc--------------------------eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          243 ----EISD--------------------------QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       243 ----~~~~--------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                          ....                          ..-.++..+...+.+|.+.|.+..|-..| ..+++++.|.+..+||
T Consensus       222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWD  300 (481)
T ss_pred             cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeee
Confidence                1100                          00012222334577899999999999988 9999999999999999


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL  371 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~  371 (497)
                      +++++.+    ..+.+             |....+.++-+|..+++++++ |.+.++||++..-..+..|++|...+   
T Consensus       301 VEtge~v----~~LtG-------------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV---  360 (481)
T KOG0300|consen  301 VETGEVV----NILTG-------------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV---  360 (481)
T ss_pred             eccCcee----ccccC-------------cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccce---
Confidence            9999766    44444             667899999999999999885 59999999986455678899999875   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeecc
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  451 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d  451 (497)
                                  +++.|..|. .+++|++|.+|+|||+++......+++. ..+++.++++..  +.     .+|.-.++
T Consensus       361 ------------TS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g--~~-----iIAiPhDN  419 (481)
T KOG0300|consen  361 ------------TSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKG--HP-----IIAIPHDN  419 (481)
T ss_pred             ------------eEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecC--Cc-----eEEeccCC
Confidence                        789998775 4889999999999999998776666654 467788888763  22     25555555


Q ss_pred             Cc-eec-CCCCCccc-----ccccCCCeEEEEEecCC---CEEEEEeCCceEEEe
Q 010933          452 QA-HEN-SSSGHHEL-----SYNLSSKLLHLAWHPTT---NLIACANGNSLFFHY  496 (497)
Q Consensus       452 ~~-~iw-~~~~~~~~-----~~~~~~~i~~l~~~p~~---~~la~~~~~~~~i~~  496 (497)
                      .. +++ ..+..+..     -.+|...|.+++|..+.   +++-+|-+..++-|+
T Consensus       420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence            55 888 23322222     34789999999997654   334444366666665

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.3e-25  Score=202.46  Aligned_cols=273  Identities=17%  Similarity=0.230  Sum_probs=203.7

Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      .+... -|++++|++||.||.|++|++........                                             
T Consensus        29 ~Lq~d-a~~~ryLfTgGRDg~i~~W~~~~d~~~~s---------------------------------------------   62 (735)
T KOG0308|consen   29 ALQLD-APNGRYLFTGGRDGIIRLWSVTQDSNEPS---------------------------------------------   62 (735)
T ss_pred             hcccc-CCCCceEEecCCCceEEEeccccccCCcc---------------------------------------------
Confidence            34443 36778899999999999999875431110                                             


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc-eeeEEeecCCCccCCCCCCeEEEEE
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                               ..++.. ++.|...|+.+....+++.|+++ .|-+|++|+..... -+..       ++..|.+.|.++++
T Consensus        63 ---------~~~~as-me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-------tir~H~DYVkcla~  125 (735)
T KOG0308|consen   63 ---------TPYIAS-MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-------TIRTHKDYVKCLAY  125 (735)
T ss_pred             ---------cchhhh-hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-------hhhcccchheeeee
Confidence                     001122 27899999999999999999999 99999999998443 2333       37789999999999


Q ss_pred             -eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933          272 -HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  349 (497)
Q Consensus       272 -~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw  349 (497)
                       .++. .++|+|+.|+.|.+||++++...  ....+..    ........++..+|++++.++.|..+++|+ .+.+++|
T Consensus       126 ~ak~~-~lvaSgGLD~~IflWDin~~~~~--l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w  198 (735)
T KOG0308|consen  126 IAKNN-ELVASGGLDRKIFLWDINTGTAT--LVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW  198 (735)
T ss_pred             cccCc-eeEEecCCCccEEEEEccCcchh--hhhhccc----cccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence             7776 89999999999999999987320  0011111    111122237789999999999998888875 5999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeee
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP  429 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~  429 (497)
                      |.++ .+.+..+++|...+               ..+-.++||..++++|.||+|++||+...+.+ .++..|...++.+
T Consensus       199 Dprt-~~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl-~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  199 DPRT-CKKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL-ATYIVHKEGVWAL  261 (735)
T ss_pred             cccc-ccceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccccee-eeEEeccCceEEE
Confidence            9998 88888899999876               68999999999999999999999999887554 8899999999999


Q ss_pred             EeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecC
Q 010933          430 ILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       430 ~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~  480 (497)
                      ..+++       ...+.+|+.|+. ..=  ...........-..+|..+..+..
T Consensus       262 ~~~~s-------f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~  308 (735)
T KOG0308|consen  262 QSSPS-------FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEH  308 (735)
T ss_pred             eeCCC-------cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccc
Confidence            99874       233788888887 222  111222223344456666655543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=7.6e-24  Score=192.49  Aligned_cols=325  Identities=16%  Similarity=0.251  Sum_probs=220.4

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|++.|.||...|.|.+||+|+.||+|+||.+.++..                       +             +.+...
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-----------------------v-------------r~~~~d  441 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-----------------------V-------------RTVQFD  441 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-----------------------E-------------EEEeec
Confidence            6999999999999999999999999999999998742                       3             333334


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|.+|+|+|.++...||++-.+. +.|-+..-|..+...  ....   -+...+.+.                   ..+
T Consensus       442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~--~t~e---ll~~~~~~~-------------------~p~  496 (733)
T KOG0650|consen  442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG--PTKE---LLASAPNES-------------------EPD  496 (733)
T ss_pred             ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc--chhh---hhhcCCCcc-------------------CCc
Confidence            779999998877766666665554 655554433211100  0000   000000000                   012


Q ss_pred             cceEEEeecCCccce-eeeeeccCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          190 MATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                      ..+..|.-....+.+ -+... -.|...|..+.|+..|.+|++.    ....|.|.++.. .....       .+....+
T Consensus       497 ~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-~~sQ~-------PF~kskG  567 (733)
T KOG0650|consen  497 AAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-RKSQS-------PFRKSKG  567 (733)
T ss_pred             ccceeechhhhhhhccceEEE-EecCCccceeeeecCCceEEEeccCCCcceEEEEeccc-ccccC-------chhhcCC
Confidence            244455544222111 11111 4788999999999999999984    356888888872 22222       2555678


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  343 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-  343 (497)
                      .|.++.|+|.. .+|++++. ..|++||+....++.   +.+.+              ...|..|+++|.|..|+.|+. 
T Consensus       568 ~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvK---kL~tg--------------~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  568 LVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVK---KLLTG--------------SKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             ceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHH---HHhcC--------------CeeeeeeeecCCCCeEEEecCC
Confidence            89999999998 67776665 479999998866552   22222              257999999999998888865 


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      +.+..||+....++.+++..|...+               ++++|++.-.++++|+.||.+.||--.-...+.       
T Consensus       629 ~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~-------  686 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLL-------  686 (733)
T ss_pred             CeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcEEEEeeeeehhhh-------
Confidence            9999999998788999999998865               799999999999999999999998632211110       


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCC----CeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS----KLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~----~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                         ....+.                            .+..+.+|..    .|.+..|||...+|.+++.+ .+.+|.
T Consensus       687 ---qnpliV----------------------------PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  687 ---QNPLIV----------------------------PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             ---cCCceE----------------------------eeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence               000000                            1222333333    48899999999999988855 688874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.3e-25  Score=205.26  Aligned_cols=245  Identities=19%  Similarity=0.323  Sum_probs=193.1

Q ss_pred             eEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           35 VSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        35 I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      +..+.|+. +.++|||++..|.|.+||+...-                    .-+.+..|..|+            ..|+
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------------rnk~l~~f~EH~------------Rs~~  137 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------------RNKLLTVFNEHE------------RSAN  137 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc--------------------cchhhhHhhhhc------------ccee
Confidence            34566764 56899999999999999997621                    113467788999            9999


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      ++.|++ ....+|++||.||+|++||++..+.+..                                             
T Consensus       138 ~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S~~t---------------------------------------------  171 (839)
T KOG0269|consen  138 KLDFHS-TEPNILISGSQDGTVKCWDLRSKKSKST---------------------------------------------  171 (839)
T ss_pred             eeeecc-CCccEEEecCCCceEEEEeeeccccccc---------------------------------------------
Confidence            999984 5567999999999999999987663322                                             


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                                     + .+....|.++.|+| .+..|+++ +.|.+.+||++...++...       +..|.++|.++.|
T Consensus       172 ---------------~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k-------~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  172 ---------------F-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK-------LTAHNGPVLCLNW  228 (839)
T ss_pred             ---------------c-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH-------hhcccCceEEEee
Confidence                           2 45677899999998 67788888 9999999999966666543       7899999999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEE---ecCeEE
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSR---DYMNLK  347 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~---~~~~i~  347 (497)
                      +|++ .+||+|+.|+.|+|||..+.+..  ...++..              ..++.++.|-|...+ ||++   .|-.|+
T Consensus       229 hPnr-~~lATGGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~  291 (839)
T KOG0269|consen  229 HPNR-EWLATGGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVH  291 (839)
T ss_pred             cCCC-ceeeecCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccccceEE
Confidence            9998 99999999999999999876432  1123322              367999999998765 4544   358999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      |||++.+--+..++..|...+               +.++|.. |...|.+++.||.|..-.+++.
T Consensus       292 VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  292 VWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             EEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            999997777888999998865               6788876 5567889999999876655543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=184.99  Aligned_cols=295  Identities=17%  Similarity=0.190  Sum_probs=206.5

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .+.|+++.|+|....|++++.||.++||.+++...                     ..++.+.-..            .+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N---------------------~~lqS~~l~~------------fP  259 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN---------------------PKLQSIHLEK------------FP  259 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------------hhheeeeecc------------Cc
Confidence            47999999999999999999999999999987543                     2233332223            77


Q ss_pred             eeEEEEEecCCCC-EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          112 INRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       112 i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      |.+.+|  .|+|. .+++++.-..+..||+.+.+..++.......+          ..+-....+++..+++..+.  .|
T Consensus       260 i~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~----------~~~e~FeVShd~~fia~~G~--~G  325 (514)
T KOG2055|consen  260 IQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE----------KSMERFEVSHDSNFIAIAGN--NG  325 (514)
T ss_pred             cceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCccc----------chhheeEecCCCCeEEEccc--Cc
Confidence            999999  57888 88999999999999999888666543322210          01111112344445554443  44


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                      .|.+.....   .+.+..+  .-.+.|..++|+.+++.|+++ .+|.|.+||++ ...+...+      ...-.-.-+++
T Consensus       326 ~I~lLhakT---~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf------~D~G~v~gts~  393 (514)
T KOG2055|consen  326 HIHLLHAKT---KELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRF------VDDGSVHGTSL  393 (514)
T ss_pred             eEEeehhhh---hhhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEE------eecCccceeee
Confidence            555544432   2233322  335678899999999998887 99999999999 45666553      11122233677


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec---CeE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL  346 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i  346 (497)
                      +.++++ .+||+|+..|.|.|||.++-..           ...+.+...+......|++|.|+|++++||.++.   ..+
T Consensus       394 ~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal  461 (514)
T KOG2055|consen  394 CISLNG-SYLATGSDSGIVNIYDGNSCFA-----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL  461 (514)
T ss_pred             eecCCC-ceEEeccCcceEEEeccchhhc-----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce
Confidence            888999 8999999999999999765321           1223334445556678999999999999988753   889


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      |+-.+.. .....-+.....            .+..+++++|||.+.+||.|..+|++.+|.+.
T Consensus       462 rLVHvPS-~TVFsNfP~~n~------------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  462 RLVHVPS-CTVFSNFPTSNT------------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEeccc-eeeeccCCCCCC------------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9888764 443333433322            33345899999999999999999999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=181.01  Aligned_cols=278  Identities=15%  Similarity=0.202  Sum_probs=193.0

Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                      +.+.+.++.++-.+-++..+.++-+..|.|+||++..... .+...                                  
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~-~l~~~----------------------------------  192 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN-ALSEP----------------------------------  192 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh-hhcCc----------------------------------
Confidence            3444778888775444555666668999999999865321 10000                                  


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                           ...+-+    ...+++.++ .+|...=+.++|||- ...|++| .-+.|++|...+ + ..+   ..+..+.+|+
T Consensus       193 -----~~~~~~----s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g-~W~---vd~~Pf~gH~  257 (440)
T KOG0302|consen  193 -----GLEVKD----SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-G-SWK---VDQRPFTGHT  257 (440)
T ss_pred             -----cccccc----cccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc-C-cee---ecCccccccc
Confidence                 000000    133566666 899999999999993 2357888 889999999884 3 222   1223477899


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  343 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  343 (497)
                      ..|-.++|+|....+|++||-||.|+|||+|.+....    .+.           .+.|.+.|+.+.|+.+-.+||+|+|
T Consensus       258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~----~~~-----------~kAh~sDVNVISWnr~~~lLasG~D  322 (440)
T KOG0302|consen  258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA----AVS-----------TKAHNSDVNVISWNRREPLLASGGD  322 (440)
T ss_pred             cchhhhccCCccCceEEeeecCceEEEEEecCCCccc----eeE-----------eeccCCceeeEEccCCcceeeecCC
Confidence            9999999999987899999999999999999874321    111           1456688999999998889999976


Q ss_pred             -CeEEEEecCC--CCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcce---
Q 010933          344 -MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGG---  416 (497)
Q Consensus       344 -~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~---  416 (497)
                       |.++|||+++  .++++..++.|..++               +++.|+|. ...|+++|.|..|.+||+.......   
T Consensus       323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~  387 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID  387 (440)
T ss_pred             CceEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence             9999999985  357888999999875               79999994 5688899999999999987542210   


Q ss_pred             -EEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCE-EEEEeCCceEE
Q 010933          417 -ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNL-IACANGNSLFF  494 (497)
Q Consensus       417 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~-la~~~~~~~~i  494 (497)
                       .-..+-..-...+.|..                                 ...+.|..|.||+.-+- |++.+.+++.|
T Consensus       388 ~~a~~~L~dlPpQLLFVH---------------------------------qGQke~KevhWH~QiPG~lvsTa~dGfnV  434 (440)
T KOG0302|consen  388 QEAAEGLQDLPPQLLFVH---------------------------------QGQKEVKEVHWHRQIPGLLVSTAIDGFNV  434 (440)
T ss_pred             cccccchhcCCceeEEEe---------------------------------cchhHhhhheeccCCCCeEEEecccceeE
Confidence             00111001111122211                                 12347789999998755 45555889998


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |.
T Consensus       435 fk  436 (440)
T KOG0302|consen  435 FK  436 (440)
T ss_pred             EE
Confidence            85

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=1.4e-23  Score=184.88  Aligned_cols=262  Identities=18%  Similarity=0.232  Sum_probs=194.8

Q ss_pred             CCcceEEEEEcCCC--CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        31 h~~~I~~i~~sp~g--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +.+.|++++|+|..  +++|+|+..|.|-+||+.+.+.                   .+.-+..+..|.           
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs-----------  234 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHS-----------  234 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCC-----------
Confidence            67899999999964  5899999999999999964322                   345566778898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       .+|.+|.|+| .+...++++|.||+|++-|++++....+...                                     
T Consensus       235 -~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-------------------------------------  275 (498)
T KOG4328|consen  235 -GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-------------------------------------  275 (498)
T ss_pred             -ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc-------------------------------------
Confidence             9999999976 4556899999999999999998764433211                                     


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                            ......+.++.|+.+...++.+ .=|...+||.++.+..+..       +.-|+..|.
T Consensus       276 ----------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~kKI~  326 (498)
T KOG4328|consen  276 ----------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHKKKIT  326 (498)
T ss_pred             ----------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhhcccc
Confidence                                  1123356678888877777777 6669999999976665543       567888999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-EecCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i  346 (497)
                      +++++|..+.+||+++.|++.+|||+|.-.....             +....-.|...|.++.|||.+-.|++ +.|..|
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I  393 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI  393 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCC-------------cceecccccceeeeeEEcCCCCceEeeccCCce
Confidence            9999999989999999999999999987432211             11122467889999999998765666 567999


Q ss_pred             EEEecC---CCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          347 KLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       347 ~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      +|||..   ....+..++......-       .--..   ....|.|+..++++|-.-..|-|+|-..++
T Consensus       394 Rv~dss~~sa~~~p~~~I~Hn~~t~-------RwlT~---fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  394 RVFDSSCISAKDEPLGTIPHNNRTG-------RWLTP---FKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             EEeecccccccCCccceeeccCccc-------ccccc---hhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            999983   2234444443221110       00011   368999999999999999999999977663

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.4e-23  Score=171.01  Aligned_cols=270  Identities=11%  Similarity=0.199  Sum_probs=191.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|.+-|.|+.|.+-|+.+|+|+.|++|+|||.+....                   .+.+....+.|+           
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~-----------   59 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD-----------   59 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC-----------
Confidence            35889999999999999999999999999999765432                   567778889999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|..+.|.+..=|+.+++++.|+++.||.-.......                                         
T Consensus        60 -~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~-----------------------------------------   97 (361)
T KOG2445|consen   60 -GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA-----------------------------------------   97 (361)
T ss_pred             -CcEEEEEecCccccceEEEEecCCceeeeeeccccccc-----------------------------------------
Confidence             99999999865568999999999999999753111000                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCceeeEEeecC------CCcc
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMK------PSNM  259 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~~  259 (497)
                        .-+-|         ..++.+......|+++.|.|  -|-.|+++ .||.++||+.-... .+..+.+.      +...
T Consensus        98 --~~~~W---------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   98 --HGRRW---------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             --cccee---------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccchhhhhhhhccCCc
Confidence              00011         11112256678899999998  46677888 99999999876222 12211111      0123


Q ss_pred             CCCCCCeEEEEEeCCC--CcEEEEEeCC-----CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933          260 DDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  332 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~--~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  332 (497)
                      ..+..+..|+.|+|..  +.+||+|+.+     +.++||....+.....  ++           ..+.+|..+|+.++|.
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~--kv-----------a~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL--KV-----------AELPDHTDPIRDISWA  232 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee--ee-----------hhcCCCCCcceeeeec
Confidence            3466778899999763  3578888776     5788888765431111  11           1234677999999999


Q ss_pred             eCC----CEEEEEe-cCeEEEEecCCCC-------------------ceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933          333 NDG----QHLLSRD-YMNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  388 (497)
Q Consensus       333 ~~g----~~l~~~~-~~~i~lwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (497)
                      |+-    .+||+++ || |+||.+....                   +.+..+..|...+               +.+.|
T Consensus       233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------Wrv~w  296 (361)
T KOG2445|consen  233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------WRVRW  296 (361)
T ss_pred             cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------EEEEE
Confidence            963    4677775 47 9999987311                   1233445555543               89999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCC
Q 010933          389 SGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       389 s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      .-.|..|++.|.||.|++|...-
T Consensus       297 NmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             eeeeeEEeecCCCceeeehhhhh
Confidence            99999999999999999998653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.4e-24  Score=199.65  Aligned_cols=234  Identities=16%  Similarity=0.168  Sum_probs=180.5

Q ss_pred             CeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          216 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       216 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      .+..+.|.. +.++|+++ ..|.|.+||+....+....     ..+..|+..++++.|++..+++|++|+.||.|++||+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl  163 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL  163 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence            345677764 56788999 9999999999852221111     1267899999999999999899999999999999999


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEec-CeEEEEecCCCCceeeeeeecccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  371 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~  371 (497)
                      |..+..    ..+..             ....|..+.|+|. +.+++++.| |.+++||++...++...+.+|.+++   
T Consensus       164 R~~~S~----~t~~~-------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV---  223 (839)
T KOG0269|consen  164 RSKKSK----STFRS-------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV---  223 (839)
T ss_pred             eccccc----ccccc-------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce---
Confidence            986543    22222             3468999999994 567777877 9999999999889999999999986   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeec-
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY-  450 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-  450 (497)
                                  .++.|+|++.+|||||.|+.|+||++.+.+.....--....++.++.|.|.+...      ||+++. 
T Consensus       224 ------------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h------LAtcsmv  285 (839)
T KOG0269|consen  224 ------------LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH------LATCSMV  285 (839)
T ss_pred             ------------EEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch------hhhhhcc
Confidence                        7899999999999999999999999987655434444556899999999975533      555553 


Q ss_pred             -cCc-eec---CCCCCcccccccCCCeEEEEEec-CCCEEEEEeCCce
Q 010933          451 -RQA-HEN---SSSGHHELSYNLSSKLLHLAWHP-TTNLIACANGNSL  492 (497)
Q Consensus       451 -d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p-~~~~la~~~~~~~  492 (497)
                       |-. +||   .+.-+...+..|+..++.++|-. |-..|-+++.|++
T Consensus       286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence             333 999   33344556778999999999976 3445666665553

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=2.3e-23  Score=190.75  Aligned_cols=301  Identities=18%  Similarity=0.209  Sum_probs=211.6

Q ss_pred             EEEEcC---CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           37 AIEFDK---TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        37 ~i~~sp---~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      +..|++   ....||.+.+||.|.++|.....-.                 ++-.-+.....|.            +.|.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-----------------~ee~~lk~~~aH~------------nAif  104 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-----------------LEERQLKKPLAHK------------NAIF  104 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcc-----------------hhhhhhccccccc------------ceeE
Confidence            467776   3457999999999999998764320                 0112245567788            9999


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      ++.|.  |....|++++.|.++++||+.+..+...                                             
T Consensus       105 Dl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~---------------------------------------------  137 (720)
T KOG0321|consen  105 DLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGG---------------------------------------------  137 (720)
T ss_pred             eeccC--CCceeEEEccCCceeeeeeeccceeecc---------------------------------------------
Confidence            99995  5667899999999999999998774431                                             


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCcee------eE---Ee-----ecCC-
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC------FN---IV-----DMKP-  256 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~------~~---~~-----~~~~-  256 (497)
                                   .. +.+|...|.+++|.|.. ..|++| .||.|.|||++-....      ..   ..     ..++ 
T Consensus       138 -------------~~-~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~  203 (720)
T KOG0321|consen  138 -------------RL-NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL  203 (720)
T ss_pred             -------------ee-ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence                         01 26999999999999954 566778 9999999999843310      00   00     0011 


Q ss_pred             ----CccCCCCCCeEE---EEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCccccccc---ccc
Q 010933          257 ----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI---IAS  325 (497)
Q Consensus       257 ----~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  325 (497)
                          .+...+...|.+   +.+..|. ..||+++. |+.|+|||++..........         .....+.-|   .-.
T Consensus       204 ~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep---------~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  204 KKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEP---------RGSDKYPTHSKRSVG  273 (720)
T ss_pred             hccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCC---------CcccCccCcccceee
Confidence                122344555555   5566666 88999988 99999999997543211100         000011111   245


Q ss_pred             ccEEEEeeCCCEEEE-EecCeEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933          326 ISDIKFANDGQHLLS-RDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  403 (497)
Q Consensus       326 i~~~~~s~~g~~l~~-~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  403 (497)
                      +.++..+..|.+|++ +.|+.|++|++...+ .++..+.++...           ..+  ..-..+||+.+|++|+.|..
T Consensus       274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-----------sf~--vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-----------SFY--VKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-----------eee--eeeecCCCCceEeccCCCcc
Confidence            777777777887766 588999999997522 345555554432           121  35678899999999999999


Q ss_pred             EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .++|.+.+.+.....+.+|.-.|..+++.|......      +++++|-. ++|
T Consensus       341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v------~TcSdD~~~kiW  388 (720)
T KOG0321|consen  341 AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV------ATCSDDFRVKIW  388 (720)
T ss_pred             eeeeeecCccCChhhhhCcceEEEEEeeccccCCCc------eeeccCcceEEE
Confidence            999999998888888999999999999999755554      66688877 999

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.6e-23  Score=182.95  Aligned_cols=236  Identities=18%  Similarity=0.279  Sum_probs=181.0

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..                       +..+.+|=            ..
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-----------------------L~v~~aHY------------Q~  125 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-----------------------LNVLSAHY------------QS  125 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------------HHHHHhhc------------cc
Confidence            57899999999999999999999999999999854                       77788998            88


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |+++.|  +.|+.+|++||.||.|.+|.+..--                                               
T Consensus       126 ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv-----------------------------------------------  156 (476)
T KOG0646|consen  126 ITCLKF--SDDGSHIITGSKDGAVLVWLLTDLV-----------------------------------------------  156 (476)
T ss_pred             eeEEEE--eCCCcEEEecCCCccEEEEEEEeec-----------------------------------------------
Confidence            999999  6899999999999999999875421                                               


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                          +.......+++..+ ..|+-+|+++...+.  ...++++ .|.++++||+. .+..+..+        .....+.+
T Consensus       157 ----~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti--------~fp~si~a  222 (476)
T KOG0646|consen  157 ----SADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTI--------TFPSSIKA  222 (476)
T ss_pred             ----ccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEE--------ecCCccee
Confidence                11111122355555 899999999988654  4467777 99999999999 45444432        24578999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc--cccEEEEeeCCCEEEEEe-cCe
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      ++.+|.+ ..+++|+.+|.|.+.++..-.-....+..-.. .........+.+|.+  .|+|++++-||.+|++|+ ||.
T Consensus       223 v~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~  300 (476)
T KOG0646|consen  223 VALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK  300 (476)
T ss_pred             EEEcccc-cEEEecCCcceEEeeehhcCCccccccccccc-ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence            9999999 99999999999999988653311110011111 222334455677887  999999999999999996 599


Q ss_pred             EEEEecCCCCceeeeeeeccccc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLR  368 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~  368 (497)
                      ++|||+.. .++++++....++|
T Consensus       301 VcvWdi~S-~Q~iRtl~~~kgpV  322 (476)
T KOG0646|consen  301 VCVWDIYS-KQCIRTLQTSKGPV  322 (476)
T ss_pred             EEEEecch-HHHHHHHhhhcccc
Confidence            99999986 78888877555554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.2e-22  Score=175.88  Aligned_cols=279  Identities=16%  Similarity=0.231  Sum_probs=205.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|++|.|+  |....+++++.|++++||.+++..-..+..                                       
T Consensus       214 ~~I~sv~FH--p~~plllvaG~d~~lrifqvDGk~N~~lqS---------------------------------------  252 (514)
T KOG2055|consen  214 GGITSVQFH--PTAPLLLVAGLDGTLRIFQVDGKVNPKLQS---------------------------------------  252 (514)
T ss_pred             CCceEEEec--CCCceEEEecCCCcEEEEEecCccChhhee---------------------------------------
Confidence            889999995  677899999999999999998654222110                                       


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i  266 (497)
                                         . .-...+|.+..|.|+|. .++++ ....++.||+. ..+..++   +  .+.++ +..+
T Consensus       253 -------------------~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~---~--~~~g~e~~~~  306 (514)
T KOG2055|consen  253 -------------------I-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKL---K--PPYGVEEKSM  306 (514)
T ss_pred             -------------------e-eeccCccceeeecCCCceEEEecccceEEEEeecc-ccccccc---c--CCCCcccchh
Confidence                               0 23356899999999999 77777 99999999998 4444433   1  12233 3567


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~  345 (497)
                      ....+++++ ++|+..+..|.|.+....+++.+    ..+..              .+.+..++|+.+|+.|++. ++|.
T Consensus       307 e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  307 ERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             heeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCce
Confidence            788999999 99999999999999999998776    44444              3679999999999877664 6799


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----CcceEEEe
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITVE  420 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~-----~~~~~~~~  420 (497)
                      |.+||++. ..++.++......-              -++++.++++.|||+|+..|.|.|||.++-     ......+.
T Consensus       368 V~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d  432 (514)
T KOG2055|consen  368 VYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD  432 (514)
T ss_pred             EEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence            99999997 68888776544321              158999999999999999999999996542     12234555


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeeccCc---eecC-CCCCcc-ccc---ccCCCeEEEEEecCCCEEEEEeCCc-
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA---HENS-SSGHHE-LSY---NLSSKLLHLAWHPTTNLIACANGNS-  491 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~---~iw~-~~~~~~-~~~---~~~~~i~~l~~~p~~~~la~~~~~~-  491 (497)
                      .-...|..+.|++  ++++     ||.++.-..   ++=+ +..... .++   ..-..|++|+|+|.+.+||+|...+ 
T Consensus       433 NLtt~Itsl~Fn~--d~qi-----LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  433 NLTTAITSLQFNH--DAQI-----LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             hhheeeeeeeeCc--chhh-----hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence            6677899999999  7777     777776655   2221 111110 111   1123789999999999999999554 


Q ss_pred             eEEEe
Q 010933          492 LFFHY  496 (497)
Q Consensus       492 ~~i~~  496 (497)
                      +.+|.
T Consensus       506 v~l~k  510 (514)
T KOG2055|consen  506 VHLFK  510 (514)
T ss_pred             eeeEe
Confidence            77774

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.4e-24  Score=201.45  Aligned_cols=218  Identities=16%  Similarity=0.274  Sum_probs=177.3

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.++..  ...++.+++|+.|..+.+|.+..-..                                            
T Consensus        29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~~--------------------------------------------   62 (825)
T KOG0267|consen   29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPNA--------------------------------------------   62 (825)
T ss_pred             hhhceeee--eccceeeccCCCceeeccccccCCch--------------------------------------------
Confidence            77888887  35678899999999999998754321                                            


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                      +..+ .+|..+|.++.|+++..+|++| .+|+|++||++ ..+.+.       ++.+|...+.+
T Consensus        63 ----------------i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~s  117 (825)
T KOG0267|consen   63 ----------------ITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITS  117 (825)
T ss_pred             ----------------hhee-eccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcce
Confidence                            1112 7999999999999999999999 99999999999 555554       38899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~  347 (497)
                      +.|+|.+ .++|.++.|+.+++||.+.....    +.+..             |...+..+.|+|+|++++.|.+ ..++
T Consensus       118 v~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  118 VDFHPYG-EFFASGSTDTDLKIWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             eeeccce-EEeccccccccceehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceee
Confidence            9999999 89999999999999999965443    44433             5678999999999999999865 9999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      |||+.. ++.+..|+.|+..+               ..+.|+|..-++++||.|+++++||+++-+.+ ...+.....|.
T Consensus       180 i~d~~a-gk~~~ef~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I-~s~~~~~~~v~  242 (825)
T KOG0267|consen  180 IWDLTA-GKLSKEFKSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI-SSGKPETDGVR  242 (825)
T ss_pred             eecccc-cccccccccccccc---------------cccccCchhhhhccCCCCceeeeeccceeEEe-eccCCccCCce
Confidence            999986 99999999998865               57899999999999999999999999976332 33333344455


Q ss_pred             eeEeec
Q 010933          428 KPILQA  433 (497)
Q Consensus       428 ~~~~~~  433 (497)
                      +.+|.+
T Consensus       243 ~~~fn~  248 (825)
T KOG0267|consen  243 SLAFNP  248 (825)
T ss_pred             eeeecC
Confidence            555544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=4.9e-21  Score=180.91  Aligned_cols=330  Identities=12%  Similarity=0.156  Sum_probs=236.3

Q ss_pred             eEEEEEcCCC--CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           35 VSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        35 I~~i~~sp~g--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      |+++. +|.-  +.++.|+.+|.++||++.+++.                       +.+++++.            ..|
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----------------------v~~f~~~~------------s~I  205 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV-----------------------VYTFQEFF------------SRI  205 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE-----------------------EEEecccc------------cce
Confidence            66664 5542  5688999999999999999854                       88899998            889


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      +++.=  +|-=..++.|..+|+|.++++..++.+.                                             
T Consensus       206 T~ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~---------------------------------------------  238 (910)
T KOG1539|consen  206 TAIEQ--SPALDVVAIGLENGTVIIFNLKFDKILM---------------------------------------------  238 (910)
T ss_pred             eEecc--CCcceEEEEeccCceEEEEEcccCcEEE---------------------------------------------
Confidence            99987  4555689999999999999998877332                                             


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                     .| +...+.|++++|..||+.+. +| ..|.+.+||++ .++.....      ...|.+.|....
T Consensus       239 ---------------sF-k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe-~kkl~~v~------~nah~~sv~~~~  295 (910)
T KOG1539|consen  239 ---------------SF-KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE-KKKLINVT------RNAHYGSVTGAT  295 (910)
T ss_pred             ---------------EE-EccccceeEEEeccCCCeeEEeccCCceEEEEEcC-CCeeeeee------eccccCCcccce
Confidence                           22 22258999999999988665 46 78999999999 55555442      457889999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCC-----------------------------------
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-----------------------------------  315 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  315 (497)
                      |-|.. ..+++++.|+.+++|-..++.-....++.-.+|...+..                                   
T Consensus       296 fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~  374 (910)
T KOG1539|consen  296 FLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG  374 (910)
T ss_pred             ecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc
Confidence            99988 899999999998888555321110000110110000000                                   


Q ss_pred             -------------c-----------------------------------------------------cccccccccccEE
Q 010933          316 -------------K-----------------------------------------------------SFFTEIIASISDI  329 (497)
Q Consensus       316 -------------~-----------------------------------------------------~~~~~~~~~i~~~  329 (497)
                                   .                                                     ..+......++++
T Consensus       375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av  454 (910)
T KOG1539|consen  375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV  454 (910)
T ss_pred             ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence                         0                                                     0011223678899


Q ss_pred             EEeeCCCEEEEEec-CeEEEEecCCCCceeeee---eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          330 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       330 ~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      +.++-|++.+.|.. |.|-+|+++. +....++   ..|...+               ++++...-++.+++++.+|.++
T Consensus       455 ~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V---------------~gla~D~~n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  455 CVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEV---------------TGLAVDGTNRLLVSAGADGILK  518 (910)
T ss_pred             EEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCce---------------eEEEecCCCceEEEccCcceEE
Confidence            99999999999854 9999999997 7777777   4676654               7899998899999999999999


Q ss_pred             EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCC
Q 010933          406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN  482 (497)
Q Consensus       406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~  482 (497)
                      +||..... ....++- ...+..+..+..       ...++.+.+|=. .+.  .+........+|...|++++|||||+
T Consensus       519 fw~f~~k~-l~~~l~l-~~~~~~iv~hr~-------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  519 FWDFKKKV-LKKSLRL-GSSITGIVYHRV-------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             EEecCCcc-eeeeecc-CCCcceeeeeeh-------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            99998764 2233332 222333333321       123566655555 555  33344566789999999999999999


Q ss_pred             EEEEEe-CCceEEEe
Q 010933          483 LIACAN-GNSLFFHY  496 (497)
Q Consensus       483 ~la~~~-~~~~~i~~  496 (497)
                      +|++++ +..+++|.
T Consensus       590 WlisasmD~tIr~wD  604 (910)
T KOG1539|consen  590 WLISASMDSTIRTWD  604 (910)
T ss_pred             EEEEeecCCcEEEEe
Confidence            999999 56799996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.4e-20  Score=173.97  Aligned_cols=394  Identities=15%  Similarity=0.116  Sum_probs=261.4

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ..+.|++++.+|.++.++.|+.||.+..++...+++                     ++...|.-.+            +
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------------------~~~r~l~rq~------------s  155 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------------------TYKRSLMRQK------------S  155 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------------------EEEeeccccc------------c
Confidence            367999999999999999999999888888776654                     3444454445            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      +|.++.|  ++++..+++|+.||.|++||+..+....+.+......      ...+..++.....-....++++.  +.|
T Consensus       156 RvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------~k~~~~iVWSv~~Lrd~tI~sgD--S~G  225 (691)
T KOG2048|consen  156 RVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------SKREPTIVWSVLFLRDSTIASGD--SAG  225 (691)
T ss_pred             eEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeeccccc------ccCCceEEEEEEEeecCcEEEec--CCc
Confidence            8999999  7899999999999999999999887555332222110      00011111111122233344443  478


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                      .+++||....   ..++.+ ..|...|.+++.++++..++++ .|+.|..|.....+.....    ......|...+.++
T Consensus       226 ~V~FWd~~~g---TLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~----~~~r~~h~hdvrs~  297 (691)
T KOG2048|consen  226 TVTFWDSIFG---TLIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI----NSRRDLHAHDVRSM  297 (691)
T ss_pred             eEEEEcccCc---chhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee----eccccCCcccceee
Confidence            9999999854   344444 6889999999999998888887 9999999887744432111    12356788999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccc-------------------cccceeccccccc--------C-------C
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-------------------HSARILRDAAESH--------G-------S  315 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------------~~~~~~~~~~~~~--------~-------~  315 (497)
                      +..++   .+++|+.|..+.+--.+..+...                   .....+..|....        .       -
T Consensus       298 av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~L  374 (691)
T KOG2048|consen  298 AVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHL  374 (691)
T ss_pred             eeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhh
Confidence            99875   68899999988887665421110                   0001111111000        0       0


Q ss_pred             ccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE
Q 010933          316 KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  395 (497)
Q Consensus       316 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  395 (497)
                      ...+......|.+.++||+|++++.++-...++|.++... .+..........          ...+...+.|+-|+..+
T Consensus       375 lkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~----------~~~~a~~i~ftid~~k~  443 (691)
T KOG2048|consen  375 LKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPL----------ALLDASAISFTIDKNKL  443 (691)
T ss_pred             eeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchh----------hhccceeeEEEecCceE
Confidence            0011223457899999999999999988899999998644 343333222211          11122578899898888


Q ss_pred             EEEe-CCCcEEEEEcCCCCcce---EEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCccc--cccc
Q 010933          396 ATGS-YSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL--SYNL  468 (497)
Q Consensus       396 ~s~~-~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~--~~~~  468 (497)
                      +.++ .+..+.+++.++.....   ..-++....|..++.++  +|.+     +|..+.++. .+|+.......  ....
T Consensus       444 ~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss--dG~y-----iaa~~t~g~I~v~nl~~~~~~~l~~rl  516 (691)
T KOG2048|consen  444 FLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS--DGNY-----IAAISTRGQIFVYNLETLESHLLKVRL  516 (691)
T ss_pred             EEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC--CCCE-----EEEEeccceEEEEEcccceeecchhcc
Confidence            8777 77888898887754321   11124556788888888  7877     899998888 99954433222  2256


Q ss_pred             CCCeEEEEEecC-CCEEEEEe-CCceEEEe
Q 010933          469 SSKLLHLAWHPT-TNLIACAN-GNSLFFHY  496 (497)
Q Consensus       469 ~~~i~~l~~~p~-~~~la~~~-~~~~~i~~  496 (497)
                      ...|+.++++|. -+.|+++. ++.+|-|.
T Consensus       517 n~~vTa~~~~~~~~~~lvvats~nQv~efd  546 (691)
T KOG2048|consen  517 NIDVTAAAFSPFVRNRLVVATSNNQVFEFD  546 (691)
T ss_pred             CcceeeeeccccccCcEEEEecCCeEEEEe
Confidence            689999999964 56677776 55577664

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=6.7e-22  Score=164.91  Aligned_cols=304  Identities=13%  Similarity=0.157  Sum_probs=200.6

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|+++..-+ ..|+++++|+.||.|.+||+++.....-..+-..                                   
T Consensus        44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k-----------------------------------   87 (397)
T KOG4283|consen   44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK-----------------------------------   87 (397)
T ss_pred             Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeh-----------------------------------
Confidence            8899999963 6799999999999999999986442211000000                                   


Q ss_pred             cceEEEeecCCccceee--eeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          190 MATKIANVGNSVHARCQ--KVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                   ..|+  +.-..+|...|.++.|-| |...+.++ .|.++++||.++.+ ....        ...++.
T Consensus        88 -------------~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ-~a~~--------F~me~~  145 (397)
T KOG4283|consen   88 -------------HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ-EAVD--------FKMEGK  145 (397)
T ss_pred             -------------eeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce-eeEE--------eecCce
Confidence                         0010  001258899999999998 55566777 99999999999443 3332        134567


Q ss_pred             eEEEEEeCCCC--cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-E-
Q 010933          266 ITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R-  341 (497)
Q Consensus       266 i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~-  341 (497)
                      |++-+++|-..  -++|+|..|-.|++.|+.+|...    +.+.             +|...|.++.|+|..+++++ | 
T Consensus       146 VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~Ls-------------GHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  146 VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HTLS-------------GHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             eehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----eeec-------------cccCceEEEEeccCceeEEEecC
Confidence            77778877531  47888888999999999998765    4444             47789999999999988765 4 


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccc--cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  419 (497)
                      .||.|++||++.-..++..+..|....+.+..  .-.+..   +.+++|+.|+.++++++.|.++++|+..+|+.-...+
T Consensus       209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk---vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~  285 (397)
T KOG4283|consen  209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK---VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF  285 (397)
T ss_pred             CCceEEEEEeecccceeEEeecccCccCccccccccccce---eeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence            46999999999755788888877753322211  111112   3689999999999999999999999999885432222


Q ss_pred             e--ccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceE
Q 010933          420 E--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF  493 (497)
Q Consensus       420 ~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~  493 (497)
                      -  .|.. -...++... ....   ..++--=.++. .+.  ..+..+..+..|-+.|.+.++.|+-+.+.++. +.+++
T Consensus       286 g~~~~n~-~~~~~~~~~-~~~s---~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~  360 (397)
T KOG4283|consen  286 GPIIHNQ-TTSFAVHIQ-SMDS---DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIY  360 (397)
T ss_pred             ccccccc-cccceEEEe-eccc---ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccc
Confidence            1  1111 011111100 0000   00111111122 333  33344455567778999999999988888888 66688


Q ss_pred             EEe
Q 010933          494 FHY  496 (497)
Q Consensus       494 i~~  496 (497)
                      .|.
T Consensus       361 ~w~  363 (397)
T KOG4283|consen  361 MWS  363 (397)
T ss_pred             ccc
Confidence            875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.3e-20  Score=172.57  Aligned_cols=290  Identities=8%  Similarity=0.066  Sum_probs=191.0

Q ss_pred             CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCC
Q 010933           44 GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG  123 (497)
Q Consensus        44 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~  123 (497)
                      ++.+++++.|+.|++||+.+++.                       +..+..+.             .+..++|  ++++
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~~-------------~~~~l~~--~~dg   42 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVGQ-------------RPRGITL--SKDG   42 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECCC-------------CCCceEE--CCCC
Confidence            35788999999999999987642                       44555443             3677999  6788


Q ss_pred             CEE-EEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933          124 SMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  202 (497)
Q Consensus       124 ~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (497)
                      +.+ ++++.++.|++||..+++....                                                      
T Consensus        43 ~~l~~~~~~~~~v~~~d~~~~~~~~~------------------------------------------------------   68 (300)
T TIGR03866        43 KLLYVCASDSDTIQVIDLATGEVIGT------------------------------------------------------   68 (300)
T ss_pred             CEEEEEECCCCeEEEEECCCCcEEEe------------------------------------------------------
Confidence            876 4567889999999987663321                                                      


Q ss_pred             ceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933          203 ARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  280 (497)
Q Consensus       203 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  280 (497)
                            + ..+. .+..++|+|+++.+++ + .++.+++||++ ..+.+..       +. +...+.+++|+|++ .+++
T Consensus        69 ------~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-~~~~~~~-------~~-~~~~~~~~~~~~dg-~~l~  130 (300)
T TIGR03866        69 ------L-PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIE-TRKVLAE-------IP-VGVEPEGMAVSPDG-KIVV  130 (300)
T ss_pred             ------c-cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECC-CCeEEeE-------ee-CCCCcceEEECCCC-CEEE
Confidence                  1 1221 2456889999997765 4 68999999998 4444433       21 22346789999999 8888


Q ss_pred             EEeCCC-eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e-cCeEEEEecCCCCce
Q 010933          281 YSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTP  357 (497)
Q Consensus       281 ~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~~~i~lwd~~~~~~~  357 (497)
                      +++.++ .+.+||.++++..    .....              ......++|+|+|++|+++ . ++.|++||+++ ++.
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~  191 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIV----DNVLV--------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKV  191 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEE----EEEEc--------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-cee
Confidence            888765 5778898876433    11111              1235779999999988654 3 59999999986 666


Q ss_pred             eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCC
Q 010933          358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  436 (497)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  436 (497)
                      +..+..+......       ... ....++|+|++++++. .+.++.+.+||+.+++.. ..+ .+...+.+++|+|  +
T Consensus       192 ~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~~--~  259 (300)
T TIGR03866       192 IKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFTP--D  259 (300)
T ss_pred             eeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEECC--C
Confidence            6665433211000       000 0136899999998654 455778999999877543 333 3445788999998  5


Q ss_pred             cccccccceeEe-eccCc-eecCCC-CCcccccccCCCeEEEEEec
Q 010933          437 ARRSSLSNLTRG-LYRQA-HENSSS-GHHELSYNLSSKLLHLAWHP  479 (497)
Q Consensus       437 ~~~~~~~~l~~~-~~d~~-~iw~~~-~~~~~~~~~~~~i~~l~~~p  479 (497)
                      +..     ++++ +.++. .+|... ...............++++|
T Consensus       260 g~~-----l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       260 EKY-----LLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             CCE-----EEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            555     6665 45677 999333 22222223445556777664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.9e-21  Score=162.64  Aligned_cols=279  Identities=16%  Similarity=0.223  Sum_probs=202.7

Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      ..++.|  ++.|.+|++|+.||.|.|||+.+....++                                           
T Consensus        26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~-------------------------------------------   60 (405)
T KOG1273|consen   26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM-------------------------------------------   60 (405)
T ss_pred             cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence            688999  78999999999999999999988663332                                           


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        +.+|..+|.+++|+++|+.|+++ .|..|.+||+.. +.+.+.+        ...++|+.+.
T Consensus        61 ------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~ri--------rf~spv~~~q  113 (405)
T KOG1273|consen   61 ------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRI--------RFDSPVWGAQ  113 (405)
T ss_pred             ------------------hhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEE--------EccCccceee
Confidence                              37999999999999999999999 999999999994 4455442        3568999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw  349 (497)
                      |+|...+.+++.-.+..-.+-++..+..     +.+....+  ...      .....+..|.+.|+++++|+. |.+.++
T Consensus       114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~d~d--~dl------n~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  114 WHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPKDDD--GDL------NSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             eccccCCeEEEEEecCCcEEEEecCCce-----eeccCCCc--ccc------ccccccccccCCCCEEEEecCcceEEEE
Confidence            9998756666655555566666654321     22222010  000      112334478999999999966 999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC----C--cc--eEEEe-
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----S--AG--GITVE-  420 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~----~--~~--~~~~~-  420 (497)
                      |..+ .+++..++.....              .|..+.++..|++|+.-+.|..|+.|+++.-    +  ++  .+.++ 
T Consensus       181 ~a~t-~e~vas~rits~~--------------~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD  245 (405)
T KOG1273|consen  181 DAET-LECVASFRITSVQ--------------AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD  245 (405)
T ss_pred             ecch-heeeeeeeechhe--------------eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence            9997 7888877755411              1258999999999999999999999998731    1  11  01111 


Q ss_pred             -ccCcceeeeEeecCCCcccccccceeEeeccCc--eec--CCCCCcccccccC-CCeEEEEEecCCCEEEEEeCCceEE
Q 010933          421 -AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLS-SKLLHLAWHPTTNLIACANGNSLFF  494 (497)
Q Consensus       421 -~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~--~iw--~~~~~~~~~~~~~-~~i~~l~~~p~~~~la~~~~~~~~i  494 (497)
                       ..+.+-++.+|+.  +|.+     ++.|+...-  +||  ..|.+...+-+.. ....++.|+|-...+++-..+.++|
T Consensus       246 vVNk~~Wk~ccfs~--dgeY-----v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~i  318 (405)
T KOG1273|consen  246 VVNKLQWKKCCFSG--DGEY-----VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYI  318 (405)
T ss_pred             HHhhhhhhheeecC--CccE-----EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEE
Confidence             1233456677877  6666     555553333  899  5666666666666 5677899999999999999999999


Q ss_pred             EeC
Q 010933          495 HYA  497 (497)
Q Consensus       495 ~~~  497 (497)
                      |++
T Consensus       319 w~~  321 (405)
T KOG1273|consen  319 WAV  321 (405)
T ss_pred             EEe
Confidence            973

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5e-22  Score=175.75  Aligned_cols=230  Identities=15%  Similarity=0.103  Sum_probs=178.0

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|.+++-  +|+|.+++.++..|.+++|.+.+|.+..+                                         
T Consensus        82 g~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------------------------------------  118 (476)
T KOG0646|consen   82 GPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNV-----------------------------------------  118 (476)
T ss_pred             cceeeeec--CCCceEEEeecccCcEEEEEeccccHHHH-----------------------------------------
Confidence            78999988  68888888888999999999999986653                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC-CccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~  267 (497)
                                          +.+|-..|+++.|+.||.+|++| .||.|.+|.+...-........+| ..+..|.-+|+
T Consensus       119 --------------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT  178 (476)
T KOG0646|consen  119 --------------------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT  178 (476)
T ss_pred             --------------------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE
Confidence                                26889999999999999999999 999999998752111111101111 34778999999


Q ss_pred             EEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          268 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       268 ~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      ++...+.| ...++++|.|.++++||+..+.++    ..+..              ...+.+++++|-++.+++|+ +|.
T Consensus       179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lti~f--------------p~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  179 DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LTITF--------------PSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             EEEecCCCccceEEEecCCceEEEEEeccceee----EEEec--------------CCcceeEEEcccccEEEecCCcce
Confidence            99988764 258999999999999999998765    22222              25799999999999999985 499


Q ss_pred             EEEEecCCCC---------------ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          346 LKLWDIRMDS---------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       346 i~lwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      |.+.++....               ..+..+.+|.+.             ..|++++++-||.+|++|+.||+++|||+.
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-------------~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-------------SAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCC-------------cceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            9888775311               123344455541             124799999999999999999999999999


Q ss_pred             CCCcceEEEeccCcceeeeEeecC
Q 010933          411 VGSAGGITVEAGKNENRKPILQAA  434 (497)
Q Consensus       411 ~~~~~~~~~~~~~~~v~~~~~~~~  434 (497)
                      +.+.+ +++....++|+.+.+.|-
T Consensus       308 S~Q~i-Rtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  308 SKQCI-RTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             hHHHH-HHHhhhccccceeEeecc
Confidence            87554 666667889999998653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=8.3e-22  Score=169.73  Aligned_cols=227  Identities=17%  Similarity=0.258  Sum_probs=164.8

Q ss_pred             cccCCcceEEEEEcCCC--CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           28 ELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      .+.|.+.|+.+.-++-|  .+.|+=+..|.|.||++...........+.       ......+++.++.+|.        
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~-------~~~s~~~Pl~t~~ghk--------  211 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLE-------VKDSEFRPLFTFNGHK--------  211 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccc-------ccccccCceEEecccC--------
Confidence            45678888888888865  455666788999999986432211111110       1123566778888888        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                          ..=+.|+|+|... ..|++|..-+.|++|...++..+.                                      
T Consensus       212 ----~EGy~LdWSp~~~-g~LlsGDc~~~I~lw~~~~g~W~v--------------------------------------  248 (440)
T KOG0302|consen  212 ----GEGYGLDWSPIKT-GRLLSGDCVKGIHLWEPSTGSWKV--------------------------------------  248 (440)
T ss_pred             ----ccceeeecccccc-cccccCccccceEeeeeccCceee--------------------------------------
Confidence                6689999976433 457888888899999998876332                                      


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                  +.       + -+.+|...|-.++|+|.. ..|++| .||+|+|||++...+...+.      .+.|.
T Consensus       249 ------------d~-------~-Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~kAh~  302 (440)
T KOG0302|consen  249 ------------DQ-------R-PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------TKAHN  302 (440)
T ss_pred             ------------cC-------c-cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------eeccC
Confidence                        10       0 026899999999999954 466777 99999999999554433332      47899


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC--EEEEE
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSR  341 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~  341 (497)
                      +.|..+.|+... .+||+|+.||.++|||+|+-+.-              .+...|.-|..+|+++.|+|...  +.++|
T Consensus       303 sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg  367 (440)
T KOG0302|consen  303 SDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWHPHEDSVIAASG  367 (440)
T ss_pred             CceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEeccccCceEEecc
Confidence            999999999998 69999999999999999975432              12223555789999999999543  34445


Q ss_pred             ecCeEEEEecCC
Q 010933          342 DYMNLKLWDIRM  353 (497)
Q Consensus       342 ~~~~i~lwd~~~  353 (497)
                      .|..|.+||+..
T Consensus       368 ~D~QitiWDlsv  379 (440)
T KOG0302|consen  368 EDNQITIWDLSV  379 (440)
T ss_pred             CCCcEEEEEeec
Confidence            779999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.4e-23  Score=194.78  Aligned_cols=235  Identities=17%  Similarity=0.298  Sum_probs=196.0

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|...|.|+..-..++.+++|+.|-.+-+|.....                       ..+..|.+|+           
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-----------------------~~i~S~~~he-----------   70 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-----------------------NAITSLTGHE-----------   70 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCC-----------------------chhheeeccC-----------
Confidence            458899999999778999999999999999998654                       3356689999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       .+|.++.|  +++..+|++|+.+|+|++||++..+..+                                         
T Consensus        71 -spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vr-----------------------------------------  106 (825)
T KOG0267|consen   71 -SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVR-----------------------------------------  106 (825)
T ss_pred             -Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhh-----------------------------------------
Confidence             99999999  6777899999999999999999776333                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                         + +.+|...+.++.|+|-+.+.+.| .|+.+++||++ ...+..+       +.+|...+.
T Consensus       107 -------------------t-Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~~vv~  158 (825)
T KOG0267|consen  107 -------------------T-LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHTRVVD  158 (825)
T ss_pred             -------------------h-hhccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCcceeE
Confidence                               2 27999999999999999999999 99999999999 4456655       677999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      .+.|+|+| .+++.+++|..+++||+..|++.    +.|+.             |.+.+..+.|+|..-+++.|+ |+.+
T Consensus       159 ~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~ef~~-------------~e~~v~sle~hp~e~Lla~Gs~d~tv  220 (825)
T KOG0267|consen  159 VLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KEFKS-------------HEGKVQSLEFHPLEVLLAPGSSDRTV  220 (825)
T ss_pred             EEeecCCC-ceeeccCCcceeeeecccccccc----ccccc-------------ccccccccccCchhhhhccCCCCcee
Confidence            99999999 99999999999999999998765    44444             568899999999888888874 6999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  403 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  403 (497)
                      ++||+++ ...+...+.....               +.+.+|+|+++.+++|..+..
T Consensus       221 ~f~dlet-fe~I~s~~~~~~~---------------v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  221 RFWDLET-FEVISSGKPETDG---------------VRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eeeccce-eEEeeccCCccCC---------------ceeeeecCCceeeecCchhhh
Confidence            9999986 5555555444333               368999999999988887543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.8e-20  Score=173.29  Aligned_cols=263  Identities=13%  Similarity=0.146  Sum_probs=175.2

Q ss_pred             CcceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ...+.+++|+|+|+.+ ++++.++.|++||..+++.                       ...+..+.             
T Consensus        30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~-------------   73 (300)
T TIGR03866        30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----------------------IGTLPSGP-------------   73 (300)
T ss_pred             CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEeccCCC-------------
Confidence            3456789999999976 5677889999999987643                       33333332             


Q ss_pred             ceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          111 KINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+..++|  +++++.++++ +.|+.+++||+.+++....                                         
T Consensus        74 ~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-----------------------------------------  110 (300)
T TIGR03866        74 DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAE-----------------------------------------  110 (300)
T ss_pred             CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeE-----------------------------------------
Confidence            2456788  6788877655 5689999999986543211                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                         +  .+...+.+++|+|+|+.++++ .+ ..+.+||.. ........      .  ....+.
T Consensus       111 -------------------~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~------~--~~~~~~  160 (300)
T TIGR03866       111 -------------------I--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV------L--VDQRPR  160 (300)
T ss_pred             -------------------e--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE------E--cCCCcc
Confidence                               1  112245679999999999988 55 457778987 34433321      1  123457


Q ss_pred             EEEEeCCCCcEEE-EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE--ecC
Q 010933          268 SAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYM  344 (497)
Q Consensus       268 ~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~  344 (497)
                      .++|+|++ ..|+ ++..++.|++||+++++..    +.+..+....      .........++|+|++++++++  .++
T Consensus       161 ~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~  229 (300)
T TIGR03866       161 FAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV------HPEAVQPVGIKLTKDGKTAFVALGPAN  229 (300)
T ss_pred             EEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc------ccccCCccceEECCCCCEEEEEcCCCC
Confidence            79999999 7665 4456999999999987644    2222100000      0001124568899999986554  347


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcceEEEeccC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      .+.+||+++ ++.+..+.... .+               .+++|+|+|++|+++ +.+|.|++||+.+++.+ ..++...
T Consensus       230 ~i~v~d~~~-~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~~~  291 (300)
T TIGR03866       230 RVAVVDAKT-YEVLDYLLVGQ-RV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-KSIKVGR  291 (300)
T ss_pred             eEEEEECCC-CcEEEEEEeCC-Cc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEEEccc
Confidence            899999986 66655543222 21               589999999999886 46899999999987544 5666543


Q ss_pred             cceeeeEeec
Q 010933          424 NENRKPILQA  433 (497)
Q Consensus       424 ~~v~~~~~~~  433 (497)
                       ..+.++++|
T Consensus       292 -~~~~~~~~~  300 (300)
T TIGR03866       292 -LPWGVVVRP  300 (300)
T ss_pred             -ccceeEeCC
Confidence             336776653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.8e-21  Score=162.20  Aligned_cols=224  Identities=15%  Similarity=0.161  Sum_probs=153.2

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +-|.++.|  +.-|+.+++|+.|++++|||.+...-..                                          
T Consensus        14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W------------------------------------------   49 (361)
T KOG2445|consen   14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTW------------------------------------------   49 (361)
T ss_pred             ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCce------------------------------------------
Confidence            77999999  7889999999999999999975433111                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-eeeEEeecCCCccCCCCCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~  265 (497)
                                    .+... .+.|.+.|..+.|.+  -|+.++++ .|+++.||.-.... +....-..+..++......
T Consensus        50 --------------~~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrss  114 (361)
T KOG2445|consen   50 --------------SCTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSS  114 (361)
T ss_pred             --------------EEeee-EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcc
Confidence                          12222 278999999999954  68899999 99999999763111 1100000111235667789


Q ss_pred             eEEEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC---CCEEEEE
Q 010933          266 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSR  341 (497)
Q Consensus       266 i~~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~~  341 (497)
                      |+.+.|.|.. .-.||+++.||.+|||+...--.+    +.+....+-..-......+..+..|+.|+|.   ..+||.|
T Consensus       115 V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg  190 (361)
T KOG2445|consen  115 VTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG  190 (361)
T ss_pred             eeEEEecchhcceEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence            9999999973 167999999999999998653222    1221111100000011234467889999974   3678888


Q ss_pred             ecC------eEEEEecCCCC-c--eeeeeeecccccccccccCCCCCccceeEEEEcCC----CCEEEEEeCCCcEEEEE
Q 010933          342 DYM------NLKLWDIRMDS-T--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYSNLLRIFS  408 (497)
Q Consensus       342 ~~~------~i~lwd~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~s~~~dg~i~vw~  408 (497)
                      .+.      .++||.....+ +  .+.++.+|..++               ++++|.|+    -..||+++.|| |+||+
T Consensus       191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~kDg-v~I~~  254 (361)
T KOG2445|consen  191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVATKDG-VRIFK  254 (361)
T ss_pred             cccCCccccceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEeecCc-EEEEE
Confidence            654      89999876544 2  344566676654               79999996    35799999999 99999


Q ss_pred             cCCC
Q 010933          409 HGVG  412 (497)
Q Consensus       409 ~~~~  412 (497)
                      +...
T Consensus       255 v~~~  258 (361)
T KOG2445|consen  255 VKVA  258 (361)
T ss_pred             Eeec
Confidence            9853

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=4.2e-21  Score=167.05  Aligned_cols=228  Identities=18%  Similarity=0.328  Sum_probs=160.5

Q ss_pred             CcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ..+|..+.|.++.. .||||+.|..|+||.+..+...              ...+..+++..|..|+            .
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~--------------~~~~~V~y~s~Ls~H~------------~   66 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG--------------GGDMKVEYLSSLSRHT------------R   66 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCC--------------CCceeEEEeecccCCc------------c
Confidence            36899999999776 9999999999999998765420              0013556788888999            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      +|+.++|  +|+|..|++|+.+|.|.+|....-...   ......                                 +.
T Consensus        67 aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~---------------------------------~~  108 (434)
T KOG1009|consen   67 AVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DADTEA---------------------------------DL  108 (434)
T ss_pred             eeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cccchh---------------------------------hh
Confidence            9999999  789999999999999999987641110   000000                                 00


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                      .-..|         .++....+|...|..++|+|++..++++ -|..+++||+. .++...+       +.+|...+..+
T Consensus       109 ~ke~w---------~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~yvqgv  171 (434)
T KOG1009|consen  109 NKEKW---------VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHYVQGV  171 (434)
T ss_pred             Cccce---------EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------cccccccccee
Confidence            00011         2222237899999999999999999999 99999999999 6777766       78999999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeccccccc--CCc-cccc--cccccccEEEEeeCCCEEEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESH--GSK-SFFT--EIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~~--~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      +|+|.+ .++++-+.|...+.+.+...+...... ..+.......  ... ..|.  ....-...++|+|+|.++++.
T Consensus       172 awDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP  248 (434)
T KOG1009|consen  172 AWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP  248 (434)
T ss_pred             ecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence            999999 999999999988888877654332111 0111100000  000 0010  112235678999999999873

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=5e-21  Score=160.97  Aligned_cols=246  Identities=18%  Similarity=0.200  Sum_probs=183.7

Q ss_pred             CCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        25 ~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      ....+.|..++.+++|.++ ..+++|+.||.|+.+|+.+++.                        ..+..|.       
T Consensus        47 l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~------------------------~~igth~-------   94 (323)
T KOG1036|consen   47 LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE------------------------DQIGTHD-------   94 (323)
T ss_pred             hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc------------------------eeeccCC-------
Confidence            3445679999999999985 4688999999999999998753                        4467788       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           .+|.+|.++  +....+++||.|++|++||.+.......                                    
T Consensus        95 -----~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~------------------------------------  131 (323)
T KOG1036|consen   95 -----EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT------------------------------------  131 (323)
T ss_pred             -----CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc------------------------------------
Confidence                 999999995  5666899999999999999986321110                                    


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                                ......|.++..+  |+.|+.| .+..+.+||++......+.      .-...+
T Consensus       132 --------------------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------reS~lk  177 (323)
T KOG1036|consen  132 --------------------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------RESSLK  177 (323)
T ss_pred             --------------------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh------ccccce
Confidence                                      1223377777765  5678887 9999999999965554432      122345


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  342 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~  342 (497)
                      -.++++++-|++ .=+++++.||+|.+=.+...+......-.|..|.......    ...-+|++|+|+|-...|++| +
T Consensus       178 yqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----~~~yPVNai~Fhp~~~tfaTgGs  252 (323)
T KOG1036|consen  178 YQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----EIIYPVNAIAFHPIHGTFATGGS  252 (323)
T ss_pred             eEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc----eEEEEeceeEeccccceEEecCC
Confidence            678999999977 6789999999999877766533333334555554332221    112479999999998889997 6


Q ss_pred             cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      ||.|.+||+.+ .+.+..+...+..+               -+++|+.||..||.++.
T Consensus       253 DG~V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  253 DGIVNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CceEEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence            79999999986 77777776664433               48999999999999885

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=4.2e-21  Score=171.06  Aligned_cols=262  Identities=14%  Similarity=0.129  Sum_probs=191.0

Q ss_pred             cceeEEEEEecCCCCEEEE--EeCCccEEEeecCch--heeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          110 EKINRVRWCAAPNGSMFIL--STNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s--~s~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                      ..+.++.|.  ... .|++  .+.|..+++|.-...  ++..+.+...            +. ..+........++..++
T Consensus        35 pg~~s~~w~--~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g------------d~-~~Cv~~~s~S~y~~sgG   98 (673)
T KOG4378|consen   35 PGDFSFNWQ--RRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG------------DN-AFCVACASQSLYEISGG   98 (673)
T ss_pred             Ccceeeecc--ccc-eEEEeecCCceeEEEecccCCCCccceeecccc------------ch-HHHHhhhhcceeeeccC
Confidence            569999994  332 2444  468999999976543  1111111111            11 11111122235555666


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC-CC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LT  263 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~  263 (497)
                      .  ++.+++||+...    .+..++++|...|+++.++-...+|+++ ..|.|.|..+.+ +.....       +.. ..
T Consensus        99 ~--~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~-------f~~~sg  164 (673)
T KOG4378|consen   99 Q--SGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTT-------FTIDSG  164 (673)
T ss_pred             c--CceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccc-------eecCCC
Confidence            5  789999999842    3344458999999999999999999999 899999999884 333322       332 24


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE--E
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--R  341 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~  341 (497)
                      ..++-+.|+|....+|.+++.+|.|.+||+......    ..+            ...|..+...++|+|..+.|++  |
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~------------~~~HsAP~~gicfspsne~l~vsVG  228 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHA------------SEAHSAPCRGICFSPSNEALLVSVG  228 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cch------------hhhccCCcCcceecCCccceEEEec
Confidence            566799999998678889999999999999875433    111            2357789999999998766555  4


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                      -|..|.+||.+. .+....+......                ..++|+++|.+|+.|...|.|..||++..+....++.+
T Consensus       229 ~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  229 YDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             ccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence            569999999985 6666666554433                58999999999999999999999999988788899999


Q ss_pred             cCcceeeeEeecC
Q 010933          422 GKNENRKPILQAA  434 (497)
Q Consensus       422 ~~~~v~~~~~~~~  434 (497)
                      |...|.+++|.+.
T Consensus       292 h~~sVt~vafq~s  304 (673)
T KOG4378|consen  292 HDASVTRVAFQPS  304 (673)
T ss_pred             cccceeEEEeeec
Confidence            9999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=5.3e-21  Score=161.96  Aligned_cols=282  Identities=16%  Similarity=0.229  Sum_probs=188.6

Q ss_pred             cCCcceEEEEEcC-----CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc--ccCccccc
Q 010933           30 QDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDY  102 (497)
Q Consensus        30 ~h~~~I~~i~~sp-----~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~  102 (497)
                      .|..+|..++|++     +-+.+|+.+. ..+.||+......                    ...+....  .|+     
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~--------------------ir~lq~y~D~d~~-----   89 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG--------------------IRLLQSYADEDHD-----   89 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc--------------------eeeeeeccCCCCC-----
Confidence            4788999999995     3356777765 4799998765321                    12222222  233     


Q ss_pred             ccccccccceeEEEEEecCC--CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc
Q 010933          103 LKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  180 (497)
Q Consensus       103 ~~~~~~~~~i~~l~~~~s~~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (497)
                             +..+.++|+...+  +.++++++.-|.|+|.|+.++++..                                 
T Consensus        90 -------Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---------------------------------  129 (385)
T KOG1034|consen   90 -------ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---------------------------------  129 (385)
T ss_pred             -------cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---------------------------------
Confidence                   7788899975332  5688888999999999998877433                                 


Q ss_pred             ccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc
Q 010933          181 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  258 (497)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  258 (497)
                                                 .+ .+|...|+.+.+.|+. ++++++ .|..|++|+++ ...++.++    ..
T Consensus       130 ---------------------------~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----GG  176 (385)
T KOG1034|consen  130 ---------------------------NY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----GG  176 (385)
T ss_pred             ---------------------------ce-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----cc
Confidence                                       22 7999999999999965 566778 99999999999 67777764    45


Q ss_pred             cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce-----------ecccccccCCcccccccccccc
Q 010933          259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-----------LRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      +++|.+.|.++.|+++| .+|++++.|..|++|++...+........           |.........+.+-+-|...|-
T Consensus       177 ~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             cccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence            78999999999999999 89999999999999999864432111111           1110011111223456888888


Q ss_pred             EEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeeccccccccccc-CCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          328 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       328 ~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      |+.|-  |.++++- .++.|..|....-.+.+...+..+.....+-.. +..-.+. -..++|.|-++.||.|...|.|+
T Consensus       256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW-firf~~d~~~~~la~gnq~g~v~  332 (385)
T KOG1034|consen  256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW-FIRFAFDPWQKMLALGNQSGKVY  332 (385)
T ss_pred             HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE-EEEEeecHHHHHHhhccCCCcEE
Confidence            88886  5788874 458999998721121111111111100000000 0000111 13567778899999999999999


Q ss_pred             EEEcCCCCc
Q 010933          406 IFSHGVGSA  414 (497)
Q Consensus       406 vw~~~~~~~  414 (497)
                      +||++..+.
T Consensus       333 vwdL~~~ep  341 (385)
T KOG1034|consen  333 VWDLDNNEP  341 (385)
T ss_pred             EEECCCCCC
Confidence            999998744

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=6.1e-21  Score=161.27  Aligned_cols=293  Identities=15%  Similarity=0.195  Sum_probs=210.1

Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      ...+.|  +|||..|++-+.|..+++|++.......-......                                     
T Consensus        52 ~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~-------------------------------------   92 (406)
T KOG2919|consen   52 LKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN-------------------------------------   92 (406)
T ss_pred             hcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCccc-------------------------------------
Confidence            456789  79999999999999999999864321110000000                                     


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeC-------CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNN-------SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                 .+....+.......|...+|-       |+..+++++ .+.-|++||.-+ ++....+     ..-.|.
T Consensus        93 -----------~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaft-G~lraSy-----~~ydh~  155 (406)
T KOG2919|consen   93 -----------FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFT-GKLRASY-----RAYDHQ  155 (406)
T ss_pred             -----------cccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccc-cccccch-----hhhhhH
Confidence                       000000001223345555553       677788888 999999999984 4333221     111232


Q ss_pred             ---CCeEEEEEeCCCCcEEEEEeCCCeEEEEEc-cCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEE
Q 010933          264 ---EVITSAEFHPIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL  338 (497)
Q Consensus       264 ---~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l  338 (497)
                         ....+++|+||| ..|++ +..+.|++||+ |.|+.+........+ .         .+..+-+.+++|+|-. +.+
T Consensus       156 de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~-k---------~gq~giisc~a~sP~~~~~~  223 (406)
T KOG2919|consen  156 DEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKG-K---------FGQKGIISCFAFSPMDSKTL  223 (406)
T ss_pred             HhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhhcc-c---------ccccceeeeeeccCCCCcce
Confidence               234789999999 77664 56778999999 777665322222221 0         1224678999999955 588


Q ss_pred             EEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcce
Q 010933          339 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGG  416 (497)
Q Consensus       339 ~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~  416 (497)
                      ++|+. ..+-||.-.. ..++..+-+|.+.+               +.+.|.++|+.|++|.. |-.|..||++......
T Consensus       224 a~gsY~q~~giy~~~~-~~pl~llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  224 AVGSYGQRVGIYNDDG-RRPLQLLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             eeecccceeeeEecCC-CCceeeecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            88887 7777777664 78899999999876               79999999999999987 7899999999887777


Q ss_pred             EEEeccCc-ceeeeEeecCCCcccccccceeEeeccCc-eecC---CCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933          417 ITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS---SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  491 (497)
Q Consensus       417 ~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~---~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~  491 (497)
                      ..|..|.. ....+.|-.+.++++     |++|+.||. ++|.   .+........++..++.++++|--+++|+++...
T Consensus       288 ~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  288 YALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             hhhhhhccCccceEEEecCCCCce-----eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            88999988 778888888878888     999999999 9993   3444556777889999999999999999988665


Q ss_pred             eE
Q 010933          492 LF  493 (497)
Q Consensus       492 ~~  493 (497)
                      +|
T Consensus       363 ~f  364 (406)
T KOG2919|consen  363 IF  364 (406)
T ss_pred             ee
Confidence            54

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.1e-21  Score=165.68  Aligned_cols=313  Identities=11%  Similarity=0.032  Sum_probs=214.8

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ...+|.+.|+++.||.+|++||+|+.|..+++|+++..-.   ++              ..+++. +.+|.         
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---~k--------------~~KPI~-~~~~~---------  103 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---RK--------------TPKPIG-VMEHP---------  103 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh---hc--------------CCCCce-eccCc---------
Confidence            4557999999999999999999999999999999864211   00              001122 22322         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                       |...|.+++|  +..+.++++|+.+++|.+.|+++.+.+.+...                                   
T Consensus       104 -H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-----------------------------------  145 (609)
T KOG4227|consen  104 -HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE-----------------------------------  145 (609)
T ss_pred             -cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc-----------------------------------
Confidence             1278999999  67788999999999999999998774432110                                   


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                              ....+.|+.+..+|..+.|++. .++.|.+||.+........+.     +......
T Consensus       146 ------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~~~~  196 (609)
T KOG4227|consen  146 ------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANSGKN  196 (609)
T ss_pred             ------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCCCcc
Confidence                                    2334589999999988888888 999999999984443333321     2334567


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~  344 (497)
                      .+.+-|+|..+.+|++.+..+-+.+||.+..+...   ....+       ...+.........+.|+|+|..+++-.- .
T Consensus       197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~---~~~~~-------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~  266 (609)
T KOG4227|consen  197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPV---YQRSM-------FKGLPQENTEWMGSLWSPSGNQFMSIRRGK  266 (609)
T ss_pred             ceeeeecCCCceeEEeccccCCCCceeeccccchH---Hhhhc-------cccCcccchhhhheeeCCCCCeehhhhccC
Confidence            78999999998999999999999999998754211   00000       0001111234578899999998887543 5


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------C-
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----------S-  413 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~----------~-  413 (497)
                      .-.+||+....-++..+......-.         .+..+.+++|..|.. +++|+.+-.|++|.+...          . 
T Consensus       267 ~P~~~D~~S~R~~V~k~D~N~~GY~---------N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~  336 (609)
T KOG4227|consen  267 CPLYFDFISQRCFVLKSDHNPNGYC---------NIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHD  336 (609)
T ss_pred             CCEEeeeecccceeEeccCCCCcce---------eeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcc
Confidence            5667888752233333332221111         111224788876654 999999999999997541          1 


Q ss_pred             -----------cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC
Q 010933          414 -----------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG  460 (497)
Q Consensus       414 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~  460 (497)
                                 .....|++|..-++.+.|++-  ..+     +++.+-... ++|....
T Consensus       337 ~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H--~~~-----l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  337 EEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH--NNL-----LVSSGVENSFKLWSDHR  388 (609)
T ss_pred             hhhCchhheecceeEEEecccccccceeecCC--cce-----Eeccchhhheecccccc
Confidence                       124578999999999999983  334     777777777 9995443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.6e-21  Score=163.23  Aligned_cols=288  Identities=19%  Similarity=0.226  Sum_probs=193.3

Q ss_pred             CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933           45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  124 (497)
Q Consensus        45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~  124 (497)
                      +.+|++...|.|+|||..+++.                       +..|++|.            ..++.++|.......
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~-----------------------l~~fk~~~------------~~~N~vrf~~~ds~h   85 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQL-----------------------LEEFKGPP------------ATTNGVRFISCDSPH   85 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhh-----------------------hheecCCC------------CcccceEEecCCCCC
Confidence            5689999999999999988744                       78889998            889999997422456


Q ss_pred             EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccce
Q 010933          125 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  204 (497)
Q Consensus       125 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (497)
                      .+.+|+.||+|++||++........                                                       
T Consensus        86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~-------------------------------------------------------  110 (376)
T KOG1188|consen   86 GVISCSSDGTVRLWDIRSQAESARI-------------------------------------------------------  110 (376)
T ss_pred             eeEEeccCCeEEEEEeecchhhhhe-------------------------------------------------------
Confidence            7889999999999999876533211                                                       


Q ss_pred             eeeeeccCCC-CCeeEEEeCCCCCEEEEE-----cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcE
Q 010933          205 CQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  278 (497)
Q Consensus       205 ~~~~~~~~h~-~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  278 (497)
                         . +.+++ .+..+++.+-.++.+++|     .+-.+.+||++...+.+..+      .+.|.+.|+++.|+|..+++
T Consensus       111 ---~-~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  111 ---S-WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             ---e-ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCCCCCe
Confidence               1 13443 456677777777888875     36789999999666645433      67899999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ecCeEEEEecCCCCc
Q 010933          279 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDST  356 (497)
Q Consensus       279 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~lwd~~~~~~  356 (497)
                      |++||.||.|.+||+.....-.....++..              ...|.++.|..++ +.|.+- .++...+|+++. +.
T Consensus       181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~-~~  245 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELED-GS  245 (376)
T ss_pred             EEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEccC-CC
Confidence            999999999999999875443333334333              4679999999887 335554 459999999986 55


Q ss_pred             eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcC---CCC--cceEEEec-cCcceeee
Q 010933          357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG---VGS--AGGITVEA-GKNENRKP  429 (497)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~---~~~--~~~~~~~~-~~~~v~~~  429 (497)
                      +...+....-.....-.....+.+   .......+....+.++. -|...++-+.   ++.  .....+.+ |..-|+.+
T Consensus       246 ~~~~~~~~~~~~~d~r~~~~~dY~---I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i  322 (376)
T KOG1188|consen  246 EETWLENPDVSADDLRKEDNCDYV---INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI  322 (376)
T ss_pred             hhhcccCccchhhhHHhhhhhhhe---eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence            544443221110000000000000   11111224445554444 5555555443   221  22356666 66677777


Q ss_pred             EeecCCCcccccccceeEeeccCc-eecC
Q 010933          430 ILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       430 ~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      .|-.  ..-     .+.+||+||. .+|.
T Consensus       323 ~~~~--~~~-----~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  323 LFDV--KND-----VLYTGGEDGLLQAWK  344 (376)
T ss_pred             hhhc--ccc-----eeeccCCCceEEEEe
Confidence            7764  333     3899999999 9994

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=2.3e-20  Score=172.07  Aligned_cols=273  Identities=14%  Similarity=0.179  Sum_probs=202.9

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      .|..++|-|||..|+.+.. ..+.|||...|.+                       +.++++|.            +.|+
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~l-----------------------lqtLKgHK------------DtVy   57 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTL-----------------------LQPLKGHK------------DTVY   57 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCccc-----------------------cccccccc------------ceEE
Confidence            8999999999998877654 4799999998854                       88999999            8999


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      +++|  +.||+.|++|+.|..|.+|...-.-..               ...+...+-.+.++|-...++++++   +..-
T Consensus        58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG~L---------------kYSH~D~IQCMsFNP~~h~LasCsL---sdFg  117 (1081)
T KOG1538|consen   58 CVAY--AKDGKRFASGSADKSVIIWTSKLEGIL---------------KYSHNDAIQCMSFNPITHQLASCSL---SDFG  117 (1081)
T ss_pred             EEEE--ccCCceeccCCCceeEEEeccccccee---------------eeccCCeeeEeecCchHHHhhhcch---hhcc
Confidence            9999  789999999999999999976432211               1223344555556666666666653   3345


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  272 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  272 (497)
                      +|..+..    .+..  ......+.+.+|+.||++++.| .+|+|.+-+-. +.....+     ....+..++|.+++|+
T Consensus       118 lWS~~qK----~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----~Rpgg~Nspiwsi~~~  185 (1081)
T KOG1538|consen  118 LWSPEQK----SVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----ERPGGSNSPIWSICWN  185 (1081)
T ss_pred             ccChhhh----hHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----eCCCCCCCCceEEEec
Confidence            6665532    1111  2335678899999999999999 99999998765 4443333     1245678999999999


Q ss_pred             CCC----CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933          273 PIY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  347 (497)
Q Consensus       273 ~~~----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~  347 (497)
                      |..    ...+++.....++.+|.+... .+.+. +.+.                -...|+.+.++|+|++.| +++.+.
T Consensus       186 p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~-r~L~----------------FdP~CisYf~NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  186 PSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKD-RALN----------------FDPCCISYFTNGEYILLGGSDKQLS  247 (1081)
T ss_pred             CCCCCCccceEEEEeccceeEEEEecce-eeccc-ccCC----------------CCchhheeccCCcEEEEccCCCceE
Confidence            874    146888888889999888642 22111 1111                235789999999999887 679999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      +|--+  +..+.+......++               +.++..|++++++.|+.||+|..|++
T Consensus       248 ~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  248 LFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhh
Confidence            99764  77777776666654               89999999999999999999999886

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.8e-22  Score=195.04  Aligned_cols=250  Identities=16%  Similarity=0.166  Sum_probs=187.5

Q ss_pred             ccceeEEEEEecCCC--CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          109 EEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~--~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      +.+-+.++|.+..++  ..|+.|..||.|.+||...-. ...                                      
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~-~~~--------------------------------------  104 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII-ANA--------------------------------------  104 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhc-cCc--------------------------------------
Confidence            377899999643322  257888899999999986521 000                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                     ..+.+.++ ..|.+.|..+.|++... +|++| .||.|.|||+.........      .-....+
T Consensus       105 ---------------~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~  162 (1049)
T KOG0307|consen  105 ---------------SEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPS  162 (1049)
T ss_pred             ---------------chHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcc
Confidence                           00122222 78999999999999555 88999 9999999999854433321      0123457


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE--
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--  341 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~--  341 (497)
                      .|.+++|+..-.+.|++++.+|++.|||+|..+.+.    .+..+.           ....+..+.|+|+.. .|+++  
T Consensus       163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii----~ls~~~-----------~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII----KLSDTP-----------GRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             cceEeccchhhhHHhhccCCCCCceeccccCCCccc----ccccCC-----------CccceeeeeeCCCCceeeeeecC
Confidence            899999998765789999999999999999876442    222211           013477899999873 34443  


Q ss_pred             ec--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933          342 DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT  418 (497)
Q Consensus       342 ~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~  418 (497)
                      +|  -.|.+||++....+++.+.+|...+               .++.|++.+ .+|++++.|++|.+|+.++++. ...
T Consensus       228 dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-l~~  291 (1049)
T KOG0307|consen  228 DDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-LGE  291 (1049)
T ss_pred             CCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCceE-eee
Confidence            34  6899999998788999999999865               799999965 8999999999999999999854 488


Q ss_pred             EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +....+.+..+.|.|...+.      ++..+.+|. .|+
T Consensus       292 ~p~~~nW~fdv~w~pr~P~~------~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  292 LPAQGNWCFDVQWCPRNPSV------MAAASFDGKISIY  324 (1049)
T ss_pred             cCCCCcceeeeeecCCCcch------hhhheeccceeee
Confidence            88888999999999964433      688999998 888

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=2.1e-21  Score=173.16  Aligned_cols=255  Identities=18%  Similarity=0.291  Sum_probs=198.4

Q ss_pred             cchhhhhcCCCCCCCcc---cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933           13 EWKCSQAFGERNPDEEL---QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY   89 (497)
Q Consensus        13 ~~~~~~~~~~~~~~~~~---~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (497)
                      .|.+++- +.+.+...+   ....-|.++.+.|||+.|++|++-.++.|||+.....                     +.
T Consensus       444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---------------------ri  501 (705)
T KOG0639|consen  444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---------------------RI  501 (705)
T ss_pred             EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc---------------------ch
Confidence            5887775 444444333   3467899999999999999999999999999987543                     33


Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      ..++....            ...++++.  +||.+..+++..||.|.|||+.+..+.+                      
T Consensus       502 kaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vr----------------------  545 (705)
T KOG0639|consen  502 KAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVR----------------------  545 (705)
T ss_pred             hhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeee----------------------
Confidence            33444433            44677888  7899999999999999999998765332                      


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  248 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  248 (497)
                                                            . +.+|++.+.|+.++++|..|-+| -|.+|+.||++...+.
T Consensus       546 --------------------------------------q-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  546 --------------------------------------Q-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             --------------------------------------c-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence                                                  2 38999999999999999999999 9999999999944443


Q ss_pred             eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      .+         ......|.++..+|++ .++++|-.++.+-|......+.       +           .+..|..-|.+
T Consensus       587 qq---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-------y-----------qlhlheScVLS  638 (705)
T KOG0639|consen  587 QQ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-------Y-----------QLHLHESCVLS  638 (705)
T ss_pred             hh---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-------e-----------eecccccEEEE
Confidence            32         1345789999999999 9999999999988877664321       1           12335678999


Q ss_pred             EEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933          329 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  407 (497)
Q Consensus       329 ~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw  407 (497)
                      +.|.+-|+++++. -|+-+..|...- +..+...+....                |+++.+|.|.++|+||+.|....||
T Consensus       639 lKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~Ss----------------VlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSS----------------VLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             EEecccCceeeecCchhhhhhccCcc-ccceeeccccCc----------------ceeeeeccCceEEEecCCCcceEEE
Confidence            9999999999985 569999999876 655555443332                2689999999999999999999998


Q ss_pred             Ec
Q 010933          408 SH  409 (497)
Q Consensus       408 ~~  409 (497)
                      .+
T Consensus       702 eV  703 (705)
T KOG0639|consen  702 EV  703 (705)
T ss_pred             EE
Confidence            76

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=5.3e-20  Score=153.40  Aligned_cols=208  Identities=16%  Similarity=0.219  Sum_probs=156.4

Q ss_pred             cCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccC-ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe
Q 010933          211 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  287 (497)
Q Consensus       211 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  287 (497)
                      ..+..++++..|+. +.++|.++ -|-+..|||++++ ...+++      .+-.|...|+.++|...+..+||+.+.||.
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGS  220 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGS  220 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCc
Confidence            45677999999987 67788888 9999999999953 111222      267899999999999987789999999999


Q ss_pred             EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEE-Eec-CeEEEEecCCCCceeeeeeec
Q 010933          288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS-RDY-MNLKLWDIRMDSTPVATFKIH  364 (497)
Q Consensus       288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~-~~i~lwd~~~~~~~~~~~~~~  364 (497)
                      +|+||+|..+..   .-+++. .          ....+...++|++.. +++|+ +.+ ..|.+.|++....++.++++|
T Consensus       221 vRmFDLR~leHS---TIIYE~-p----------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H  286 (364)
T KOG0290|consen  221 VRMFDLRSLEHS---TIIYED-P----------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH  286 (364)
T ss_pred             EEEEEecccccc---eEEecC-C----------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence            999999986532   122333 1          113578889998755 56666 345 899999999989999999999


Q ss_pred             ccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccccc
Q 010933          365 EHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  443 (497)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  443 (497)
                      ...+               ..++|.|. ...|+++|+|..+.+||+...-..     .-..|+                 
T Consensus       287 ~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPi-----------------  329 (364)
T KOG0290|consen  287 QASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPI-----------------  329 (364)
T ss_pred             cccc---------------cceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCch-----------------
Confidence            9976               68999995 578999999999999999865220     001111                 


Q ss_pred             ceeEeeccCceecCCCCCcccccccCCCeEEEEEecC-CCEEEEEeCCceEEE
Q 010933          444 NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNSLFFH  495 (497)
Q Consensus       444 ~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~-~~~la~~~~~~~~i~  495 (497)
                       |                   .......|+.++|+|. .+.+|++..+.+.|.
T Consensus       330 -l-------------------ay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  330 -L-------------------AYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             -h-------------------hhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence             1                   1113448899999975 688999988877654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.9e-21  Score=169.14  Aligned_cols=262  Identities=18%  Similarity=0.224  Sum_probs=179.4

Q ss_pred             EEEEEcC-------CCCEEEEeecCCeEEEEEecCCccc----cchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           36 SAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNH----ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        36 ~~i~~sp-------~g~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      .|++|..       .|+|+|.|+.|..|-|||+.-...-    .+....++. .     ....+.-..-.+|+       
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~-~-----~k~~k~~~~~~gHT-------  243 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKK-K-----KKKGKRSNSASGHT-------  243 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhh-h-----hhhcccccccccch-------
Confidence            5666643       3789999999999999998643210    011000000 0     00000011123577       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           ..|.+|.|.. .-...|++||.|.+|++||+.++++...                                    
T Consensus       244 -----davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s------------------------------------  281 (463)
T KOG0270|consen  244 -----DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS------------------------------------  281 (463)
T ss_pred             -----HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee------------------------------------
Confidence                 8899999952 3345788999999999999999885442                                    


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                              + ..|...|.++.|+| ....|++| .|++|.+.|.+.....-..        -..
T Consensus       282 ------------------------~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--------wk~  328 (463)
T KOG0270|consen  282 ------------------------I-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--------WKF  328 (463)
T ss_pred             ------------------------h-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------EEe
Confidence                                    2 67899999999988 56678888 9999999999843322221        124


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR  341 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~  341 (497)
                      .+.|-.++|.|.....+++++.||+++-+|+|....     .+|..           ..|.++|.++++++.-. +++++
T Consensus       329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~-----------~AHd~~ISgl~~n~~~p~~l~t~  392 (463)
T KOG0270|consen  329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTL-----------KAHDDEISGLSVNIQTPGLLSTA  392 (463)
T ss_pred             ccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEE-----------EeccCCcceEEecCCCCcceeec
Confidence            578899999999878889999999999999998642     23333           45788999999998655 45555


Q ss_pred             -ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcc
Q 010933          342 -DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       342 -~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                       +++.|++|++.. ..+ .....|......+            .++++.|+- -+|+.|+..+.++|||+.+...+
T Consensus       393 s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  393 STDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChhH
Confidence             569999999974 222 2222232222111            367777764 46778888889999999887555

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=7.1e-20  Score=168.18  Aligned_cols=268  Identities=15%  Similarity=0.142  Sum_probs=176.6

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933          211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  289 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  289 (497)
                      ..|...|..+.|.|....|+++ .|.++++||+. +..+...     ..+.+|...+.+++|.|..+..|++|+.||.|.
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il  170 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL  170 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEE
Confidence            6899999999999966677888 99999999999 4444332     126799999999999999988999999999999


Q ss_pred             EEEccCCcccc--c-ccceecccccccCCc-------cccccccccccE---EEEeeCCCEEEEE--ecCeEEEEecCCC
Q 010933          290 LVDMRQSALCD--H-SARILRDAAESHGSK-------SFFTEIIASISD---IKFANDGQHLLSR--DYMNLKLWDIRMD  354 (497)
Q Consensus       290 v~d~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~~~~~~~i~~---~~~s~~g~~l~~~--~~~~i~lwd~~~~  354 (497)
                      |||++-...-.  . .......|...+.+.       .....+...|.+   +.+..|...||++  .|+.|+|||++..
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            99998654110  0 012222223221111       122344445555   5566788888885  3799999999862


Q ss_pred             CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEeccCccee--eeEe
Q 010933          355 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENR--KPIL  431 (497)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~--~~~~  431 (497)
                       ......  ....+  .--.+....-.++.++.....|.+|++.+.|++|++|++.+-..- ...+.++...-.  .-..
T Consensus       251 -~~~~r~--ep~~~--~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l  325 (720)
T KOG0321|consen  251 -YTAYRQ--EPRGS--DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL  325 (720)
T ss_pred             -cccccc--CCCcc--cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeec
Confidence             211111  00000  000011112223367778778899998888999999999874322 223333332211  2223


Q ss_pred             ecCCCcccccccceeEeeccCc-eec---CCCCCcccccccCCCeEEEEEecC--CCEEEEEeCCceEEEe
Q 010933          432 QAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPT--TNLIACANGNSLFFHY  496 (497)
Q Consensus       432 ~~~~~~~~~~~~~l~~~~~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~--~~~la~~~~~~~~i~~  496 (497)
                      +|  ++.+     +++|+.|.. ++|   +.......+.+|...|+.++|.|.  .+.+.+..+..+.||.
T Consensus       326 Sp--d~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  326 SP--DDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             CC--CCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence            44  6777     999999999 999   444556678899999999999886  4555553356699996

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.9e-20  Score=174.38  Aligned_cols=272  Identities=13%  Similarity=0.190  Sum_probs=206.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+-+.|+|  .++|..+++++.||.|++|+.......                                           
T Consensus        14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~-------------------------------------------   48 (933)
T KOG1274|consen   14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEE-------------------------------------------   48 (933)
T ss_pred             CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccC-------------------------------------------
Confidence            77889999  789999999999999999987654210                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     +..  ...+...|.+++..  +..|++| .+++|.+|.+. ....-.+       +....-++++
T Consensus        49 ---------------P~t--i~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp-s~~~~~i-------L~Rftlp~r~  101 (933)
T KOG1274|consen   49 ---------------PET--IDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP-SGEEDTI-------LARFTLPIRD  101 (933)
T ss_pred             ---------------Cch--hhccCceeEEEeec--ccceEEeeccceEEEeeCC-CCCccce-------eeeeeccceE
Confidence                           000  02255667666654  4478888 99999999988 3333222       4456788999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+-+| +++|.|+.|-.|++-++......    +.+             .+|.++|.++.|+|++++||+.+ +|.|+
T Consensus       102 ~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~----~~l-------------rgh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen  102 LAVSGSG-KMIAAGSDDTAVKLLNLDDSSQE----KVL-------------RGHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             EEEecCC-cEEEeecCceeEEEEeccccchh----eee-------------cccCCceeeeeEcCCCCEEEEEecCceEE
Confidence            9999999 99999999999999998776433    344             44779999999999999999974 69999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe--ccCcc
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--AGKNE  425 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--~~~~~  425 (497)
                      +||++. +.+..++.+-....     ......+.  ..++|+|+|..++..+.|+.|++|+....+.. ..+.  -+...
T Consensus       164 iw~~~~-~~~~~tl~~v~k~n-----~~~~s~i~--~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-f~Lr~~~~ss~  234 (933)
T KOG1274|consen  164 IWDLQD-GILSKTLTGVDKDN-----EFILSRIC--TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-FKLRDKLSSSK  234 (933)
T ss_pred             EEEccc-chhhhhcccCCccc-----ccccccee--eeeeecCCCCeEEeeccCCeEEEEccCCceeh-eeecccccccc
Confidence            999986 77777665432210     00001221  68999999999999999999999999887554 4443  23344


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  489 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~  489 (497)
                      +..+.|+|  +|++     +|+++.+|. .||+...+..  ..+...|.+++|.|+.+.|-.-..
T Consensus       235 ~~~~~wsP--nG~Y-----iAAs~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  235 FSDLQWSP--NGKY-----IAASTLDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             eEEEEEcC--CCcE-----EeeeccCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEee
Confidence            88899999  7888     999999999 9996665333  567789999999999998766553

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=1.2e-19  Score=157.34  Aligned_cols=294  Identities=15%  Similarity=0.234  Sum_probs=196.7

Q ss_pred             hhhhhcCCCCCCCcccCCcceEEEEEcC-----CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933           15 KCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY   89 (497)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~I~~i~~sp-----~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (497)
                      ||..+||+...-+..-..=.|+-+.|..     +.++||.        +|+...|..+.+....+ .+-       -...
T Consensus        10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf~ViPl~k-~Gr-------~d~~   73 (472)
T KOG0303|consen   10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAFLVIPLVK-TGR-------MDAS   73 (472)
T ss_pred             hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcceeeccccc-ccc-------cCCC
Confidence            6788898766666655556777777765     3445543        44444443221111100 000       0122


Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      .-.+.||+            ++|..++|+| .+...+|+||.|.+|.||++..+.+....                    
T Consensus        74 ~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l--------------------  120 (472)
T KOG0303|consen   74 YPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL--------------------  120 (472)
T ss_pred             CCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc--------------------
Confidence            33467888            9999999987 45578999999999999999765533221                    


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCce
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~  247 (497)
                                                       .+++..+ .+|...|--++|+|.. +.|+++ .|..|.+||+.++..
T Consensus       121 ---------------------------------tepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea  166 (472)
T KOG0303|consen  121 ---------------------------------TEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA  166 (472)
T ss_pred             ---------------------------------ccceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCce
Confidence                                             1244444 8999999999999954 456666 999999999996665


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      .+.        +. |.+.|+++.|+.+| .+|++.+.|+.|||||.++++.+... ...++               ..-.
T Consensus       167 li~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-~~heG---------------~k~~  220 (472)
T KOG0303|consen  167 LIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG---------------AKPA  220 (472)
T ss_pred             eee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-ccccC---------------CCcc
Confidence            554        33 99999999999999 99999999999999999999765321 11112               2345


Q ss_pred             EEEEeeCCCEEEEE----ecCeEEEEecCCCCcee--eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-C
Q 010933          328 DIKFANDGQHLLSR----DYMNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-Y  400 (497)
Q Consensus       328 ~~~~s~~g~~l~~~----~~~~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~  400 (497)
                      .+.|-.+|.++.+|    ++..+-+||..+-.+++  .++....+.                .--=|.+|.+.|+.+| .
T Consensus       221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv----------------l~PFyD~dt~ivYl~GKG  284 (472)
T KOG0303|consen  221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV----------------LLPFYDPDTSIVYLCGKG  284 (472)
T ss_pred             eeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCce----------------EEeeecCCCCEEEEEecC
Confidence            66788889866666    34899999987644443  333333321                2234677877776544 5


Q ss_pred             CCcEEEEEcCCCCcceEEEe--ccCcceeeeEeec
Q 010933          401 SNLLRIFSHGVGSAGGITVE--AGKNENRKPILQA  433 (497)
Q Consensus       401 dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~~  433 (497)
                      |+.|+.|.+.+...-.+.+.  ....+-+.+.+-|
T Consensus       285 D~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP  319 (472)
T KOG0303|consen  285 DSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP  319 (472)
T ss_pred             CcceEEEEecCCCceeEEecccccCCccccccccc
Confidence            99999999987654334443  2334555566555

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.5e-19  Score=143.70  Aligned_cols=262  Identities=15%  Similarity=0.164  Sum_probs=180.2

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ..|.+-+++|.+++|++|..+|.|-+..+......             ....|.-..+-.+++|+            ++|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi   65 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI   65 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence            45667789999999999999999999998653210             00011123345568999            999


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      +.++|.    ..+|++++ ||.|+-|........                                          ...-
T Consensus        66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es------------------------------------------~~~K   98 (325)
T KOG0649|consen   66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEES------------------------------------------LATK   98 (325)
T ss_pred             eeeeee----hhheeecc-CceEEEeeehhhhhh------------------------------------------ccch
Confidence            999993    23555555 599999988654321                                          1122


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                      ++|.+..+.....      -.-..|+++...|..+.++.+ .|+.++-||++ .++....       +.+|++.|++++-
T Consensus        99 ~lwe~~~P~~~~~------~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   99 RLWEVKIPMQVDA------VEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVHSVVG  164 (325)
T ss_pred             hhhhhcCccccCc------ccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceeeeeee
Confidence            3454443321111      112368899999877777666 99999999999 5655554       8899999999998


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc-ccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWD  350 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~lwd  350 (497)
                      .... ..+++|++||++|+||+++++.+    +.++..    ...+.++.|. ..|.+++.  +..+|++|....+.+|.
T Consensus       165 R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~y----k~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwh  233 (325)
T KOG0649|consen  165 RNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPY----KNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWH  233 (325)
T ss_pred             cccC-cceeecCCCccEEEEecccccee----EEeccc----cChhhcCcccCceeEEEec--cCceEEecCCCceeEEe
Confidence            5555 68999999999999999998765    444331    1111222222 34555554  56799999889999999


Q ss_pred             cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      ++. .++...+......                ..+.|..  ..++++++.+.+.-|.+.
T Consensus       234 Lrs-se~t~vfpipa~v----------------~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  234 LRS-SESTCVFPIPARV----------------HLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ccC-CCceEEEecccce----------------eEeeeec--ceEEEeccccceeeeeec
Confidence            996 6666666543331                3577754  478889988899999876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=5.7e-20  Score=168.62  Aligned_cols=144  Identities=8%  Similarity=0.064  Sum_probs=109.0

Q ss_pred             CCCEEEE---EecCeEEEEecCCCCceee-eeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEE
Q 010933          334 DGQHLLS---RDYMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       334 ~g~~l~~---~~~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~  408 (497)
                      +.+.+|+   |+.|.|-||+++..+++-. .+.+-          .+...   ++++.|.| |...||++++||.|++|.
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------~Ngt~---vtDl~WdPFD~~rLAVa~ddg~i~lWr  656 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------FNGTL---VTDLHWDPFDDERLAVATDDGQINLWR  656 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------ccCce---eeecccCCCChHHeeecccCceEEEEE
Confidence            3455554   3459999999986555321 11111          11112   36999999 778999999999999999


Q ss_pred             cCCCCc------ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEec
Q 010933          409 HGVGSA------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHP  479 (497)
Q Consensus       409 ~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p  479 (497)
                      +..+..      ....+.+|...|..+.|.|- -.     -+|+++++|.. ++|  ........+.+|...|..++|||
T Consensus       657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPL-Aa-----dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp  730 (1012)
T KOG1445|consen  657 LTANGLPENEMTPEKILTIHGEKITSLRFHPL-AA-----DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP  730 (1012)
T ss_pred             eccCCCCcccCCcceeeecccceEEEEEecch-hh-----hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC
Confidence            977532      24678999999999999994 22     24899999999 999  44455667889999999999999


Q ss_pred             CCCEEEEEe-CCceEEEe
Q 010933          480 TTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       480 ~~~~la~~~-~~~~~i~~  496 (497)
                      +|+.+|+.+ ++.+++|+
T Consensus       731 dGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  731 DGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             CCcceeeeecCceEEEeC
Confidence            999999998 55588886

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.5e-20  Score=166.14  Aligned_cols=222  Identities=14%  Similarity=0.172  Sum_probs=176.5

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      .-.|++......|+++|+..+.|+|||+...                       .+.+.+++|+            ..|+
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-----------------------l~hr~lkdh~------------stvt  125 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK-----------------------LIHRFLKDHQ------------STVT  125 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHH-----------------------HHhhhccCCc------------ceeE
Confidence            4455555555689999999999999999743                       3467789999            8899


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      ++.|  +....+|++++..|.|.|..+.++......+                                           
T Consensus       126 ~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-------------------------------------------  160 (673)
T KOG4378|consen  126 YVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT-------------------------------------------  160 (673)
T ss_pred             EEEe--cCCcceeEEeccCCcEEEEecccCcccccee-------------------------------------------
Confidence            9999  6778899999999999999988766322110                                           


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                                       .+....|.-+.|+|..+.+++ + ++|.|.+||+. +...+.-      ....|..+...++|
T Consensus       161 -----------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~------~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  161 -----------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFH------ASEAHSAPCRGICF  216 (673)
T ss_pred             -----------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccc------hhhhccCCcCccee
Confidence                             122345667899998877765 5 99999999998 4433332      26789999999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEe
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD  350 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd  350 (497)
                      +|..+.+|++.+.|..|.+||.+..+..    ..+..              ..+...++|+++|.+|++|+. |.|..||
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             cCCccceEEEecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCceEEEEe
Confidence            9998789999999999999999976544    33322              357899999999999999965 9999999


Q ss_pred             cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC
Q 010933          351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  392 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  392 (497)
                      ++....++..+..|...|               ++++|-|..
T Consensus       279 ~R~~k~Pv~v~sah~~sV---------------t~vafq~s~  305 (673)
T KOG4378|consen  279 MRSTKAPVAVRSAHDASV---------------TRVAFQPSP  305 (673)
T ss_pred             cccCCCCceEeeecccce---------------eEEEeeecc
Confidence            998788999999999865               688887754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.6e-19  Score=172.44  Aligned_cols=311  Identities=12%  Similarity=0.140  Sum_probs=204.5

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      +-..+.|+|-...++++...-.|+|||.+.++.                       +..|..+...         ...|+
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-----------------------l~~F~n~~~~---------~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-----------------------LNGFDNGAFP---------DTRVS 1113 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCce-----------------------eccccCCCCC---------CCccc
Confidence            456788999888899988777999999988753                       4444443321         26799


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchh---eeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      ++.+....|..++++|+.||.|+||+-....   .+.+....   .+....... .+.-+-..+....-.+.+++-  -.
T Consensus      1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~---~Ls~~~~~~-r~~~~v~dWqQ~~G~Ll~tGd--~r 1187 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS---SLSDQLPGA-RGTGLVVDWQQQSGHLLVTGD--VR 1187 (1387)
T ss_pred             eeeeecccchhheeeeccCceEEEecccccccCCceeEEeec---cccccCccC-CCCCeeeehhhhCCeEEecCC--ee
Confidence            9999866677899999999999999754322   11110000   000000000 111122222222223333321  45


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC--e
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV--I  266 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--i  266 (497)
                      .|++||.+...   +..-...+....|++++-+ ..|+.+++| .||.|++||.+.......+     .....|++.  |
T Consensus      1188 ~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-----~~~R~h~~~~~I 1259 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQ---VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-----CVYREHNDVEPI 1259 (1387)
T ss_pred             EEEEEecccce---eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----eeecccCCcccc
Confidence            89999998542   3332224556677777664 357999999 9999999999854432111     125677777  9


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  346 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i  346 (497)
                      ..+.+.+.|-..|++|+.||.|++||+|... ......+-..           ....+..+++..++....+|+|+.+.|
T Consensus      1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-----------~~yGs~lTal~VH~hapiiAsGs~q~i 1327 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-----------WEYGSALTALTVHEHAPIIASGSAQLI 1327 (1387)
T ss_pred             eeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-----------cccCccceeeeeccCCCeeeecCcceE
Confidence            9999999884569999999999999999842 1111111110           001135899999999999999987999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      +||++.  ++.+..++.+....        ...+-.+.+++|+|-.-+||+|+.|..|.||.....
T Consensus      1328 kIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             EEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            999996  66666666444322        112223368999999999999999999999998765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3.7e-20  Score=167.87  Aligned_cols=272  Identities=14%  Similarity=0.161  Sum_probs=188.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|.+.|++++|.|....|++++.||.|++|+++...               ....-..+.+.+|++|+           
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~---------------~s~~~~~epi~tfraH~-----------  344 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK---------------KSAEKDVEPILTFRAHE-----------  344 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC---------------CccccceeeeEEEeccc-----------
Confidence            4589999999999999999999999999999995422               12223567789999999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ++|.|++.  .++++.+++|+.||+|+.|++.... .....                                      
T Consensus       345 -gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds--------------------------------------  382 (577)
T KOG0642|consen  345 -GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDS--------------------------------------  382 (577)
T ss_pred             -CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccccc--------------------------------------
Confidence             99999999  6889999999999999999886221 11000                                      


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                            +|.      ..+...+.||.+.|+.+++++....|+++ .||++++|+.. .... .++.     -..-.+...
T Consensus       383 ------~dp------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~-~~~~-~~f~-----~~~e~g~Pl  443 (577)
T KOG0642|consen  383 ------YDP------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT-EESP-CTFG-----EPKEHGYPL  443 (577)
T ss_pred             ------cCc------chhccceeccccceeeeeecccccceeeecCCceEEeeccC-CcCc-cccC-----CccccCCcc
Confidence                  000      01111137999999999999988899999 99999999987 3333 1110     111122234


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i  346 (497)
                      ++.+-...   ++-...+.....+++...+... ...+++. ...+...     -...++.+.++|.+.+.+++ .++.|
T Consensus       444 svd~~ss~---~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s-~~~~~~~-----~~~~in~vVs~~~~~~~~~~hed~~I  513 (577)
T KOG0642|consen  444 SVDRTSSR---PAHSLASFRFGYTSIDDMEVVS-DLLIFES-SASPGPR-----RYPQINKVVSHPTADITFTAHEDRSI  513 (577)
T ss_pred             eEeeccch---hHhhhhhcccccccchhhhhhh-heeeccc-cCCCccc-----ccCccceEEecCCCCeeEecccCCce
Confidence            55554332   2222223333444333322111 1133332 1111110     02457888999999888887 55999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      +++|..+ ++++.....|...+               +++++.|+|-+|++++.|+.+++|.+....
T Consensus       514 r~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  514 RFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccchh
Confidence            9999987 89999999888765               799999999999999999999999997653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.1e-19  Score=158.35  Aligned_cols=198  Identities=18%  Similarity=0.220  Sum_probs=151.2

Q ss_pred             cCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 010933          211 HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  288 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  288 (497)
                      .+|+..|.+++|+..- ..|++| .|.+|++||+. .+++..+       +..|...|.++.|+|..+..|++|+.|+++
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-~g~p~~s-------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V  311 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-TGKPKSS-------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTV  311 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcC-CCCccee-------hhhcCCceeEEEecCCCceEEEeccccceE
Confidence            5899999999998754 466777 99999999999 6666665       678999999999999988999999999999


Q ss_pred             EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933          289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      .+.|.|.....   .+.|..              .+.|-.++|.|.... +++++ ||.|+-+|++..++++.+++.|..
T Consensus       312 ~l~D~R~~~~s---~~~wk~--------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~  374 (463)
T KOG0270|consen  312 ALKDCRDPSNS---GKEWKF--------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD  374 (463)
T ss_pred             EeeeccCcccc---CceEEe--------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence            99999952211   144443              367999999997654 44554 499999999998899999999999


Q ss_pred             ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccC---cceeeeEeecCCCcccccc
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---NENRKPILQAAPRARRSSL  442 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~  442 (497)
                      .+               .++++++. ..+|++++.|+.+++|++......  ....|.   +...+.++.|. ...    
T Consensus       375 ~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~-~a~----  432 (463)
T KOG0270|consen  375 EI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPD-VAF----  432 (463)
T ss_pred             Cc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCC-cce----
Confidence            76               57888774 457889999999999998764332  111111   12334444443 222    


Q ss_pred             cceeEeeccCc-eec
Q 010933          443 SNLTRGLYRQA-HEN  456 (497)
Q Consensus       443 ~~l~~~~~d~~-~iw  456 (497)
                       .++.|+..+. ++|
T Consensus       433 -~la~GG~k~~~~vw  446 (463)
T KOG0270|consen  433 -TLAFGGEKAVLRVW  446 (463)
T ss_pred             -EEEecCccceEEEe
Confidence             4899998887 999

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=7.4e-20  Score=155.09  Aligned_cols=266  Identities=14%  Similarity=0.210  Sum_probs=182.7

Q ss_pred             cCCcceEEEEEcCC----CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        30 ~h~~~I~~i~~sp~----g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      .|.+....++|+-+    ..+||+|+.-|.|+|.|+.+++                       +...+.+|.        
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----------------------~~~~~~ghG--------  135 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----------------------CSKNYRGHG--------  135 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----------------------hccceeccC--------
Confidence            36677788888764    3588999999999999998764                       467789999        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                          ..|+.+.++| .+.++++++|.|..|++|++++..++.+...                                  
T Consensus       136 ----~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG----------------------------------  176 (385)
T KOG1034|consen  136 ----GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGG----------------------------------  176 (385)
T ss_pred             ----ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence                8899999986 4457999999999999999998886654311                                  


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEE------eecC---
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI------VDMK---  255 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~------~~~~---  255 (497)
                                              ..+|.+.|.++.|+++|..|+++ .|.++++|++.... ....      +..+   
T Consensus       177 ------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~-f~~~lE~s~~~~~~~t~  231 (385)
T KOG1034|consen  177 ------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE-FKNKLELSITYSPNKTT  231 (385)
T ss_pred             ------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH-HhhhhhhhcccCCCCcc
Confidence                                    27999999999999999999998 99999999998311 1000      0000   


Q ss_pred             ----------C--CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc-CCcccccccceecccccccCCccccccc
Q 010933          256 ----------P--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       256 ----------~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                                |  .+-..|...|-|+.|-  | .++++-+-++.|..|-.- -++.+.   .+... .........++-.
T Consensus       232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~---~vkp~-es~~Ti~~~~~~~  304 (385)
T KOG1034|consen  232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIH---NVKPP-ESATTILGEFDYP  304 (385)
T ss_pred             CcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhh---ccCCC-ccceeeeeEeccC
Confidence                      0  0223466666677665  4 678888889999999873 222110   00000 0000000111222


Q ss_pred             cccccEEE--EeeCCCEEEEEec-CeEEEEecCCCCcee-eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE
Q 010933          323 IASISDIK--FANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  398 (497)
Q Consensus       323 ~~~i~~~~--~s~~g~~l~~~~~-~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  398 (497)
                      ...|+-+.  |+|-++.||.|.. |.|.+||++....+. .++..+..             ...|+..+|+.|+..|+..
T Consensus       305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~-------------~~tVRQ~sfS~dgs~lv~v  371 (385)
T KOG1034|consen  305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS-------------GSTVRQTSFSRDGSILVLV  371 (385)
T ss_pred             ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc-------------cceeeeeeecccCcEEEEE
Confidence            23455554  4566889999866 999999998633322 22222221             1224789999999999999


Q ss_pred             eCCCcEEEEEcC
Q 010933          399 SYSNLLRIFSHG  410 (497)
Q Consensus       399 ~~dg~i~vw~~~  410 (497)
                      ++|+.|.-||.-
T Consensus       372 cdd~~Vwrwdrv  383 (385)
T KOG1034|consen  372 CDDGTVWRWDRV  383 (385)
T ss_pred             eCCCcEEEEEee
Confidence            999999999864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=151.43  Aligned_cols=301  Identities=15%  Similarity=0.147  Sum_probs=211.2

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      .+.+.+|.            +.|+++.|  +.++++|++|+.|..+++|.++.-...++                     
T Consensus        49 qKD~~~H~------------GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~---------------------   93 (609)
T KOG4227|consen   49 QKDVREHT------------GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT---------------------   93 (609)
T ss_pred             hhhhhhhc------------cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC---------------------
Confidence            55677888            88999999  67799999999999999999976443221                     


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  248 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  248 (497)
                                                       .+++...-..|.+.|.|++|...++.+.+| .+++|.+-|++ ..+.
T Consensus        94 ---------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~qs  139 (609)
T KOG4227|consen   94 ---------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQS  139 (609)
T ss_pred             ---------------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-ccee
Confidence                                             123332225677899999999999999999 99999999999 5555


Q ss_pred             eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      +.+.     .-....+.|+.+..+|.. +.|++.+.++.|.+||.+....-.   ..+-.           .........
T Consensus       140 i~V~-----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-----------AN~~~~F~t  199 (609)
T KOG4227|consen  140 IYVA-----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-----------ANSGKNFYT  199 (609)
T ss_pred             eeee-----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-----------cCCCcccee
Confidence            5431     111223489999999997 999999999999999999764211   11111           011245788


Q ss_pred             EEEeeCC-CEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          329 IKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       329 ~~~s~~g-~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                      +-|+|.. .+|++++. +-+-+||.+....++....+..+....         .....++.|+|+|..+++--....-.+
T Consensus       200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~---------~~~~M~~~~~~~G~Q~msiRR~~~P~~  270 (609)
T KOG4227|consen  200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE---------NTEWMGSLWSPSGNQFMSIRRGKCPLY  270 (609)
T ss_pred             eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc---------chhhhheeeCCCCCeehhhhccCCCEE
Confidence            8999976 45666655 889999998766666665554443210         001137899999999888777777778


Q ss_pred             EEcCCCCcceEEEec------cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC------C-------------
Q 010933          407 FSHGVGSAGGITVEA------GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS------G-------------  460 (497)
Q Consensus       407 w~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~------~-------------  460 (497)
                      ||+-+.......+..      ....+.+++|....   .     +++|+++=. +||...      +             
T Consensus       271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~-----v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~  342 (609)
T KOG4227|consen  271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---T-----VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS  342 (609)
T ss_pred             eeeecccceeEeccCCCCcceeeeeeeeeeeecce---e-----eeccCcccceEEEecCCCccccCccccCcchhhCch
Confidence            888764332222221      12356777776532   2     788888877 999211      1             


Q ss_pred             ------CcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          461 ------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       461 ------~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                            ....+.+|...++.+.|+|...+|++.+ .+.+++|+
T Consensus       343 ~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  343 EIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             hheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence                  0112457888999999999999888777 77899996

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.4e-19  Score=177.23  Aligned_cols=260  Identities=16%  Similarity=0.252  Sum_probs=193.7

Q ss_pred             CCCcccCCcceEEEEEcCCCCE----EEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccc
Q 010933           25 PDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  100 (497)
Q Consensus        25 ~~~~~~h~~~I~~i~~sp~g~~----lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  100 (497)
                      +...++-...-+.++|.+.|..    ||.|.+||.|.+||...-..                 ......+.++..|+   
T Consensus        57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~~~~~la~~~~h~---  116 (1049)
T KOG0307|consen   57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NASEEVLATKSKHT---  116 (1049)
T ss_pred             ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------CcchHHHhhhcccC---
Confidence            3344455678899999998766    88999999999999875211                 11346678888899   


Q ss_pred             ccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc
Q 010933          101 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  180 (497)
Q Consensus       101 ~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (497)
                               +.|..+.|.+ -.+..|++|+.||.|.|||+..-+.-...  .                            
T Consensus       117 ---------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~--~----------------------------  156 (1049)
T KOG0307|consen  117 ---------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTP--G----------------------------  156 (1049)
T ss_pred             ---------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCC--C----------------------------
Confidence                     9999999953 23448999999999999999873311100  0                            


Q ss_pred             ccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCc
Q 010933          181 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  258 (497)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  258 (497)
                                                   -..-.+.|.+++|+..-. .|+++ .+|.+.|||++..+..++.       
T Consensus       157 -----------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-------  200 (1049)
T KOG0307|consen  157 -----------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-------  200 (1049)
T ss_pred             -----------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-------
Confidence                                         023466899999998554 45667 8999999999955444442       


Q ss_pred             cCCCC--CCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933          259 MDDLT--EVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  333 (497)
Q Consensus       259 ~~~~~--~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  333 (497)
                       ..+.  ..+..++|+|+....+++++.|.   .|.+||+|.-..   ..+++             .+|...|.+|.|++
T Consensus       201 -s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~-------------~~H~~GilslsWc~  263 (1049)
T KOG0307|consen  201 -SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKIL-------------EGHQRGILSLSWCP  263 (1049)
T ss_pred             -ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhh-------------cccccceeeeccCC
Confidence             2222  34678999999877888888754   699999986432   12344             44678999999999


Q ss_pred             CC-CEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 010933          334 DG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG  410 (497)
Q Consensus       334 ~g-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~  410 (497)
                      .+ ++|+++ -|+.|.+|+.++ ++.+..+.....+.               ..+.|+|..- .+++++.||.|-||.+.
T Consensus       264 ~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  264 QDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             CCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheeccceeeeeee
Confidence            77 666665 579999999997 88898888766654               6899999654 88889999999999998


Q ss_pred             CCC
Q 010933          411 VGS  413 (497)
Q Consensus       411 ~~~  413 (497)
                      ...
T Consensus       328 ~~~  330 (1049)
T KOG0307|consen  328 GTD  330 (1049)
T ss_pred             cCC
Confidence            754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=2.3e-18  Score=143.55  Aligned_cols=273  Identities=14%  Similarity=0.148  Sum_probs=187.3

Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cC-------CeEEEEeCccCceeeEEeecCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DD-------LRINLWNLEISDQCFNIVDMKP  256 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d-------~~i~iwd~~~~~~~~~~~~~~~  256 (497)
                      +-.++.+.+-..+.....-.-+. +..|.+.|+.++-+|. .+.|+++ .+       ..+-||.+...........+..
T Consensus        36 lK~dNqVhll~~d~e~s~l~skv-f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~  114 (370)
T KOG1007|consen   36 LKEDNQVHLLRLDSEGSELLSKV-FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLEC  114 (370)
T ss_pred             cCCcceeEEEEecCccchhhhhh-hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhH
Confidence            33456677766665433222233 3688899999999994 5555654 31       3578998873322211000000


Q ss_pred             -CccC-CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-
Q 010933          257 -SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-  333 (497)
Q Consensus       257 -~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-  333 (497)
                       ..+. .+-+.|.++.|.|++ ..+++-. |..|.+|++..+..+...+..-..           .++....++-+|+| 
T Consensus       115 v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s-----------~e~~~~ftsg~WspH  181 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSES-----------AEMRHSFTSGAWSPH  181 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeeccccc-----------ccccceecccccCCC
Confidence             0122 344689999999998 7777654 889999999887643211111111           12445678889998 


Q ss_pred             -CCCEEEEEecCeEEEEecCCCCceeeee-eecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 010933          334 -DGQHLLSRDYMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG  410 (497)
Q Consensus       334 -~g~~l~~~~~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~  410 (497)
                       +|+.+++.++++++.||+++ .+....+ ..|...+               +++.|.|+.+ +|++|++||.|++||.+
T Consensus       182 Hdgnqv~tt~d~tl~~~D~RT-~~~~~sI~dAHgq~v---------------rdlDfNpnkq~~lvt~gDdgyvriWD~R  245 (370)
T KOG1007|consen  182 HDGNQVATTSDSTLQFWDLRT-MKKNNSIEDAHGQRV---------------RDLDFNPNKQHILVTCGDDGYVRIWDTR  245 (370)
T ss_pred             CccceEEEeCCCcEEEEEccc-hhhhcchhhhhccee---------------eeccCCCCceEEEEEcCCCccEEEEecc
Confidence             78999999999999999997 4444444 4555443               7899999876 57899999999999999


Q ss_pred             CCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec----CCC--------------------------
Q 010933          411 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN----SSS--------------------------  459 (497)
Q Consensus       411 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw----~~~--------------------------  459 (497)
                      ..+.....+.+|...++++.|.|. -.+.     +.+|+.|.. .+|    ...                          
T Consensus       246 ~tk~pv~el~~HsHWvW~VRfn~~-hdqL-----iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~  319 (370)
T KOG1007|consen  246 KTKFPVQELPGHSHWVWAVRFNPE-HDQL-----ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ  319 (370)
T ss_pred             CCCccccccCCCceEEEEEEecCc-cceE-----EEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence            887888999999999999999996 4455     788888888 777    110                          


Q ss_pred             -CCcccccccCCCeEEEEEecCCCEE-EEEeCCceEE
Q 010933          460 -GHHELSYNLSSKLLHLAWHPTTNLI-ACANGNSLFF  494 (497)
Q Consensus       460 -~~~~~~~~~~~~i~~l~~~p~~~~l-a~~~~~~~~i  494 (497)
                       +.+.....|+..|.+++|+...+.+ |+-+.||-.|
T Consensus       320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             ccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence             0112344788999999999988874 6666776444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=1.2e-19  Score=171.42  Aligned_cols=260  Identities=17%  Similarity=0.211  Sum_probs=192.5

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .++|-.+|+|+.|...|.++++|+.|..++||..+++                       .++..++||+          
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-----------------------~~lAs~rGhs----------  232 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-----------------------RCLASCRGHS----------  232 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccch-----------------------hhhccCCCCc----------
Confidence            4578999999999999999999999999999998876                       4589999999          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        +.|+.++.  +.++.+++++|.|..|++|.+..+..+.+                                       
T Consensus       233 --~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv---------------------------------------  269 (1113)
T KOG0644|consen  233 --GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV---------------------------------------  269 (1113)
T ss_pred             --cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH---------------------------------------
Confidence              88999999  56778899999999999999998774433                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                            +.+|++.|++++|+|-.   .++.||++++||.+-....  . ...|..+. ....+.
T Consensus       270 ----------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~--y-~prp~~~~-~~~~~~  320 (1113)
T KOG0644|consen  270 ----------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRI--Y-VPRPLKFT-EKDLVD  320 (1113)
T ss_pred             ----------------------HhccccceeeeccCccc---cCCCCCceEeccccccccc--c-CCCCCCcc-ccccee
Confidence                                  27999999999999965   3349999999998821111  1 11111121 235667


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ecCe
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMN  345 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~  345 (497)
                      ++.|..++ .-+++++.|+.-..|.+..-..        ..               ..+.-+.++.+- .+.+++ .+-.
T Consensus       321 s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~--------~~---------------~~lif~t~ssd~~~~~~~ar~~~~  376 (1113)
T KOG0644|consen  321 SILFENNG-DRFLTGSRDGEARNHEFEQLAW--------RS---------------NLLIFVTRSSDLSSIVVTARNDHR  376 (1113)
T ss_pred             eeeccccc-cccccccCCcccccchhhHhhh--------hc---------------cceEEEeccccccccceeeeeeeE
Confidence            77888888 8899999999988887754211        10               111222222222 345555 5588


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      +++|++.+ +.+...+.+|...+               .-+.++|-+ +...+++.||.+.|||+-.+..+.....+|. 
T Consensus       377 ~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-  439 (1113)
T KOG0644|consen  377 LCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-  439 (1113)
T ss_pred             eeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-
Confidence            99999986 88888888888764               468999954 4556999999999999999877766665543 


Q ss_pred             ceeeeEeec
Q 010933          425 ENRKPILQA  433 (497)
Q Consensus       425 ~v~~~~~~~  433 (497)
                      .+..-+|++
T Consensus       440 kl~d~kFSq  448 (1113)
T KOG0644|consen  440 KLVDGKFSQ  448 (1113)
T ss_pred             eeeccccCC
Confidence            333445665

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.5e-17  Score=157.41  Aligned_cols=314  Identities=15%  Similarity=0.239  Sum_probs=212.0

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|+-.++|.++||+++++|+|..||+|.+|.--..+.                   +-...+.+.-|.           
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~-----------  251 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH-----------  251 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc-----------
Confidence            45778899999999999999999999999997443110                   112345577787           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  +++|.+|++|+..+.+-+|.+.+++.+-                                         
T Consensus       252 -~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqf-----------------------------------------  287 (792)
T KOG1963|consen  252 -DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQF-----------------------------------------  287 (792)
T ss_pred             -cccceeEE--ecCCceEeecccceEEEEEeecCCCccc-----------------------------------------
Confidence             77999999  6899999999999999999999877221                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC---CccCCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP---SNMDDLTE  264 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~  264 (497)
                                           +..-.++|..+.++||+...+.. .|..|.+...........+-.+++   .+-....+
T Consensus       288 ---------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  288 ---------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             ---------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence                                 24557789999999999999888 999999998752222222111111   11122356


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--  342 (497)
                      -.+.++++|.- +.++..+..|.|.+||+.+...+.+. ++...+.. .+.    ..+...+++++.+-.|.++++..  
T Consensus       347 l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~-~v~~~n~~-~~~----~n~~v~itav~~~~~gs~maT~E~~  419 (792)
T KOG1963|consen  347 LTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKL-QVCDENYS-DGD----VNIQVGITAVARSRFGSWMATLEAR  419 (792)
T ss_pred             cceeEEEcCCC-CceeecCCCceEEEEeccccceeeeE-EEEeeccc-CCc----ceeEEeeeeehhhccceEEEEeeee
Confidence            67888999965 78889999999999999886654221 11111000 000    13345788888888899999853  


Q ss_pred             -------c--CeEEEEecCCCCc---eeeeee-ecccccccccccCCCCCccceeEEE-EcCCCC-EEEEEeCCCcEEEE
Q 010933          343 -------Y--MNLKLWDIRMDST---PVATFK-IHEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGSYSNLLRIF  407 (497)
Q Consensus       343 -------~--~~i~lwd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~-~l~s~~~dg~i~vw  407 (497)
                             +  -.+++|-.....+   +...+. .|....               ...+ .++... ..++++.||.++||
T Consensus       420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~---------------vat~~~~~~rs~~~vta~~dg~~KiW  484 (792)
T KOG1963|consen  420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF---------------VATIFLNPTRSVRCVTASVDGDFKIW  484 (792)
T ss_pred             ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee---------------EEEEEecCcccceeEEeccCCeEEEE
Confidence                   1  3678897753221   222222 233221               1233 333333 88999999999999


Q ss_pred             EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEE
Q 010933          408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA  487 (497)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~  487 (497)
                      -+...+..    ..+...-.+.+++.                                 -|..++++++|+.||..||++
T Consensus       485 ~~~~~~n~----~k~~s~W~c~~i~s---------------------------------y~k~~i~a~~fs~dGslla~s  527 (792)
T KOG1963|consen  485 VFTDDSNI----YKKSSNWTCKAIGS---------------------------------YHKTPITALCFSQDGSLLAVS  527 (792)
T ss_pred             EEeccccc----CcCccceEEeeeec---------------------------------cccCcccchhhcCCCcEEEEe
Confidence            99765332    11111111111111                                 145688999999999999999


Q ss_pred             eCCceEEEe
Q 010933          488 NGNSLFFHY  496 (497)
Q Consensus       488 ~~~~~~i~~  496 (497)
                      .++.+.+|.
T Consensus       528 ~~~~Itiwd  536 (792)
T KOG1963|consen  528 FDDTITIWD  536 (792)
T ss_pred             cCCEEEEec
Confidence            999999996

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=3.6e-18  Score=142.43  Aligned_cols=260  Identities=18%  Similarity=0.223  Sum_probs=178.5

Q ss_pred             cCCcceEEEEEcCC-CCEEEEeecC-------CeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc-ccCccc
Q 010933           30 QDVDIVSAIEFDKT-GDYLAVGDRG-------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEF  100 (497)
Q Consensus        30 ~h~~~I~~i~~sp~-g~~lasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~  100 (497)
                      .|.+.|..++-+|. .+.|+|+..+       ..+-||.+.....              +......+++..+. .+-   
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~--------------~S~~~tlE~v~~Ldteav---  123 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG--------------QSNSSTLECVASLDTEAV---  123 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC--------------ccccchhhHhhcCCHHHh---
Confidence            36789999999994 5566666542       2578998865432              01111223333343 233   


Q ss_pred             ccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc
Q 010933          101 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  180 (497)
Q Consensus       101 ~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (497)
                               +.|.++.|.  |++..+++.. |..|.+|++..+..+. .......                         
T Consensus       124 ---------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~v-aev~ss~-------------------------  165 (370)
T KOG1007|consen  124 ---------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIV-AEVLSSE-------------------------  165 (370)
T ss_pred             ---------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchh-eeecccc-------------------------
Confidence                     789999995  5777887776 7889999998765321 1000000                         


Q ss_pred             ccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEEcCCeEEEEeCccCceeeEEeecCCCc
Q 010933          181 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSN  258 (497)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  258 (497)
                                                   -.+|....++-+|+|  +|+.+++..|+++..||+++..+...+       
T Consensus       166 -----------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI-------  209 (370)
T KOG1007|consen  166 -----------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI-------  209 (370)
T ss_pred             -----------------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch-------
Confidence                                         024566778889988  888888889999999999966655554       


Q ss_pred             cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CE
Q 010933          259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QH  337 (497)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~  337 (497)
                      -..|...+..+.|+|+-..+|++|+.||.|++||.|..+...   .             .+.+|...+.++.|+|.- ++
T Consensus       210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv---~-------------el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV---Q-------------ELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc---c-------------ccCCCceEEEEEEecCccceE
Confidence            567889999999999976789999999999999999754321   2             235678999999999964 45


Q ss_pred             EEEE-ecCeEEEEecCCCCc----------------------------eeeeeeecccccccccccCCCCCccceeEEEE
Q 010933          338 LLSR-DYMNLKLWDIRMDST----------------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  388 (497)
Q Consensus       338 l~~~-~~~~i~lwd~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (497)
                      +++| +|..|.+|....-..                            .+.++..|+.            ++   ++++|
T Consensus       274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED------------SV---Y~~aW  338 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED------------SV---YALAW  338 (370)
T ss_pred             EEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc------------ce---EEEee
Confidence            5565 679999997643110                            1222333333            33   69999


Q ss_pred             cCCC-CEEEEEeCCCcEEEEEcCC
Q 010933          389 SGDG-LHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       389 s~~~-~~l~s~~~dg~i~vw~~~~  411 (497)
                      |.-. -.+|+-+.||++.|=++..
T Consensus       339 SsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  339 SSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccCCCeeEEEeccCceEEeecCCh
Confidence            9744 4667899999998876653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=2.3e-18  Score=152.41  Aligned_cols=245  Identities=16%  Similarity=0.184  Sum_probs=180.3

Q ss_pred             cCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe
Q 010933          211 HAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  287 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  287 (497)
                      .-+..+|++++|+|..  +++++| ..|.|-+||+...++....+    ..+..|..+|.++.|+|.....+++.|.||+
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence            5678899999999954  466778 89999999995222211100    0167899999999999998789999999999


Q ss_pred             EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccc
Q 010933          288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      |++-|++....-    .++..           +.....+..+.|+.+...++.+++ |...+||+++++.....+..|..
T Consensus       259 iR~~D~~~~i~e----~v~s~-----------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k  323 (498)
T KOG4328|consen  259 IRLQDFEGNISE----EVLSL-----------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK  323 (498)
T ss_pred             eeeeeecchhhH----HHhhc-----------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence            999999875322    11111           001245778888888888888876 99999999998887888888887


Q ss_pred             ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcce---EEEeccCcceeeeEeecCCCcccccc
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSL  442 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~  442 (497)
                      .+               ++++++|- ..+|||+|.|++.+|||++......   ...-.|...|++..|+|. .      
T Consensus       324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-~------  381 (498)
T KOG4328|consen  324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-G------  381 (498)
T ss_pred             cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-C------
Confidence            54               69999995 4689999999999999998754332   455689999999999995 2      


Q ss_pred             cceeEeeccCc-eecCCC-----CCcccccccCC------CeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          443 SNLTRGLYRQA-HENSSS-----GHHELSYNLSS------KLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       443 ~~l~~~~~d~~-~iw~~~-----~~~~~~~~~~~------~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      +.|++.+.|.. +||...     ......+.|+.      ......|.|+..++++|. .+.|-||+
T Consensus       382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            23788888888 999332     12222223322      223568999999999988 44566665

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=2.3e-18  Score=157.23  Aligned_cols=252  Identities=13%  Similarity=0.163  Sum_probs=174.3

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      .+...++||+            +.|.+|..  .+.|.+|++|+.||+|+||.+.++.++...                  
T Consensus       391 ~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~------------------  438 (733)
T KOG0650|consen  391 RCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTV------------------  438 (733)
T ss_pred             eeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEE------------------
Confidence            3445678999            99999999  678999999999999999999998865432                  


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC--EEEEEcCCeEEEEeCccC
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEIS  245 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~  245 (497)
                                                                  .-.+.|.|++|+|.+.  .|+++.+.++.|-+..-+
T Consensus       439 --------------------------------------------~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  439 --------------------------------------------QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG  474 (733)
T ss_pred             --------------------------------------------eecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence                                                        2233566666766443  233332222333332211


Q ss_pred             ce--------eeEEe------------ecCC---------CccCCCCCCeEEEEEeCCCCcEEEEEeCC---CeEEEEEc
Q 010933          246 DQ--------CFNIV------------DMKP---------SNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDM  293 (497)
Q Consensus       246 ~~--------~~~~~------------~~~~---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~  293 (497)
                      .+        .+...            ..+.         ...-.|...|..+.|+..| .+|++...+   ..|.|+++
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEec
Confidence            00        00000            0000         0122477889999999999 999988664   57888888


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  373 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  373 (497)
                      ...+..    ..|             ..-.+.+.++.|+|...+|++++...|++||+.. ...++.+......+     
T Consensus       554 SK~~sQ----~PF-------------~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi-----  610 (733)
T KOG0650|consen  554 SKRKSQ----SPF-------------RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI-----  610 (733)
T ss_pred             cccccc----Cch-------------hhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee-----
Confidence            765422    222             1224679999999999999999999999999985 66666665444433     


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933          374 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  453 (497)
Q Consensus       374 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~  453 (497)
                                ..++.+|.|..|+.|+.|+++..||++-+....+.++.|...++.+++.+.       .++||+|+.||.
T Consensus       611 ----------S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgt  673 (733)
T KOG0650|consen  611 ----------SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGT  673 (733)
T ss_pred             ----------eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCc
Confidence                      589999999999999999999999998776666777777777777777663       344677766666


Q ss_pred             -eec
Q 010933          454 -HEN  456 (497)
Q Consensus       454 -~iw  456 (497)
                       .++
T Consensus       674 v~Vf  677 (733)
T KOG0650|consen  674 VIVF  677 (733)
T ss_pred             EEEE
Confidence             554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=6.8e-16  Score=150.22  Aligned_cols=323  Identities=21%  Similarity=0.344  Sum_probs=223.7

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|...|.++.|.+.+..++.++.|+.+.+|+...+.                      .....+.++..          
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~----------  109 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE----------------------KLIKSLEGLHD----------  109 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc----------------------eeEEEEeccCC----------
Confidence            4688999999999999999999999999999987753                      12344444330          


Q ss_pred             ccceeEEEEEecCCCC-EEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          109 EEKINRVRWCAAPNGS-MFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~-~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                       ..+..+.+. .+++. .++..+ .|+.+.+|+... ...                                        
T Consensus       110 -~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----------------------------------------  147 (466)
T COG2319         110 -SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKL----------------------------------------  147 (466)
T ss_pred             -CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeE----------------------------------------
Confidence             257777775 56666 455544 499999999986 221                                        


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                          ... +..|...|..++|+|+++.++++ . |+.+++|+.. .......       +.+|.
T Consensus       148 --------------------~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~  198 (466)
T COG2319         148 --------------------IRT-LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLST-------LAGHT  198 (466)
T ss_pred             --------------------EEE-EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEe-------eccCC
Confidence                                111 26888999999999999988887 5 9999999998 3444443       56699


Q ss_pred             CCeEEEEEeCCCCc-EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          264 EVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       264 ~~i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      ..+.+++|+|++ . .+++++.|+.|++||.+.+.....   .+..             |.... ...|+|++.+++++ 
T Consensus       199 ~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~~~~-------------~~~~~-~~~~~~~~~~~~~~~  260 (466)
T COG2319         199 DPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---TLSG-------------HSDSV-VSSFSPDGSLLASGS  260 (466)
T ss_pred             CceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---ecCC-------------CCcce-eEeECCCCCEEEEec
Confidence            999999999998 6 555558999999998885543310   2322             33333 23899999888766 


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE--
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV--  419 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~--  419 (497)
                      .++.+++|++......+..+..|...+               .++.|.|++..+++++.|+.+.+|+..+.... ...  
T Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~  324 (466)
T COG2319         261 SDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGKLL-SSLTL  324 (466)
T ss_pred             CCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCceE-EEeee
Confidence            459999999986444244444554432               57899999899988999999999988877544 333  


Q ss_pred             eccCcceeeeEeecCCCcccccccceeEe-eccCc-eecCCCCCcc-cccccCCCeEEEEEecCCCEEEE-Ee-CCceEE
Q 010933          420 EAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIAC-AN-GNSLFF  494 (497)
Q Consensus       420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-~~d~~-~iw~~~~~~~-~~~~~~~~i~~l~~~p~~~~la~-~~-~~~~~i  494 (497)
                      ..|...+..+.+ .. ++..     ++.+ ..++. .+|....... ........+..+.+++ ...+.. +. +..+.+
T Consensus       325 ~~~~~~~~~~~~-~~-~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  396 (466)
T COG2319         325 KGHEGPVSSLSF-SP-DGSL-----LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRL  396 (466)
T ss_pred             cccCCceEEEEE-CC-CCCE-----EEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEE
Confidence            478888888888 52 3222     3444 56655 6683333221 1222222288999999 633333 23 556777


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |.
T Consensus       397 ~~  398 (466)
T COG2319         397 WD  398 (466)
T ss_pred             Ee
Confidence            75

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=9.1e-18  Score=151.42  Aligned_cols=271  Identities=15%  Similarity=0.232  Sum_probs=188.8

Q ss_pred             CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933           45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  124 (497)
Q Consensus        45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~  124 (497)
                      ..++.++.||.+.|.+-..                        +......+|.            ++|.+-+|  ++||.
T Consensus        76 d~~~i~s~DGkf~il~k~~------------------------rVE~sv~AH~------------~A~~~gRW--~~dGt  117 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA------------------------RVERSISAHA------------AAISSGRW--SPDGA  117 (737)
T ss_pred             ceEEEEcCCceEEEecccc------------------------hhhhhhhhhh------------hhhhhccc--CCCCc
Confidence            4678888999999987543                        3456678898            99999999  78999


Q ss_pred             EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccce
Q 010933          125 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  204 (497)
Q Consensus       125 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (497)
                      -|+++++||.|++|.-.+.- ...                                                        
T Consensus       118 gLlt~GEDG~iKiWSrsGML-RSt--------------------------------------------------------  140 (737)
T KOG1524|consen  118 GLLTAGEDGVIKIWSRSGML-RST--------------------------------------------------------  140 (737)
T ss_pred             eeeeecCCceEEEEeccchH-HHH--------------------------------------------------------
Confidence            99999999999999854322 111                                                        


Q ss_pred             eeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933          205 CQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  284 (497)
Q Consensus       205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  284 (497)
                           +.....+|+|++|.|+.+.++.+..+.+.|=-+....+.++        +..|.+-|.++.|++.. +++++|++
T Consensus       141 -----l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~~W~~~s-~lI~sgGE  206 (737)
T KOG1524|consen  141 -----VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSLSWSTQS-NIIASGGE  206 (737)
T ss_pred             -----HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEeecCccc-cceeecCC
Confidence                 12345689999999999999998667777766553344443        78999999999999998 99999999


Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeec
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH  364 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~  364 (497)
                      |-..++||.....+       |..           ..|.-+|++++|+|+ +.++.++.+.+|+=..+.           
T Consensus       207 D~kfKvWD~~G~~L-------f~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~-----------  256 (737)
T KOG1524|consen  207 DFRFKIWDAQGANL-------FTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV-----------  256 (737)
T ss_pred             ceeEEeecccCccc-------ccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCCc-----------
Confidence            99999999865422       222           345678999999999 788888877777322211           


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccc
Q 010933          365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN  444 (497)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  444 (497)
                       +            ++   ..++||+||..+++|+..|.+.+=-+-..+.....++....+-..+....           
T Consensus       257 -G------------Si---fnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrd-----------  309 (737)
T KOG1524|consen  257 -G------------SI---FNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRD-----------  309 (737)
T ss_pred             -c------------ce---EEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeeh-----------
Confidence             1            22   48999999999999999998766443332222222221111111111110           


Q ss_pred             eeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          445 LTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       445 l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      +++             .......+...|...+  -...+|++++...+|+|+
T Consensus       310 V~~-------------~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys  346 (737)
T KOG1524|consen  310 VAT-------------GVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS  346 (737)
T ss_pred             hhh-------------hHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence            000             1223445555665544  456778999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=7.6e-18  Score=151.91  Aligned_cols=206  Identities=15%  Similarity=0.195  Sum_probs=157.3

Q ss_pred             CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933          227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  305 (497)
Q Consensus       227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  305 (497)
                      ..|+.+ .||.+.+.+-.  ++.-.       ....|.+.+.+-.|+|+| .-|+++++||.|++|.- +|-+.    .+
T Consensus        76 d~~~i~s~DGkf~il~k~--~rVE~-------sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLR----St  140 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS--ARVER-------SISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLR----ST  140 (737)
T ss_pred             ceEEEEcCCceEEEeccc--chhhh-------hhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHH----HH
Confidence            355555 99999988754  22222       267899999999999999 89999999999999984 33221    11


Q ss_pred             ecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeE
Q 010933          306 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  385 (497)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (497)
                      +.             ....+|.|++|.|+.+-++.+..+.+.|=.+.. ...+..++.|.+.+               .+
T Consensus       141 l~-------------Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~  191 (737)
T KOG1524|consen  141 VV-------------QNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LS  191 (737)
T ss_pred             Hh-------------hcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EE
Confidence            11             112579999999999888877778888888876 66677789999875               79


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccc
Q 010933          386 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS  465 (497)
Q Consensus       386 ~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~  465 (497)
                      +.|++.+..+++||+|-+.+|||-. | .....-..|..+|++++|.|+.   .     ++.|+..-.+         ..
T Consensus       192 ~~W~~~s~lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd~---~-----~~v~S~nt~R---------~~  252 (737)
T KOG1524|consen  192 LSWSTQSNIIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPEK---D-----YLLWSYNTAR---------FS  252 (737)
T ss_pred             eecCccccceeecCCceeEEeeccc-C-cccccCChhccceeeeeecccc---c-----eeeeeeeeee---------ec
Confidence            9999999999999999999999965 3 3447888999999999999952   2     4555433221         11


Q ss_pred             cccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933          466 YNLSSKLLHLAWHPTTNLIACANGNSLFFH  495 (497)
Q Consensus       466 ~~~~~~i~~l~~~p~~~~la~~~~~~~~i~  495 (497)
                      ....+.|..++|||||..+++|+..+..|+
T Consensus       253 ~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  253 SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            223458999999999999999998776554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=1.2e-17  Score=154.37  Aligned_cols=263  Identities=13%  Similarity=0.136  Sum_probs=194.4

Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|+.++|  .|||..|+.+..+ .+.+||+..|.+...                                          
T Consensus        14 ci~d~af--kPDGsqL~lAAg~-rlliyD~ndG~llqt------------------------------------------   48 (1081)
T KOG1538|consen   14 CINDIAF--KPDGTQLILAAGS-RLLVYDTSDGTLLQP------------------------------------------   48 (1081)
T ss_pred             chheeEE--CCCCceEEEecCC-EEEEEeCCCcccccc------------------------------------------
Confidence            4999999  7899988887765 588999988874432                                          


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                         +++|.+.|++++|+.+|+.+++| .|..|.+|+..-.+ .++         -.|.+.|.|+
T Consensus        49 -------------------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~Lk---------YSH~D~IQCM   99 (1081)
T KOG1538|consen   49 -------------------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILK---------YSHNDAIQCM   99 (1081)
T ss_pred             -------------------cccccceEEEEEEccCCceeccCCCceeEEEecccccc-eee---------eccCCeeeEe
Confidence                               28999999999999999999999 99999999977333 333         2599999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~l  348 (497)
                      .|+|-. +.|++++-. ..-+|........    +.-.               ...+.+++|..||++++.| .+|+|.+
T Consensus       100 sFNP~~-h~LasCsLs-dFglWS~~qK~V~----K~ks---------------s~R~~~CsWtnDGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen  100 SFNPIT-HQLASCSLS-DFGLWSPEQKSVS----KHKS---------------SSRIICCSWTNDGQYLALGMFNGTISI  158 (1081)
T ss_pred             ecCchH-HHhhhcchh-hccccChhhhhHH----hhhh---------------heeEEEeeecCCCcEEEEeccCceEEe
Confidence            999998 889988765 3568887664332    1111               2568999999999999999 5699999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-----LHFATGSYSNLLRIFSHGVGSAGGITVEAGK  423 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  423 (497)
                      -+..  +++...+....+..         +.   |++++|+|..     ..+++.....++.+|.+... .+.. -+.-.
T Consensus       159 RNk~--gEek~~I~Rpgg~N---------sp---iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk-~r~L~  222 (1081)
T KOG1538|consen  159 RNKN--GEEKVKIERPGGSN---------SP---IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGK-DRALN  222 (1081)
T ss_pred             ecCC--CCcceEEeCCCCCC---------CC---ceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecc-cccCC
Confidence            8764  44444444322211         12   2799999963     47888999999999988643 2211 11111


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  491 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~  491 (497)
                      -...++..-+  +|.+     +..|+.|+. +++ ..+-...+.-++...|..++.+|++..+++|+.|+
T Consensus       223 FdP~CisYf~--NGEy-----~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  223 FDPCCISYFT--NGEY-----ILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             CCchhheecc--CCcE-----EEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence            1112444444  7777     888999998 999 55556677778899999999999999999999655

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=1.8e-17  Score=136.62  Aligned_cols=296  Identities=13%  Similarity=0.140  Sum_probs=190.9

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~  108 (497)
                      .|.+.|+|+.|-.++. |.+|...|.|.+|++++.+.                       ...+++ |.           
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~-----------------------~~~~r~~g~-----------   56 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD-----------------------LPLIRLFGR-----------   56 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCcc-----------------------chhhhhhcc-----------
Confidence            4889999999998875 88999999999999998643                       444553 44           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCC-ccccccccccccCcccc-CCCCCcc---cccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-FVSSENTLLAEKNFMNE-HNPPSFA---HGYH  183 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~  183 (497)
                       ..|+.+.-.  | +..+.+-+.|..+.+|++..+....+.....+. ..|.++........-.. .......   ..-.
T Consensus        57 -~~it~lq~~--p-~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   57 -LFITNLQSI--P-NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             -ceeeceeec--C-CcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence             668888874  3 367899999999999999876544332211111 11111111111100000 0000000   0000


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCC--EEEEE-cCCeEEEEeCccCceeeEEeecCC--C
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP--S  257 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~  257 (497)
                      ++.  .-.+++-+-.           ..+..+.+.+..+.. .+.  ++++| ++|.+.+||+..+.+.++.-..-+  .
T Consensus       133 ~g~--~tqv~i~dd~-----------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~  199 (323)
T KOG0322|consen  133 GGD--TTQVQIADDS-----------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES  199 (323)
T ss_pred             cCc--cceeEccCch-----------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence            000  0011111111           124455676666532 333  44568 999999999995433322110000  1


Q ss_pred             ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC--cccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933          258 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  335 (497)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  335 (497)
                      ....|..++.++.+.+.- ..=++++.+..+..|.+...  .+.......++.               ..+..+.+-||+
T Consensus       200 ~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn---------------pGv~gvrIRpD~  263 (323)
T KOG0322|consen  200 PNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN---------------PGVSGVRIRPDG  263 (323)
T ss_pred             chhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecC---------------CCccceEEccCC
Confidence            245689999999999865 56678888889999988643  221111122222               568999999999


Q ss_pred             CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          336 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       336 ~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      +.+|+++ |++||+|+.++ ..++..++.|...+               .+++|+|+...+|+++.|++|.+|++
T Consensus       264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence            9999975 69999999997 89999999999765               69999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=1.4e-17  Score=145.39  Aligned_cols=281  Identities=18%  Similarity=0.165  Sum_probs=181.0

Q ss_pred             cceeEEEEEecCCCC-EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      .+|.++.|.  ++.. .+++|+.|..|++|.+..+....                                         
T Consensus        14 ~pv~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~-----------------------------------------   50 (434)
T KOG1009|consen   14 EPVYSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGG-----------------------------------------   50 (434)
T ss_pred             CceEEEEec--cCcccceecccCccceeeeeeeecCCCC-----------------------------------------
Confidence            679999995  4444 89999999999999987655211                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC------------ceeeEEeecC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------------DQCFNIVDMK  255 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~------------~~~~~~~~~~  255 (497)
                       +...         .+.+.. +..|...|+.+.|+|+|+.|++| ++|.|.+|-....            ++...+    
T Consensus        51 -~~~~---------V~y~s~-Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v----  115 (434)
T KOG1009|consen   51 -GDMK---------VEYLSS-LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV----  115 (434)
T ss_pred             -Ccee---------EEEeec-ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEE----
Confidence             0000         011222 37999999999999999999999 9999999976510            000110    


Q ss_pred             CCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933          256 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  335 (497)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  335 (497)
                      ...+.+|...|+.++|+|++ .++++++.|..+++||+..|...    ..+.             +|...+..++|.|-+
T Consensus       116 ~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~~~-------------dh~~yvqgvawDpl~  177 (434)
T KOG1009|consen  116 KKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AILD-------------DHEHYVQGVAWDPLN  177 (434)
T ss_pred             EEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----eecc-------------ccccccceeecchhh
Confidence            02367899999999999999 99999999999999999998765    3433             466889999999999


Q ss_pred             CEEEEE-ecCeEEEEecCCCCceeeeee-----e---cccccccccccCCCCCc-cceeEEEEcCCCCEEEEEeC----C
Q 010933          336 QHLLSR-DYMNLKLWDIRMDSTPVATFK-----I---HEHLRPKLCDLYNNDSI-FDKFECSVSGDGLHFATGSY----S  401 (497)
Q Consensus       336 ~~l~~~-~~~~i~lwd~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~s~~~----d  401 (497)
                      +++++- .|...+.+++.. .+.+....     .   +... ...-.++.++.. ...+.++|+|||.+|++...    +
T Consensus       178 qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e-~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g  255 (434)
T KOG1009|consen  178 QYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNERE-GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG  255 (434)
T ss_pred             hhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCC-cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence            999984 456566666653 22222111     0   0000 000012222221 11267999999999986653    2


Q ss_pred             C-----cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEE
Q 010933          402 N-----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLA  476 (497)
Q Consensus       402 g-----~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~  476 (497)
                      +     ..++|+-..-......+..-..+...+.++|-                           ..++......= -+-
T Consensus       256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV---------------------------y~elrp~~~~~-~~~  307 (434)
T KOG1009|consen  256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV---------------------------YYELRPLSSEK-FLF  307 (434)
T ss_pred             CceeeceeEeeccccccCceeecCCCCcceEEEEeeee---------------------------EEEeccccccc-ccc
Confidence            2     23556555444444555555666666666652                           01111111100 023


Q ss_pred             EecCCCEEEEEeCCceEEEe
Q 010933          477 WHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       477 ~~p~~~~la~~~~~~~~i~~  496 (497)
                      --|.+-.+|+++.+.+|||.
T Consensus       308 ~lpyrlvfaiAt~~svyvyd  327 (434)
T KOG1009|consen  308 VLPYRLVFAIATKNSVYVYD  327 (434)
T ss_pred             ccccceEEEEeecceEEEec
Confidence            35677888999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1.6e-17  Score=144.45  Aligned_cols=212  Identities=13%  Similarity=0.138  Sum_probs=157.5

Q ss_pred             ccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .+|+++|..++|+| +.+.||+|++|.+|.||++-.+-+                ..+-.+++..|.||.          
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l----------------~~~ltepvv~L~gH~----------  131 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL----------------TRDLTEPVVELYGHQ----------  131 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCccc----------------ccCcccceEEEeecc----------
Confidence            37999999999999 667899999999999999865432                122346688899999          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        .+|--++|+|.. ...|++++.|.+|.+|++.+++....                                       
T Consensus       132 --rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~---------------------------------------  169 (472)
T KOG0303|consen  132 --RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALIT---------------------------------------  169 (472)
T ss_pred             --eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeee---------------------------------------
Confidence              899999998733 45899999999999999998873321                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC-CC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EV  265 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~  265 (497)
                                             -.|...|++++|+.+|.+|++. .|+.|++||.+ .+..+..       ..+|. ..
T Consensus       170 -----------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~~heG~k  218 (472)
T KOG0303|consen  170 -----------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GVAHEGAK  218 (472)
T ss_pred             -----------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------cccccCCC
Confidence                                   2499999999999999999998 99999999999 4555443       23454 33


Q ss_pred             eEEEEEeCCCCcEEEEEe---CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-E
Q 010933          266 ITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R  341 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~  341 (497)
                      -..+.|-.+| .++.+|-   .+..+-+||...-+.... ...+..              .+.|.---|.+|.+.+.. |
T Consensus       219 ~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~-~~elDt--------------SnGvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  219 PARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIA-LQELDT--------------SNGVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             cceeEEeccC-ceeeeccccccccceeccCcccccCcce-eEEecc--------------CCceEEeeecCCCCEEEEEe
Confidence            4566788888 6554443   378899999876433210 011221              245666667888877765 4


Q ss_pred             -ecCeEEEEecCCCC
Q 010933          342 -DYMNLKLWDIRMDS  355 (497)
Q Consensus       342 -~~~~i~lwd~~~~~  355 (497)
                       +|+.||-|.+..+.
T Consensus       283 KGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  283 KGDSSIRYFEITNEP  297 (472)
T ss_pred             cCCcceEEEEecCCC
Confidence             57999999998643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=1.1e-15  Score=132.24  Aligned_cols=240  Identities=15%  Similarity=0.224  Sum_probs=167.4

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...++.+.|+.+...|..|+.|| .++|+.+...+                           -.|...        -...
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---------------------------~~~~~~--------~~~~   48 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---------------------------CFSKDT--------EGVS   48 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------hhcccC--------CCeE
Confidence            35677888999999999999998 68888765321                           111100        0023


Q ss_pred             eeEEEEEecCCCCEEEEEeCC--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          112 INRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      |--+-|  +  ..+++..+.+  +.+++.++..+..+                                           
T Consensus        49 IvEmLF--S--SSLvaiV~~~qpr~Lkv~~~Kk~~~I-------------------------------------------   81 (391)
T KOG2110|consen   49 IVEMLF--S--SSLVAIVSIKQPRKLKVVHFKKKTTI-------------------------------------------   81 (391)
T ss_pred             EEEeec--c--cceeEEEecCCCceEEEEEcccCceE-------------------------------------------
Confidence            444455  3  3477777654  34777776654422                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                     |...|    ...|.++.++.+  .|+.+-...|+|||++ .-+.+++++    +.+.+...+.++
T Consensus        82 ---------------Ce~~f----pt~IL~VrmNr~--RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~gl~Al  135 (391)
T KOG2110|consen   82 ---------------CEIFF----PTSILAVRMNRK--RLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKGLCAL  135 (391)
T ss_pred             ---------------EEEec----CCceEEEEEccc--eEEEEEcccEEEEecc-cceeehhhh----ccCCCccceEee
Confidence                           22222    457888888754  6777733339999999 555555542    233455667777


Q ss_pred             EEeCCCCcEEEEEeC--CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--Ce
Q 010933          270 EFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN  345 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~  345 (497)
                      ++++.+ .++|.-+.  .|.|.+||+.+-+..    ..+             ..|++.+.+++|+++|.+||++++  -.
T Consensus       136 S~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v----~~I-------------~aH~~~lAalafs~~G~llATASeKGTV  197 (391)
T KOG2110|consen  136 SPNNAN-CYLAYPGSTTSGDVVLFDTINLQPV----NTI-------------NAHKGPLAALAFSPDGTLLATASEKGTV  197 (391)
T ss_pred             ccCCCC-ceEEecCCCCCceEEEEEcccceee----eEE-------------EecCCceeEEEECCCCCEEEEeccCceE
Confidence            777776 67776543  689999999875433    333             457899999999999999999987  46


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      |||+.+.. ++.+.+++.....+          .   |.+++|+|++++|++.|..++|+||.++..
T Consensus       198 IRVf~v~~-G~kl~eFRRG~~~~----------~---IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  198 IRVFSVPE-GQKLYEFRRGTYPV----------S---IYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEEEcCC-ccEeeeeeCCceee----------E---EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            79999986 88888887554433          2   369999999999999999999999999865

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=1.2e-16  Score=152.63  Aligned_cols=282  Identities=15%  Similarity=0.189  Sum_probs=170.5

Q ss_pred             ccchhhhhcCCCCCCCcccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccc
Q 010933           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYK   90 (497)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (497)
                      +.|.+..-   ..+.-.+.-...|+|+.|+| +..+||.|+.+|.|.+||+..+...                 +....-
T Consensus       225 ~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ls  284 (555)
T KOG1587|consen  225 LVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSGLS  284 (555)
T ss_pred             EEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcccc
Confidence            34655442   22323334468999999999 6678899999999999999876430                 000111


Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      .....|.            .+++.+.|..++.+.-|++++.||.|..|+++.-.. ..........  ..-.........
T Consensus       285 ~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~--~~~~~~~~~~~~  350 (555)
T KOG1587|consen  285 ALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK--HKGQQSSKAVGA  350 (555)
T ss_pred             cccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc--ccccccccccce
Confidence            1123455            999999998766667799999999999998764321 1000000000  000000000001


Q ss_pred             cccCCCCCc-ccccccccccCcceEEEeecCCcc-c----eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 010933          170 MNEHNPPSF-AHGYHLEWTENMATKIANVGNSVH-A----RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  242 (497)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~  242 (497)
                      ....+.+.. ..+..|.  ..|.|.--....... .    +.+..+ ..|.+.|.++.++|-+..++.. .|.+++||..
T Consensus       351 t~~~F~~~~p~~FiVGT--e~G~v~~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~  427 (555)
T KOG1587|consen  351 TSLKFEPTDPNHFIVGT--EEGKVYKGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE  427 (555)
T ss_pred             eeEeeccCCCceEEEEc--CCcEEEEEeccCCcccccccccccccc-cccCcceEeeecCCCccceeeeeccceeEeccc
Confidence            111111111 1111111  123332211111111 1    223233 6789999999999977666655 8999999987


Q ss_pred             ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933          243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                      .....++-       .+..+...+++++|+|..+..|+++..||.|.+||+........  ...             ..+
T Consensus       428 ~~~~~Pl~-------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv--~s~-------------~~~  485 (555)
T KOG1587|consen  428 DVIASPLL-------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV--LSQ-------------KVC  485 (555)
T ss_pred             cCCCCcch-------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc--ccc-------------ccc
Confidence            62222221       15566777999999999988999999999999999986532211  100             111


Q ss_pred             cccccEEEEeeCCCEEEEEec-CeEEEEecC
Q 010933          323 IASISDIKFANDGQHLLSRDY-MNLKLWDIR  352 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~  352 (497)
                      ....+.+.|+++|+.|++|++ |.+.+|++.
T Consensus       486 ~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  486 SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            256788889999999999987 999999995

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=2.7e-15  Score=140.15  Aligned_cols=267  Identities=13%  Similarity=0.119  Sum_probs=163.3

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEee-cCCeEEEEEecC-CccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      ..+.+.+....++++|+|++|++++ .++.|.+|+++. +..                     ....... ..       
T Consensus        29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l---------------------~~~~~~~-~~-------   79 (330)
T PRK11028         29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL---------------------TFAAESP-LP-------   79 (330)
T ss_pred             eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---------------------EEeeeec-CC-------
Confidence            3344556778899999999987765 578899999863 221                     1111111 11       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                           +....++|  +|+++++++++ .++.|.+|+++. +....                                   
T Consensus        80 -----~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-----------------------------------  117 (330)
T PRK11028         80 -----GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVA-----------------------------------  117 (330)
T ss_pred             -----CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----------------------------------
Confidence                 33567888  68999888886 488999999863 22110                                   


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                            .+..  ..+......++++|+++.++++  .++.|.+||++..+...... .......
T Consensus       118 ----------------------~~~~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~  172 (330)
T PRK11028        118 ----------------------PIQI--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV  172 (330)
T ss_pred             ----------------------ceee--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC
Confidence                                  0000  0112335668899999988654  78999999998433221100 0000011


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                       .......++|+|++ ++++++.. ++.|.+||+.......+....+......      +. +......+.++|+|++++
T Consensus       173 -~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~-~~~~~~~i~~~pdg~~ly  243 (330)
T PRK11028        173 -EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FS-DTRWAADIHITPDGRHLY  243 (330)
T ss_pred             -CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CC-CCccceeEEECCCCCEEE
Confidence             12346789999999 88877766 8999999997421110111111110000      00 012234688999999999


Q ss_pred             EEe--cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 010933          340 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV  411 (497)
Q Consensus       340 ~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~  411 (497)
                      ++.  ++.|.+|++..++..+. +..+.....         .   .+.+.++|||++|+++.. ++.|.+|+++.
T Consensus       244 v~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~---------~---p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        244 ACDRTASLISVFSVSEDGSVLS-FEGHQPTET---------Q---PRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EecCCCCeEEEEEEeCCCCeEE-EeEEEeccc---------c---CCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            873  38999999975333222 222211000         0   147999999999998776 89999998853

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=6.6e-16  Score=147.49  Aligned_cols=223  Identities=13%  Similarity=0.143  Sum_probs=151.5

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.++.|+| -+..+++.|..+|.|.+||+..+......                                        
T Consensus       243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s----------------------------------------  281 (555)
T KOG1587|consen  243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPS----------------------------------------  281 (555)
T ss_pred             CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCc----------------------------------------
Confidence            6799999986 44567888889999999999877632211                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc----cCCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDL  262 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~  262 (497)
                                     ++......|..+++.+.|..+.  .-++++ .||.|..|+++.-.............    -..-
T Consensus       282 ---------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~  346 (555)
T KOG1587|consen  282 ---------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK  346 (555)
T ss_pred             ---------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence                           1111125889999999996533  447777 99999999887333222221111000    0022


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR  341 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~  341 (497)
                      ...+++++|.+..+..|++|+.+|.|.--+-...+.-..  ..++.       ...+..|.++|+++.++|-+. .++++
T Consensus       347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~fls~  417 (555)
T KOG1587|consen  347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKG-------HSTFITHIGPVYAVSRNPFYPKNFLSV  417 (555)
T ss_pred             ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--ccccc-------cccccccCcceEeeecCCCccceeeee
Confidence            356789999998888999999999988744332221100  11122       223456789999999999775 44455


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~  412 (497)
                      .|..++||.-.....++..+..+...+               ++++|||... .++++..||.|.+||+...
T Consensus       418 gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  418 GDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             ccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            689999999873367777776665533               7999999764 6667788999999999865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=8.2e-17  Score=154.90  Aligned_cols=213  Identities=14%  Similarity=0.156  Sum_probs=144.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+.+++|  +|||+.|+.++.+   ..|.+||+.+++...+.                                     
T Consensus       204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-------------------------------------  244 (429)
T PRK01742        204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-------------------------------------  244 (429)
T ss_pred             CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-------------------------------------
Confidence            77999999  7899999988643   46999998876532211                                     


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEE--eCccCceeeEEeecCCCccCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                           .+ .+|   ...++|+|||+.|+.+  .+|.+.||  |+. ++....        +..+
T Consensus       245 ---------------------~~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~  290 (429)
T PRK01742        245 ---------------------SF-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSG  290 (429)
T ss_pred             ---------------------cC-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccC
Confidence                                 01 233   2357999999988875  57766665  554 333322        3445


Q ss_pred             CCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      ...+....|+|+| +.|+.++ .++..+||++.......   ..+..              ..  ....|+|+|++|+..
T Consensus       291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~ia~~  350 (429)
T PRK01742        291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTLVMI  350 (429)
T ss_pred             CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEEEEE
Confidence            6677889999999 7666554 57888888875432110   11111              12  457899999999887


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC--CCCcceEEE
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITV  419 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~--~~~~~~~~~  419 (497)
                      ....+.+||+.+ ++..........                 ..+.|+|||++|+.++.++.+.+|.+.  ++ .....+
T Consensus       351 ~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l  411 (429)
T PRK01742        351 NGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARL  411 (429)
T ss_pred             cCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEc
Confidence            555677799976 543322222111                 268899999999999999988888763  34 345778


Q ss_pred             eccCcceeeeEeecC
Q 010933          420 EAGKNENRKPILQAA  434 (497)
Q Consensus       420 ~~~~~~v~~~~~~~~  434 (497)
                      .+|.+.+..++|+|.
T Consensus       412 ~~~~g~~~~p~wsp~  426 (429)
T PRK01742        412 PGSDGQVKFPAWSPY  426 (429)
T ss_pred             cCCCCCCCCcccCCC
Confidence            888888888899873

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2e-17  Score=147.66  Aligned_cols=305  Identities=16%  Similarity=0.186  Sum_probs=216.0

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .-.|.+.|+.+.|+..|..|++|+.|..|.+||+..+..                      .+.-..||.          
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----------------------~l~f~SGH~----------  185 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----------------------KLSFESGHC----------  185 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCc----------------------ccccccccc----------
Confidence            335999999999999999999999999999999988643                      123345788          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCch-heeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                        ..|..-.|.|..+.+-+++++.||.+++=.+... .+...                                      
T Consensus       186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t--------------------------------------  225 (559)
T KOG1334|consen  186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT--------------------------------------  225 (559)
T ss_pred             --cchhhhhccCCCCCcCceeccccCceeeeeeccccceecc--------------------------------------
Confidence              7788889998888889999999999998765432 21111                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                          +. +..|.++|..++.-|+. ..|.++ .|+.+.-+|++......... .    ...+..
T Consensus       226 --------------------~r-l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-c----r~~~~~  279 (559)
T KOG1334|consen  226 --------------------KR-LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-C----READEK  279 (559)
T ss_pred             --------------------ee-cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-e----eccCCc
Confidence                                11 26888999999998854 455666 99999999998433222221 1    122223


Q ss_pred             ---CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc--ccceecccccccCCccccccccccccEEEEeeCC-CEE
Q 010933          265 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH--SARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL  338 (497)
Q Consensus       265 ---~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l  338 (497)
                         ....++.+|...+.+++++.|..+++||.+.-.....  .++.|..|.-       .......|++++|+.++ .+|
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl-------~~d~~v~ITgl~Ysh~~sElL  352 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL-------VEDDPVNITGLVYSHDGSELL  352 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc-------cccCcccceeEEecCCcccee
Confidence               5678899998867999999999999999986322100  0011111000       01113579999999665 566


Q ss_pred             EEEecCeEEEEecCCC-C----------ceeee-eeecccccccccccCCCCCccceeEEE-EcCCCCEEEEEeCCCcEE
Q 010933          339 LSRDYMNLKLWDIRMD-S----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       339 ~~~~~~~i~lwd~~~~-~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~s~~~dg~i~  405 (497)
                      ++-.|-.|+++.-... +          ..+.. +++|....          .|   -.+- |-|...|+++|+.-|.|.
T Consensus       353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~----------TV---KgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR----------TV---KGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             eeecccceEEeccccccCCCCCCCcchhhccchhhccccccc----------cc---ceeeeccCccceEEecCccceEE
Confidence            6657788999954321 1          22333 78887643          12   2444 567889999999999999


Q ss_pred             EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC
Q 010933          406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  458 (497)
Q Consensus       406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~  458 (497)
                      ||+-.++ .+...+++-..-|+++.-.|-       +++||+.|-|.- +||.+
T Consensus       420 iW~K~t~-eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  420 IWDKKTG-EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             EEecchh-HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence            9998887 444788888888888887773       677999999988 99944

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=2.1e-14  Score=139.65  Aligned_cols=316  Identities=23%  Similarity=0.366  Sum_probs=219.8

Q ss_pred             cceEEEEE-cCCCC-EEEEeec-CCeEEEEEecC-CccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           33 DIVSAIEF-DKTGD-YLAVGDR-GGRVILFETVG-GKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        33 ~~I~~i~~-sp~g~-~lasg~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..+..+.+ ++++. +++..+. |+.+.+|+... .                       .....+..|.           
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------------~~~~~~~~~~-----------  155 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG-----------------------KLIRTLEGHS-----------  155 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCC-----------------------eEEEEEecCc-----------
Confidence            36777777 88887 5555444 89999999976 3                       3356678888           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                       ..|..++|  ++++..+++++. |+.+++|++..+...                                         
T Consensus       156 -~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  191 (466)
T COG2319         156 -ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRTGKPL-----------------------------------------  191 (466)
T ss_pred             -ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCCCceE-----------------------------------------
Confidence             88999999  678878888885 999999999873322                                         


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                         ..+ .+|...+.+++|+|++. .++++ .|+.|++||.. .+.....      .+..|...
T Consensus       192 -------------------~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~~~~  244 (466)
T COG2319         192 -------------------STL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGHSDS  244 (466)
T ss_pred             -------------------Eee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCCCcc
Confidence                               222 56899999999999998 66665 99999999887 4444441      15667766


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      . ...|+|++ ..+++++.|+.+++||++.....   ...+             ..|...+.++.|+|++..+++++ ++
T Consensus       245 ~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~d~  306 (466)
T COG2319         245 V-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTL-------------SGHSSSVLSVAFSPDGKLLASGSSDG  306 (466)
T ss_pred             e-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEE-------------ecCCccEEEEEECCCCCEEEEeeCCC
Confidence            4 33899998 89999999999999999876431   0111             12357899999999888888764 47


Q ss_pred             eEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcceEEEec
Q 010933          345 NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                      .+.+||... ........  .|...+               ..+.|.+++..++.+ ..|+.+.+|++.... . .....
T Consensus       307 ~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~-~~~~~  368 (466)
T COG2319         307 TVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P-LKTLE  368 (466)
T ss_pred             cEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-e-eEEec
Confidence            899999876 55444444  454422               467774343556555 688999999998875 2 22222


Q ss_pred             cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccc-cccC-CCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          422 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELS-YNLS-SKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       422 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~-~~~~-~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      ....+..+.+.+ . ...     ...+..++. .+|......... .... ..+....+.+++..++.++ +..+.+|.
T Consensus       369 ~~~~~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         369 GHSNVLSVSFSP-D-GRV-----VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             CCceEEEEEECC-C-CCE-----EEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            222266777766 4 333     334666677 888333222221 1122 7899999999999998866 55577775

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=5.8e-17  Score=149.13  Aligned_cols=262  Identities=16%  Similarity=0.220  Sum_probs=175.3

Q ss_pred             EcCCCCEEEE--eecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933           40 FDKTGDYLAV--GDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  117 (497)
Q Consensus        40 ~sp~g~~las--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~  117 (497)
                      |..+..++|+  .+..|.|-||++.....                 .|+...-..+.+              ..|+++.|
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGr-----------------LPDgv~p~l~Ng--------------t~vtDl~W  635 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGR-----------------LPDGVMPGLFNG--------------TLVTDLHW  635 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCC-----------------CCcccccccccC--------------ceeeeccc
Confidence            4445556654  34568999999875321                 333322222222              45999999


Q ss_pred             EecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933          118 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  197 (497)
Q Consensus       118 ~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (497)
                      .| -|.+.|+.++.||.|++|.+..+......                                                
T Consensus       636 dP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~------------------------------------------------  666 (1012)
T KOG1445|consen  636 DP-FDDERLAVATDDGQINLWRLTANGLPENE------------------------------------------------  666 (1012)
T ss_pred             CC-CChHHeeecccCceEEEEEeccCCCCccc------------------------------------------------
Confidence            75 46678999999999999999876533221                                                


Q ss_pred             cCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC
Q 010933          198 GNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  275 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  275 (497)
                           ..+...+ ..|...|+++.|+| -...|+++ .|-+|++||+........        +.+|.+.|..++|+|+|
T Consensus       667 -----~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~--------l~gHtdqIf~~AWSpdG  732 (1012)
T KOG1445|consen  667 -----MTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR--------LVGHTDQIFGIAWSPDG  732 (1012)
T ss_pred             -----CCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe--------eccCcCceeEEEECCCC
Confidence                 1233333 79999999999999 45577777 999999999994433322        78999999999999999


Q ss_pred             CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-----ecCeEEEEe
Q 010933          276 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-----DYMNLKLWD  350 (497)
Q Consensus       276 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-----~~~~i~lwd  350 (497)
                       +.+|+.+.||+|++|+.++++.     .+.++ ....         ...-..+.|--+|+++++.     +...|.+||
T Consensus       733 -r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg-~gpv---------gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~  796 (1012)
T KOG1445|consen  733 -RRIATVCKDGTLRVYEPRSREQ-----PVYEG-KGPV---------GTRGARILWACDGRIVIVVGFDKSSERQVQMYD  796 (1012)
T ss_pred             -cceeeeecCceEEEeCCCCCCC-----ccccC-CCCc---------cCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence             9999999999999999998764     23333 1000         1234567888899998874     237899999


Q ss_pred             cCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          351 IRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       351 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      .++-. .++.+........           +   .--.+.+|.. ++++|-.|..|++|.+-........+..|..+
T Consensus       797 Aq~l~~~pl~t~~lDvaps-----------~---LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp  859 (1012)
T KOG1445|consen  797 AQTLDLRPLYTQVLDVAPS-----------P---LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSP  859 (1012)
T ss_pred             hhhccCCcceeeeecccCc-----------c---ccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCC
Confidence            87521 3333222111110           0   1234555655 45678889999999987665544555544443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=3.9e-15  Score=139.01  Aligned_cols=238  Identities=9%  Similarity=-0.014  Sum_probs=147.7

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEE
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV  291 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~  291 (497)
                      .....++++|+++.|+++  .++.|.+|+++..+.. ....    .. ........++++|++ ++|++++. ++.|.+|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~----~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~  107 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA----ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVS  107 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEE
Confidence            446678999999988765  6899999999733322 2110    01 122346789999999 77777654 8999999


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceee------eeee
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA------TFKI  363 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~------~~~~  363 (497)
                      ++.+..........+..              ......++++|+|+++++++  ++.|.+||+...+.+..      ....
T Consensus       108 ~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~  173 (330)
T PRK11028        108 PLDKDGIPVAPIQIIEG--------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE  173 (330)
T ss_pred             EECCCCCCCCceeeccC--------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence            99743222111111111              13467788999999987764  39999999975333211      1111


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCC--Cc-ceEEEeccC------cceeeeEeec
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG--SA-GGITVEAGK------NENRKPILQA  433 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~--~~-~~~~~~~~~------~~v~~~~~~~  433 (497)
                      ...+                ..+.|+|+|++++++.. ++.|.+|+++..  .. ....+..+.      .....+.++|
T Consensus       174 g~~p----------------~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        174 GAGP----------------RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CCCC----------------ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            1111                47999999999988877 899999999742  21 122232211      1122466777


Q ss_pred             CCCcccccccceeEeec-cCc-eecCC--CCCccccccc---CCCeEEEEEecCCCEEEEEe--CCceEEEe
Q 010933          434 APRARRSSLSNLTRGLY-RQA-HENSS--SGHHELSYNL---SSKLLHLAWHPTTNLIACAN--GNSLFFHY  496 (497)
Q Consensus       434 ~~~~~~~~~~~l~~~~~-d~~-~iw~~--~~~~~~~~~~---~~~i~~l~~~p~~~~la~~~--~~~~~i~~  496 (497)
                        ++++     ++++.. ++. .+|..  .+......++   ......++++|+|++|+++.  ++.+.+|.
T Consensus       238 --dg~~-----lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        238 --DGRH-----LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             --CCCE-----EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence              6666     666644 344 77722  2211112221   12456899999999999877  56688874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=2.1e-15  Score=149.04  Aligned_cols=295  Identities=17%  Similarity=0.233  Sum_probs=180.9

Q ss_pred             ccccccchhhhhcCCCCCCCcccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCc
Q 010933            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPE   86 (497)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (497)
                      .++.+.|+..-..-.    ....|...|..++.++.. .++++|+.||+|++|+...-...         +       ..
T Consensus      1028 ~~p~~gW~p~G~lVA----hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------~-------~s 1087 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILVA----HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------G-------GS 1087 (1431)
T ss_pred             CCCCCCCCccceEee----hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------c-------ce
Confidence            345556665433211    233588889999888754 99999999999999998653210         0       01


Q ss_pred             ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933           87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                      ++...++..-.            .++.++..+  +.+..+|.++.||.|++.+++.........                
T Consensus      1088 ~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~---------------- 1137 (1431)
T KOG1240|consen 1088 ARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVA---------------- 1137 (1431)
T ss_pred             eeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEcccccccccee----------------
Confidence            11111221112            778888886  567799999999999999987632111100                


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCC-EEEEE-cCCeEEEEeCc
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE-TFVSA-DDLRINLWNLE  243 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-~l~~~-~d~~i~iwd~~  243 (497)
                                             ...++-+.             ......|..-++.. .+. .++.+ ..+.|..||++
T Consensus      1138 -----------------------~~~ri~n~-------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1138 -----------------------TQVRIPNL-------------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred             -----------------------eeeecccc-------------cCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence                                   00001000             11122233334432 333 56777 99999999998


Q ss_pred             cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      ........      ......+.|++++.+|.+ +.+++|+..|.+.+||+|-+..+    ..|..            ++.
T Consensus      1182 ~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~------------P~~ 1238 (1431)
T KOG1240|consen 1182 MRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH------------PAR 1238 (1431)
T ss_pred             hhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC------------ccc
Confidence            43322211      134456889999999999 89999999999999999977554    33332            223


Q ss_pred             ccccEEEEeeCC---CEEEEE-e-c-CeEEEEecCCCCceeeeeeecccccccccc-cCC-----CCCccceeEEEEcCC
Q 010933          324 ASISDIKFANDG---QHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-LYN-----NDSIFDKFECSVSGD  391 (497)
Q Consensus       324 ~~i~~~~~s~~g---~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~s~~  391 (497)
                      .+++.+..+|-.   ...+++ . . +.|.+|++.+ +.....+...... +.+.. ...     ..... ....++...
T Consensus      1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~~Ps~~~~kp~~~~-~~~~~~~~~ 1315 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYALPSNDARKPDSLA-GISCGVCEK 1315 (1431)
T ss_pred             CCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhhcccccCCCCCccc-ceeeecccC
Confidence            678888877643   345544 3 3 8999999987 6655555444111 11110 000     11111 123445555


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCc
Q 010933          392 GLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       392 ~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      +.++.+|+.|..|+.||....+.
T Consensus      1316 ~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             CceeeecCCccceeeccCCCccc
Confidence            67899999999999999887644

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.5e-15  Score=143.91  Aligned_cols=303  Identities=15%  Similarity=0.110  Sum_probs=193.7

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      ..-.||+|+++++... +..|.||...+++                       +++.+.+|.            .++.++
T Consensus        20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~-----------------------~i~~l~~~~------------a~l~s~   63 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGE-----------------------CITSLEDHT------------APLTSV   63 (792)
T ss_pred             cccccccCCcEEEEee-CCEEEEEecchHh-----------------------hhhhccccc------------Ccccee
Confidence            3457999999887765 4689999999884                       377899999            999999


Q ss_pred             EEEecCCC-CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933          116 RWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  194 (497)
Q Consensus       116 ~~~~s~~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (497)
                      .+.|++.. .++++++.||.|++||...+.+.+.........+..+...-.+..........+...+......-.+..+-
T Consensus        64 ~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~  143 (792)
T KOG1963|consen   64 IVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSR  143 (792)
T ss_pred             eecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceee
Confidence            99875554 57789999999999999999887776655443211110000000000000000111111111100111111


Q ss_pred             EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC
Q 010933          195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  274 (497)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  274 (497)
                      ..+...  .....-+...|.. -.++.+++.|+......+..+.+|+.....+....    ...-..|...+++.+++|+
T Consensus       144 ~~~~t~--~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~----~~~~~~Htf~~t~~~~spn  216 (792)
T KOG1963|consen  144 FVLATF--DSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSS----RDITVHHTFNITCVALSPN  216 (792)
T ss_pred             eEeeec--cccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeecc----chhhhhhcccceeEEeccc
Confidence            111110  0011111133333 45678888888777778889999998843321111    0123457777999999999


Q ss_pred             CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCC
Q 010933          275 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  353 (497)
Q Consensus       275 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~  353 (497)
                      + +++|++..||+|.+|.--......             .....+.-|...|++++|+++|.+|++|+- +.+.+|.+.+
T Consensus       217 ~-~~~Aa~d~dGrI~vw~d~~~~~~~-------------~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  217 E-RYLAAGDSDGRILVWRDFGSSDDS-------------ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             c-ceEEEeccCCcEEEEecccccccc-------------ccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            9 999999999999999754311111             111224456689999999999999999865 9999999987


Q ss_pred             CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          354 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                       ++ .+-+..-...               +..+.+|||+.+.+....|+.|.+-...+.
T Consensus       283 -~~-kqfLPRLgs~---------------I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  283 -GK-KQFLPRLGSP---------------ILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             -CC-cccccccCCe---------------eEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence             33 2222222222               268999999999999999999999998765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.2e-16  Score=145.40  Aligned_cols=266  Identities=16%  Similarity=0.160  Sum_probs=181.3

Q ss_pred             cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933           92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  171 (497)
Q Consensus        92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (497)
                      ++..|.            ..|..++|.  +....|++++.|+++++|++....  ...                      
T Consensus       289 tl~s~~------------d~ir~l~~~--~sep~lit~sed~~lk~WnLqk~~--~s~----------------------  330 (577)
T KOG0642|consen  289 TLRSHD------------DCIRALAFH--PSEPVLITASEDGTLKLWNLQKAK--KSA----------------------  330 (577)
T ss_pred             eeecch------------hhhhhhhcC--CCCCeEEEeccccchhhhhhcccC--Ccc----------------------
Confidence            667777            889999994  556689999999999999994311  000                      


Q ss_pred             cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933          172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  250 (497)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  250 (497)
                                                  ....+++.+| .+|.++|.|+++.+++..+.+| .||+|+.|++........
T Consensus       331 ----------------------------~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~d  381 (577)
T KOG0642|consen  331 ----------------------------EKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDD  381 (577)
T ss_pred             ----------------------------ccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccc
Confidence                                        0022455565 8999999999999999999999 999999997763322222


Q ss_pred             EeecC--CCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          251 IVDMK--PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       251 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      ..+..  ...+.||.+.++.+++++.. ..|++++.||++++|+......+     +|....+           .+.-..
T Consensus       382 s~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~-----~f~~~~e-----------~g~Pls  444 (577)
T KOG0642|consen  382 SYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPC-----TFGEPKE-----------HGYPLS  444 (577)
T ss_pred             ccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCcc-----ccCCccc-----------cCCcce
Confidence            11111  13578999999999999998 88999999999999998765431     1222000           123344


Q ss_pred             EEEeeCCCEEEEE--ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          329 IKFANDGQHLLSR--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       329 ~~~s~~g~~l~~~--~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                      +.+-.....++.+  ..+.-.++++.. ...+..+.......        ...-..+..+.++|...+.+++..|+.|++
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~--------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~  515 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPG--------PRRYPQINKVVSHPTADITFTAHEDRSIRF  515 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCc--------ccccCccceEEecCCCCeeEecccCCceec
Confidence            5543222112222  223333444433 22222222211110        000111247899999999999999999999


Q ss_pred             EEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC
Q 010933          407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  458 (497)
Q Consensus       407 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~  458 (497)
                      +|..++..+ ....+|...+.++++.+  ++-+     |++|+.|+. .+|+.
T Consensus       516 ~dn~~~~~l-~s~~a~~~svtslai~~--ng~~-----l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  516 FDNKTGKIL-HSMVAHKDSVTSLAIDP--NGPY-----LMSGSHDGSVRLWKL  560 (577)
T ss_pred             ccccccccc-hheeeccceecceeecC--CCce-----EEeecCCceeehhhc
Confidence            999998554 89999999999999999  5555     999999999 99944

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=5.2e-16  Score=129.81  Aligned_cols=207  Identities=9%  Similarity=0.175  Sum_probs=154.3

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ++..++++..|+. +-++|.+.+-|.+..|||++++.                    .+...+.+-+|+           
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--------------------~~~vkTQLIAHD-----------  196 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--------------------SGTVKTQLIAHD-----------  196 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeecc--------------------ccceeeEEEecC-----------
Confidence            5678999999997 67899999999999999999863                    224456788898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|.. ..-+.|+++|.||.+|+||++.-+-..+                                        
T Consensus       197 -KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTI----------------------------------------  234 (364)
T KOG0290|consen  197 -KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTI----------------------------------------  234 (364)
T ss_pred             -cceeEEEecc-CccceEEEecCCCcEEEEEecccccceE----------------------------------------
Confidence             7799999962 3456899999999999999987552211                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                           +|.-             .....+..-++|++ |-+++++ + +...|.|.|++.....+.       ++.+|.+.
T Consensus       235 -----IYE~-------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva-------~L~~H~a~  289 (364)
T KOG0290|consen  235 -----IYED-------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA-------RLRNHQAS  289 (364)
T ss_pred             -----EecC-------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee-------hhhcCccc
Confidence                 1110             11145677788987 5566776 4 788999999996655554       38999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcc--cccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD  342 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~  342 (497)
                      |..++|.|..+..|.+++.|..+.+||+.+...  .......+.              -.+.|+.+.|++ .+.+++.+.
T Consensus       290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--------------a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--------------AGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             ccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--------------ccceeeeeeecccCCCEEEEEe
Confidence            999999999889999999999999999986432  111111111              136799999996 467888876


Q ss_pred             cCeEEE
Q 010933          343 YMNLKL  348 (497)
Q Consensus       343 ~~~i~l  348 (497)
                      .+.+.+
T Consensus       356 ~kklei  361 (364)
T KOG0290|consen  356 GKKLEI  361 (364)
T ss_pred             cCeeeE
Confidence            655554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.1e-16  Score=143.16  Aligned_cols=240  Identities=20%  Similarity=0.266  Sum_probs=159.6

Q ss_pred             CCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc-ccccCccccccc
Q 010933           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE-FQSHEPEFDYLK  104 (497)
Q Consensus        26 ~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~  104 (497)
                      .+..+|++.|+|++|+.+|.+||+|+.|-.+.|||.-.-+                       .+.. -.||.       
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-----------------------llhsI~TgHt-------   93 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-----------------------LLHSISTGHT-------   93 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-----------------------eeeeeecccc-------
Confidence            3566899999999999999999999999999999986432                       2333 36898       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           +.|.++.|.|..+++.+++|+.|..|+++|+...+......                +                 
T Consensus        94 -----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~----------------~-----------------  135 (758)
T KOG1310|consen   94 -----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH----------------G-----------------  135 (758)
T ss_pred             -----cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc----------------C-----------------
Confidence                 89999999998888999999999999999998533111000                0                 


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCC--CccC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMD  260 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~  260 (497)
                                       -.+.... +..|...|..++..|++ ..+-++ .||+|+-+|++..-.+-.-.+...  ..+-
T Consensus       136 -----------------~~~~~~~-~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  136 -----------------MEETTRC-WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             -----------------ccchhhh-hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence                             0011111 26888999999999988 566677 999999999984222211100000  0011


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccC----Cccccccc-----------ccc
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG----SKSFFTEI-----------IAS  325 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------~~~  325 (497)
                      ..--...++..+|..+.+||+|+.|-..++||.|...........+..  ..+.    -..+-.+|           ...
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~  275 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRYITC  275 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccceee
Confidence            112345789999998899999999999999996542111100011000  0000    00011111           123


Q ss_pred             ccEEEEeeCCCEEEEE-ecCeEEEEecCC
Q 010933          326 ISDIKFANDGQHLLSR-DYMNLKLWDIRM  353 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~-~~~~i~lwd~~~  353 (497)
                      ++-++|+|+|.-|+.. +...|+++|+..
T Consensus       276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  276 CTYVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             eEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence            5678899999777665 447899999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5.2e-16  Score=132.75  Aligned_cols=263  Identities=10%  Similarity=0.083  Sum_probs=164.1

Q ss_pred             CCcceEEEEEcC--CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           31 DVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        31 h~~~I~~i~~sp--~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +...++-++|..  .+..+.+|+.||.|++||+....+                     .....+.+|.+          
T Consensus        69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---------------------~a~~~~~~~~~----------  117 (376)
T KOG1188|consen   69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---------------------SARISWTQQSG----------  117 (376)
T ss_pred             CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---------------------hhheeccCCCC----------
Confidence            566777888876  456789999999999999987543                     12233344431          


Q ss_pred             ccceeEEEEEecCCCCEEEEEe----CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                       .+-.+++-  +.+++.++++.    .|-.|.+||++..+.                                       
T Consensus       118 -~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---------------------------------------  155 (376)
T KOG1188|consen  118 -TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ---------------------------------------  155 (376)
T ss_pred             -CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc---------------------------------------
Confidence             34555554  34556666664    567788888876552                                       


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                          +++.+...|...|+++.|+| +.+.|++| .||.|.+||+......-..     ...-.|
T Consensus       156 --------------------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-----~~viN~  210 (376)
T KOG1188|consen  156 --------------------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-----LHVINH  210 (376)
T ss_pred             --------------------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----HHhhcc
Confidence                                23334579999999999999 66788899 9999999999843321111     113357


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEE-E
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL-S  340 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~-~  340 (497)
                      ...|..+.|...+-+.|.+-+..+...+|+++.+.......+.-.    .......... -..+... .+| ++...+ .
T Consensus       211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~----~~~d~r~~~~-~dY~I~~-~~~~~~~~~~l~  284 (376)
T KOG1188|consen  211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV----SADDLRKEDN-CDYVINE-HSPGDKDTCALA  284 (376)
T ss_pred             cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc----hhhhHHhhhh-hhheeec-ccCCCcceEEEe
Confidence            788999999987645788899999999999998764321111100    0000000000 0111111 123 233333 3


Q ss_pred             Eec-CeEEEEecC--CCC---ceeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          341 RDY-MNLKLWDIR--MDS---TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       341 ~~~-~~i~lwd~~--~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      |++ +...++-+.  ..+   +.+..+.+ |...+               +++.|...+.++.|||+||.+.+|..+..
T Consensus       285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV---------------R~i~~~~~~~~l~TGGEDG~l~~Wk~~da  348 (376)
T KOG1188|consen  285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV---------------RDILFDVKNDVLYTGGEDGLLQAWKVEDA  348 (376)
T ss_pred             ccccCceeEEEeeecccccccCccccccCCcHHHH---------------HHHhhhcccceeeccCCCceEEEEecCCc
Confidence            454 655555443  112   33444444 33322               67888888899999999999999997543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.71  E-value=3.3e-15  Score=126.86  Aligned_cols=227  Identities=16%  Similarity=0.234  Sum_probs=166.1

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ..+|+|.+|++|++.+|.+.....|.||...+..                    .++...++..|+            ..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~   57 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI   57 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence            4699999999999999999999999999988764                    257788899999            88


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeec-CchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      |+.|.|  +|....|++++.|+...+|.. .++..+..                                          
T Consensus        58 vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkpt------------------------------------------   93 (361)
T KOG1523|consen   58 VTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPT------------------------------------------   93 (361)
T ss_pred             eeEEee--cCCCCceeEccCCCCccccccCCCCeeccc------------------------------------------
Confidence            999999  677889999999999999988 44443321                                          


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                      ..+ ..+....+++.|+|.++.|++| ....|.+|-++. +...=   .....-..+...|.++
T Consensus        94 ----------------lvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWW---VsKhikkPirStv~sl  152 (361)
T KOG1523|consen   94 ----------------LVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWW---VSKHIKKPIRSTVTSL  152 (361)
T ss_pred             ----------------eeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEec-cccee---hhhhhCCccccceeee
Confidence                            111 3567789999999999999999 888999998873 32210   0001134577889999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc-------ccccccccccEEEEeeCCCEEEEE-
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS-------FFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      +|+|++ -+|++|+.|+..|++..--...-.+..      ...-+...       .+..-.+.+..+.|+|+|..|+-. 
T Consensus       153 dWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpa------p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  153 DWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPA------PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             eccCCc-ceecccccCcceeEEEEeeeccccCCC------CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence            999998 899999999999999764322111000      00000000       111224789999999999999874 


Q ss_pred             ecCeEEEEecCCCCceeeeee
Q 010933          342 DYMNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~  362 (497)
                      .|..+.+-|...+.+.+....
T Consensus       226 Hds~v~~~da~~p~~~v~~~~  246 (361)
T KOG1523|consen  226 HDSTVSFVDAAGPSERVQSVA  246 (361)
T ss_pred             CCCceEEeecCCCchhccchh
Confidence            679999998865333344443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.71  E-value=1.4e-14  Score=123.50  Aligned_cols=334  Identities=16%  Similarity=0.148  Sum_probs=197.5

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      -+.|||+|+|+|+.+.- .+.|-|.++-+.                       .+.+.. -            +.|.-+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-----------------------~qlf~c-l------------dki~yie   55 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-----------------------HQLFLC-L------------DKIVYIE   55 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhH-----------------------HHHHHH-H------------HHhhhee
Confidence            57899999999998865 788888776432                       111111 1            5578889


Q ss_pred             EEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933          117 WCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  195 (497)
Q Consensus       117 ~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (497)
                      |  ..|..+++.+ ..|+.|.+|++...+....                                               
T Consensus        56 W--~ads~~ilC~~yk~~~vqvwsl~Qpew~ck-----------------------------------------------   86 (447)
T KOG4497|consen   56 W--KADSCHILCVAYKDPKVQVWSLVQPEWYCK-----------------------------------------------   86 (447)
T ss_pred             e--eccceeeeeeeeccceEEEEEeecceeEEE-----------------------------------------------
Confidence            9  5676676665 6888999999986553211                                               


Q ss_pred             eecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC
Q 010933          196 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  273 (497)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  273 (497)
                                    .......+.+++|+|+|+.+.. + .+-.|.+|.+. +.....        ++.....+..++|+|
T Consensus        87 --------------Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~-t~~~~~--------~~~pK~~~kg~~f~~  143 (447)
T KOG4497|consen   87 --------------IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN-TQKGYL--------LPHPKTNVKGYAFHP  143 (447)
T ss_pred             --------------eccCCCcceeeeECCCcceEeeeecceeEEEEEEec-cceeEE--------ecccccCceeEEECC
Confidence                          1344667889999999977655 5 89999999998 444443        233445668899999


Q ss_pred             CCCcEEEEEeCCCeEEE--------------EEccCCccc-------ccccceecccccccCCccccccc-cccccEEEE
Q 010933          274 IYCNLLAYSSSRGFVRL--------------VDMRQSALC-------DHSARILRDAAESHGSKSFFTEI-IASISDIKF  331 (497)
Q Consensus       274 ~~~~~l~~~~~dg~i~v--------------~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~  331 (497)
                      +| ++.+.++.......              +++.+-...       ...+.+++.    .-....+.-| .-.+..++|
T Consensus       144 dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~----~Leykv~aYe~~lG~k~v~w  218 (447)
T KOG4497|consen  144 DG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN----VLEYKVYAYERGLGLKFVEW  218 (447)
T ss_pred             CC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc----hhhheeeeeeeccceeEEEe
Confidence            99 88777665321111              111110000       000000100    0000000001 246788999


Q ss_pred             eeCCCEEEEEe-cCeEEEEecCCCCceeeee------------------------------------eeccccc------
Q 010933          332 ANDGQHLLSRD-YMNLKLWDIRMDSTPVATF------------------------------------KIHEHLR------  368 (497)
Q Consensus       332 s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~------------------------------------~~~~~~~------  368 (497)
                      +|.+++|+.|+ |+.+|+.+--+ .+++..+                                    ..|....      
T Consensus       219 sP~~qflavGsyD~~lrvlnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE  297 (447)
T KOG4497|consen  219 SPCNQFLAVGSYDQMLRVLNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE  297 (447)
T ss_pred             ccccceEEeeccchhhhhhceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence            99999999996 47777755321 1111100                                    0000000      


Q ss_pred             --------ccccc-cCCCCCccceeEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc
Q 010933          369 --------PKLCD-LYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  437 (497)
Q Consensus       369 --------~~~~~-~~~~~~~~~~~~~~~s~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  437 (497)
                              ..+-+ ....+.-.++-.++|++|..+++|-.+  -+.+-+||++..+.  ...-....+|+...+.|..+ 
T Consensus       298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l--~avLiQk~piraf~WdP~~p-  374 (447)
T KOG4497|consen  298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL--HAVLIQKHPIRAFEWDPGRP-  374 (447)
T ss_pred             hhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh--hhhhhhccceeEEEeCCCCc-
Confidence                    00000 000111112356899999999998765  46799999987533  33333456888889988632 


Q ss_pred             ccccccceeEeeccCc-eecCCCC-CcccccccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933          438 RRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  494 (497)
Q Consensus       438 ~~~~~~~l~~~~~d~~-~iw~~~~-~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i  494 (497)
                      +      |+....... ++|.+.+ .........=.|..+.|+.+|..|+..+.|...+
T Consensus       375 r------L~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~  427 (447)
T KOG4497|consen  375 R------LVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCV  427 (447)
T ss_pred             e------EEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence            2      333333333 8994443 2333333335899999999999999998876543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=9.6e-16  Score=147.53  Aligned_cols=217  Identities=12%  Similarity=0.088  Sum_probs=145.8

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      ..|...+.+.+|||||++||..+.+   ..|++||+.+++.                     +.+..+.+|.        
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---------------------~~l~~~~g~~--------  250 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---------------------KVVASFRGHN--------  250 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---------------------EEEecCCCcc--------
Confidence            4567789999999999999988754   3799999987643                     2234444444        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEe-CCccEEEee--cCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWK--VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                             ..++|  +|||+.|+.++ .+|.+.||.  +.++....                                   
T Consensus       251 -------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-----------------------------------  286 (429)
T PRK01742        251 -------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-----------------------------------  286 (429)
T ss_pred             -------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-----------------------------------
Confidence                   45789  78999888764 688777664  44333211                                   


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                                + ..+...+....|+|+|+.|+.+  .++...||+++..+.....       + 
T Consensus       287 --------------------------l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-------l-  331 (429)
T PRK01742        287 --------------------------L-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-------V-  331 (429)
T ss_pred             --------------------------e-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-------e-
Confidence                                      1 3445567789999999987764  6788888887643333332       1 


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      .+..  ....|+|+| +.|++.+.++ +.+||+.+++..     .+...              .....+.|+|+|++|+.
T Consensus       332 ~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~--------------~~~~~~~~sPdG~~i~~  388 (429)
T PRK01742        332 GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST--------------FLDESPSISPNGIMIIY  388 (429)
T ss_pred             cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC--------------CCCCCceECCCCCEEEE
Confidence            2222  457899999 8888887765 556999887532     11110              11245789999999998


Q ss_pred             Ee-cCeEEEEecC-CCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933          341 RD-YMNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       341 ~~-~~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                      ++ ++...+|++. .+++...++..|.+.+               ...+|+|-
T Consensus       389 ~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~  426 (429)
T PRK01742        389 SSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY  426 (429)
T ss_pred             EEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence            75 4666666642 2377788887776643               46888874

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=7.4e-17  Score=143.21  Aligned_cols=265  Identities=12%  Similarity=0.109  Sum_probs=200.9

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      -.-+.+.|  +.+|++++.++.-|.+-.+|+.++++..-.                                        
T Consensus       130 FGPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------------------  167 (545)
T KOG1272|consen  130 FGPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------------------  167 (545)
T ss_pred             cCCeeeee--cCCccEEEecCCccceeeeecccceeeeee----------------------------------------
Confidence            44567888  689999999999999999999988754311                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                            .-...|.++.|..+.+++|++....+++||-. +- .++.       +. ....|..+
T Consensus       168 ----------------------~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-Gt-ElHC-------lk-~~~~v~rL  215 (545)
T KOG1272|consen  168 ----------------------NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GT-ELHC-------LK-RHIRVARL  215 (545)
T ss_pred             ----------------------ehhhhhhhhhhhcchHHHHhhhhceEEEecCC-Cc-EEee-------hh-hcCchhhh
Confidence                                  12345778899888889999999999999977 33 3332       22 33567899


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~l  348 (497)
                      .|-|.. .+|++++..|.++.-|+.+|+++.    .+..             -.+.+..|.-+|-...+-.| +.|+|.+
T Consensus       216 eFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa----~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSl  277 (545)
T KOG1272|consen  216 EFLPYH-FLLVAASEAGFLKYQDVSTGKLVA----SIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSL  277 (545)
T ss_pred             cccchh-heeeecccCCceEEEeechhhhhH----HHHc-------------cCCccchhhcCCccceEEEcCCCceEEe
Confidence            999998 889999999999999999998763    2222             12567788888888788888 4599999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  428 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  428 (497)
                      |.... ..++..+-.|.+.+               .++++.++|+|+||.|.|..++|||++.-..+ .++.. ..+...
T Consensus       278 WSP~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~  339 (545)
T KOG1272|consen  278 WSPNS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASN  339 (545)
T ss_pred             cCCCC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCccc
Confidence            99986 78888888999876               69999999999999999999999999987544 33333 345556


Q ss_pred             eEeecCCCcccccccceeEeeccCceecC---C--CCCccccc--ccCCCeEEEEEecCCCEEEEEeCCce
Q 010933          429 PILQAAPRARRSSLSNLTRGLYRQAHENS---S--SGHHELSY--NLSSKLLHLAWHPTTNLIACANGNSL  492 (497)
Q Consensus       429 ~~~~~~~~~~~~~~~~l~~~~~d~~~iw~---~--~~~~~~~~--~~~~~i~~l~~~p~~~~la~~~~~~~  492 (497)
                      +++|.        -+.||.+-.+-..+|.   .  +.......  ....+|..|.|.|.+++|-+|..+++
T Consensus       340 ls~Sq--------kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  340 LSLSQ--------KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             ccccc--------ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence            66655        3457877777779991   1  11111111  23459999999999999998887664

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=2.3e-15  Score=127.76  Aligned_cols=245  Identities=11%  Similarity=0.094  Sum_probs=173.6

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|++.+|  ++|...++.+-....|.||...+.+.                                            
T Consensus        11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------   44 (361)
T KOG1523|consen   11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------   44 (361)
T ss_pred             Cceeeeee--cCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence            88999999  78999999999999999999877651                                            


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                   .+...++ ..|...|+.++|+|..+.|++| .|..-++|....++.-..++     .+..+....++
T Consensus        45 -------------w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl-----vLlRiNrAAt~  105 (361)
T KOG1523|consen   45 -------------WEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-----VLLRINRAATC  105 (361)
T ss_pred             -------------ceeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce-----eEEEeccceee
Confidence                         1233333 7899999999999999999999 99999999985344333221     25568889999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      +.|+|.+ +.||+|+.-..|.||-++..+.-... +.+.            ..+...|+++.|+|++-+|++|+ |+..|
T Consensus       106 V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs-Khik------------kPirStv~sldWhpnnVLlaaGs~D~k~r  171 (361)
T KOG1523|consen  106 VKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS-KHIK------------KPIRSTVTSLDWHPNNVLLAAGSTDGKCR  171 (361)
T ss_pred             EeecCcC-ceEEeccCccEEEEEEEecccceehh-hhhC------------CccccceeeeeccCCcceecccccCccee
Confidence            9999999 99999999999999998764321100 1011            12346799999999999999984 79899


Q ss_pred             EEecCCC---CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          348 LWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       348 lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      ++..--.   .++...--+...+...++..+.... -.+..+.|+|+|..|+-.+.|..+.+=|.....+....+....-
T Consensus       172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g-gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~l  250 (361)
T KOG1523|consen  172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG-GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQL  250 (361)
T ss_pred             EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC-CceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccC
Confidence            8875310   1111111111111112222221111 11368999999999999999999999998776544455555557


Q ss_pred             ceeeeEeecC
Q 010933          425 ENRKPILQAA  434 (497)
Q Consensus       425 ~v~~~~~~~~  434 (497)
                      |..++.+..+
T Consensus       251 P~ls~~~ise  260 (361)
T KOG1523|consen  251 PLLSVSWISE  260 (361)
T ss_pred             CceeeEeecC
Confidence            7777777653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.70  E-value=3.6e-16  Score=129.02  Aligned_cols=298  Identities=9%  Similarity=0.069  Sum_probs=170.2

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      .-.+++|.            +.|+++.|   ..+.+|+++..-|.|++|++.+..-.........            ..+
T Consensus         7 ~fvLRp~~------------~~v~s~~f---qa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~------------~~i   59 (323)
T KOG0322|consen    7 FFVLRPHS------------SSVTSVLF---QANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR------------LFI   59 (323)
T ss_pred             eeEecccc------------chheehhh---ccchhhhcccccceEEEEEeecCccchhhhhhcc------------cee
Confidence            34466888            88999999   3445699999999999999987664332211000            011


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC-eEEEEeCccCce
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQ  247 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~-~i~iwd~~~~~~  247 (497)
                      ...+..+...+...+.   +..+.+|++...       .+...|.-.++++.|.+..  +... ... ..-.|+-+....
T Consensus        60 t~lq~~p~d~l~tqgR---d~~L~lw~ia~s-------~~i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde  127 (323)
T KOG0322|consen   60 TNLQSIPNDSLDTQGR---DPLLILWTIAYS-------AFISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE  127 (323)
T ss_pred             eceeecCCcchhhcCC---CceEEEEEccCc-------ceEEEeeeeccccccccce--eccCCCcchhheecCCcccch
Confidence            1111222222222222   456666666531       1113444444444444321  2222 111 222232221100


Q ss_pred             --------eeEEeecCCCccCCCCCCeEEEEEeCC-CC-cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc
Q 010933          248 --------CFNIVDMKPSNMDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  317 (497)
Q Consensus       248 --------~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  317 (497)
                              ..++ .+.+..-.+..+.+++..+.-+ +. -++++|.++|.+.+||+.++..+......++.       ..
T Consensus       128 ~h~~D~g~~tqv-~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv-------~~  199 (323)
T KOG0322|consen  128 THKQDGGDTTQV-QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV-------ES  199 (323)
T ss_pred             hhhhccCcccee-EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc-------cc
Confidence                    0111 0111111223455666664322 21 35667788999999999987433222122111       12


Q ss_pred             ccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCC-Cce-ee-eeeecccccccccccCCCCCccceeEEEEcCCCC
Q 010933          318 FFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD-STP-VA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  393 (497)
Q Consensus       318 ~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  393 (497)
                      ....|..++.++.+.+.-..=++| -+..+..|+++.. +.+ +. .+......+               ..+.+-||++
T Consensus       200 ~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv---------------~gvrIRpD~K  264 (323)
T KOG0322|consen  200 PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV---------------SGVRIRPDGK  264 (323)
T ss_pred             chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCc---------------cceEEccCCc
Confidence            234577899999998643333333 3467888888642 111 11 111111111               4799999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          394 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       394 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      .+||++.|++|+||+.++...+ ..++.|.+.+++++|+|.  ..     .+|.++.|+. .+|+
T Consensus       265 IlATAGWD~RiRVyswrtl~pL-AVLkyHsagvn~vAfspd--~~-----lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  265 ILATAGWDHRIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPD--CE-----LMAAASKDARISLWK  321 (323)
T ss_pred             EEeecccCCcEEEEEeccCCch-hhhhhhhcceeEEEeCCC--Cc-----hhhhccCCceEEeee
Confidence            9999999999999999999666 899999999999999994  33     4899999999 8883

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=138.09  Aligned_cols=249  Identities=14%  Similarity=0.133  Sum_probs=162.8

Q ss_pred             ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      ..+++.||+            +.|++++|  +.+|.+|++||.|-.+.|||.-..+....                    
T Consensus        42 lE~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~Kllhs--------------------   87 (758)
T KOG1310|consen   42 LEAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHS--------------------   87 (758)
T ss_pred             hhhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeee--------------------
Confidence            356789999            89999999  78999999999999999999875553321                    


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccC
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS  245 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~  245 (497)
                                                              +-.+|...|.++.|-|  +.+.+++| .|..|+++|+...
T Consensus        88 ----------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen   88 ----------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             ----------------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence                                                    1279999999999988  56678888 9999999999842


Q ss_pred             ceeeEE--eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          246 DQCFNI--VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       246 ~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      +..-.-  ......-+..|...|..++..|++++.+.++++||+|+-||+|....+.........       ...+...-
T Consensus       128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~-------l~ny~~~l  200 (758)
T KOG1310|consen  128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI-------LVNYNPQL  200 (758)
T ss_pred             cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH-------HHHhchhh
Confidence            211000  000001256788999999999999999999999999999999985444211100000       00011112


Q ss_pred             ccccEEEEeeCC-CEEEEE-ecCeEEEEecCCCCceeeeeeeccc-------ccccc-----cccCCC--CCccceeEEE
Q 010933          324 ASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEH-------LRPKL-----CDLYNN--DSIFDKFECS  387 (497)
Q Consensus       324 ~~i~~~~~s~~g-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~--~~~~~~~~~~  387 (497)
                      -...++.++|.. .+|++| ++--.++||.+...+....-..+..       .+.-.     |....+  ..+.-.+-+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            356789999966 467776 5688999996431111111000000       01111     111110  1111235689


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933          388 VSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  418 (497)
Q Consensus       388 ~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  418 (497)
                      |+|+|.-|+..-..-.|+++|+..++.....
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            9999987776666668999999987665333

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.9e-14  Score=121.22  Aligned_cols=267  Identities=14%  Similarity=0.134  Sum_probs=166.3

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ..+.-++|++--..+|++..|..|+||+-....                        ...++.-.           ...|
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~------------------------pt~Lks~s-----------Qrnv  143 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC------------------------PTKLKSVS-----------QRNV  143 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCC------------------------Cceecchh-----------hcce
Confidence            467789999966678889999999999976522                        22232222           1569


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      .+++|-|. ....|+.|+.. -|.+|....... .....+..                                      
T Consensus       144 tclawRPl-saselavgCr~-gIciW~~s~tln~~r~~~~~s--------------------------------------  183 (445)
T KOG2139|consen  144 TCLAWRPL-SASELAVGCRA-GICIWSDSRTLNANRNIRMMS--------------------------------------  183 (445)
T ss_pred             eEEEeccC-Ccceeeeeecc-eeEEEEcCccccccccccccc--------------------------------------
Confidence            99999642 23456666665 599997653221 11000000                                      


Q ss_pred             eEEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          192 TKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                 ..+.+.+ -.+| .+|++++|++||..++++  .|..|.|||.+ .+....+.       ...-+.+.-
T Consensus       184 -----------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~-------~~glgg~sl  243 (445)
T KOG2139|consen  184 -----------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI-------PKGLGGFSL  243 (445)
T ss_pred             -----------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-------ccCCCceee
Confidence                       0011111 1455 689999999999999997  89999999999 55554431       133466788


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL  348 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~l  348 (497)
                      +.|+||+ .+|+.++-|+..++|.........   +-.-.              .+.+...+|+|+|++|+.+..+.-++
T Consensus       244 LkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~lg--------------sgrvqtacWspcGsfLLf~~sgsp~l  305 (445)
T KOG2139|consen  244 LKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWILG--------------SGRVQTACWSPCGSFLLFACSGSPRL  305 (445)
T ss_pred             EEEcCCC-CEEEEecccceeeeehhcccceec---ceecc--------------CCceeeeeecCCCCEEEEEEcCCceE
Confidence            9999999 999999999999999655432211   11111              25799999999999998887788888


Q ss_pred             EecCCCCceeeeee-eccccccccccc-------CCCCCccceeEEEEcCCCCEEEEEeCCCc--------EEEEEcCCC
Q 010933          349 WDIRMDSTPVATFK-IHEHLRPKLCDL-------YNNDSIFDKFECSVSGDGLHFATGSYSNL--------LRIFSHGVG  412 (497)
Q Consensus       349 wd~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~l~s~~~dg~--------i~vw~~~~~  412 (497)
                      |.+...++...... +....+..+.++       ...-+.-.+.+++|.|.|.+||+.-..+.        |.+||....
T Consensus       306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            88765443321110 000000000000       00000111258999999999998765443        566766543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.2e-15  Score=132.68  Aligned_cols=202  Identities=15%  Similarity=0.160  Sum_probs=142.1

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      .+++|+.+|..||+|+.||.+|||++...                       ..+.....|.            +.|.++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-----------------------~t~l~e~~~~------------~eV~DL  192 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-----------------------LTILEEIAHH------------AEVKDL  192 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc-----------------------hhhhhhHhhc------------Cccccc
Confidence            78999999999999999999999996543                       3356667777            789999


Q ss_pred             EEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCc---ccccccccccCcce
Q 010933          116 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF---AHGYHLEWTENMAT  192 (497)
Q Consensus       116 ~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  192 (497)
                      .|  +||++.|++.+.| ..+||+++++......+..           ..+...-.+.+..+.   .+...+...+.+.+
T Consensus       193 ~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~-----------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v  258 (398)
T KOG0771|consen  193 DF--SPDGKFLASIGAD-SARVWSVNTGAALARKTPF-----------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGV  258 (398)
T ss_pred             ee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCCc-----------ccchhhhhceecccCCCceEEEEEecCCCCce
Confidence            99  7999999999999 8999999998533322110           001111222222222   22222333344455


Q ss_pred             EEEeecCCccceeee--eeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          193 KIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                      +.|++........++  .. ......|.+++++++|++++.| .||.|-|++.. .-+.++.+      -+.|...|+.+
T Consensus       259 ~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~VT~l  330 (398)
T KOG0771|consen  259 RLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGFVTGL  330 (398)
T ss_pred             eEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheeeeeeE
Confidence            555544322111111  11 1223479999999999999999 99999999988 44455543      56799999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      .|+|+. +.+++.+.|..+.+.-+..
T Consensus       331 tF~Pds-r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  331 TFSPDS-RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEcCCc-CcccccccCCceeEEEEee
Confidence            999998 9999999999998887764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=8.3e-16  Score=137.47  Aligned_cols=309  Identities=12%  Similarity=0.112  Sum_probs=212.0

Q ss_pred             ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933           87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                      +.....|..|.            +.|+.|.|  +..|..++++|.|..|.+||+..+..+..                  
T Consensus       132 ~~l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------------------  179 (559)
T KOG1334|consen  132 LRLQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLS------------------  179 (559)
T ss_pred             hhhhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccc------------------
Confidence            34456677787            88999999  68899999999999999999987763321                  


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCc
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLE  243 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~  243 (497)
                                                                |..+|...|....|-|  +.+.++++ .||.+++=.+.
T Consensus       180 ------------------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  180 ------------------------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             ------------------------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence                                                      2368888888888876  44567777 99999998777


Q ss_pred             cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      ..+....+     ..+..|.++|+.++..|+.+..|.+++.|+.+.-+|++.+.....    +.. ......      ..
T Consensus       218 ~t~~~e~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~----~~c-r~~~~~------~~  281 (559)
T KOG1334|consen  218 ETGYVENT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK----FVC-READEK------ER  281 (559)
T ss_pred             cccceecc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce----eee-eccCCc------cc
Confidence            55544433     236789999999999999989999999999999999998754321    111 000000      01


Q ss_pred             ccccEEEEeeCCC-EEEEE-ecCeEEEEecCCCCceeeeeeeccccccccccc-CCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          324 ASISDIKFANDGQ-HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       324 ~~i~~~~~s~~g~-~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      -....++..|... .+++| .+--+++||.+.-.+.  ...+   .+..+|.. .-.+....|++++|+.++.-|.+.-.
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence            2577888888765 56665 5688999998642111  0000   11111110 00133334689999988777777777


Q ss_pred             CCcEEEEEcCCC------------CcceEEEeccCc--ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcc
Q 010933          401 SNLLRIFSHGVG------------SAGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHE  463 (497)
Q Consensus       401 dg~i~vw~~~~~------------~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~  463 (497)
                      |-.|++++-.-+            ..+...+++|.+  .|..+-|--+ ...+     +++|++-|. -+|  +.++++.
T Consensus       357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEy-----VvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEY-----VVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccce-----EEecCccceEEEEecchhHHHH
Confidence            888999954332            123344778875  4666666543 2333     455555555 888  5556666


Q ss_pred             cccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          464 LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       464 ~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      .+.+....|+||.=||.-++||+++ +-.++||.
T Consensus       431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             HhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence            6666677999999999999999999 66699996

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1e-13  Score=133.19  Aligned_cols=212  Identities=16%  Similarity=0.161  Sum_probs=139.0

Q ss_pred             cceeEEEEEecCCCCEEEEEe---CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+.+.+|  +|||+.|+..+   .+..+.+|++.+++...+.                                     
T Consensus       199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-------------------------------------  239 (429)
T PRK03629        199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-------------------------------------  239 (429)
T ss_pred             CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-------------------------------------
Confidence            66899999  68999988764   3457888888776533221                                     


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                               .....+....|+|||+.|+..  .++  .|++||+. ++....        +..+
T Consensus       240 -------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~--------lt~~  285 (429)
T PRK03629        240 -------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDG  285 (429)
T ss_pred             -------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEE--------ccCC
Confidence                                     112223457899999988864  344  58889988 444433        2333


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCC-Ce--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSR-GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ...+....|+|+| +.|+..+.+ +.  |.++|+.+++.     +.+..             +........|+|||++|+
T Consensus       286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence            4567789999999 877776654 44  44446655432     11111             013356788999999988


Q ss_pred             EEe-c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc---EEEEEcCCC
Q 010933          340 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVG  412 (497)
Q Consensus       340 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~---i~vw~~~~~  412 (497)
                      ... +   ..|.+||+.+ +. ...+......                ....|+|||++|+..+.++.   +.+++++..
T Consensus       347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~~----------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFLD----------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             EEEccCCCceEEEEECCC-CC-eEEeCCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            753 2   4688899875 43 3333321111                25889999999999888764   677777432


Q ss_pred             CcceEEEeccCcceeeeEeec
Q 010933          413 SAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~  433 (497)
                        ....+.+|.+.+...+|+|
T Consensus       409 --~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        409 --FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             --CeEECccCCCCcCCcccCC
Confidence              3366778888888888876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.3e-13  Score=119.50  Aligned_cols=144  Identities=15%  Similarity=0.152  Sum_probs=104.6

Q ss_pred             cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccc
Q 010933          233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  312 (497)
Q Consensus       233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~  312 (497)
                      .-+.+++++.+. +..+..+        .....|.++.++.+   .|+++-.+. |+|||++..+++    +.++..   
T Consensus        66 qpr~Lkv~~~Kk-~~~ICe~--------~fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklL----hTI~t~---  125 (391)
T KOG2110|consen   66 QPRKLKVVHFKK-KTTICEI--------FFPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLL----HTIETT---  125 (391)
T ss_pred             CCceEEEEEccc-CceEEEE--------ecCCceEEEEEccc---eEEEEEccc-EEEEecccceee----hhhhcc---
Confidence            345788888873 3322221        24467899998875   355555444 999999998766    444431   


Q ss_pred             cCCccccccccccccEEEEeeCCCEEEEE--ec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc
Q 010933          313 HGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  389 (497)
Q Consensus       313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  389 (497)
                             ..+...+.++++++.+.|+|.-  .+ |.|.+||+.+ -+++..+..|++.+               -+++|+
T Consensus       126 -------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~l---------------Aalafs  182 (391)
T KOG2110|consen  126 -------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPL---------------AALAFS  182 (391)
T ss_pred             -------CCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCce---------------eEEEEC
Confidence                   1123456777777777799984  23 9999999986 88999999999875               489999


Q ss_pred             CCCCEEEEEeCCCc-EEEEEcCCCCcceEEEe
Q 010933          390 GDGLHFATGSYSNL-LRIFSHGVGSAGGITVE  420 (497)
Q Consensus       390 ~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~  420 (497)
                      ++|.+|||+|+.|+ |||+.+.+|+.+ ..++
T Consensus       183 ~~G~llATASeKGTVIRVf~v~~G~kl-~eFR  213 (391)
T KOG2110|consen  183 PDGTLLATASEKGTVIRVFSVPEGQKL-YEFR  213 (391)
T ss_pred             CCCCEEEEeccCceEEEEEEcCCccEe-eeee
Confidence            99999999999987 799999998554 4443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3.9e-14  Score=115.77  Aligned_cols=244  Identities=10%  Similarity=0.019  Sum_probs=157.4

Q ss_pred             CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEe--ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      .|..-+++|.+++|++| .+|.|.+..+.........-  ..+....++|+.+|+.++|..   .+|++++. |.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEee
Confidence            45566789999999999 99999999876321100000  000013578999999999994   35666654 9999998


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL  371 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~  371 (497)
                      .+.........+.++.......    -......|++|...|.. ..+.+|.|+.++.||+++ ++...++++|..-+   
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~----~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYv---  159 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQV----DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQREYRGHTDYV---  159 (325)
T ss_pred             ehhhhhhccchhhhhhcCcccc----CcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEEEEcCCccee---
Confidence            7764332111122222000000    00112468999999865 556667889999999997 99999999999864   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc----------ceeeeEeecCCCccccc
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN----------ENRKPILQAAPRARRSS  441 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~  441 (497)
                                  .++.--.....+++|++||++++||.++++.+ ..++..+.          .|-+++.    +..+  
T Consensus       160 ------------H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigala~----~edW--  220 (325)
T KOG0649|consen  160 ------------HSVVGRNANGQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGALAV----NEDW--  220 (325)
T ss_pred             ------------eeeeecccCcceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEEec----cCce--
Confidence                        46665444557899999999999999998765 44433222          1222332    2223  


Q ss_pred             ccceeEeeccCceecCCC-CCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEE
Q 010933          442 LSNLTRGLYRQAHENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH  495 (497)
Q Consensus       442 ~~~l~~~~~d~~~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~  495 (497)
                         |++|+.....+|+.. ......+....++..+.|-  .+.+++++ .+.+.-|
T Consensus       221 ---lvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~--~d~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  221 ---LVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFV--DDCVLIGGEGNHVQSY  271 (325)
T ss_pred             ---EEecCCCceeEEeccCCCceEEEecccceeEeeee--cceEEEeccccceeee
Confidence               778877666999433 3445567788899899885  44455555 4334443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=7.9e-14  Score=138.14  Aligned_cols=241  Identities=15%  Similarity=0.203  Sum_probs=160.1

Q ss_pred             CCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccc
Q 010933           84 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  163 (497)
Q Consensus        84 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  163 (497)
                      .|....++.+..|+            ..|..++.+ ++++.+|++||.||+|++|+...-....                
T Consensus      1035 ~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------------- 1085 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG---------------- 1085 (1431)
T ss_pred             CccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc----------------
Confidence            56666777777777            888899886 4667999999999999999986533110                


Q ss_pred             ccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 010933          164 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  242 (497)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~  242 (497)
                                                           ...++..++ ......+.++...+.+..+|.| .||.|.+.++
T Consensus      1086 -------------------------------------~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1086 -------------------------------------GSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred             -------------------------------------ceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence                                                 012233344 3356788899999999999999 9999999998


Q ss_pred             ccC-ceeeEEeecCCCccCCCCCCeEEEEEeCCCCc-EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc
Q 010933          243 EIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  320 (497)
Q Consensus       243 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (497)
                      +.. ....................+..-++...... .++.+..-+.|..||+++...........+             
T Consensus      1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred             cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence            841 11111111111112222233333344433223 788899999999999998654422222222             


Q ss_pred             cccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC---CCEEE
Q 010933          321 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFA  396 (497)
Q Consensus       321 ~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~  396 (497)
                        .+.|++++.+|.+.+++.|+. |.+.+||++. +.++..+......           .   ++.+..+|-   ....+
T Consensus      1195 --hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~-----------~---i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1195 --HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA-----------P---IRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             --ccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccC-----------C---cceEEeeccCCCCceEE
Confidence              278999999999999999966 9999999996 7777776543321           1   245555552   34555


Q ss_pred             EEe--CCCcEEEEEcCCCCcceEEEecc
Q 010933          397 TGS--YSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       397 s~~--~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                      +++  ..+.|.+|++.+|. ....+...
T Consensus      1258 s~~~~~~nevs~wn~~~g~-~~~vl~~s 1284 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGL-RQTVLWAS 1284 (1431)
T ss_pred             EecccCCCceeeeecccCc-ceEEEEcC
Confidence            444  47889999999984 34555544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=4.5e-15  Score=130.77  Aligned_cols=176  Identities=15%  Similarity=0.113  Sum_probs=132.4

Q ss_pred             eEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933          218 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  296 (497)
Q Consensus       218 ~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  296 (497)
                      ..++|+++|..+++| .||++++|+........        ....|...|.++.|+||| ++|++.+.| ..+||+.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence            679999999999999 99999999966233222        256799999999999999 999999999 8999999998


Q ss_pred             cccccccceecccccccCCccccccccccccEEEEeeCC---CEE-EEE-ec-CeEEEEecCCCCc-----eeeeeeecc
Q 010933          297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHL-LSR-DY-MNLKLWDIRMDST-----PVATFKIHE  365 (497)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l-~~~-~~-~~i~lwd~~~~~~-----~~~~~~~~~  365 (497)
                      ..+..... ++.              ...+..+.|+.|+   .+. ++. .. +.|+.||+.....     ..+.+..++
T Consensus       218 ~~~a~~t~-~~k--------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~  282 (398)
T KOG0771|consen  218 AALARKTP-FSK--------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK  282 (398)
T ss_pred             chhhhcCC-ccc--------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence            54422111 111              1346677887766   333 332 33 7888877754111     112222222


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933          366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  434 (497)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (497)
                      .                +.+++.++||+++|.|+.||.|.|++..+.+.....-++|...|+.+.|+|+
T Consensus       283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence            2                2699999999999999999999999999988888888999999999999994

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=5.3e-14  Score=137.25  Aligned_cols=245  Identities=14%  Similarity=0.170  Sum_probs=154.7

Q ss_pred             CCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-eeeEEe---ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933          214 DFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIV---DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  286 (497)
Q Consensus       214 ~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  286 (497)
                      ...|+.+.+-.  |..++++| .||.|+||+--..+ +..+.+   ..-..-+.+..+.=.-+.|.... .+|++++.-.
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVR 1187 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCee
Confidence            44677777732  55677888 99999999744222 222211   00000111112222445677666 6677777789


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe-eCCCEEEEE-ecCeEEEEecCCCCc--eeeeee
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR-DYMNLKLWDIRMDST--PVATFK  362 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~-~~~~i~lwd~~~~~~--~~~~~~  362 (497)
                      .|+|||+.....+    ..+..            +-...++++.-+ +.|+.+++| .||.|++||.+....  .+..++
T Consensus      1188 ~IRIWDa~~E~~~----~diP~------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVV----ADIPY------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred             EEEEEecccceeE----eeccc------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence            9999999875443    22221            012456666544 346889998 679999999986433  567777


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCC-CcceEEEeccC--c-ceeeeEeecCCCc
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG-SAGGITVEAGK--N-ENRKPILQAAPRA  437 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~-~~~~~~~~~~~--~-~v~~~~~~~~~~~  437 (497)
                      .|....          .   |..+.+.+.|- .|++|+.||.|++||++.. ..-...+..|.  + ..+++....  ..
T Consensus      1252 ~h~~~~----------~---Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~--ha 1316 (1387)
T KOG1517|consen 1252 EHNDVE----------P---IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE--HA 1316 (1387)
T ss_pred             ccCCcc----------c---ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc--CC
Confidence            777642          1   14788888654 4999999999999999874 22223344444  3 466777766  44


Q ss_pred             ccccccceeEeeccCc-eecCCC-CCccccc-------ccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          438 RRSSLSNLTRGLYRQA-HENSSS-GHHELSY-------NLSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       438 ~~~~~~~l~~~~~d~~-~iw~~~-~~~~~~~-------~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                      .+     +|+|+. +. +||... +.+....       .-...+.+++|||..-+||+|..|+ +-||.
T Consensus      1317 pi-----iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1317 PI-----IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             Ce-----eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            44     899988 66 999433 3222211       2234678999999999999998555 77775

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=7.5e-14  Score=127.61  Aligned_cols=292  Identities=17%  Similarity=0.219  Sum_probs=192.0

Q ss_pred             CCCcccCCcceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933           25 PDEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  103 (497)
Q Consensus        25 ~~~~~~h~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  103 (497)
                      .+..+.+...-+.|..+|||+|+ |+|...-.|++||+..-.                         ..|.-|..     
T Consensus        44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------------------------LKFERhlD-----   93 (703)
T KOG2321|consen   44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------------------------LKFERHLD-----   93 (703)
T ss_pred             HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce-------------------------eeeeeccc-----
Confidence            34456688899999999999986 778888999999987642                         22344431     


Q ss_pred             cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                            +.+..+... +.|-..++.--.|++|.+....+... ..+               +.-|+-+..+...  +-++
T Consensus        94 ------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~hy~~RI---------------P~~GRDm~y~~~s--cDly  149 (703)
T KOG2321|consen   94 ------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRHYRTRI---------------PKFGRDMKYHKPS--CDLY  149 (703)
T ss_pred             ------ccceeEEEe-ccchhhheEeecCceeeehhhcCeeeeeec---------------CcCCccccccCCC--ccEE
Confidence                  334444333 45555666667788777654332110 011               0111112211111  1111


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                      .++.  +..+.-.+++..   +.+.-| ......++++..++-..+|++| .+|.|..||.+ .+....++++... ...
T Consensus       150 ~~gs--g~evYRlNLEqG---rfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v~s  221 (703)
T KOG2321|consen  150 LVGS--GSEVYRLNLEQG---RFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-VNS  221 (703)
T ss_pred             Eeec--CcceEEEEcccc---cccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-cCC
Confidence            1111  233444444432   333333 4456789999999999999999 89999999999 5555555444321 222


Q ss_pred             C-----CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC--
Q 010933          262 L-----TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--  334 (497)
Q Consensus       262 ~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--  334 (497)
                      |     ...|+++.|+.+| -.+++|+.+|.+.|||++..+.+..     ..|           +..-+|..+.|.+.  
T Consensus       222 ~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~-----kdh-----------~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  222 HPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLV-----KDH-----------GYELPIKKLDWQDTDQ  284 (703)
T ss_pred             CccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceee-----ccc-----------CCccceeeecccccCC
Confidence            3     3459999999999 9999999999999999998765421     111           12357888999775  


Q ss_pred             CCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          335 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       335 g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      +..+++.+...++|||-.+ ++....+......                ..+++-|++-+++++-+++.+..|=+..-
T Consensus       285 q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  285 QNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             CceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcceeEEcccc
Confidence            4567776669999999986 8877777644432                58999999999999999999888877654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=7.3e-14  Score=118.06  Aligned_cols=147  Identities=19%  Similarity=0.260  Sum_probs=103.5

Q ss_pred             EEEeCCCCCEEEEE-c----------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE--eCC
Q 010933          219 SISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SSR  285 (497)
Q Consensus       219 ~~~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~d  285 (497)
                      .+.|+++|+.|+.- .          -+...+|.++..+.....+.     + ...++|.+++|+|+| ..|++.  ..+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l-~~~~~I~~~~WsP~g-~~favi~g~~~   82 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----L-KKEGPIHDVAWSPNG-NEFAVIYGSMP   82 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----c-cCCCceEEEEECcCC-CEEEEEEccCC
Confidence            57899999888763 2          12455555543333333321     1 234579999999999 666544  457


Q ss_pred             CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----cCeEEEEecCCCCceeeee
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~lwd~~~~~~~~~~~  361 (497)
                      +.|.+||++. +.+    ..+..               ..++.+.|+|+|++|++++    .|.|.+||++. .+.+...
T Consensus        83 ~~v~lyd~~~-~~i----~~~~~---------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~  141 (194)
T PF08662_consen   83 AKVTLYDVKG-KKI----FSFGT---------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF  141 (194)
T ss_pred             cccEEEcCcc-cEe----EeecC---------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence            8999999973 222    22322               5678999999999999874    27899999985 6766665


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCcEEEEEcC
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG  410 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~vw~~~  410 (497)
                      .....                 +.++|+|||++|+++..      |+.++||++.
T Consensus       142 ~~~~~-----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  142 EHSDA-----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ccCcE-----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            43321                 58999999999998874      7889999985

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.8e-13  Score=129.38  Aligned_cols=213  Identities=13%  Similarity=0.154  Sum_probs=133.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+.+.+|  +|||+.|+.++.+   ..|.+||+.+++...+                                      
T Consensus       196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l--------------------------------------  235 (427)
T PRK02889        196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVV--------------------------------------  235 (427)
T ss_pred             CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            67889999  6899999887643   4588999887763321                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                              ......+...+|+|||+.|+. . .++...+|.++........       +..+..
T Consensus       236 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~  284 (427)
T PRK02889        236 ------------------------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG  284 (427)
T ss_pred             ------------------------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence                                    112234457899999998875 4 6777666655422222222       334445


Q ss_pred             CeEEEEEeCCCCcEEEEEeC-CCeEEEEEcc--CCcccccccce-ecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          265 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ......|+|+| +.|+..+. ++...+|.+.  +++..    +. +..               .......|+|||++|+.
T Consensus       285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g---------------~~~~~~~~SpDG~~Ia~  344 (427)
T PRK02889        285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTG---------------SYNTSPRISPDGKLLAY  344 (427)
T ss_pred             CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCceE----EEecCC---------------CCcCceEECCCCCEEEE
Confidence            56678899999 77766554 4666666553  33211    11 111               22346789999999987


Q ss_pred             Eec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-c--EEEEEcCCCC
Q 010933          341 RDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-L--LRIFSHGVGS  413 (497)
Q Consensus       341 ~~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~--i~vw~~~~~~  413 (497)
                      .+.    ..|.+||+.. ++.. .+......                ....|+|||++|+..+.++ .  +++.++. + 
T Consensus       345 ~s~~~g~~~I~v~d~~~-g~~~-~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-  404 (427)
T PRK02889        345 ISRVGGAFKLYVQDLAT-GQVT-ALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-  404 (427)
T ss_pred             EEccCCcEEEEEEECCC-CCeE-EccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-
Confidence            542    2699999975 4433 33222111                3689999999988777543 3  5555553 3 


Q ss_pred             cceEEEeccCcceeeeEeec
Q 010933          414 AGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~  433 (497)
                      .....+..+.+.+...+++|
T Consensus       405 ~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        405 RIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             CceEEeecCCCCCCCCccCC
Confidence            34455666666777777766

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=1.5e-13  Score=124.78  Aligned_cols=137  Identities=19%  Similarity=0.263  Sum_probs=100.0

Q ss_pred             CCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCc-------------eeeEEeecC-------CCccCCCCCCeEEEEE
Q 010933          214 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISD-------------QCFNIVDMK-------PSNMDDLTEVITSAEF  271 (497)
Q Consensus       214 ~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~-------------~~~~~~~~~-------~~~~~~~~~~i~~~~~  271 (497)
                      ...|+++.|-|.+. .++++ .+|.+++||.....             ..+.+...+       ...+..-+..|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            36799999988444 44556 89999999764211             111111000       0112223468899999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEe
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD  350 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd  350 (497)
                      +||| ++||+.+.||.+||||+.+.++..    ++..             +-+...|++|||||+||++|. |.-|.||.
T Consensus       299 S~DG-~~LA~VSqDGfLRvF~fdt~eLlg----~mkS-------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  299 SPDG-KYLATVSQDGFLRIFDFDTQELLG----VMKS-------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             cCCC-ceEEEEecCceEEEeeccHHHHHH----HHHh-------------hccceEEEEEcCCccEEEecCCcceEEEEE
Confidence            9999 999999999999999999866542    2221             225699999999999999984 59999999


Q ss_pred             cCCCCceeeeeeecccccc
Q 010933          351 IRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~  369 (497)
                      +.. .+.+.+-.+|..+|.
T Consensus       361 f~e-rRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  361 FEE-RRVVARGQGHKSWVS  378 (636)
T ss_pred             ecc-ceEEEecccccccee
Confidence            985 899999999999873

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.6e-13  Score=129.44  Aligned_cols=214  Identities=12%  Similarity=0.118  Sum_probs=137.6

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCC
Q 010933          212 AHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRG  286 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg  286 (497)
                      .+...+.+.+|+|||+.|+..    .+..|++|++. +++...+        .........++|+|+| +.|+.. +.+|
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~~l--------~~~~~~~~~~~~SPDG-~~La~~~~~~g  265 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQV--------ASFPRHNGAPAFSPDG-SKLAFALSKTG  265 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeEEc--------cCCCCCcCCeEECCCC-CEEEEEEcCCC
Confidence            445678899999999998863    24579999988 4443332        1222334468999999 766654 4454


Q ss_pred             --eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEE--ecCCCCceeee
Q 010933          287 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLW--DIRMDSTPVAT  360 (497)
Q Consensus       287 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lw--d~~~~~~~~~~  360 (497)
                        .|++||+.+++..    +....              ...+....|+|||+.|+..++  +...||  |+.. + ....
T Consensus       266 ~~~I~~~d~~tg~~~----~lt~~--------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g-~~~~  325 (429)
T PRK03629        266 SLNLYVMDLASGQIR----QVTDG--------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-G-APQR  325 (429)
T ss_pred             CcEEEEEECCCCCEE----EccCC--------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-C-CeEE
Confidence              5889999876532    22111              234678999999998877654  444555  5543 3 3334


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  437 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  437 (497)
                      +.......               ....|+|||++|+..+.+   ..|.+||+.++..  ..+... .......|+|  |+
T Consensus       326 lt~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~~-~~~~~p~~Sp--DG  385 (429)
T PRK03629        326 ITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLTDT-FLDETPSIAP--NG  385 (429)
T ss_pred             eecCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEeCCC-CCCCCceECC--CC
Confidence            43222211               368999999999876653   3588899987743  233321 2344677887  77


Q ss_pred             ccccccceeEeeccCc--eec---CCCCCcccccccCCCeEEEEEecC
Q 010933          438 RRSSLSNLTRGLYRQA--HEN---SSSGHHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       438 ~~~~~~~l~~~~~d~~--~iw---~~~~~~~~~~~~~~~i~~l~~~p~  480 (497)
                      +.     ++..+.++.  .++   ..++....+..+...+...+|+|-
T Consensus       386 ~~-----i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        386 TM-----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CE-----EEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            77     777777765  333   334445556667888999999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.2e-12  Score=126.66  Aligned_cols=211  Identities=12%  Similarity=0.033  Sum_probs=134.9

Q ss_pred             cceeEEEEEecCCCCEEEEEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+.+.+|  +|||+.|+..+.   +..|.+||+.+++...+                                      
T Consensus       202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--------------------------------------  241 (435)
T PRK05137        202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV--------------------------------------  241 (435)
T ss_pred             CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence            77999999  689999888763   46899999887663321                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                              ..+...+...+|+|+|+.|+. . .++  .|++||+. ++....        +..+
T Consensus       242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~  288 (435)
T PRK05137        242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS  288 (435)
T ss_pred             ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence                                    233445667899999998865 3 454  47777887 444333        3445


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ........|+|+| +.|+..+. +|  .|+++|+..++..    +....              ...+....|+|+|++|+
T Consensus       289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~--------------~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISFG--------------GGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----EeecC--------------CCcccCeEECCCCCEEE
Confidence            5556778999999 77777664 33  6888887765432    11111              13456788999999998


Q ss_pred             EEec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC------CcEEEEEc
Q 010933          340 SRDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSH  409 (497)
Q Consensus       340 ~~~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~vw~~  409 (497)
                      ....    ..|.+||+.. + ....+..... .               ....|+|||+.|+..+.+      ..|+++++
T Consensus       350 ~~~~~~~~~~i~~~d~~~-~-~~~~lt~~~~-~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDG-S-GERILTSGFL-V---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             EEEcCCCceEEEEEECCC-C-ceEeccCCCC-C---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            7532    3678888753 2 2333321111 1               368999999998765543      25778887


Q ss_pred             CCCCcceEEEeccCcceeeeEeec
Q 010933          410 GVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       410 ~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      ..+..  ..+. ..+.+...+|+|
T Consensus       412 ~g~~~--~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        412 TGRNE--REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCce--EEcc-CCCCccCcccCC
Confidence            65432  3333 233345555554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=1e-11  Score=105.94  Aligned_cols=162  Identities=15%  Similarity=0.228  Sum_probs=114.6

Q ss_pred             CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC-CcEEEEEeC-CCeEEE
Q 010933          213 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSS-RGFVRL  290 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~-dg~i~v  290 (497)
                      -..+|.++.+.++  .|++.-++.|++|.....-+.+..++..    ... ...  ++..|.. ..+||.-+. -|.|+|
T Consensus        93 f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----~NP-kGl--C~~~~~~~k~~LafPg~k~GqvQi  163 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----SNP-KGL--CSLCPTSNKSLLAFPGFKTGQVQI  163 (346)
T ss_pred             eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc----cCC-Cce--EeecCCCCceEEEcCCCccceEEE
Confidence            3568888888765  6777788899999988444444443211    111 112  3334432 144554443 689999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccc
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLR  368 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~  368 (497)
                      -|+...+.-               ....+..|.+.|.|++++-+|..+|+++.  --|||||..+ +.++.+++......
T Consensus       164 ~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A  227 (346)
T KOG2111|consen  164 VDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA  227 (346)
T ss_pred             EEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh
Confidence            999764321               12334668899999999999999999965  4679999997 88888876444322


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                                   ++.+++|||++.+||+.|+.|+++||.+...
T Consensus       228 -------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  228 -------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                         2369999999999999999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.6e-13  Score=129.32  Aligned_cols=212  Identities=15%  Similarity=0.119  Sum_probs=135.2

Q ss_pred             cceeEEEEEecCCCCEEEEEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+.+.+|  +||++.|+.++.   +..|.+|++.+++...+                                      
T Consensus       204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l--------------------------------------  243 (433)
T PRK04922        204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELV--------------------------------------  243 (433)
T ss_pred             CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            66889999  789999998863   34688899877663321                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                              ........+.+|+|+|+.++. . .++  .|++||+. ++....        +..+
T Consensus       244 ------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~  290 (433)
T PRK04922        244 ------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH  290 (433)
T ss_pred             ------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence                                    122233446899999998764 3 444  69999988 444333        3344


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeC-CCe--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      .......+|+|+| +.|+..+. +|.  |.++|+.+++..    + +..             +......++|+|+|++|+
T Consensus       291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~----~-lt~-------------~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE----R-LTF-------------QGNYNARASVSPDGKKIA  351 (433)
T ss_pred             CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----E-eec-------------CCCCccCEEECCCCCEEE
Confidence            4455678999999 77776664 444  666676665421    1 111             012345689999999998


Q ss_pred             EEe-c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCC
Q 010933          340 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG  412 (497)
Q Consensus       340 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~  412 (497)
                      ..+ +   ..|.+||+.. ++.. .+.... ..               ....|+|||++|+..+.+   +.|+++++..+
T Consensus       352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLST-GSVR-TLTPGS-LD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEECCCCceeEEEEECCC-CCeE-ECCCCC-CC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            753 2   3699999975 4433 332211 11               358999999988876653   45777777533


Q ss_pred             CcceEEEeccCcceeeeEeec
Q 010933          413 SAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~  433 (497)
                        ....+..+.+.+..++|+|
T Consensus       414 --~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 --VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             --ceEEcccCCCCCCCCccCC
Confidence              3355555555566666654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.1e-11  Score=113.61  Aligned_cols=332  Identities=11%  Similarity=0.117  Sum_probs=198.3

Q ss_pred             cchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE   92 (497)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (497)
                      +|.....+...+..+...-..+.+..++|++|+++|.+. +..++|++...+..                      .+..
T Consensus        15 l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~----------------------~lt~   71 (566)
T KOG2315|consen   15 LFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV----------------------VLCV   71 (566)
T ss_pred             EeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE----------------------EEEe
Confidence            455544444333333322245578899999999998876 56899999877531                      1111


Q ss_pred             ccccCcccccccccccccceeEEEEEecCCCCEEEEE-----eC-----CccEEEeecCchheeccccCCCCCccccccc
Q 010933           93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  162 (497)
Q Consensus        93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~-----s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  162 (497)
                      +.               ..++++.|  +|.+.+|.+=     ..     ...+++|+++++...........        
T Consensus        72 ~~---------------~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--------  126 (566)
T KOG2315|consen   72 EL---------------KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--------  126 (566)
T ss_pred             cc---------------ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--------
Confidence            11               23788899  6777787762     12     34577999988443222111111        


Q ss_pred             cccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEE------EcC
Q 010933          163 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVS------ADD  234 (497)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~------~~d  234 (497)
                         .+  ....+..+..+.   ....++.+.+++.....  ....   .-|...|..+.++|.+  ..+++      |.-
T Consensus       127 ---~~--W~~qfs~dEsl~---arlv~nev~f~~~~~f~--~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP  193 (566)
T KOG2315|consen  127 ---NG--WVPQFSIDESLA---ARLVSNEVQFYDLGSFK--TIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP  193 (566)
T ss_pred             ---cC--cccccccchhhh---hhhhcceEEEEecCCcc--ceee---eeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence               11  111122222111   11236678888887621  1111   3456788888998863  34444      145


Q ss_pred             CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--C---------CeEEEEEccCCccccccc
Q 010933          235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSA  303 (497)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d---------g~i~v~d~~~~~~~~~~~  303 (497)
                      ..++||.....+ ..+.+..+  ++  ....-..+.|++-|..+|+.++.  |         ..+++.++......    
T Consensus       194 a~vri~~~~~~~-~~~~~a~k--sF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~----  264 (566)
T KOG2315|consen  194 ASVRIYKYPEEG-QHQPVANK--SF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS----  264 (566)
T ss_pred             cEEEEecccccc-ccchhhhc--cc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE----
Confidence            689999876222 22111000  11  12333467788877445544433  3         36778777732211    


Q ss_pred             ceecccccccCCccccccccccccEEEEeeCCCEEEEE-e-c-CeEEEEecCCCCceeeeeeecccccccccccCCCCCc
Q 010933          304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI  380 (497)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (497)
                      -.+..              .++|.++.|+|+|+-+++. + . ..+.|||++  ++++..+.....              
T Consensus       265 V~L~k--------------~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egpR--------------  314 (566)
T KOG2315|consen  265 VPLLK--------------EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGPR--------------  314 (566)
T ss_pred             EecCC--------------CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCCc--------------
Confidence            11111              3799999999999877764 3 3 899999997  777766643322              


Q ss_pred             cceeEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecC
Q 010933          381 FDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENS  457 (497)
Q Consensus       381 ~~~~~~~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~  457 (497)
                         ..+-|+|.|++|+.+|-   -|.+-|||+.+.+.+ ..+.+.                                   
T Consensus       315 ---N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~a~-----------------------------------  355 (566)
T KOG2315|consen  315 ---NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFKAA-----------------------------------  355 (566)
T ss_pred             ---cceEECCCCCEEEEeecCCCCCceEEEeccchhhc-cccccC-----------------------------------
Confidence               47999999999998886   578999999985333 111110                                   


Q ss_pred             CCCCcccccccCCCeEEEEEecCCCEEEEEe-------CCceEEEe
Q 010933          458 SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-------GNSLFFHY  496 (497)
Q Consensus       458 ~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-------~~~~~i~~  496 (497)
                                   .-+-.+|+|||.++.+++       ++++.||+
T Consensus       356 -------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  356 -------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             -------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence                         224579999999998887       67899986

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.3e-13  Score=129.82  Aligned_cols=208  Identities=15%  Similarity=0.197  Sum_probs=131.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      ..+.+.+.+.+|||||+.||..+.+   ..|.+||+.+++.                     ..+..+.           
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---------------------~~l~~~~-----------  239 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---------------------RVVANFK-----------  239 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---------------------EEeecCC-----------
Confidence            3567789999999999999887643   4699999987743                     1122222           


Q ss_pred             cccccceeEEEEEecCCCCEEEE-EeCCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s-~s~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                          +.+...+|  +|||+.|+. .+.++...||.++  ++....+                                  
T Consensus       240 ----g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l----------------------------------  279 (427)
T PRK02889        240 ----GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRL----------------------------------  279 (427)
T ss_pred             ----CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEEC----------------------------------
Confidence                33567899  789988874 5778877777653  2221111                                  


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCcc-CceeeEEeecCCCcc
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQCFNIVDMKPSNM  259 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~-~~~~~~~~~~~~~~~  259 (497)
                                                  ..+........|+|||+.|+..  .++...+|.+.. ++....+      ++
T Consensus       280 ----------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l------t~  325 (427)
T PRK02889        280 ----------------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV------TF  325 (427)
T ss_pred             ----------------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE------ec
Confidence                                        2333445567899999988764  456667776542 2222222      12


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                      .  .......+|+|+| ++|+..+.++   .|.+||+.+++..     .+..              ........|+|||+
T Consensus       326 ~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-----~lt~--------------~~~~~~p~~spdg~  383 (427)
T PRK02889        326 T--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-----ALTD--------------TTRDESPSFAPNGR  383 (427)
T ss_pred             C--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-----EccC--------------CCCccCceECCCCC
Confidence            2  2233467899999 8888776654   6999999877532     2211              01235679999999


Q ss_pred             EEEEEec--C--eEEEEecCCCCceeeeeeeccc
Q 010933          337 HLLSRDY--M--NLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       337 ~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      .|+.+.+  +  .+.+.++  ++.....+..+.+
T Consensus       384 ~l~~~~~~~g~~~l~~~~~--~g~~~~~l~~~~g  415 (427)
T PRK02889        384 YILYATQQGGRSVLAAVSS--DGRIKQRLSVQGG  415 (427)
T ss_pred             EEEEEEecCCCEEEEEEEC--CCCceEEeecCCC
Confidence            9888642  3  3555555  3665666655444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.58  E-value=3.2e-15  Score=141.99  Aligned_cols=281  Identities=17%  Similarity=0.205  Sum_probs=203.2

Q ss_pred             cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933           86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  165 (497)
Q Consensus        86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (497)
                      ..+.++.+.+|-            .+|+|+.|  +..|.++++++.|..++||.++++.+...                 
T Consensus       179 kmk~ikrLlgH~------------naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs-----------------  227 (1113)
T KOG0644|consen  179 KMKNIKRLLGHR------------NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS-----------------  227 (1113)
T ss_pred             HHHHHHHHHhhh------------hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-----------------
Confidence            345566778888            99999999  78899999999999999999888774332                 


Q ss_pred             ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc
Q 010933          166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  244 (497)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  244 (497)
                                                                 . .||.+.|+.++.+.+...++++ .|..|++|.+. 
T Consensus       228 -------------------------------------------~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-  262 (1113)
T KOG0644|consen  228 -------------------------------------------C-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-  262 (1113)
T ss_pred             -------------------------------------------C-CCCccccchhccchhhhhhhhcccCceEEEEecC-
Confidence                                                       2 7999999999999998888888 99999999999 


Q ss_pred             CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc
Q 010933          245 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  324 (497)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (497)
                      .+..+.+       +.+|++.|++++|+|--     +.+.||++++||.+-..      ..+...+...      . ...
T Consensus       263 ~~~pvsv-------LrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp~~~------~-~~~  317 (1113)
T KOG0644|consen  263 DGAPVSV-------LRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRPLKF------T-EKD  317 (1113)
T ss_pred             CCchHHH-------HhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCCCCc------c-ccc
Confidence            6666665       78999999999999952     67889999999998211      1111000000      0 014


Q ss_pred             cccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCC
Q 010933          325 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSN  402 (497)
Q Consensus       325 ~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg  402 (497)
                      .+.++.|..++.-++++++ +.-..|.+..       +..+....           +    -+.++.| ..+.+++-.+-
T Consensus       318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l-----------i----f~t~ssd~~~~~~~ar~~~  375 (1113)
T KOG0644|consen  318 LVDSILFENNGDRFLTGSRDGEARNHEFEQ-------LAWRSNLL-----------I----FVTRSSDLSSIVVTARNDH  375 (1113)
T ss_pred             ceeeeeccccccccccccCCcccccchhhH-------hhhhccce-----------E----EEeccccccccceeeeeee
Confidence            5667777778888888854 7777776542       11222110           0    1111112 24667778889


Q ss_pred             cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC--CCCCcccccccCCCeEEEEEec
Q 010933          403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHP  479 (497)
Q Consensus       403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~--~~~~~~~~~~~~~~i~~l~~~p  479 (497)
                      .+++|++.++..+ +.+.+|..++.-+.+.|- +.++     ..+++.||+ .||.  .+-...........+..-+||+
T Consensus       376 ~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpf-n~ri-----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq  448 (1113)
T KOG0644|consen  376 RLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPF-NPRI-----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ  448 (1113)
T ss_pred             Eeeeeecccchhh-hhhcccccceeeeeecCC-CcHh-----hhhccCCCceEeeecccCCcceeeecccceeeccccCC
Confidence            9999999998554 889999999999999995 6666     788999999 8992  2212222222244566789999


Q ss_pred             CCCEEEEEe-CCceEEEe
Q 010933          480 TTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       480 ~~~~la~~~-~~~~~i~~  496 (497)
                      ||..++... .+.+||+.
T Consensus       449 dgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  449 DGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             CCceEecCCCCCceEEec
Confidence            999998877 45588764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=1.5e-13  Score=117.21  Aligned_cols=308  Identities=13%  Similarity=0.137  Sum_probs=181.5

Q ss_pred             CcceEEEEEcCCCCEEEEe-ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      -+.|.-+.|..|..+++++ ..|+.|.+|++...+                       ....++.-.            +
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-----------------------w~ckIdeg~------------a   92 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-----------------------WYCKIDEGQ------------A   92 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecce-----------------------eEEEeccCC------------C
Confidence            4677889999998877665 577899999997642                       233444444            8


Q ss_pred             ceeEEEEEecCCCCEEEE-EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          111 KINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++.+++|  +|||+.++. ...|-.|.+|.+.+.+...+.-....  + ....+.++|+.+....-.+-.-         
T Consensus        93 gls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~--~-kg~~f~~dg~f~ai~sRrDCkd---------  158 (447)
T KOG4497|consen   93 GLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN--V-KGYAFHPDGQFCAILSRRDCKD---------  158 (447)
T ss_pred             cceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccccC--c-eeEEECCCCceeeeeecccHHH---------
Confidence            8999999  789966554 56899999999988664432211100  0 1122333444433332111100         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                          ...+........++.+ .-.+-..+.+.|+|||..|+.=   -+-.|+.|...                    -.+
T Consensus       159 ----yv~i~~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------------lG~  213 (447)
T KOG4497|consen  159 ----YVQISSCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------------LGL  213 (447)
T ss_pred             ----HHHHHhhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec--------------------cce
Confidence                0000000011122222 3344567789999999887752   23333333322                    346


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc--------------------------------eeccc----c
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR--------------------------------ILRDA----A  310 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------------------------------~~~~~----~  310 (497)
                      ..++|+|.+ ++|++|+.|+.+|+.+--+-+...+..+                                ..+.|    +
T Consensus       214 k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s  292 (447)
T KOG4497|consen  214 KFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES  292 (447)
T ss_pred             eEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence            778999998 9999999999999865433211100000                                00000    0


Q ss_pred             -------cccCC------ccccccccccccEEEEeeCCCEEEEEec---CeEEEEecCCCCceeeeeeeccccccccccc
Q 010933          311 -------ESHGS------KSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  374 (497)
Q Consensus       311 -------~~~~~------~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  374 (497)
                             ..+..      ..-+....-.+.-++|++|..|+++-.|   +.+-+||++. .+....+. ....       
T Consensus       293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLi-Qk~p-------  363 (447)
T KOG4497|consen  293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLI-QKHP-------  363 (447)
T ss_pred             hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhh-hccc-------
Confidence                   00000      0011233456778999999999999755   8999999985 44433332 2222       


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                              |+.+.|+|....|+.+....++++|.......+  -.....-.|.++.+..
T Consensus       364 --------iraf~WdP~~prL~vctg~srLY~W~psg~~~V--~vP~~GF~i~~l~W~~  412 (447)
T KOG4497|consen  364 --------IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV--GVPKKGFNIQKLQWLQ  412 (447)
T ss_pred             --------eeEEEeCCCCceEEEEcCCceEEEEcCCCceEE--ecCCCCceeeeEEecC
Confidence                    268999999988988888889999997653222  2222335667777766

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=5.2e-13  Score=128.97  Aligned_cols=207  Identities=13%  Similarity=0.112  Sum_probs=131.8

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      ..+...+.+.+|+|||+.||..+.+   ..|++||+.+++.                     ..+..+.           
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---------------------~~l~~~~-----------  247 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---------------------ELVASFR-----------  247 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------------------EEeccCC-----------
Confidence            3466789999999999999987743   4699999987643                     1222222           


Q ss_pred             cccccceeEEEEEecCCCCEEEE-EeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s-~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                          +....++|  +|||+.++. .+.++  .|.+||+.+++...+                                  
T Consensus       248 ----g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l----------------------------------  287 (433)
T PRK04922        248 ----GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL----------------------------------  287 (433)
T ss_pred             ----CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC----------------------------------
Confidence                33456789  789987764 45555  588888877653321                                  


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCccCceeeEEeecCCCc
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSN  258 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~  258 (497)
                                                  ..+.......+|+|+|+.|+.+  .++.  |+++++. +++...+      +
T Consensus       288 ----------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~l------t  332 (433)
T PRK04922        288 ----------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERL------T  332 (433)
T ss_pred             ----------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEe------e
Confidence                                        2333344568999999988875  4554  6666665 3333222      1


Q ss_pred             cCCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933          259 MDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  335 (497)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  335 (497)
                      .  +......++|+|+| +.|+..+.++   .|.+||+.+++..     .+..              ........|+|||
T Consensus       333 ~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~--------------~~~~~~p~~spdG  390 (433)
T PRK04922        333 F--QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTP--------------GSLDESPSFAPNG  390 (433)
T ss_pred             c--CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCC--------------CCCCCCceECCCC
Confidence            2  22334568999999 8887765433   6999999876532     2211              0123456899999


Q ss_pred             CEEEEEec----CeEEEEecCCCCceeeeeeeccc
Q 010933          336 QHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       336 ~~l~~~~~----~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      ++++..++    ..|.++++.  +.....+..+.+
T Consensus       391 ~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g  423 (433)
T PRK04922        391 SMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG  423 (433)
T ss_pred             CEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence            98877532    467777774  555566654433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=9e-13  Score=115.24  Aligned_cols=258  Identities=14%  Similarity=0.103  Sum_probs=169.8

Q ss_pred             CCcceEEEEEcCCCC--EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        31 h~~~I~~i~~sp~g~--~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ....|+.++|.-+++  .|...+.|..+..+..+......                 ...-+.......           
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s-----------------~~~~~~~~~l~~-----------  105 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS-----------------SLDDAKTVSLGT-----------  105 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCcccc-----------------cccccccccccc-----------
Confidence            456788888876553  44444456667776665543200                 000011122222           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ++|-.++.   . +..|++|-.+|.+.+|....+.....                                        
T Consensus       106 -~~I~gl~~---~-dg~Litc~~sG~l~~~~~k~~d~hss----------------------------------------  140 (412)
T KOG3881|consen  106 -KSIKGLKL---A-DGTLITCVSSGNLQVRHDKSGDLHSS----------------------------------------  140 (412)
T ss_pred             -ccccchhh---c-CCEEEEEecCCcEEEEeccCCccccc----------------------------------------
Confidence             66777776   2 34788888899999999875542100                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cC--CeEEEEeCccCceeeEEeecCC--CccCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DD--LRINLWNLEISDQCFNIVDMKP--SNMDDL  262 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d--~~i~iwd~~~~~~~~~~~~~~~--~~~~~~  262 (497)
                                      .+..+  .....+..+.-++.-..| ++| ..  ..+.+||++..   .+++..|.  ...-+.
T Consensus       141 ----------------~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~L  199 (412)
T KOG3881|consen  141 ----------------KLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGL  199 (412)
T ss_pred             ----------------cceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccc
Confidence                            00000  112344455555544444 556 66  89999999844   34443331  111112


Q ss_pred             --CCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933          263 --TEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  338 (497)
Q Consensus       263 --~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  338 (497)
                        .-+++++.|-+.  . ..||+++.-+.+|+||.+.++...   ..+..             -..+++++...|+|+++
T Consensus       200 rVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV---~~fd~-------------~E~~is~~~l~p~gn~I  262 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPV---AQFDF-------------LENPISSTGLTPSGNFI  262 (412)
T ss_pred             eeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcce---eEecc-------------ccCcceeeeecCCCcEE
Confidence              245678888876  5 899999999999999999775432   22221             13689999999999999


Q ss_pred             EEEec-CeEEEEecCCCCceeee-eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          339 LSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       339 ~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      ++|.. +.+..||++. ++.+.. +++..+.+               +++..+|..++||++|-|..++|+|+++.+.+
T Consensus       263 y~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  263 YTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             EEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            99976 9999999997 666655 77777654               68999999999999999999999999985443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=8.9e-11  Score=102.52  Aligned_cols=292  Identities=11%  Similarity=0.162  Sum_probs=185.0

Q ss_pred             ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecC--CccccchhhhhhhcccCCCCCCc
Q 010933           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVG--GKNHISRSELEKQMDFTSTSHPE   86 (497)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~   86 (497)
                      ..|.+...-++....+.+.+.+.++-++|+|++++|.++-.+   |.|--|.++.  |+.                   .
T Consensus        19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-------------------t   79 (346)
T COG2706          19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-------------------T   79 (346)
T ss_pred             EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-------------------E
Confidence            357766555677777777888999999999999999888654   6788887765  433                   0


Q ss_pred             ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccc
Q 010933           87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLL  164 (497)
Q Consensus        87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~  164 (497)
                      +.....+.++.              -+.++.  ++++++++++. .-|.|.++.+.. |.+......-.           
T Consensus        80 ~ln~~~~~g~~--------------p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-----------  132 (346)
T COG2706          80 FLNRQTLPGSP--------------PCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-----------  132 (346)
T ss_pred             EeeccccCCCC--------------CeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeee-----------
Confidence            11111222222              367788  78999999986 568999998854 44332211100           


Q ss_pred             cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeC
Q 010933          165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNL  242 (497)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~  242 (497)
                                                     +....    +-.   ......+....+.|+++++++.  .-.+|.+|++
T Consensus       133 -------------------------------h~g~~----p~~---rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706         133 -------------------------------HTGSG----PHE---RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             -------------------------------cCCCC----CCc---cccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence                                           00000    000   1122336678899999999886  6678999999


Q ss_pred             ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933          243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  321 (497)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (497)
                      . .++.....   +..+ ......+.|.|+|++ ++.....+ +++|-+|......-..   ..+..+...+..   |.+
T Consensus       175 ~-dg~L~~~~---~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~---~~lQ~i~tlP~d---F~g  242 (346)
T COG2706         175 D-DGKLTPAD---PAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKF---EELQTIDTLPED---FTG  242 (346)
T ss_pred             c-cCcccccc---cccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceE---EEeeeeccCccc---cCC
Confidence            8 44433221   1123 344566999999999 77666655 9999999988741111   111111111111   111


Q ss_pred             ccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccc-ccccccccCCCCCccceeEEEEcCCCCEEEEE
Q 010933          322 IIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  398 (497)
Q Consensus       322 ~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  398 (497)
                       ..+..++.++|||++|.++.-  ..|-+|.+...+..+........ ...             -+.+.|++++++|+++
T Consensus       243 -~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~-------------PR~F~i~~~g~~Liaa  308 (346)
T COG2706         243 -TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF-------------PRDFNINPSGRFLIAA  308 (346)
T ss_pred             -CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC-------------CccceeCCCCCEEEEE
Confidence             356788999999999999843  79999988765444433322211 110             0589999999999998


Q ss_pred             eCC-CcEEEEEcCCCC
Q 010933          399 SYS-NLLRIFSHGVGS  413 (497)
Q Consensus       399 ~~d-g~i~vw~~~~~~  413 (497)
                      +++ ..|.+|.++...
T Consensus       309 ~q~sd~i~vf~~d~~T  324 (346)
T COG2706         309 NQKSDNITVFERDKET  324 (346)
T ss_pred             ccCCCcEEEEEEcCCC
Confidence            875 579999887543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.8e-12  Score=112.21  Aligned_cols=242  Identities=12%  Similarity=0.147  Sum_probs=148.7

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      ..+..++|++.-..++++ .|..|++||-+. . +...+      -...+..|++++|-|.+...|++|...| |.+|..
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t-~pt~L------ks~sQrnvtclawRPlsaselavgCr~g-IciW~~  169 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKL------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD  169 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-C-CCcee------cchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence            356778999876677777 999999999773 2 22211      1234578999999999877888888776 889976


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceeeee-eeccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATF-KIHEHLRPK  370 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~~~-~~~~~~~~~  370 (497)
                      ..........+.+..   ........++| .+|++|.|.+||..+++++  +..|.|||..+ +..+... .+..+.   
T Consensus       170 s~tln~~r~~~~~s~---~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~---  241 (445)
T KOG2139|consen  170 SRTLNANRNIRMMST---HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGF---  241 (445)
T ss_pred             Ccccccccccccccc---cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCce---
Confidence            542211111111111   11111222344 7899999999999999985  48999999987 4433333 222221   


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc-----ccccce
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR-----SSLSNL  445 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~l  445 (497)
                                   .-+.||||+.+|+++.-|+..++|+....-.. ....-..+.|...+++|  .|++     ++.+.+
T Consensus       242 -------------slLkwSPdgd~lfaAt~davfrlw~e~q~wt~-erw~lgsgrvqtacWsp--cGsfLLf~~sgsp~l  305 (445)
T KOG2139|consen  242 -------------SLLKWSPDGDVLFAATCDAVFRLWQENQSWTK-ERWILGSGRVQTACWSP--CGSFLLFACSGSPRL  305 (445)
T ss_pred             -------------eeEEEcCCCCEEEEecccceeeeehhccccee-cceeccCCceeeeeecC--CCCEEEEEEcCCceE
Confidence                         46999999999999999999999965432121 11122234788888888  5554     011112


Q ss_pred             eEeeccCc-eecC-CCC-----Cccc------cc---ccCCCeEEEEEecCCCEEEEEeC
Q 010933          446 TRGLYRQA-HENS-SSG-----HHEL------SY---NLSSKLLHLAWHPTTNLIACANG  489 (497)
Q Consensus       446 ~~~~~d~~-~iw~-~~~-----~~~~------~~---~~~~~i~~l~~~p~~~~la~~~~  489 (497)
                      .+...++. -+.. ...     .+.+      ..   -.-+.+.+|+|.|.|.+||+.-.
T Consensus       306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            22222222 1111 000     0000      00   12357889999999999998653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=3.9e-13  Score=122.08  Aligned_cols=190  Identities=13%  Similarity=0.044  Sum_probs=132.8

Q ss_pred             CCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc--
Q 010933          223 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--  299 (497)
Q Consensus       223 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--  299 (497)
                      .+.+--++.| .-|.|.+.|... ....+.+..   ...-.+..++++.|-|.++..++++-.+|.+++||....--.  
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            4567778889 899999998762 222221110   111234789999999988788999999999999987421000  


Q ss_pred             -----ccccceeccc----ccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccc
Q 010933          300 -----DHSARILRDA----AESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       300 -----~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~  369 (497)
                           .+.-..|..+    .....+...+.--.+.|+..+|+|||++||+- .||.+||||..+ .+++..++..-+.. 
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL-  335 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL-  335 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence                 0000001100    00001111122234689999999999999996 569999999986 66666666554432 


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                                    ++++|||||+||++|++|-.|.||.+... .+...-++|+..|..++|-|
T Consensus       336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence                          68999999999999999999999999876 45588899999999999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.52  E-value=3.3e-11  Score=112.38  Aligned_cols=319  Identities=12%  Similarity=0.086  Sum_probs=172.2

Q ss_pred             CEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCC
Q 010933           45 DYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG  123 (497)
Q Consensus        45 ~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~  123 (497)
                      +++ ++-..+|.|.+.|..+.+.                       +.++....            +.-..+.|  ++|+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~--s~Dg   48 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKF--SPDG   48 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE---TT-S
T ss_pred             cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEe--cCCC
Confidence            444 4455689999999887643                       55555433            22334567  7999


Q ss_pred             CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933          124 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  203 (497)
Q Consensus       124 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (497)
                      +++++++.|+.|.++|+.+++.....                                                      
T Consensus        49 r~~yv~~rdg~vsviD~~~~~~v~~i------------------------------------------------------   74 (369)
T PF02239_consen   49 RYLYVANRDGTVSVIDLATGKVVATI------------------------------------------------------   74 (369)
T ss_dssp             SEEEEEETTSEEEEEETTSSSEEEEE------------------------------------------------------
T ss_pred             CEEEEEcCCCeEEEEECCcccEEEEE------------------------------------------------------
Confidence            99999999999999999988744321                                                      


Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  281 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  281 (497)
                              .-.....++++++||++++++  ..+.+.++|.+ +.+.++.+.............+.++..+|..+.+++.
T Consensus        75 --------~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~  145 (369)
T PF02239_consen   75 --------KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN  145 (369)
T ss_dssp             --------E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred             --------ecCCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence                    112245689999999999876  79999999998 4555665543322222345677888888888334444


Q ss_pred             EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceee
Q 010933          282 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA  359 (497)
Q Consensus       282 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~  359 (497)
                      .-..+.|.+.|....+...  .+.+..              ........|+|+++|++++.  .+.|-++|.++ ++.+.
T Consensus       146 lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~  208 (369)
T PF02239_consen  146 LKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVA  208 (369)
T ss_dssp             ETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEE
T ss_pred             EccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-ceEEE
Confidence            4556889888877653221  011111              13466789999999988863  38999999986 66665


Q ss_pred             eeeecc----cccccccccCCCCCccceeEEEEc--CCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          360 TFKIHE----HLRPKLCDLYNNDSIFDKFECSVS--GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       360 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      .+....    .....+.++     .   ....|.  ..+...++.-....+.+|+..+.+.+ ..+.....+ .-+..+|
T Consensus       209 ~i~~g~~p~~~~~~~~php-----~---~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv-~~I~~~G~g-lFi~thP  278 (369)
T PF02239_consen  209 LIDTGKKPHPGPGANFPHP-----G---FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV-KTIPTQGGG-LFIKTHP  278 (369)
T ss_dssp             EEE-SSSBEETTEEEEEET-----T---TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE-EEEE-SSSS---EE--T
T ss_pred             EeeccccccccccccccCC-----C---cceEEeeccccceecccccCCccccchhhcCeEE-EEEECCCCc-ceeecCC
Confidence            554321    111000000     0   122232  22333323333345667787776444 666665555 4555566


Q ss_pred             CCCcccccccceeEe---ecc-Cc-eecCCCCCc--ccc-cccCCCeEEEEEecCCCEEEEEe--CC-ceEEEeC
Q 010933          434 APRARRSSLSNLTRG---LYR-QA-HENSSSGHH--ELS-YNLSSKLLHLAWHPTTNLIACAN--GN-SLFFHYA  497 (497)
Q Consensus       434 ~~~~~~~~~~~l~~~---~~d-~~-~iw~~~~~~--~~~-~~~~~~i~~l~~~p~~~~la~~~--~~-~~~i~~~  497 (497)
                        ++++     +...   +.+ +. .++....+.  ... ......+.++.|+++|+.+-++.  .+ .+.||.+
T Consensus       279 --~s~~-----vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  279 --DSRY-----VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             --T-SE-----EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             --CCcc-----EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence              4444     3333   222 22 444222221  111 12234599999999999866555  33 5888753

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.8e-10  Score=100.63  Aligned_cols=169  Identities=15%  Similarity=0.156  Sum_probs=114.1

Q ss_pred             eEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCC----------eEEEEEeCCCCcEEEEEeC-
Q 010933          218 NSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV----------ITSAEFHPIYCNLLAYSSS-  284 (497)
Q Consensus       218 ~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~l~~~~~-  284 (497)
                      ..++++++|++++++  ..|.|.++-++..+.....+.     ...|.+.          ++...+.|++ ++|++..- 
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG  165 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG  165 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeecCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence            678999999999988  789999999975554443322     1223333          8899999999 88887755 


Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeee
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~  362 (497)
                      -.+|.+|++..|.+.......+..              ...-+.|.|+|++++..+-.+  ++|.+|........+..++
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             CceEEEEEcccCccccccccccCC--------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence            357999999987654322111111              256789999999999887654  9999999976334444444


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  412 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~  412 (497)
                      .+...-.   +..+....   -.+..++||++|.++.. ...|-+|.+...
T Consensus       232 ~i~tlP~---dF~g~~~~---aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         232 TIDTLPE---DFTGTNWA---AAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             eeccCcc---ccCCCCce---eEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            3322110   01111111   47899999999988775 457888887754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=2.4e-12  Score=108.83  Aligned_cols=117  Identities=14%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             CCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CC
Q 010933          213 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG  286 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg  286 (497)
                      ..++|.+++|+|+|+.|+.  | .++.|.+||++ ......        +  +...+..+.|+|+| ++|++++.   .|
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G  125 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG  125 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence            3456999999999998765  5 67899999997 333332        2  34667889999999 99998875   46


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-------cCeEEEEecCCCCceee
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA  359 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-------~~~i~lwd~~~~~~~~~  359 (497)
                      .|.+||+++.+.+    ...+.               ..++.++|+|+|++++++.       |+.++||+..  |+.+.
T Consensus       126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~  184 (194)
T PF08662_consen  126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY  184 (194)
T ss_pred             EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence            7999999976544    22222               3478999999999999863       5788999985  66665


Q ss_pred             eee
Q 010933          360 TFK  362 (497)
Q Consensus       360 ~~~  362 (497)
                      ...
T Consensus       185 ~~~  187 (194)
T PF08662_consen  185 KKP  187 (194)
T ss_pred             ecc
Confidence            543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=6.8e-12  Score=121.42  Aligned_cols=214  Identities=12%  Similarity=0.043  Sum_probs=133.2

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE-EEeCC
Q 010933          211 HAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR  285 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d  285 (497)
                      ..|...+.+.+|+|||+.|+..    .+..|++||+. ++....        +..+...+...+|+|+| +.|+ +.+.+
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~~~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~  267 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQREL--------VGNFPGMTFAPRFSPDG-RKVVMSLSQG  267 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcEEE--------eecCCCcccCcEECCCC-CEEEEEEecC
Confidence            4667789999999999988875    24689999998 444333        23445567788999999 6554 55555


Q ss_pred             Ce--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----CeEEEEecCCCCceee
Q 010933          286 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA  359 (497)
Q Consensus       286 g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~lwd~~~~~~~~~  359 (497)
                      +.  |.+||+.+++..     .+..             +........|+|||+.|+..++    ..|+++|+.. + ...
T Consensus       268 g~~~Iy~~d~~~~~~~-----~Lt~-------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~-~~~  327 (435)
T PRK05137        268 GNTDIYTMDLRSGTTT-----RLTD-------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-S-NPR  327 (435)
T ss_pred             CCceEEEEECCCCceE-----EccC-------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-C-CeE
Confidence            54  777788776432     2221             1234567899999999887653    3678888753 3 334


Q ss_pred             eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCC
Q 010933          360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  436 (497)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  436 (497)
                      .+..+....               ....|+|||++|+..+.+   ..|.+|++..+..  ..+.. ...+..+.|+|  +
T Consensus       328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~sp--D  387 (435)
T PRK05137        328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAP--N  387 (435)
T ss_pred             EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECC--C
Confidence            443322211               368899999999876653   3688889865532  22322 23466788888  6


Q ss_pred             cccccccceeEeeccC-----ceec--CC-CCCcccccccCCCeEEEEEecC
Q 010933          437 ARRSSLSNLTRGLYRQ-----AHEN--SS-SGHHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       437 ~~~~~~~~l~~~~~d~-----~~iw--~~-~~~~~~~~~~~~~i~~l~~~p~  480 (497)
                      ++.     ++..+.++     ..+|  .. +.... .......+...+|+|.
T Consensus       388 G~~-----i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        388 GRV-----IMFFRQTPGSGGAPKLYTVDLTGRNER-EVPTPGDASDPAWSPL  433 (435)
T ss_pred             CCE-----EEEEEccCCCCCcceEEEEECCCCceE-EccCCCCccCcccCCC
Confidence            665     55443322     2455  22 22222 2223445677788774

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.4e-12  Score=119.19  Aligned_cols=257  Identities=13%  Similarity=0.187  Sum_probs=171.6

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ......|++|+....|||+|+.||.+++..+.+.........+.        .......-+++.||.            +
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla--------a~snLsmNQtLeGH~------------~   72 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA--------AASNLSMNQTLEGHN------------A   72 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccc--------cccccchhhhhccCc------------c
Confidence            34678999999999999999999999999887654321111111        111334557889999            9


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.-+.|  +.+.+.|-++..+|.|.+|-+..+....-..                                        
T Consensus        73 sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi----------------------------------------  110 (1189)
T KOG2041|consen   73 SVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI----------------------------------------  110 (1189)
T ss_pred             eEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh----------------------------------------
Confidence            9999999  6778889999999999999998876432110                                        


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                         .....+-|.+++|+.+|..++.. .||.|.+=.++ +.+....      .+++  .-...+
T Consensus       111 -------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg--~~l~hv  162 (1189)
T KOG2041|consen  111 -------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKG--QLLAHV  162 (1189)
T ss_pred             -------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcch--heccce
Confidence                               12345678899999999999999 99999888777 4443321      1222  123478


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccc-cccceecccccccCCccccccccccccEEEEe--------eCCCEEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFA--------NDGQHLLS  340 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--------~~g~~l~~  340 (497)
                      .|++|. ..++.+-..|.+.+||....-... +....... .      ..+..-...|..+.|.        |+...|+.
T Consensus       163 ~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-t------g~~s~~~~kia~i~w~~g~~~~v~pdrP~lav  234 (1189)
T KOG2041|consen  163 LWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNG-T------GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV  234 (1189)
T ss_pred             eecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEee-e------eeecCCCccccceeeccCccccCCCCCCEEEE
Confidence            999998 888888899999999976431110 00000000 0      0001001224445553        46677888


Q ss_pred             Eec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          341 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       341 ~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      +-+ |.+.+..-.++..++..-.+..                 +.+..|+++|..||.+|.+.
T Consensus       235 cy~nGr~QiMR~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  235 CYANGRMQIMRSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             EEcCceehhhhhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcc
Confidence            744 8888877665455543333321                 25899999999999999753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.50  E-value=3.8e-12  Score=118.64  Aligned_cols=293  Identities=13%  Similarity=0.097  Sum_probs=157.1

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      ..+.|+|||+++.+.+.||.|.++|+.+.+.                       +.+++.-             .....+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----------------------v~~i~~G-------------~~~~~i   83 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----------------------VATIKVG-------------GNPRGI   83 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------------EEEEE-S-------------SEEEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------------EEEEecC-------------CCcceE
Confidence            4478999999999999999999999988753                       4444433             335778


Q ss_pred             EEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cccccccccCcceE
Q 010933          116 RWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATK  193 (497)
Q Consensus       116 ~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  193 (497)
                      ++  ++||++++++. .++.+.++|.++.+............      ...+.++.....++... ++....-  .+.+.
T Consensus        84 ~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------~~~~~Rv~aIv~s~~~~~fVv~lkd--~~~I~  153 (369)
T PF02239_consen   84 AV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------DGPESRVAAIVASPGRPEFVVNLKD--TGEIW  153 (369)
T ss_dssp             EE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T------TTS---EEEEEE-SSSSEEEEEETT--TTEEE
T ss_pred             EE--cCCCCEEEEEecCCCceeEeccccccceeecccccccc------cccCCCceeEEecCCCCEEEEEEcc--CCeEE
Confidence            88  68999999875 78999999998877655432211100      00111222222222222 2222211  23333


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                      +-|....  ....... ...........|+|++++++.+  .+..|-++|.. .++....++..   -..|..+...+ .
T Consensus       154 vVdy~d~--~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~-~~k~v~~i~~g---~~p~~~~~~~~-p  225 (369)
T PF02239_consen  154 VVDYSDP--KNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK-TGKLVALIDTG---KKPHPGPGANF-P  225 (369)
T ss_dssp             EEETTTS--SCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT-TTEEEEEEE-S---SSBEETTEEEE-E
T ss_pred             EEEeccc--cccceee-ecccccccccccCcccceeeecccccceeEEEeec-cceEEEEeecc---ccccccccccc-c
Confidence            3343332  1121112 2334567789999999988775  78899999998 55555554332   22344443332 2


Q ss_pred             eCCCCcEEE---------EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          272 HPIYCNLLA---------YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       272 ~~~~~~~l~---------~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      +|......+         +.-....+.+||....+.+    +.+..              .+.-..+..+|+++++.+. 
T Consensus       226 hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv----~~I~~--------------~G~glFi~thP~s~~vwvd~  287 (369)
T PF02239_consen  226 HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV----KTIPT--------------QGGGLFIKTHPDSRYVWVDT  287 (369)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE----EEEE---------------SSSS--EE--TT-SEEEEE-
T ss_pred             CCCcceEEeeccccceecccccCCccccchhhcCeEE----EEEEC--------------CCCcceeecCCCCccEEeec
Confidence            332201111         1111223445666555444    33333              1233778889999999987 


Q ss_pred             ---ec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCcc
Q 010933          342 ---DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--NLLRIFSHGVGSAG  415 (497)
Q Consensus       342 ---~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--g~i~vw~~~~~~~~  415 (497)
                         .+ +.|.++|.++ .+.+.++.......              +..+.|++||+++.....+  +.|.+||..+.+.+
T Consensus       288 ~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~--------------~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  288 FLNPDADTVQVIDKKT-LKVVKTITPGPGKR--------------VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             TT-SSHT-EEEEECCG-TEEEE-HHHHHT----------------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             cCCCCCceEEEEECcC-cceeEEEeccCCCc--------------EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence               34 9999999987 56666665333310              1589999999977655543  36999999998554

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=5.3e-10  Score=104.56  Aligned_cols=269  Identities=13%  Similarity=0.149  Sum_probs=159.8

Q ss_pred             CcceEEEEEcCCCCEEEEeec----CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ....+.++++|++++|.+..+    ++.|..|++.....                   ..+.+.......          
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g----------   86 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG----------   86 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS----------
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC----------
Confidence            445577899999999988876    57999999876310                   112222222111          


Q ss_pred             cccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                        ..-..++.  ++++++|+++. .+|.|.++++.. +.+.....                                   
T Consensus        87 --~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-----------------------------------  127 (345)
T PF10282_consen   87 --SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-----------------------------------  127 (345)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-----------------------------------
T ss_pred             --CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeee-----------------------------------
Confidence              33456777  78999999986 689999999976 33322110                                   


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCce-eeEEeecCCCccCCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ-CFNIVDMKPSNMDDL  262 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~  262 (497)
                              ++.....   .+..  .........++.++|+|+++++.  ....|.+|+++.... ......+   .+ ..
T Consensus       128 --------~~~~~g~---g~~~--~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---~~-~~  190 (345)
T PF10282_consen  128 --------TVRHEGS---GPNP--DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---KV-PP  190 (345)
T ss_dssp             --------EEESEEE---ESST--TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE---EC-ST
T ss_pred             --------ecccCCC---CCcc--cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc---cc-cc
Confidence                    0000000   0000  01234567789999999988875  677999999984432 2111100   12 34


Q ss_pred             CCCeEEEEEeCCCCcEEEEE-eCCCeEEEEEcc--CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ....+.++|+|++ +++++. ..++.|.++++.  .+...  ...........      +.+ ......+.++|||++|.
T Consensus       191 G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~~~~~------~~~-~~~~~~i~ispdg~~ly  260 (345)
T PF10282_consen  191 GSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLT--EIQTISTLPEG------FTG-ENAPAEIAISPDGRFLY  260 (345)
T ss_dssp             TSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESCETT------SCS-SSSEEEEEE-TTSSEEE
T ss_pred             CCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCcee--EEEEeeecccc------ccc-cCCceeEEEecCCCEEE
Confidence            4567999999999 655554 558899999998  33211  11111110000      000 12577899999999999


Q ss_pred             EEe--cCeEEEEecCCC-Cce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 010933          340 SRD--YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  410 (497)
Q Consensus       340 ~~~--~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~  410 (497)
                      ++.  .+.|.+|++... +++  +..+..... .              -+.++++|+|++|+++.. ++.|.+|+++
T Consensus       261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~--------------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-F--------------PRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTTEEEEEEEEESSS-S--------------EEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEeccCCEEEEEEEecCCCceEEEEEEeCCCC-C--------------ccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            874  389999999432 332  222322111 0              168999999999998875 6789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=6.2e-12  Score=110.09  Aligned_cols=205  Identities=15%  Similarity=0.153  Sum_probs=143.4

Q ss_pred             EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCE
Q 010933           46 YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM  125 (497)
Q Consensus        46 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~  125 (497)
                      .|++|-.+|.+.+|..+.+...                   -..+..+..+             ..+..|.=++ .....
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~h-------------------ss~l~~la~g-------------~g~~~~r~~~-~~p~I  163 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLH-------------------SSKLIKLATG-------------PGLYDVRQTD-TDPYI  163 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccc-------------------cccceeeecC-------------CceeeeccCC-CCCce
Confidence            5778888999999998865420                   1122333333             3466666642 33345


Q ss_pred             EEEEeCC--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933          126 FILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  203 (497)
Q Consensus       126 l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (497)
                      +++|+..  ..+++||+++.+.+... .+...+                            .+  +-.+.          
T Consensus       164 va~GGke~~n~lkiwdle~~~qiw~a-KNvpnD----------------------------~L--~LrVP----------  202 (412)
T KOG3881|consen  164 VATGGKENINELKIWDLEQSKQIWSA-KNVPND----------------------------RL--GLRVP----------  202 (412)
T ss_pred             EecCchhcccceeeeecccceeeeec-cCCCCc----------------------------cc--cceee----------
Confidence            6668887  89999999877432211 111000                            00  00112          


Q ss_pred             eeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  280 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  280 (497)
                                 -.++++.|.+.  ...|+++ .-+.+++||.+.+.+++..       +.-.+.+++++...|.+ ++++
T Consensus       203 -----------vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~-------fd~~E~~is~~~l~p~g-n~Iy  263 (412)
T KOG3881|consen  203 -----------VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ-------FDFLENPISSTGLTPSG-NFIY  263 (412)
T ss_pred             -----------eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE-------eccccCcceeeeecCCC-cEEE
Confidence                       23456777776  7889999 9999999999977777765       44557899999999999 9999


Q ss_pred             EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933          281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  359 (497)
Q Consensus       281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~  359 (497)
                      +|..-+.+..||++.++....   .             +.+..+.+.++..+|.++++++++ |..+||+|+++ .+++.
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~---~-------------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~  326 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGC---G-------------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLH  326 (412)
T ss_pred             EecccchhheecccCceeecc---c-------------cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhh
Confidence            999999999999999865521   1             223457899999999999999975 69999999987 55554


Q ss_pred             e
Q 010933          360 T  360 (497)
Q Consensus       360 ~  360 (497)
                      .
T Consensus       327 k  327 (412)
T KOG3881|consen  327 K  327 (412)
T ss_pred             h
Confidence            3

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=1.1e-09  Score=102.50  Aligned_cols=175  Identities=13%  Similarity=0.093  Sum_probs=106.7

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecC------CCccCCCCCCeEEEEEeCCCCcEEEEEeC-C
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPIYCNLLAYSSS-R  285 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d  285 (497)
                      .....++++|++++|+++  .+|.|.++++...+........-      +..........+++.++|++ +++++... .
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~  165 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGA  165 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCC
Confidence            345578999999999987  79999999998655444332110      11111234567899999999 76666544 5


Q ss_pred             CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCC-CCce--eee
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRM-DSTP--VAT  360 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~-~~~~--~~~  360 (497)
                      ..|.+|++............+..            .....-+.+.|+|+++++.+..+  +.|.++++.. .+..  ++.
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~  233 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT  233 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence            68999999775421111111111            01245789999999999988754  9999999982 1321  222


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV  411 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~  411 (497)
                      +.......       ...  .....++++|||++|+++.. ++.|.+|+++.
T Consensus       234 ~~~~~~~~-------~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  234 ISTLPEGF-------TGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EESCETTS-------CSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             eeeccccc-------ccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            22111100       000  01257999999999887664 67899999943

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.47  E-value=4.3e-13  Score=119.65  Aligned_cols=272  Identities=13%  Similarity=0.118  Sum_probs=177.2

Q ss_pred             eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeE
Q 010933           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  114 (497)
Q Consensus        35 I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~  114 (497)
                      -+.+.++.+|.+|+.|+..|.|-.+|+.++++                       ..++...             +.|.+
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-----------------------~~Ei~v~-------------Etv~D  175 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-----------------------HFEINVM-------------ETVRD  175 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeeccccee-----------------------eeeeehh-------------hhhhh
Confidence            46889999999999999999999999998754                       2222222             55788


Q ss_pred             EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933          115 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  194 (497)
Q Consensus       115 l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (497)
                      +.|.  .+. .++++.....+.|||-.+-++..+...               ..+....+-+---++++++.  .|.++.
T Consensus       176 v~~L--Hne-q~~AVAQK~y~yvYD~~GtElHClk~~---------------~~v~rLeFLPyHfLL~~~~~--~G~L~Y  235 (545)
T KOG1272|consen  176 VTFL--HNE-QFFAVAQKKYVYVYDNNGTELHCLKRH---------------IRVARLEFLPYHFLLVAASE--AGFLKY  235 (545)
T ss_pred             hhhh--cch-HHHHhhhhceEEEecCCCcEEeehhhc---------------Cchhhhcccchhheeeeccc--CCceEE
Confidence            8885  333 345555667788888765553332211               11222223333333444433  566777


Q ss_pred             EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC
Q 010933          195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP  273 (497)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  273 (497)
                      -|+...   +.+..+ ....+.+..++-+|-+..+-.| .+|+|.+|.........+        +..|.++|.++++.+
T Consensus       236 ~DVS~G---klVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~siAv~~  303 (545)
T KOG1272|consen  236 QDVSTG---KLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVSSIAVDR  303 (545)
T ss_pred             Eeechh---hhhHHH-HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcceEEECC
Confidence            777643   233222 3445677788899999899999 999999999885444444        567999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCC
Q 010933          274 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM  353 (497)
Q Consensus       274 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~  353 (497)
                      +| .+++|.+.|..++|||+|.....    ..+..              ..+...+++|..| +||++....+.||.=..
T Consensus       304 ~G-~YMaTtG~Dr~~kIWDlR~~~ql----~t~~t--------------p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~  363 (545)
T KOG1272|consen  304 GG-RYMATTGLDRKVKIWDLRNFYQL----HTYRT--------------PHPASNLSLSQKG-LLALSYGDHVQIWKDAL  363 (545)
T ss_pred             CC-cEEeecccccceeEeeecccccc----ceeec--------------CCCcccccccccc-ceeeecCCeeeeehhhh
Confidence            99 99999999999999999986533    22111              1356788888655 66666667899995322


Q ss_pred             CC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933          354 DS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  407 (497)
Q Consensus       354 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw  407 (497)
                      .+  ..-..+-.|.-..             .|.++.|.|-...|-.|...|.-.+.
T Consensus       364 ~~s~~~~~pYm~H~~~~-------------~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  364 KGSGHGETPYMNHRCGG-------------PVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             cCCCCCCcchhhhccCc-------------ccccceeccHHHeeeccccCCceeEe
Confidence            22  2222232332211             13588999876666666655544443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.44  E-value=6.9e-11  Score=114.55  Aligned_cols=191  Identities=14%  Similarity=0.137  Sum_probs=121.9

Q ss_pred             cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+.+.+|  +||+++|+.++.+   ..|.+|++.+++...+                                      
T Consensus       190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--------------------------------------  229 (417)
T TIGR02800       190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV--------------------------------------  229 (417)
T ss_pred             CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            55788889  7899999987643   4788999877653321                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cC--CeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                              ..+...+.+++|+|+|+.|+..  .+  ..|++||+. ++....        +..+
T Consensus       230 ------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~--------l~~~  276 (417)
T TIGR02800       230 ------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTR--------LTNG  276 (417)
T ss_pred             ------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEE--------CCCC
Confidence                                    1233345568899999987653  33  368888887 343332        2334


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ........|+|+| +.|+..+. ++  .|.++|+.+++..     .+..             +......+.|+|+|++++
T Consensus       277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR-----RLTF-------------RGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE-----Eeec-------------CCCCccCeEECCCCCEEE
Confidence            4445567899999 77766654 33  5777887765421     1111             113467789999999988


Q ss_pred             EEec-C---eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC---cEEEEEcC
Q 010933          340 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHG  410 (497)
Q Consensus       340 ~~~~-~---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~vw~~~  410 (497)
                      .+.. +   .|.+||+.. +. ...+......                ....|+||+++|+..+.++   .+++.+..
T Consensus       338 ~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDG-GG-ERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEEccCCceEEEEEeCCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            8643 3   788888874 32 2333222111                2578999999988777654   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=7.4e-11  Score=113.96  Aligned_cols=167  Identities=15%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             eEEEeCCCCCEEEEE--cCCe--EEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CC--eEEE
Q 010933          218 NSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRL  290 (497)
Q Consensus       218 ~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v  290 (497)
                      ...+|+|||+.|+..  .++.  |+++|+. +++...        +..+.......+|+|+| +.|+..+. ++  .|.+
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~  334 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYR  334 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence            357899999988763  5664  7777877 343332        33344556778999999 76666554 34  4666


Q ss_pred             EEccCCcccccccce-ecccccccCCccccccccccccEEEEeeCCCEEEEEec--C--eEEEEecCCCCceeeeeeecc
Q 010933          291 VDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHE  365 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~  365 (497)
                      +|+.+++..    +. +..               ......+|+|||++|+..+.  +  .|.++|+.. ++. ..+....
T Consensus       335 ~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~~-~~lt~~~  393 (448)
T PRK04792        335 VNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GAM-QVLTSTR  393 (448)
T ss_pred             EECCCCCEE----EEecCC---------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CCe-EEccCCC
Confidence            677666432    11 111               22345689999999887532  4  455667764 332 3332211


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCc--EEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      ..                ....|+|||+.|+..+. ++.  +++++.+ + .....+..+.+.+...+|+|
T Consensus       394 ~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        394 LD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence            11                24689999998876554 343  6777764 3 23355655555666666665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.1e-10  Score=113.28  Aligned_cols=212  Identities=15%  Similarity=0.138  Sum_probs=130.9

Q ss_pred             cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+...+|  +|||+.|+..+.+   ..|.+|++.+++...+                                      
T Consensus       199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l--------------------------------------  238 (430)
T PRK00178        199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI--------------------------------------  238 (430)
T ss_pred             CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--------------------------------------
Confidence            66889999  7899999887633   3688888877664332                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                              ......+....|+|+|+.|+..  .++  .|++||+. ++....        +..+
T Consensus       239 ------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~  285 (430)
T PRK00178        239 ------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSR--------VTNH  285 (430)
T ss_pred             ------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEE--------cccC
Confidence                                    1112234468899999988753  444  68888988 443332        3334


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ........|+|+| +.|+..+. ++  .|.++|+.+++..    +....              ........|+|+|++|+
T Consensus       286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLV  346 (430)
T ss_pred             CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EeecC--------------CCCccceEECCCCCEEE
Confidence            4455678899999 76666554 33  5777787766432    11111              01234578999999988


Q ss_pred             EEec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-C--cEEEEEcCCC
Q 010933          340 SRDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVG  412 (497)
Q Consensus       340 ~~~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g--~i~vw~~~~~  412 (497)
                      ....    ..|.+||+.+ ++. ..+......                ....|+|||++|+..+.+ |  .|+++++...
T Consensus       347 ~~~~~~~~~~l~~~dl~t-g~~-~~lt~~~~~----------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQR-GSV-RILTDTSLD----------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEEccCCceEEEEEECCC-CCE-EEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            7532    3688889875 433 333211111                247899999998876653 3  4666676432


Q ss_pred             CcceEEEeccCcceeeeEeec
Q 010933          413 SAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~  433 (497)
                        ....+..+.+.+...+|+|
T Consensus       409 --~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        409 --VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             --ceEECcCCCCCcCCCccCC
Confidence              2244555555566666665

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=8.3e-11  Score=108.09  Aligned_cols=287  Identities=15%  Similarity=0.162  Sum_probs=185.4

Q ss_pred             ccccccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc
Q 010933          101 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  179 (497)
Q Consensus       101 ~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (497)
                      ..++.+++...-+.|..  +|||+|+++.| .--.|++||+.+-.++-                                
T Consensus        43 eLiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKF--------------------------------   88 (703)
T KOG2321|consen   43 ELIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKF--------------------------------   88 (703)
T ss_pred             HHHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeee--------------------------------
Confidence            34556666688889998  79999987654 77899999997654321                                


Q ss_pred             cccccccccCcceEEEeecCCccceeeeeeccCC-CCC-eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933          180 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAH-DFN-INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  256 (497)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  256 (497)
                                                     ..| ... |.-.-.+.|-..++.= .|.+|.+-..-  +....+ .   
T Consensus        89 -------------------------------ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~-R---  131 (703)
T KOG2321|consen   89 -------------------------------ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRT-R---  131 (703)
T ss_pred             -------------------------------eecccccceeEEEeccchhhheEeecCceeeehhhc--Ceeeee-e---
Confidence                                           122 122 2222234444444443 67776654322  322221 0   


Q ss_pred             CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                        .+   ..-..++++.-. --|+.++....|+-+++..|+.+    ..+..             ..+.++++..++-..
T Consensus       132 --IP---~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hg  188 (703)
T KOG2321|consen  132 --IP---KFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHG  188 (703)
T ss_pred             --cC---cCCccccccCCC-ccEEEeecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccc
Confidence              11   122456666544 33555555667888999999766    44443             126799999999999


Q ss_pred             EEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          337 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       337 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      +|++|+ +|.|.+||.+. ...+.++..... +...  .+ .+..-.++++.|+.+|-.+++|+.+|.+.|||+++.+.+
T Consensus       189 Lla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~-v~s~--pg-~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  189 LLACGTEDGVVEFWDPRD-KSRVGTLDAASS-VNSH--PG-GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             eEEecccCceEEEecchh-hhhheeeecccc-cCCC--cc-ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence            999997 59999999986 555555544333 1110  11 111122479999999999999999999999999998776


Q ss_pred             eEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec-CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933          416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  491 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~  491 (497)
                      ...=.+..-||..+.|.+. +.+-    .+++....-.+|| ...+........+..++.+.+-|++.++.+|-++.
T Consensus       264 ~~kdh~~e~pi~~l~~~~~-~~q~----~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  264 LVKDHGYELPIKKLDWQDT-DQQN----KVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             eecccCCccceeeeccccc-CCCc----eEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence            5555555678888888775 2222    2444333223999 33334455566677899999999999998887654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.7e-11  Score=116.03  Aligned_cols=206  Identities=15%  Similarity=0.142  Sum_probs=124.4

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .+...+.+..|||||++|+..+.+   ..|++||+.+++.                     +.+..+.++          
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---------------------~~lt~~~g~----------  263 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---------------------EKVTSFPGI----------  263 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---------------------EEecCCCCC----------
Confidence            456688899999999999877543   2688889877643                     223333322          


Q ss_pred             ccccceeEEEEEecCCCCEEEEE-eCCcc--EEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILS-TNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~-s~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                           ....+|  +|||+.|+.. +.++.  |.++|+.+++...+                                   
T Consensus       264 -----~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l-----------------------------------  301 (448)
T PRK04792        264 -----NGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI-----------------------------------  301 (448)
T ss_pred             -----cCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-----------------------------------
Confidence                 346789  7899988764 55665  56667666553321                                   


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCcc
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                                 ..+.......+|+|||+.|+..  .++  .|+++|+. +++...+      +.
T Consensus       302 ---------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~L------t~  347 (448)
T PRK04792        302 ---------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRL------TF  347 (448)
T ss_pred             ---------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEE------ec
Confidence                                       2233345667899999988764  444  46666666 3333322      12


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                      .+  ......+|+|+| +.|+..+. ++  .|.++|+.+++..     .+...              .......|+|||+
T Consensus       348 ~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-----~lt~~--------------~~d~~ps~spdG~  405 (448)
T PRK04792        348 EG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-----VLTST--------------RLDESPSVAPNGT  405 (448)
T ss_pred             CC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-----EccCC--------------CCCCCceECCCCC
Confidence            22  223456899999 77766655 34  4566787776431     11110              1112347999999


Q ss_pred             EEEEEe--cC--eEEEEecCCCCceeeeeeeccc
Q 010933          337 HLLSRD--YM--NLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       337 ~l~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      .|+...  ++  .+++++..  +.....+..+.+
T Consensus       406 ~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g  437 (448)
T PRK04792        406 MVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG  437 (448)
T ss_pred             EEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence            887753  23  46777763  666666655433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=7.3e-11  Score=114.46  Aligned_cols=205  Identities=16%  Similarity=0.181  Sum_probs=126.5

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      ..+.+.+...+|||||++||..+.+   ..|.+|++.+++.                     +.+..+.           
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---------------------~~l~~~~-----------  242 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---------------------EQITNFE-----------  242 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---------------------EEccCCC-----------
Confidence            3567788999999999999877643   3689999987743                     2222222           


Q ss_pred             cccccceeEEEEEecCCCCEEEE-EeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s-~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                          +.+...+|  +|||+.|+. .+.++  .|.+||+.++....+                                  
T Consensus       243 ----g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l----------------------------------  282 (430)
T PRK00178        243 ----GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV----------------------------------  282 (430)
T ss_pred             ----CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc----------------------------------
Confidence                22446789  689988875 44444  577778776653321                                  


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCc
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSN  258 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~  258 (497)
                                                  ..+........|+|+|+.|+..  .++  .|+++++. +++...+.      
T Consensus       283 ----------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt------  327 (430)
T PRK00178        283 ----------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT------  327 (430)
T ss_pred             ----------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee------
Confidence                                        2223344567899999988764  343  57777776 34333221      


Q ss_pred             cCCCCCCeEEEEEeCCCCcEEEEEeCC-C--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933          259 MDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  335 (497)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  335 (497)
                      ..+  .......|+|+| +.|+..+.+ +  .|.++|+.+++.     +.+.. .             .......|+|||
T Consensus       328 ~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~-~-------------~~~~~p~~spdg  385 (430)
T PRK00178        328 FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD-T-------------SLDESPSVAPNG  385 (430)
T ss_pred             cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC-C-------------CCCCCceECCCC
Confidence            111  223457899999 777776653 3  588899887653     22211 0             112245899999


Q ss_pred             CEEEEEec----CeEEEEecCCCCceeeeeeec
Q 010933          336 QHLLSRDY----MNLKLWDIRMDSTPVATFKIH  364 (497)
Q Consensus       336 ~~l~~~~~----~~i~lwd~~~~~~~~~~~~~~  364 (497)
                      +.++....    ..+.++++.  +.....+..+
T Consensus       386 ~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~  416 (430)
T PRK00178        386 TMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA  416 (430)
T ss_pred             CEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence            99887532    346666664  4544455443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=8.4e-11  Score=113.96  Aligned_cols=203  Identities=15%  Similarity=0.175  Sum_probs=129.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .+...+...+|+|||++||.++.+   ..|++||+.+++.                     .   .+..+.         
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------------~---~~~~~~---------  233 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------------E---KVASFP---------  233 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------------E---EeecCC---------
Confidence            455678899999999999987654   4799999987642                     1   122233         


Q ss_pred             ccccceeEEEEEecCCCCEEEEE-eCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~-s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                         +.+.+++|  +||++.|+.. +.++  .|.+|++.++....+                                   
T Consensus       234 ---~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-----------------------------------  273 (417)
T TIGR02800       234 ---GMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-----------------------------------  273 (417)
T ss_pred             ---CCccceEE--CCCCCEEEEEECCCCCccEEEEECCCCCEEEC-----------------------------------
Confidence               44567889  6888877654 4444  577778776553321                                   


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCcc
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                                 ..+........|+|+|+.|+..  .++  .|+++|+. +++...        +
T Consensus       274 ---------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~--------l  317 (417)
T TIGR02800       274 ---------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEVRR--------L  317 (417)
T ss_pred             ---------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCEEE--------e
Confidence                                       1222333456899999988764  333  57777776 333322        2


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                      ..+......+.|+|+| ++++.++.++   .|.+||+.++..     +.+..              ........|+|+|+
T Consensus       318 ~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~--------------~~~~~~p~~spdg~  377 (417)
T TIGR02800       318 TFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTD--------------TGLDESPSFAPNGR  377 (417)
T ss_pred             ecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccC--------------CCCCCCceECCCCC
Confidence            2334556788999999 8888887765   788999887532     22221              01234568999999


Q ss_pred             EEEEEec----CeEEEEecCCCCceeeeeee
Q 010933          337 HLLSRDY----MNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       337 ~l~~~~~----~~i~lwd~~~~~~~~~~~~~  363 (497)
                      +|+....    ..+++.+..  ++....+..
T Consensus       378 ~l~~~~~~~~~~~l~~~~~~--g~~~~~~~~  406 (417)
T TIGR02800       378 MILYATTRGGRGVLGLVSTD--GRFRARLPL  406 (417)
T ss_pred             EEEEEEeCCCcEEEEEEECC--CceeeECCC
Confidence            8887632    345666643  555555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=3e-10  Score=103.10  Aligned_cols=294  Identities=11%  Similarity=0.125  Sum_probs=167.5

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .-++..+.+||.|.+|++.... .|.+|......                       .+..+..              ..
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-----------------------~l~~~~~--------------~~   73 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-----------------------KLVRFRH--------------PD   73 (561)
T ss_pred             CcchhheeecCcchheehhhcc-ceEEccccchh-----------------------heeeeec--------------CC
Confidence            4588999999999999987765 49999865532                       1333332              33


Q ss_pred             eeEEEEEecCCCCEEEEEeCC---------------ccEEEeecCchheeccccCCCCCcc-ccccccccccC-------
Q 010933          112 INRVRWCAAPNGSMFILSTND---------------KTIKLWKVRDQKVKKIKEMDHFPFV-SSENTLLAEKN-------  168 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d---------------~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------  168 (497)
                      |..+.|  +|++.+|.+=+..               +.+.+||..++.+.........+.+ ..+..+.-+..       
T Consensus        74 V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          74 VKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             ceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            888888  6888898885533               3599999999876654433322210 00110100000       


Q ss_pred             -ccccCC-CCCcc-----cc-cccc----cc---cCcceEEEeecCCccceeeeeeccCCCCCe----------eEEEeC
Q 010933          169 -FMNEHN-PPSFA-----HG-YHLE----WT---ENMATKIANVGNSVHARCQKVYPHAHDFNI----------NSISNN  223 (497)
Q Consensus       169 -~~~~~~-~~~~~-----~~-~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----------~~~~~~  223 (497)
                       -+..+. ..+..     .+ +.+.    +.   ....+..|..+.......++++--.....+          ..+.|+
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~  231 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ  231 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence             000000 00000     00 0000    00   111245555544332222222101111110          135566


Q ss_pred             CCCCEEEEE------------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe--CCCeEE
Q 010933          224 SDCETFVSA------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVR  289 (497)
Q Consensus       224 ~~~~~l~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~  289 (497)
                      +.|+.++.=            .+..++|++++  ++.+.+       .....++|+..+|.|.+ +.+++.+  .+-.+.
T Consensus       232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s  301 (561)
T COG5354         232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYMPASVS  301 (561)
T ss_pred             cCCceEEEEEEEeeecccceeccceEEEEeec--ccccce-------eccccccceeeeecccC-CceeEEeccccccee
Confidence            666655430            12345555555  222221       12557899999999998 6665554  588899


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c--CeEEEEecCCCCceeeeeeecc
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHE  365 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~  365 (497)
                      ++|++.. +.    ..+..               ..-+.+.|+|.+++++.++  .  |.+-+||.....+++..+.+..
T Consensus       302 ~~~lr~N-l~----~~~Pe---------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n  361 (561)
T COG5354         302 VFDLRGN-LR----FYFPE---------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN  361 (561)
T ss_pred             ecccccc-eE----EecCC---------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC
Confidence            9999875 22    22222               4457788999999988853  2  9999999875344454565554


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 010933          366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVG  412 (497)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~vw~~~~~  412 (497)
                      .                 .-+.|+||++++.+...      |..|.|||+...
T Consensus       362 ~-----------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         362 T-----------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             c-----------------eEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            3                 34789999999886653      888999998754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.37  E-value=2.7e-10  Score=97.40  Aligned_cols=233  Identities=12%  Similarity=0.086  Sum_probs=154.6

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC------CeEE
Q 010933          216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVR  289 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~  289 (497)
                      ...+++|+.|...++.|.|.-.+||+.+.-++....      ......-.+..+-|-.+  .+.++|+.+      ..+-
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r------~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkvi   78 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASR------QFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVI   78 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhh------ccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEE
Confidence            445699999999999997777899998832211110      01111122333334332  233344332      5799


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccc
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~  369 (497)
                      |||=...+.+    ..+.-              ..+|.++.+.+  ..|++.-.+.|+||....+-+.+..+.....+..
T Consensus        79 IWDD~k~~~i----~el~f--------------~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG  138 (346)
T KOG2111|consen   79 IWDDLKERCI----IELSF--------------NSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG  138 (346)
T ss_pred             EEecccCcEE----EEEEe--------------ccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCc
Confidence            9994433322    22222              35789999875  4677777799999999865677777766554321


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc-ceEEEeccCcceeeeEeecCCCcccccccceeE
Q 010933          370 KLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNLTR  447 (497)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  447 (497)
                       +|            +++=..+..+||.-| .-|.|.|-|+...+. ....+.+|.+.|.+++...  +|..     +|+
T Consensus       139 -lC------------~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~--~Gt~-----vAT  198 (346)
T KOG2111|consen  139 -LC------------SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL--QGTL-----VAT  198 (346)
T ss_pred             -eE------------eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC--CccE-----EEE
Confidence             11            232223445666544 469999999987655 3588999999999999988  6665     999


Q ss_pred             eeccCc--eec--CCCCCcccccc--cCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          448 GLYRQA--HEN--SSSGHHELSYN--LSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       448 ~~~d~~--~iw--~~~~~~~~~~~--~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                      ++..|.  +||  ..++.+.++..  -...|.+|+|||+..+||++++.+ +.||.
T Consensus       199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            999999  999  44455555443  235899999999999999999655 88886

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=3e-10  Score=104.30  Aligned_cols=190  Identities=14%  Similarity=0.096  Sum_probs=125.4

Q ss_pred             cceEEEeecCC--ccceeeeeeccCCCCCeeEEEeCCCCCEEEE---E-cC---------CeEEEEeCccCceeeEEeec
Q 010933          190 MATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVS---A-DD---------LRINLWNLEISDQCFNIVDM  254 (497)
Q Consensus       190 ~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~---~-~d---------~~i~iwd~~~~~~~~~~~~~  254 (497)
                      ..+++|.....  ......+.|+..   .=-.+.|++.|+-|+.   . -|         .++++.+++ +..+.-.   
T Consensus       194 a~vri~~~~~~~~~~~~a~ksFFka---dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~---  266 (566)
T KOG2315|consen  194 ASVRIYKYPEEGQHQPVANKSFFKA---DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVP---  266 (566)
T ss_pred             cEEEEeccccccccchhhhcccccc---ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEe---
Confidence            36788877622  222223344222   2235788887764432   2 23         367777777 3332211   


Q ss_pred             CCCccCCCCCCeEEEEEeCCCCcEEEE--EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933          255 KPSNMDDLTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  332 (497)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  332 (497)
                           ..-.++|+++.|+|++ ..|++  |-.--.+.|||++-.- +    ..+..               ++-+++-|+
T Consensus       267 -----L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-v----~df~e---------------gpRN~~~fn  320 (566)
T KOG2315|consen  267 -----LLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-V----FDFPE---------------GPRNTAFFN  320 (566)
T ss_pred             -----cCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-e----EeCCC---------------CCccceEEC
Confidence                 1247899999999999 65554  3457889999998542 1    22222               678999999


Q ss_pred             eCCCEEEEEe--c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CC
Q 010933          333 NDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SN  402 (497)
Q Consensus       333 ~~g~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg  402 (497)
                      |.|++|+.++  .  |.|-+||+.+ .+++..+.....                 +-+.|+|||++++|++.      |+
T Consensus       321 p~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~eW~PdGe~flTATTaPRlrvdN  382 (566)
T KOG2315|consen  321 PHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFEWSPDGEYFLTATTAPRLRVDN  382 (566)
T ss_pred             CCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCc-----------------eEEEEcCCCcEEEEEeccccEEecC
Confidence            9999988753  3  9999999987 888888877665                 35999999999998885      78


Q ss_pred             cEEEEEcCCCCcceEEEeccCc-ceeeeEeecC
Q 010933          403 LLRIFSHGVGSAGGITVEAGKN-ENRKPILQAA  434 (497)
Q Consensus       403 ~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~~~  434 (497)
                      .++||+.... .+   .+.+.. +...+.+.|.
T Consensus       383 g~KiwhytG~-~l---~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  383 GIKIWHYTGS-LL---HEKMFKSELLQVEWRPF  411 (566)
T ss_pred             CeEEEEecCc-ee---ehhhhhHhHhheeeeec
Confidence            8999998643 22   122222 4566666654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=4.6e-11  Score=117.27  Aligned_cols=147  Identities=12%  Similarity=0.104  Sum_probs=119.8

Q ss_pred             eCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccc
Q 010933          222 NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  300 (497)
Q Consensus       222 ~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  300 (497)
                      ++++.-++++| .-+.|.+|+....+...        .+.+|++.|.++.++.+| .++++.|+|+.+|+|++.+.+...
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC
Confidence            45666678888 89999999987333333        378999999999999999 999999999999999999876441


Q ss_pred             cccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCC
Q 010933          301 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS  379 (497)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (497)
                             .         ..-+|...+..+.|.|+  .++++ .|-+.++|+..  +..+..+..|...            
T Consensus       212 -------~---------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~------------  259 (967)
T KOG0974|consen  212 -------C---------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK------------  259 (967)
T ss_pred             -------c---------ccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc------------
Confidence                   1         12357789999999998  56665 66999999875  7777788888764            


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          380 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       380 ~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                        .++.++.+++...++|++.|+.+++|++..
T Consensus       260 --~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  260 --GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             --ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence              237899999999999999999999999865

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5.8e-10  Score=106.89  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=73.0

Q ss_pred             CeeEEEeCCCCCEEEEE--cCCeEEEEe--CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC---CeE
Q 010933          216 NINSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFV  288 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i  288 (497)
                      .....+|+|||+.|+..  .++...+|.  +...+.....       +..+...+....|+|+| +.|+..+.+   ..|
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I  353 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQI  353 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEE
Confidence            34567999999988764  566555554  4311221221       23344566788999999 877766543   479


Q ss_pred             EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e---cCeEEEEecCCCCce
Q 010933          289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---YMNLKLWDIRMDSTP  357 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---~~~i~lwd~~~~~~~  357 (497)
                      .+||+.+++..     .+..             ....+....|+|||+.|+.. .   ...|.++|+.. ++.
T Consensus       354 ~v~dl~~g~~~-----~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~  407 (428)
T PRK01029        354 CVYDLATGRDY-----QLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKT  407 (428)
T ss_pred             EEEECCCCCeE-----EccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE
Confidence            99999887542     2211             01245678999999988753 2   26788889874 443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.32  E-value=3.5e-10  Score=97.69  Aligned_cols=203  Identities=10%  Similarity=0.192  Sum_probs=139.6

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ..++++++++++...|++|-..|++.-+.+...-.                   ...+.+....|.            .+
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~------------~~  116 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ------------AR  116 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh------------cc
Confidence            57889999999999999999999999887654211                   224455667788            88


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC--
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN--  189 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  189 (497)
                      |..+-|  +...+.+++.+.|..+.--..+.+....                    ............+.+...++++  
T Consensus       117 v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~~lg--------------------~Y~~~~~~t~~~~d~~~~fvGd~~  174 (404)
T KOG1409|consen  117 VSAIVF--SLTHEWVLSTGKDKQFAWHCTESGNRLG--------------------GYNFETPASALQFDALYAFVGDHS  174 (404)
T ss_pred             eeeEEe--cCCceeEEEeccccceEEEeeccCCccc--------------------ceEeeccCCCCceeeEEEEecccc
Confidence            999999  4566799999999887755555544221                    1111111111111111222111  


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                      +.+..-.+... ...++.++ .+|...+.+++|.+....+.+| .|..+.+||+- ..+-...      .+.+|...|..
T Consensus       175 gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~~kV~~  245 (404)
T KOG1409|consen  175 GQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHNDKVQA  245 (404)
T ss_pred             cceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccchhhhhh
Confidence            12222222211 11233444 8999999999999999999999 99999999998 4444433      37899999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSA  297 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  297 (497)
                      +...+.- ..+.+++.||.|-+||++..+
T Consensus       246 l~~~~~t-~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  246 LSYAQHT-RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhh-eeeeeccCCCeEEEEecccee
Confidence            9988887 899999999999999997643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2.6e-09  Score=102.44  Aligned_cols=173  Identities=15%  Similarity=0.102  Sum_probs=101.3

Q ss_pred             eeEEEeCCCCCEEEEE--cCC----eEEEEeCccC--ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCe
Q 010933          217 INSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF  287 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~  287 (497)
                      ....+|+|||+.|+..  .+|    .+.+|++...  +....+       ...........+|+|+| +.|+..+ .+|.
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~  304 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGR  304 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCC
Confidence            3457899999988864  233    3444666521  222222       11222334577999999 7776665 4665


Q ss_pred             EEEEE--ccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----CeEEEEecCCCCceeee
Q 010933          288 VRLVD--MRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT  360 (497)
Q Consensus       288 i~v~d--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~lwd~~~~~~~~~~  360 (497)
                      ..+|.  +.. +...    +.+..             +...+....|+|||+.|+....    ..|.+||+.. ++. ..
T Consensus       305 ~~ly~~~~~~~g~~~----~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~  365 (428)
T PRK01029        305 PRIYIMQIDPEGQSP----RLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQ  365 (428)
T ss_pred             ceEEEEECcccccce----EEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EE
Confidence            55554  432 1111    11211             1235678899999998887532    5799999975 443 33


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      +.......               ....|+|||+.|+..+.   ...|+++++..++.  ..+....+.+...+|+|
T Consensus       366 Lt~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        366 LTTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             ccCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecC
Confidence            32222111               36899999998875443   35688889887643  33333445556666765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=4e-09  Score=96.92  Aligned_cols=277  Identities=14%  Similarity=0.156  Sum_probs=158.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeec-----------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP   98 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~   98 (497)
                      .| -.|.-+.|||+.+||+|-+.           ...++|||+.+|.+                       .+.|.....
T Consensus       248 ~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l-----------------------krsF~~~~~  303 (698)
T KOG2314|consen  248 YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL-----------------------KRSFPVIKS  303 (698)
T ss_pred             cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch-----------------------hcceeccCC
Confidence            45 36789999999999998652           25799999999865                       333332110


Q ss_pred             ccccccccccccceeE-EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCC
Q 010933           99 EFDYLKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  177 (497)
Q Consensus        99 ~~~~~~~~~~~~~i~~-l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (497)
                      .          ..++. .+|  |.|++++|-...| .|.||+.....+.........+ +..+++.+.            
T Consensus       304 ~----------~~~WP~frW--S~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~g-Ir~FswsP~------------  357 (698)
T KOG2314|consen  304 P----------YLKWPIFRW--SHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISG-IRDFSWSPT------------  357 (698)
T ss_pred             C----------ccccceEEe--ccCCceeEEeccc-eEEEEecCceeeecccccCCcc-ccCcccCCC------------
Confidence            0          22333 488  6888999887774 6999988764433222221111 222222221            


Q ss_pred             cccccccccccCcceEEEeecCCccc-----------eeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-------C---C
Q 010933          178 FAHGYHLEWTENMATKIANVGNSVHA-----------RCQKVYPHAHDFNINSISNNSDCETFVSA-D-------D---L  235 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-------d---~  235 (497)
                                 +..+-.|..+.....           +.+++- .-+.-.=..+-|-.+|.+|+.- +       .   .
T Consensus       358 -----------~~llAYwtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~  425 (698)
T KOG2314|consen  358 -----------SNLLAYWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS  425 (698)
T ss_pred             -----------cceEEEEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence                       122333333322111           111110 0111111135566778887752 1       1   1


Q ss_pred             eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEEEEEccCCcccccccceecccccc
Q 010933          236 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAES  312 (497)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~~~~  312 (497)
                      .+.|+.++...-.+..        ......|...+|.|.| +.+++-+.   ..++.+|-+++.......++.+..    
T Consensus       426 n~eIfrireKdIpve~--------velke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----  492 (698)
T KOG2314|consen  426 NLEIFRIREKDIPVEV--------VELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----  492 (698)
T ss_pred             eEEEEEeeccCCCcee--------eecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc----
Confidence            3455665533333332        2355789999999999 66655443   357889988853322223344443    


Q ss_pred             cCCccccccccccccEEEEeeCCCEEEEEe----cCeEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEE
Q 010933          313 HGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFEC  386 (497)
Q Consensus       313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  386 (497)
                                 ...+.+.|+|.|++++.+.    .|.+.++|+.. .. .....  .|...                +.+
T Consensus       493 -----------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~-~k~~~~~eh~~a----------------t~v  543 (698)
T KOG2314|consen  493 -----------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-AD-LKDTASPEHFAA----------------TEV  543 (698)
T ss_pred             -----------cccceEEEcCCCcEEEEEEecccccceEEEecch-hh-hhhccCcccccc----------------ccc
Confidence                       4578999999999998752    38999999863 12 22221  22221                579


Q ss_pred             EEcCCCCEEEEEeCC------CcEEEEEcC
Q 010933          387 SVSGDGLHFATGSYS------NLLRIFSHG  410 (497)
Q Consensus       387 ~~s~~~~~l~s~~~d------g~i~vw~~~  410 (497)
                      .|.|.|+|+++++.-      .--++|+++
T Consensus       544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             eECCCCCEEEEeeehhhhccccceEEEEee
Confidence            999999999999863      344556654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.28  E-value=3.2e-11  Score=124.29  Aligned_cols=219  Identities=18%  Similarity=0.295  Sum_probs=155.9

Q ss_pred             ccccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcc
Q 010933            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEY   87 (497)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (497)
                      .+..++|....--++........+-..|.++.=+|.-.+.+||+.||.+++|....+..                     
T Consensus      2184 ~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~--------------------- 2242 (2439)
T KOG1064|consen 2184 TPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ--------------------- 2242 (2439)
T ss_pred             CcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------
Confidence            34555666553223333333334567889999999999999999999999999877643                     


Q ss_pred             cccccccc-cCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933           88 RYKTEFQS-HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        88 ~~~~~~~~-h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                        +..++. -.            .+|+.++|  +.+|..+..+..||.+.+|.....-.                     
T Consensus      2243 --v~~~rt~g~------------s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~--------------------- 2285 (2439)
T KOG1064|consen 2243 --VVCFRTAGN------------SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPY--------------------- 2285 (2439)
T ss_pred             --EEEeeccCc------------chhhhhhh--cccCCceeeeccCCceeecccCCcce---------------------
Confidence              222221 22            66899999  57888999999999999998862111                     


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E---cCCeEEEEeC
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A---DDLRINLWNL  242 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~---~d~~i~iwd~  242 (497)
                                                              .. .+.|.....+..|-.  ..+++ |   +++.+.+||.
T Consensus      2286 ----------------------------------------~s-~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2286 ----------------------------------------TS-WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred             ----------------------------------------ec-cccCCccccceeeee--hhhhccccCCCCCcccchhc
Confidence                                                    01 156777777777765  45555 2   6889999997


Q ss_pred             ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933          243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                      .......-+       -..|...++++++.|.. .+|++|+.+|.|++||++..++.    +.+..              
T Consensus      2323 l~~~~~s~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~-------------- 2376 (2439)
T KOG1064|consen 2323 LLPPMNSLV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA-------------- 2376 (2439)
T ss_pred             ccCccccee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh--------------
Confidence            643332222       25799999999999999 99999999999999999987654    22221              


Q ss_pred             cccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeee
Q 010933          323 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~  363 (497)
                              ++ ...++++|+. |.++||++.. -..+..+..
T Consensus      2377 --------~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred             --------hh-hhheeeccCcccceEEEEccc-cchhhcCch
Confidence                    33 5678888854 9999999986 556665543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.28  E-value=5.4e-10  Score=103.42  Aligned_cols=115  Identities=16%  Similarity=0.236  Sum_probs=94.3

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933          211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  289 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  289 (497)
                      ..|.+.|.++.++.+-.+|.++ .|+.+..|+.. ..+.+..       +......+.+++.+||+ ..+++++  +.|+
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik  167 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK  167 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence            5889999999999999999998 99999999998 6666665       55667788999999999 8888876  4899


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-----CCEEEEEec--CeEEEEecCC
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY--MNLKLWDIRM  353 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~--~~i~lwd~~~  353 (497)
                      +||+++++.+    ..|++             |.++|+++.|-.+     |++++++..  ..+.+|-+..
T Consensus       168 ~~~~~~kevv----~~ftg-------------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  168 VLDIETKEVV----ITFTG-------------HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEccCceEE----EEecC-------------CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999998765    45544             6789999999887     788888643  6777787653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.26  E-value=2.9e-10  Score=111.79  Aligned_cols=150  Identities=15%  Similarity=0.259  Sum_probs=121.0

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  117 (497)
Q Consensus        38 i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~  117 (497)
                      +.++++.-++++|+.-+.|.+|+....+.                      .. .+.||+            +.|.++.|
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~----------------------p~-~l~GHe------------G~iF~i~~  183 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNK----------------------PI-RLKGHE------------GSIFSIVT  183 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCC----------------------cc-eecccC------------CceEEEEE
Confidence            44577778999999999999999873321                      11 578999            99999999


Q ss_pred             EecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933          118 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  197 (497)
Q Consensus       118 ~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (497)
                        +.||++++++|.|+++++|++++.+....                                   .             
T Consensus       184 --s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-----------------------------------~-------------  213 (967)
T KOG0974|consen  184 --SLDGRYIASVSDDRSIRLWPIDSREVLGC-----------------------------------T-------------  213 (967)
T ss_pred             --ccCCcEEEEEecCcceeeeecccccccCc-----------------------------------c-------------
Confidence              68999999999999999999998774320                                   0             


Q ss_pred             cCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCeEEEEEeCCC
Q 010933          198 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIY  275 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~  275 (497)
                                  .-+|+..|+.+.+.|+  .++++ .|.+.++|+.+ ..+ .+.       ..+| ...|..++..+..
T Consensus       214 ------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~-l~~-------y~~h~g~~iw~~~~~~~~  270 (967)
T KOG0974|consen  214 ------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ-LEV-------YDEHSGKGIWKIAVPIGV  270 (967)
T ss_pred             ------------cccccceeEEEEeccc--eeEEeccceEEEEEecc-cce-ehh-------hhhhhhcceeEEEEcCCc
Confidence                        1499999999999998  77777 99999999877 333 222       3444 4678999999988


Q ss_pred             CcEEEEEeCCCeEEEEEccCC
Q 010933          276 CNLLAYSSSRGFVRLVDMRQS  296 (497)
Q Consensus       276 ~~~l~~~~~dg~i~v~d~~~~  296 (497)
                       ..+++++.|+.+++||+...
T Consensus       271 -~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  271 -IIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             -eEEEeeccCcchhhhhhhcc
Confidence             89999999999999998763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=1.3e-09  Score=92.33  Aligned_cols=158  Identities=11%  Similarity=0.012  Sum_probs=113.2

Q ss_pred             eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          217 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      ..++.|++.+..++++ .+|.+.+-+.. .....+.     .+++.|+..+..+.|+...++++++|+.|+.+..||+|.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            4578899999999999 99999855544 2222221     347899999999999988878999999999999999994


Q ss_pred             CcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccc
Q 010933          296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  373 (497)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  373 (497)
                      .+.     .+|..          ...|...|.++.-+| .+.++++|++ ..|++||.++.++++..-+...+       
T Consensus       198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG-------  255 (339)
T KOG0280|consen  198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG-------  255 (339)
T ss_pred             Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccc-------
Confidence            321     22222          133567888887776 4679999976 99999999976888766554432       


Q ss_pred             cCCCCCccceeEEEEcCC--CCEEEEEeCCCcEEEEEcCCC
Q 010933          374 LYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       374 ~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~vw~~~~~  412 (497)
                               |+.+.++|.  ++.|+++-.+ -.+|-+.+.+
T Consensus       256 ---------VWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~  286 (339)
T KOG0280|consen  256 ---------VWRIKHHPEIFHRLLAACMHN-GAKILDSSDK  286 (339)
T ss_pred             ---------eEEEEecchhhhHHHHHHHhc-CceEEEeccc
Confidence                     378999985  3344444444 3556666654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2.4e-08  Score=91.89  Aligned_cols=312  Identities=16%  Similarity=0.244  Sum_probs=185.5

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      +-+.|||-|.||+|--.-| |.+|--..                       +..++.| .|             ..|.-+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~-----------------------f~r~~RF-~H-------------p~Vq~i  255 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGES-----------------------FDRIQRF-YH-------------PGVQFI  255 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCcc-----------------------HHHHHhc-cC-------------CCceee
Confidence            6789999999999987765 88996432                       2222222 34             348889


Q ss_pred             EEEecCCCCEEEEEeCC-----------ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          116 RWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       116 ~~~~s~~~~~l~s~s~d-----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      .|  ||+.+||++-+..           ..+.|||+.+|..+......                                
T Consensus       256 df--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--------------------------------  301 (698)
T KOG2314|consen  256 DF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--------------------------------  301 (698)
T ss_pred             ec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc--------------------------------
Confidence            99  6888899986532           56788888887755432110                                


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCe-eEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNI-NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                                .. ...+ .-..||.|++++|--....|.||+..+    +..++.++.    .-
T Consensus       302 --------------------------~~-~~~~WP~frWS~DdKy~Arm~~~sisIyEtps----f~lld~Ksl----ki  346 (698)
T KOG2314|consen  302 --------------------------KS-PYLKWPIFRWSHDDKYFARMTGNSISIYETPS----FMLLDKKSL----KI  346 (698)
T ss_pred             --------------------------CC-CccccceEEeccCCceeEEeccceEEEEecCc----eeeeccccc----CC
Confidence                                      01 1122 236899999988876557899998762    333332221    22


Q ss_pred             CCeEEEEEeCCCCcEEEEEeC-----CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933          264 EVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  338 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  338 (497)
                      ..|....|+|.+ ++||.=+.     -.++.+-.+.+++.+    +.-..             +.-.-..+-|-.+|.+|
T Consensus       347 ~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nl-------------fnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  347 SGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNL-------------FNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             ccccCcccCCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccc-------------eeeeccEEEeccCCcEE
Confidence            567888999998 88876433     235666666665443    22111             11123456777889988


Q ss_pred             EEEec-----------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCcE
Q 010933          339 LSRDY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLL  404 (497)
Q Consensus       339 ~~~~~-----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i  404 (497)
                      +.-.|           ..+.|+.++...-++......+..                ..++|-|.|..+++-+.   ..++
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tv  472 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTV  472 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccce
Confidence            86321           245566665433444444443332                48999999987665443   4679


Q ss_pred             EEEEcCC-CCcceEEEeccCcceeeeEeecCCCcccccccceeEee---ccCc-eecCCC--CCcc-cccccCCCeEEEE
Q 010933          405 RIFSHGV-GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL---YRQA-HENSSS--GHHE-LSYNLSSKLLHLA  476 (497)
Q Consensus       405 ~vw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~---~d~~-~iw~~~--~~~~-~~~~~~~~i~~l~  476 (497)
                      .+|.+++ .........-.....+.+-++|  .|++     ++.+.   ..|. ..+.+.  .... ....|. .-+.+.
T Consensus       473 sfY~~e~~~~~~~lVk~~dk~~~N~vfwsP--kG~f-----vvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~ve  544 (698)
T KOG2314|consen  473 SFYAVETNIKKPSLVKELDKKFANTVFWSP--KGRF-----VVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVE  544 (698)
T ss_pred             eEEEeecCCCchhhhhhhcccccceEEEcC--CCcE-----EEEEEecccccceEEEecchhhhhhccCcccc-ccccce
Confidence            9999884 2222112222235667888888  6776     33332   2222 333222  1111 112222 346789


Q ss_pred             EecCCCEEEEEe-------CCceEEEe
Q 010933          477 WHPTTNLIACAN-------GNSLFFHY  496 (497)
Q Consensus       477 ~~p~~~~la~~~-------~~~~~i~~  496 (497)
                      |.|.|+|+++++       +++..||.
T Consensus       545 WDPtGRYvvT~ss~wrhk~d~GYri~t  571 (698)
T KOG2314|consen  545 WDPTGRYVVTSSSSWRHKVDNGYRIFT  571 (698)
T ss_pred             ECCCCCEEEEeeehhhhccccceEEEE
Confidence            999999999887       45566654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.23  E-value=1.1e-07  Score=98.77  Aligned_cols=316  Identities=11%  Similarity=0.099  Sum_probs=183.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEE----EecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ..+.|.++.|-++...|+.+..+|.|.+.    +......                     +.+..+   +         
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~---------------------E~VG~v---d---------  120 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI---------------------EIVGSV---D---------  120 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee---------------------EEEEEE---c---------
Confidence            45789999999999999999999999999    4333221                     222211   2         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecC----c---------hh-----------eeccccCCCC--------
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR----D---------QK-----------VKKIKEMDHF--------  154 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~----~---------~~-----------~~~~~~~~~~--------  154 (497)
                         .+|.+++|  |||.+.|+.+..++++.+-.-.    .         +.           ..++......        
T Consensus       121 ---~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~  195 (928)
T PF04762_consen  121 ---SGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD  195 (928)
T ss_pred             ---CcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence               88999999  7899999999988888875321    0         00           0000000000        


Q ss_pred             Cc---cccccccccccCccccCCCCCccccccccc--cc--CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC
Q 010933          155 PF---VSSENTLLAEKNFMNEHNPPSFAHGYHLEW--TE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE  227 (497)
Q Consensus       155 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  227 (497)
                      +.   +..-... .+..-+..+|-.++.+++....  ..  ...+++|+.+.......     ..-.+--.+++|.|.|+
T Consensus       196 p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stS-----E~v~gLe~~l~WrPsG~  269 (928)
T PF04762_consen  196 PTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTS-----EPVDGLEGALSWRPSGN  269 (928)
T ss_pred             CCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEecc-----ccCCCccCCccCCCCCC
Confidence            00   0000011 2334555666777888877765  22  46899999874311111     11122234689999999


Q ss_pred             EEEEE-c---CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933          228 TFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  303 (497)
Q Consensus       228 ~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  303 (497)
                      +||+. .   ...|.+|..+ +-+ ..-+.++   +......|..+.|++++ ..||..-.|. |.+|-..+..-..+..
T Consensus       270 lIA~~q~~~~~~~VvFfErN-GLr-hgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqe  342 (928)
T PF04762_consen  270 LIASSQRLPDRHDVVFFERN-GLR-HGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQE  342 (928)
T ss_pred             EEEEEEEcCCCcEEEEEecC-CcE-eeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence            99986 3   4567777765 333 2223222   33556789999999999 8999877665 9999987754332221


Q ss_pred             ceecccccccCCccccccccccccEEEEeeCCC-EEEEEec-CeEEEEec----CCC-------Cceeeeeeecc-----
Q 010933          304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDI----RMD-------STPVATFKIHE-----  365 (497)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~-~~i~lwd~----~~~-------~~~~~~~~~~~-----  365 (497)
                      -.+..              ...+..+.|+|... .|..... |.+..++.    ...       ...+..+.|..     
T Consensus       343 i~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTp  408 (928)
T PF04762_consen  343 IRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTP  408 (928)
T ss_pred             EEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEec
Confidence            22222              12344588887543 3444332 55544432    110       01122222221     


Q ss_pred             ---cccc-cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          366 ---HLRP-KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       366 ---~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                         ..++ .||. +.-..-..+.+++|++++..+++-..||.|.+|.....
T Consensus       409 f~~a~VPPPMs~-~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  409 FRRAVVPPPMSS-YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             ccccCCCchHhc-eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence               1111 1221 11111122469999999988999999999999996543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.21  E-value=2.4e-09  Score=90.71  Aligned_cols=164  Identities=18%  Similarity=0.221  Sum_probs=108.8

Q ss_pred             cCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 010933          211 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  288 (497)
Q Consensus       211 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  288 (497)
                      +.|..+++.+.|+. +.+.+.+| +|+.+..||++..+..+-.      ..+-|...|.++.-+|..+.++++|+.|..|
T Consensus       162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeecceEEEecCCCCCceEEEeccccce
Confidence            78999999999976 45577788 9999999999955543321      2456889999999888766899999999999


Q ss_pred             EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--CEEEEEecCeEEEEecCCCC-c---eeeeee
Q 010933          289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDS-T---PVATFK  362 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~lwd~~~~~-~---~~~~~~  362 (497)
                      ++||.|+...     ..++.            ...+.|+.+..+|.-  ++|+++-.+-.+|-+..... +   .+...+
T Consensus       236 ~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~  298 (339)
T KOG0280|consen  236 RVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK  298 (339)
T ss_pred             eeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence            9999995432     12222            113679999999853  34555544556666665321 1   223334


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEE-EEEcCCC
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLR-IFSHGVG  412 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~-vw~~~~~  412 (497)
                      .|....               ..-.|.....+|||++. |+.++ +|-.-++
T Consensus       299 ~hdSl~---------------YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  299 IHDSLC---------------YGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccccee---------------eccccccccceeeeeeccccceeeeeeeccC
Confidence            444321               34445333457888764 77755 7765544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=5.3e-09  Score=97.03  Aligned_cols=192  Identities=14%  Similarity=0.119  Sum_probs=138.0

Q ss_pred             CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe------C--------------CCCcEEEEE
Q 010933          224 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH------P--------------IYCNLLAYS  282 (497)
Q Consensus       224 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~--------------~~~~~l~~~  282 (497)
                      |...++|.. .||.+++|+... ++..+-+.    .....++.-++..|.      |              +. .+++-|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~----p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t-~~lvlg   76 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFA----PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT-SMLVLG   76 (541)
T ss_pred             chhheEeecCCCCeEEEEEccC-ceeeeeec----cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc-eEEEee
Confidence            445678888 999999999984 43333210    011122333333331      1              22 568888


Q ss_pred             eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee
Q 010933          283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~  361 (497)
                      ...|.|.+|++..++..    ..+..           ..|.+.++++.++.+-..|.+++ |+.+..|+... .+.++.+
T Consensus        77 t~~g~v~~ys~~~g~it----~~~st-----------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~  140 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEIT----AKLST-----------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIW  140 (541)
T ss_pred             cCCccEEEEEecCCeEE----EEEec-----------CCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeee
Confidence            88999999999988765    33332           45678999999998888888874 59999999986 7888888


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccc
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  441 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  441 (497)
                      +.....+               .+++.+|||+.|++++.  .|++||+++++ +..++.+|.++|+++.|....++-. +
T Consensus       141 ~~~~~~~---------------~sl~is~D~~~l~~as~--~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~-G  201 (541)
T KOG4547|consen  141 KEQKPLV---------------SSLCISPDGKILLTASR--QIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGII-G  201 (541)
T ss_pred             ccCCCcc---------------ceEEEcCCCCEEEeccc--eEEEEEccCce-EEEEecCCCcceEEEEEEEeccccc-c
Confidence            7776654               58999999999999884  89999999984 4599999999999999987533221 1


Q ss_pred             ccceeEeeccCc-eec
Q 010933          442 LSNLTRGLYRQA-HEN  456 (497)
Q Consensus       442 ~~~l~~~~~d~~-~iw  456 (497)
                      ..+|.+...+.. .+|
T Consensus       202 ~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  202 KYVLSSAAAERGITVW  217 (541)
T ss_pred             ceeeeccccccceeEE
Confidence            234555555555 888

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.19  E-value=4.8e-10  Score=96.83  Aligned_cols=237  Identities=11%  Similarity=0.109  Sum_probs=149.4

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce-eeEEeecCCCccCCC------------CCCeEEEEEeCCC-CcE
Q 010933          214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDL------------TEVITSAEFHPIY-CNL  278 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~-~~~  278 (497)
                      ..-|.++.|...|++|++| .+|.|.+|..+...+ .....    .+++.|            ...|..+.|.+++ ...
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~----t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQ----TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeee----eeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            4568899999999999999 999999998663332 11110    012222            3678899998775 246


Q ss_pred             EEEEeCCCeEEEEEccCCccccccc----------------ceecccc---cccCCccccccccccccEEEEeeCCCEEE
Q 010933          279 LAYSSSRGFVRLVDMRQSALCDHSA----------------RILRDAA---ESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       279 l~~~~~dg~i~v~d~~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ++..+.|.+|++|-++.........                .....|.   +....+..-.+|.--|++++++.|++.++
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l  180 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL  180 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence            7788899999999987654321000                0000000   00011122357888999999999999999


Q ss_pred             EEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcce--
Q 010933          340 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGG--  416 (497)
Q Consensus       340 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~--  416 (497)
                      +++|=.|.+|++.-..+..............        -..-|++..|+|. ...++..+..|+|++-|++......  
T Consensus       181 SADdLRINLWnlei~d~sFnIVDIKP~nmEe--------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  181 SADDLRINLWNLEIIDQSFNIVDIKPANMEE--------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             eccceeeeeccccccCCceeEEEccccCHHH--------HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence            9999999999997544433333222211110        0011368999995 4577778889999999998542110  


Q ss_pred             -EEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933          417 -ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  495 (497)
Q Consensus       417 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~  495 (497)
                       ..++....|+..                                  .-..+.-..|.++.|+++|++|++=+...+.+|
T Consensus       253 sKlfEepedp~~r----------------------------------sffseiIsSISDvKFs~sGryilsRDyltvk~w  298 (433)
T KOG1354|consen  253 SKLFEEPEDPSSR----------------------------------SFFSEIISSISDVKFSHSGRYILSRDYLTVKLW  298 (433)
T ss_pred             hhhhccccCCcch----------------------------------hhHHHHhhhhhceEEccCCcEEEEeccceeEEE
Confidence             001111111100                                  001122347889999999999999999999999


Q ss_pred             e
Q 010933          496 Y  496 (497)
Q Consensus       496 ~  496 (497)
                      .
T Consensus       299 D  299 (433)
T KOG1354|consen  299 D  299 (433)
T ss_pred             e
Confidence            6

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.18  E-value=3.4e-07  Score=95.23  Aligned_cols=283  Identities=11%  Similarity=0.063  Sum_probs=171.8

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEe----ecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLW----KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                      +.|.++.|.  ++...++.+..+|.|.+.    +.......                                       
T Consensus        76 ~~ivs~~yl--~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E---------------------------------------  114 (928)
T PF04762_consen   76 DKIVSFQYL--ADSESLCIALASGDIILVREDPDPDEDEIE---------------------------------------  114 (928)
T ss_pred             CcEEEEEec--cCCCcEEEEECCceEEEEEccCCCCCceeE---------------------------------------
Confidence            679999995  677788889899999988    33333211                                       


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC--------------ceeeE
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------------DQCFN  250 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~--------------~~~~~  250 (497)
                                         ++.    .-...|.+++||||++.++.. .++++.+....-.              .+.+.
T Consensus       115 -------------------~VG----~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~Vs  171 (928)
T PF04762_consen  115 -------------------IVG----SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVS  171 (928)
T ss_pred             -------------------EEE----EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceee
Confidence                               222    225689999999999999988 8888877643210              00000


Q ss_pred             EeecCC--------------------------CccCCCCCCeEEEEEeCCCCcEEEEEeC---C---CeEEEEEccCCcc
Q 010933          251 IVDMKP--------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSS---R---GFVRLVDMRQSAL  298 (497)
Q Consensus       251 ~~~~~~--------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d---g~i~v~d~~~~~~  298 (497)
                      +=..+.                          ..+. ..+.-..++|-.|| .++|+.+.   .   +.+|||+-+ |.+
T Consensus       172 VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L  248 (928)
T PF04762_consen  172 VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GEL  248 (928)
T ss_pred             eccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceE
Confidence            000000                          0111 33455788999999 99998875   2   579999955 543


Q ss_pred             cccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c-CeEEEEecCCCCceeeeeeeccccccccccc
Q 010933          299 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  374 (497)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  374 (497)
                      ..    +-+.             -.+--.+++|-|.|++||+..   + ..|.+|.-+  |-....|......       
T Consensus       249 ~s----tSE~-------------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~~~-------  302 (928)
T PF04762_consen  249 QS----TSEP-------------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLRFDP-------  302 (928)
T ss_pred             Ee----cccc-------------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecCCCC-------
Confidence            21    1111             012345789999999999963   2 677777753  5444444433211       


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc-ceEEEeccC-cceeeeEeecCCCcccccccceeEeeccC
Q 010933          375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA-GGITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQ  452 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~~~~~d~  452 (497)
                          ....+..+.|++|+..||..-.|. |.+|-..+..- +++.+.... ..+..+.|.|.+..+      |......+
T Consensus       303 ----~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~------L~v~t~~g  371 (928)
T PF04762_consen  303 ----EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR------LHVLTSNG  371 (928)
T ss_pred             ----CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE------EEEEecCC
Confidence                000126899999999999977665 99999887642 334444332 234447777763332      33333322


Q ss_pred             c---e--ec----CCCC-----------------------------CcccccccCCCeEEEEEecCCCEEEEEeCCc-eE
Q 010933          453 A---H--EN----SSSG-----------------------------HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LF  493 (497)
Q Consensus       453 ~---~--iw----~~~~-----------------------------~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~  493 (497)
                      .   .  .|    ..+.                             +.........+|.+++|++++..+|+-..++ +.
T Consensus       372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~  451 (928)
T PF04762_consen  372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLS  451 (928)
T ss_pred             cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence            2   1  12    1000                             0011234567999999999998777776555 88


Q ss_pred             EEe
Q 010933          494 FHY  496 (497)
Q Consensus       494 i~~  496 (497)
                      +|.
T Consensus       452 ~~~  454 (928)
T PF04762_consen  452 IYE  454 (928)
T ss_pred             EEE
Confidence            875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.17  E-value=6.2e-09  Score=87.05  Aligned_cols=168  Identities=12%  Similarity=0.007  Sum_probs=108.5

Q ss_pred             eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          217 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      +.+++++++++++++- +...|..|.+......+..+     .....++.-.+..|+... ..+|+++.||.+.|||+|.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence            7789999999999986 89999999988544433221     133344555788899888 8999999999999999998


Q ss_pred             CcccccccceecccccccCCccccccccccccEEEEeeCCC--EEEEEec-CeEEEEecCCCCceeeeeeeccccccccc
Q 010933          296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  372 (497)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  372 (497)
                      .....    ....        .+-+.|.+.+..+.|++-|.  +|+.... +.+.+-|+++ .+-.+.+...+..-    
T Consensus       235 ~~tpm----~~~s--------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~----  297 (344)
T KOG4532|consen  235 MATPM----AEIS--------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE----  297 (344)
T ss_pred             cccch----hhhc--------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc----
Confidence            65331    1111        11234779999999998663  4555544 9999999997 66555554333210    


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                        . .....++....|+.++.-+.+.+++ .+.-|++.+
T Consensus       298 --~-~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  298 --R-KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             --c-cccccccccccccCCCcccccccch-hhheeeccc
Confidence              0 0000112356676666655554443 344455543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.16  E-value=3.2e-09  Score=91.89  Aligned_cols=250  Identities=9%  Similarity=0.062  Sum_probs=177.5

Q ss_pred             cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCc-hheeccccCCCCCccccccccc
Q 010933           86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLL  164 (497)
Q Consensus        86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~  164 (497)
                      ++.++..++||.            +.|++....  |...-+++++.|.++++|--.+ ++.-.                 
T Consensus        13 kp~ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wp-----------------   61 (404)
T KOG1409|consen   13 KPELLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWP-----------------   61 (404)
T ss_pred             chhhhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCc-----------------
Confidence            345677788888            778887764  4556799999999999995433 33110                 


Q ss_pred             cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933          165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  243 (497)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~  243 (497)
                                                              .+.   ..-..+++++.+.++...|+.| .+|++.-+.+.
T Consensus        62 ----------------------------------------sI~---~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   62 ----------------------------------------SIY---HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS   98 (404)
T ss_pred             ----------------------------------------hhh---hhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence                                                    000   2335678899999999999999 99999998766


Q ss_pred             cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      ..-.....    +.....|...+..+.|+-.. ..+++.+.|..+.-.-.+.+..+..  ..++                
T Consensus        99 edfnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~--Y~~~----------------  155 (404)
T KOG1409|consen   99 EDFNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGG--YNFE----------------  155 (404)
T ss_pred             hhhhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccc--eEee----------------
Confidence            22221111    12356799999999999887 8999999998887666666543321  1111                


Q ss_pred             ccccEEEEeeCCCEEEEEec-CeEEEEecCC-CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933          324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  401 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  401 (497)
                      ..-+++.+.-.  +...|+. |.|.+-.+.. .-.++.++.+|...+               ++++|.+..+.|++|..|
T Consensus       156 ~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d  218 (404)
T KOG1409|consen  156 TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASD  218 (404)
T ss_pred             ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEecccc
Confidence            12223333322  4455543 6665554432 246788888888865               799999999999999999


Q ss_pred             CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ..+.+||+.-.......+.+|.+.|..+...+  -.+.     +.+.+.||. .+|
T Consensus       219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~--~t~~-----l~S~~edg~i~~w  267 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ--HTRQ-----LISCGEDGGIVVW  267 (404)
T ss_pred             CceEEEeccCCcceeeeeccchhhhhhhhhhh--hhee-----eeeccCCCeEEEE
Confidence            99999999988888899999999998887765  3333     889999999 999

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=9.6e-10  Score=103.82  Aligned_cols=240  Identities=8%  Similarity=0.080  Sum_probs=160.6

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEe------ecC-CCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933          214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV------DMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSSR  285 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~------~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  285 (497)
                      .....+++|+....++++| .||.+++..+.+.....+.-      .+. ..++++|...|.-+.|+.+. ..|-+...+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence            3457899999999999998 99999999876422111110      000 14689999999999999998 889999999


Q ss_pred             CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCcee--eeee
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPV--ATFK  362 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~--~~~~  362 (497)
                      |.|.+|=+-.+.-+......-.               ++.|.+|+|+.||..+... .||.|.+=.+.  +..+  +.++
T Consensus        93 GlIiVWmlykgsW~EEMiNnRn---------------KSvV~SmsWn~dG~kIcIvYeDGavIVGsvd--GNRIwgKeLk  155 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRN---------------KSVVVSMSWNLDGTKICIVYEDGAVIVGSVD--GNRIWGKELK  155 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcC---------------ccEEEEEEEcCCCcEEEEEEccCCEEEEeec--cceecchhcc
Confidence            9999999988765532211111               3678999999999988776 66888877775  3322  2233


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce------EE----EeccCcceeeeEee
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG------IT----VEAGKNENRKPILQ  432 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~------~~----~~~~~~~v~~~~~~  432 (497)
                      +...                 ..+.|++|.+.+..+-..|.+++||.+..-...      ..    +..-...+-.+.+.
T Consensus       156 g~~l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~  218 (1189)
T KOG2041|consen  156 GQLL-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN  218 (1189)
T ss_pred             hhec-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence            3322                 369999999999989999999999976531110      00    11111123333333


Q ss_pred             cCCCccc-ccccceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933          433 AAPRARR-SSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       433 ~~~~~~~-~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~  488 (497)
                      ...-... ...+.|+.+-..|. .+- +.........+..-.|....|+++|.+||+++
T Consensus       219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence            2211111 12356888888888 444 44433334444456888999999999999988

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=3e-09  Score=95.22  Aligned_cols=326  Identities=15%  Similarity=0.124  Sum_probs=205.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      -|.+.|+.+.-+. .+++.+++.||.++.|.-....                    -.+++..+..|-            
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL------------   53 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL------------   53 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH------------
Confidence            4778888877654 5799999999999999864411                    235678888898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      ..|.+++-  +-++.++.+.+. |..++++|+++-......+....+           +.........+...+.+.+...
T Consensus        54 ~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-----------g~a~wv~skGd~~s~IAVs~~~  120 (558)
T KOG0882|consen   54 GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-----------GFAEWVTSKGDKISLIAVSLFK  120 (558)
T ss_pred             HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCC-----------CceEEecCCCCeeeeEEeeccc
Confidence            77888888  678888888776 999999999987766554443332           1111111122222334444456


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceee-E--EeecCCC----ccC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-N--IVDMKPS----NMD  260 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-~--~~~~~~~----~~~  260 (497)
                      .+.+.++|........+.  +-.-|..+|..+.+++-+..+++. ..|.|.-|..+..-+.. .  .+.+|..    .+.
T Consensus       121 sg~i~VvD~~~d~~q~~~--fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~  198 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFCQDGY--FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP  198 (558)
T ss_pred             CCCcEEECCcCCcCccce--ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence            778888887654322222  225789999999999999999999 89999999887211100 0  1111211    122


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc---------------ccccc-cc
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS---------------FFTEI-IA  324 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~  324 (497)
                      .......++.|+|++ ..+.+-+.|..|++++++++++...........+..+....               .+..| ..
T Consensus       199 K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~  277 (558)
T KOG0882|consen  199 KAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST  277 (558)
T ss_pred             ccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence            345667899999999 99999999999999999999876322111111111111110               01122 23


Q ss_pred             cccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCC------------CCCccceeEEEEcCCC
Q 010933          325 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN------------NDSIFDKFECSVSGDG  392 (497)
Q Consensus       325 ~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~s~~~  392 (497)
                      .-..+.|...|++|+.|+-=-|++.++.+ +.+++.+-..+........+|.            ..+..  -.+.+.+|-
T Consensus       278 ~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~n--p~~~~~~dp  354 (558)
T KOG0882|consen  278 VGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNN--PLLEFQKDP  354 (558)
T ss_pred             ccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccC--cccccCCCC
Confidence            34667899999999999886789999886 6655554322221111001110            00111  124466677


Q ss_pred             CEEEEEeCCCcEEEE
Q 010933          393 LHFATGSYSNLLRIF  407 (497)
Q Consensus       393 ~~l~s~~~dg~i~vw  407 (497)
                      ..++++-..+++++|
T Consensus       355 t~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  355 TIVCTAFKKNRFYLF  369 (558)
T ss_pred             eEEEeeeecceEEEE
Confidence            777777778888888

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.11  E-value=2.7e-08  Score=89.92  Aligned_cols=147  Identities=14%  Similarity=0.246  Sum_probs=111.8

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCC-eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      +++|...|.-..+..+++-++.|..|| .+-|+|..+++.                        +.+...-         
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------------------------kr~e~~l---------  401 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------------------------KRIEKDL---------  401 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------------------------EEeeCCc---------
Confidence            346778899999998888999999999 899999988752                        2233333         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         +.|.++..  +++|++++.+.....+.+.|++++....+.                                     
T Consensus       402 ---g~I~av~v--s~dGK~~vvaNdr~el~vididngnv~~id-------------------------------------  439 (668)
T COG4946         402 ---GNIEAVKV--SPDGKKVVVANDRFELWVIDIDNGNVRLID-------------------------------------  439 (668)
T ss_pred             ---cceEEEEE--cCCCcEEEEEcCceEEEEEEecCCCeeEec-------------------------------------
Confidence               77999999  789999999998899999999988754421                                     


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCccCceeeEEeecCCCccCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                              +...+-|+...|+|+++++|.+ -+    ..|+++|+. +++...+        ..
T Consensus       440 ------------------------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~v--------TT  486 (668)
T COG4946         440 ------------------------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYDV--------TT  486 (668)
T ss_pred             ------------------------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEEe--------cC
Confidence                                    3445678999999999999987 54    478999999 6665553        22


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEe
Q 010933          262 LTEVITSAEFHPIYCNLLAYSS  283 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~  283 (497)
                      ..+.-.+-+|+|++ ++|..-+
T Consensus       487 ~ta~DfsPaFD~d~-ryLYfLs  507 (668)
T COG4946         487 PTAYDFSPAFDPDG-RYLYFLS  507 (668)
T ss_pred             CcccccCcccCCCC-cEEEEEe
Confidence            33334566899999 7766554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.09  E-value=4e-07  Score=82.58  Aligned_cols=173  Identities=21%  Similarity=0.303  Sum_probs=124.8

Q ss_pred             EcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEE
Q 010933           40 FDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  118 (497)
Q Consensus        40 ~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~  118 (497)
                      |++ +|+++|..|. |...|.+...+-                         ..--+|.            ++|.-.++ 
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-------------------------~iqv~~~------------~~VrY~r~-  367 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGY-------------------------SIQVGKK------------GGVRYRRI-  367 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCe-------------------------eEEcCCC------------CceEEEEE-
Confidence            454 6889988885 667776654431                         1112454            67877777 


Q ss_pred             ecCCCCEEEEEeCCc-cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933          119 AAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  197 (497)
Q Consensus       119 ~s~~~~~l~s~s~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (497)
                       ..+++-++.|..|| .+-|+|..+++.+.+                                                 
T Consensus       368 -~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-------------------------------------------------  397 (668)
T COG4946         368 -QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-------------------------------------------------  397 (668)
T ss_pred             -ccCCcceEEeccCCceEEEEecCCceEEEe-------------------------------------------------
Confidence             45666888898888 999999998886553                                                 


Q ss_pred             cCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCC
Q 010933          198 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  276 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  276 (497)
                                   ...-+.|.++..+++|+.++.+ +...+.+.|++ ++....+       -+...+-|+.+.|+|++ 
T Consensus       398 -------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~i-------dkS~~~lItdf~~~~ns-  455 (668)
T COG4946         398 -------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLI-------DKSEYGLITDFDWHPNS-  455 (668)
T ss_pred             -------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEe-------cccccceeEEEEEcCCc-
Confidence                         3445689999999999999999 88899999999 4433322       23456789999999999 


Q ss_pred             cEEEEEeCCC----eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          277 NLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       277 ~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      .++|.+--+|    .|+++|+..++..    .+-..              ...=.+-+|.|++++|..-
T Consensus       456 r~iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         456 RWIAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             eeEEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEEEE
Confidence            9999886654    7999999988544    11111              1234567899999988653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.09  E-value=2.4e-07  Score=98.28  Aligned_cols=188  Identities=13%  Similarity=0.130  Sum_probs=106.3

Q ss_pred             eeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecC--CCccCC------CCCCeEEEEEeCCCCc-EEEEEeCC
Q 010933          217 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDD------LTEVITSAEFHPIYCN-LLAYSSSR  285 (497)
Q Consensus       217 v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~------~~~~i~~~~~~~~~~~-~l~~~~~d  285 (497)
                      .+.++++| ++..+++. .++.|++||.. .+..... ...  .....+      .-.....++++|++ . ++++-+.+
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v~~~-~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n  761 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVTRVF-SGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSES  761 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECC-CCeEEEE-ecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCC
Confidence            35789999 55555666 88999999987 3332211 000  000011      11345789999998 6 55555667


Q ss_pred             CeEEEEEccCCcccccccceecccccccCCcccc--------ccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCc
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST  356 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~  356 (497)
                      +.|++||+.++...    ....+..........+        ...-.....++++++|+++++-.. +.|++||..+ +.
T Consensus       762 ~~Irv~D~~tg~~~----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~  836 (1057)
T PLN02919        762 SSIRALDLKTGGSR----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR  836 (1057)
T ss_pred             CeEEEEECCCCcEE----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence            99999999876421    0000000000000000        001123468999999987766544 9999999874 43


Q ss_pred             eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      . ..+.+....-.. -.............++++++|+.+++-+.++.|++||+.++..
T Consensus       837 v-~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        837 V-TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             E-EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            3 333321100000 0000000011125899999999999989999999999988754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.08  E-value=1.1e-06  Score=80.36  Aligned_cols=253  Identities=10%  Similarity=0.046  Sum_probs=139.4

Q ss_pred             cCCCCEEEEEeC----------CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          120 APNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       120 s~~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +||++.++.+..          +..|.+||..+.+.......+..++.      ...........++++++++...+.++
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~------~~~~~~~~~~ls~dgk~l~V~n~~p~  127 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF------LVGTYPWMTSLTPDNKTLLFYQFSPS  127 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh------hccCccceEEECCCCCEEEEecCCCC
Confidence            789988888754          78999999999886654433322110      00111223444667777777777677


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCC-----CCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-----LTE  264 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~  264 (497)
                      ..+.+.|+....   .+...-.  ..... +--..+...++-+.||......+...++.... ..+  .+..     ...
T Consensus       128 ~~V~VvD~~~~k---vv~ei~v--p~~~~-vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~-~~~--vf~~~~~~v~~r  198 (352)
T TIGR02658       128 PAVGVVDLEGKA---FVRMMDV--PDCYH-IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK-PTE--VFHPEDEYLINH  198 (352)
T ss_pred             CEEEEEECCCCc---EEEEEeC--CCCcE-EEEecCCccEEEeecCceEEEEecCCCceEEe-eee--eecCCccccccC
Confidence            888888887542   2222201  11111 11122222333334444444333322321110 000  0001     012


Q ss_pred             CeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-
Q 010933          265 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  342 (497)
Q Consensus       265 ~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-  342 (497)
                      +    .|.+ +| .++.+... |.|.+.|+........  ..+..-... .....+  ..+.+.-++++|+++.++.+. 
T Consensus       199 P----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~--~~~~~~~~~-~~~~~w--rP~g~q~ia~~~dg~~lyV~~~  267 (352)
T TIGR02658       199 P----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFL--PAIEAFTEA-EKADGW--RPGGWQQVAYHRARDRIYLLAD  267 (352)
T ss_pred             C----ceEcCCC-cEEEEecC-CeEEEEecCCCcceec--ceeeecccc-cccccc--CCCcceeEEEcCCCCEEEEEec
Confidence            2    4455 66 66655555 9999999755432111  111110000 000000  113445599999998887742 


Q ss_pred             --------c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCcEEEEEcC
Q 010933          343 --------Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHG  410 (497)
Q Consensus       343 --------~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~vw~~~  410 (497)
                              +  +.|.++|..+ ++.+..+......                ..++++||++ +|++.. .++.|.++|..
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             CCccccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence                    1  5899999987 8888887754432                5899999999 887666 57889999999


Q ss_pred             CCCcc
Q 010933          411 VGSAG  415 (497)
Q Consensus       411 ~~~~~  415 (497)
                      +++.+
T Consensus       331 t~k~i  335 (352)
T TIGR02658       331 TGKEL  335 (352)
T ss_pred             CCeEE
Confidence            88554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=1.1e-09  Score=103.84  Aligned_cols=295  Identities=13%  Similarity=0.125  Sum_probs=183.6

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      -.+.+.++.++|.|+-+|.++.-| +.+-|+...-.                   .++.+..+..              -
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-------------------ppr~l~h~tp--------------w   68 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-------------------PPRWLHHITP--------------W   68 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-------------------CceeeeccCc--------------c
Confidence            357889999999999999998776 67778765321                   2233333322              2


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|-.+.|+|.+...+-+.........+|++....-                                             
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~---------------------------------------------  103 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS---------------------------------------------  103 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCc---------------------------------------------
Confidence            37788998766666666666666677888754321                                             


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                   +.+..++.+|...|+.+.|+|+.. .++++ .|..+..||+++....+..       ...-......
T Consensus       104 -------------~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-------~~~w~s~asq  163 (1081)
T KOG0309|consen  104 -------------NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-------TSSWRSAASQ  163 (1081)
T ss_pred             -------------cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee-------eecccccCce
Confidence                         112222479999999999998654 56778 9999999999976666654       2223344577


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEecCeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDYMNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~i  346 (497)
                      ++|+-.. ..+++.+..+.|++||++.|....   ..+             .+|...++.+.|..  .++.+-++.|++|
T Consensus       164 Vkwnyk~-p~vlasshg~~i~vwd~r~gs~pl---~s~-------------K~~vs~vn~~~fnr~~~s~~~s~~~d~tv  226 (1081)
T KOG0309|consen  164 VKWNYKD-PNVLASSHGNDIFVWDLRKGSTPL---CSL-------------KGHVSSVNSIDFNRFKYSEIMSSSNDGTV  226 (1081)
T ss_pred             eeecccC-cchhhhccCCceEEEeccCCCcce---EEe-------------cccceeeehHHHhhhhhhhhcccCCCCce
Confidence            8898766 344556677889999999875432   111             23456778888764  2344445577999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC--EEE---------EEeCCCcEEEEEcCCCCcc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFA---------TGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~---------s~~~dg~i~vw~~~~~~~~  415 (497)
                      ++||....-+.-........++               +.-.+-|=|+  ++.         ----++....|++.++...
T Consensus       227 kfw~y~kSt~e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~p  291 (1081)
T KOG0309|consen  227 KFWDYSKSTTESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTP  291 (1081)
T ss_pred             eeecccccccccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcc
Confidence            9999875222211111111111               3344444222  221         1112334445666666666


Q ss_pred             eEEEeccCcceeeeEeecCCC--c-ccccccceeEeeccCc-eec
Q 010933          416 GITVEAGKNENRKPILQAAPR--A-RRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~--~-~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .+.+.||.+.|....+.....  + +-+-.--|++-+.|.. ++|
T Consensus       292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            789999999888777654211  0 0000123789999988 999

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.04  E-value=4.7e-09  Score=92.87  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=68.5

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933          211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  289 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  289 (497)
                      -+|-+.++.++|+||+++|+++ .|..|++-... .--.+..+      +.||+.-|..++.-++  ..|++++.|++|+
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~--~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN--YLLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence            4999999999999999999999 99999998776 22233322      5689999999999987  4699999999999


Q ss_pred             EEEccCCccc
Q 010933          290 LVDMRQSALC  299 (497)
Q Consensus       290 v~d~~~~~~~  299 (497)
                      +||+++|+.+
T Consensus       219 ~Wd~~sgk~L  228 (390)
T KOG3914|consen  219 LWDITSGKLL  228 (390)
T ss_pred             EEecccCCcc
Confidence            9999999876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.2e-07  Score=90.49  Aligned_cols=198  Identities=14%  Similarity=0.111  Sum_probs=116.9

Q ss_pred             cceEEEEEcCCCCE-EEEeec---CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           33 DIVSAIEFDKTGDY-LAVGDR---GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        33 ~~I~~i~~sp~g~~-lasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +.+....|||||+. ++..+.   +..|.++|+.+++.                     +.+....              
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------------~~lt~~~--------------  232 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------------EKIASSQ--------------  232 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------------EEEecCC--------------
Confidence            47788999999985 664443   35688889887753                     2222222              


Q ss_pred             ccceeEEEEEecCCCCEEEEE-eCC--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILS-TND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~-s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                       +......|  +|||+.++.. +.+  ..|.++++.++....+                                     
T Consensus       233 -g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L-------------------------------------  272 (419)
T PRK04043        233 -GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI-------------------------------------  272 (419)
T ss_pred             -CcEEeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEc-------------------------------------
Confidence             33556778  7899877654 333  4566667666553322                                     


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCccCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                               ..+........|+|||+.|+..  ..+  .|++.|+. ++...++.      ..+
T Consensus       273 -------------------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt------~~g  320 (419)
T PRK04043        273 -------------------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV------FHG  320 (419)
T ss_pred             -------------------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc------cCC
Confidence                                     1112222345799999988764  333  67777777 44433321      222


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCC---------CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  332 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  332 (497)
                      .    ....|+|+| +.|+..+..         ..|.+.|+.++..     +.+..              ........|+
T Consensus       321 ~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~p~~S  376 (419)
T PRK04043        321 K----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQFPRFS  376 (419)
T ss_pred             C----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCCeEEC
Confidence            1    124899999 777666543         3688888877653     22222              0123358899


Q ss_pred             eCCCEEEEEec----CeEEEEecCCCCceeeeeee
Q 010933          333 NDGQHLLSRDY----MNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       333 ~~g~~l~~~~~----~~i~lwd~~~~~~~~~~~~~  363 (497)
                      |||+.|+....    ..+.+.++.  +.....+..
T Consensus       377 PDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l~~  409 (419)
T PRK04043        377 SDGGSIMFIKYLGNQSALGIIRLN--YNKSFLFPL  409 (419)
T ss_pred             CCCCEEEEEEccCCcEEEEEEecC--CCeeEEeec
Confidence            99998877532    345566664  554444443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=7.1e-10  Score=101.67  Aligned_cols=220  Identities=24%  Similarity=0.318  Sum_probs=143.9

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh-eeccccCCCCCccccccccccccC
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      +..+.||+            +.|..++-.  .+...+++++.|++|++|.+.... .+.                     
T Consensus       728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~---------------------  772 (1034)
T KOG4190|consen  728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIG---------------------  772 (1034)
T ss_pred             eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccc---------------------
Confidence            34567777            778888663  455679999999999999986422 110                     


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCcee
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC  248 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~  248 (497)
                                                       +..|..+| ..|..+|.++.|-.+.+.++++ |+.|.+||.-.+...
T Consensus       773 ---------------------------------tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~L  817 (1034)
T KOG4190|consen  773 ---------------------------------TSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLL  817 (1034)
T ss_pred             ---------------------------------cceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchh
Confidence                                             22466677 8999999999999888887766 778999997744333


Q ss_pred             eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      .+..+.+   -.+....|.++.-- +..-+++.++...+++++|.|..+..    ..++. .+.       .+....+.+
T Consensus       818 aq~~dap---k~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cna-------~~Pna~~R~  881 (1034)
T KOG4190|consen  818 AQMEDAP---KEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWT----CELKV-CNA-------PGPNALTRA  881 (1034)
T ss_pred             HhhhcCc---ccCCCceeEecccC-cchheeeeccchhhheeeecccccce----eeEEe-ccC-------CCCchheeE
Confidence            3232111   11222333333211 22133444577899999999987644    22222 111       112356889


Q ss_pred             EEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE-
Q 010933          329 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI-  406 (497)
Q Consensus       329 ~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v-  406 (497)
                      ++.-+.|++++++ +.|.|.+.|.++ ++.+..++.-+      |++         ..++ .|..+.|+....|..+.| 
T Consensus       882 iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpme------cdl---------lqla-apsdq~L~~saldHslaVn  944 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPME------CDL---------LQLA-APSDQALAQSALDHSLAVN  944 (1034)
T ss_pred             EEeccCcchhhHHhcCCcEEEEecCC-CceeccCCccc------chh---------hhhc-CchhHHHHhhcccceeEee
Confidence            9999999999998 669999999997 87776554322      211         1222 355677888888888888 


Q ss_pred             EEcCCC
Q 010933          407 FSHGVG  412 (497)
Q Consensus       407 w~~~~~  412 (497)
                      |....+
T Consensus       945 Whaldg  950 (1034)
T KOG4190|consen  945 WHALDG  950 (1034)
T ss_pred             ehhcCC
Confidence            887665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.00  E-value=1.9e-08  Score=83.86  Aligned_cols=149  Identities=13%  Similarity=0.079  Sum_probs=91.7

Q ss_pred             CCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-----CCCeEEEEEccCC
Q 010933          223 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQS  296 (497)
Q Consensus       223 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~v~d~~~~  296 (497)
                      +--++.++++ .||.+.+++.+...+....+      -..|.+. .+.+....+ +++.++.     .-+..+.|+++..
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i------~~~~~~~-as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~  169 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRI------PSIHSGS-ASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPI  169 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhc------ccccccc-cccceeecc-cEEecCCcceEeeccceeeeccccc
Confidence            3345567888 99999999987321111110      0111111 122222333 3343332     1234566666653


Q ss_pred             cccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEEec-CeEEEEecCCCCceeeeeeeccccccccccc
Q 010933          297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  374 (497)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  374 (497)
                      +......+.                 ...+.+++-+|..+. +++|++ |.+-+||.++...+...++.|+..+      
T Consensus       170 ~t~~~~~~~-----------------~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i------  226 (319)
T KOG4714|consen  170 KTLIPSKKA-----------------LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI------  226 (319)
T ss_pred             ccccccccc-----------------cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh------
Confidence            322100000                 134888999997654 555655 9999999998666677788888765      


Q ss_pred             CCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 010933          375 YNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~  411 (497)
                               +.+.|+| ++..|+++++||.+-.||..+
T Consensus       227 ---------~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  227 ---------WEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ---------hheeccCCCchheeEecCCCcEEEEcCCC
Confidence                     6899999 678999999999999999775

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=1.2e-06  Score=80.24  Aligned_cols=252  Identities=11%  Similarity=0.135  Sum_probs=138.0

Q ss_pred             EcCCCCEEEEeec----------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccC-ccccccccccc
Q 010933           40 FDKTGDYLAVGDR----------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYLKSLEI  108 (497)
Q Consensus        40 ~sp~g~~lasg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~  108 (497)
                      +||||+.|+++..          +..|.+||..+.+.                       +.++.--. +++.      .
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-----------------------~~~i~~p~~p~~~------~  103 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-----------------------IADIELPEGPRFL------V  103 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-----------------------EeEEccCCCchhh------c
Confidence            9999998877765          67999999998754                       22222111 0000      0


Q ss_pred             ccceeEEEEEecCCCCEEEEEe-C-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s-~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      -..-..+++  ++||++++... . +..|.+.|+.+++.......+...    .        ++............    
T Consensus       104 ~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~----~--------vy~t~e~~~~~~~~----  165 (352)
T TIGR02658       104 GTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY----H--------IFPTANDTFFMHCR----  165 (352)
T ss_pred             cCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc----E--------EEEecCCccEEEee----
Confidence            011235666  78999999775 3 799999999998876543332111    0        11110001111111    


Q ss_pred             ccCcceEEEeecCCccc--eeeeeeccCCCCCeeE-EEeCC-CCCEEEEEcCCeEEEEeCccCc----eeeEEeecCCCc
Q 010933          187 TENMATKIANVGNSVHA--RCQKVYPHAHDFNINS-ISNNS-DCETFVSADDLRINLWNLEISD----QCFNIVDMKPSN  258 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~  258 (497)
                        ++......++.....  .....+ .....++.. -.+.+ +|+.+..+.+|.|.+.|+...+    ....++......
T Consensus       166 --Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~  242 (352)
T TIGR02658       166 --DGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKA  242 (352)
T ss_pred             --cCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccc
Confidence              111111111111100  011111 111111100 03345 8888888855999999965222    122211000000


Q ss_pred             cCCCCCCeEEEEEeCCCCcEEEEEe----------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          259 MDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                      -.-....+.-++++|++ +.+++..          ..+.|.++|..+++.+    ..+..              ...+..
T Consensus       243 ~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~v--------------G~~~~~  303 (352)
T TIGR02658       243 DGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIEL--------------GHEIDS  303 (352)
T ss_pred             cccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeC--------------CCceee
Confidence            00022334459999999 6666632          1258999999998765    33332              146889


Q ss_pred             EEEeeCCC-EEEEEe--cCeEEEEecCCCCceeeee
Q 010933          329 IKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       329 ~~~s~~g~-~l~~~~--~~~i~lwd~~~~~~~~~~~  361 (497)
                      ++++||++ +|++..  .+.|.++|..+ ++.+.++
T Consensus       304 iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i  338 (352)
T TIGR02658       304 INVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV  338 (352)
T ss_pred             EEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence            99999999 777654  38899999987 8888877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.97  E-value=1e-06  Score=84.09  Aligned_cols=224  Identities=10%  Similarity=0.022  Sum_probs=108.7

Q ss_pred             CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933          227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  305 (497)
Q Consensus       227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  305 (497)
                      ..++.+ .++.++.||.+++....+. ........ .... .+....  + ..++.+..++.+..+|.++|+......  
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~~~~-~~~~-~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~--  217 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATGERLWTY-SRVTPALT-LRGS-ASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQR--  217 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCCceeeEE-ccCCCcee-ecCC-CCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeec--
Confidence            455566 8999999999844433322 11100000 0000 111122  2 357778889999999999987542110  


Q ss_pred             ecccccccCCccccccccccc-cEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCcccee
Q 010933          306 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  384 (497)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (497)
                      +.. ........    ....+ ....+ .++..++++.++.++.||.++ ++.+........                 .
T Consensus       218 ~~~-~~g~~~~~----~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~~-----------------~  273 (377)
T TIGR03300       218 VAL-PKGRTELE----RLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRS-GRVLWKRDASSY-----------------Q  273 (377)
T ss_pred             ccc-CCCCCchh----hhhccCCccEE-ECCEEEEEEcCCEEEEEECCC-CcEEEeeccCCc-----------------c
Confidence            000 00000000    00001 11122 234344444569999999986 776665542111                 1


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc-ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC
Q 010933          385 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG  460 (497)
Q Consensus       385 ~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~  460 (497)
                      ...  .++..|+.++.||.++.+|..+++.+ ........ ........    +     ..+.+++.+|. .++  .+++
T Consensus       274 ~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~~~~ssp~i~----g-----~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       274 GPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKYRQLTAPAVV----G-----GYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             Cce--EeCCEEEEECCCCeEEEEECCCCcEE-EccccccCCccccCEEE----C-----CEEEEEeCCCEEEEEECCCCC
Confidence            222  24667888899999999999988544 22211111 11111111    1     23677777777 666  2343


Q ss_pred             CcccccccCCCeEEEEEecCCCEEEEEe-CCceEEE
Q 010933          461 HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH  495 (497)
Q Consensus       461 ~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~  495 (497)
                      ......-+...+..--.-.+++ |.+++ ++.+|.|
T Consensus       342 ~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~  376 (377)
T TIGR03300       342 FVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence            3333322232222221222444 55555 5558776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=1.3e-07  Score=90.79  Aligned_cols=390  Identities=13%  Similarity=0.100  Sum_probs=210.9

Q ss_pred             CCcceEEEEEcCC------------CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc
Q 010933           31 DVDIVSAIEFDKT------------GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP   98 (497)
Q Consensus        31 h~~~I~~i~~sp~------------g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~   98 (497)
                      |...|+.+.|.|.            .-+||++...|.|.+||...+..                       +..++.|. 
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----------------------~~~l~~~~-  109 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----------------------INWLSHSN-  109 (1062)
T ss_pred             CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----------------------hhhhcCCC-
Confidence            7889999999873            12678888999999999977633                       55566777 


Q ss_pred             ccccccccccccceeEEEEEecCC-C-CEEEEEeCCccEEEeecCchheeccccCCCCCccc---------cccccccc-
Q 010933           99 EFDYLKSLEIEEKINRVRWCAAPN-G-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS---------SENTLLAE-  166 (497)
Q Consensus        99 ~~~~~~~~~~~~~i~~l~~~~s~~-~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-  166 (497)
                                 .+|.+++|.+..+ . ..|++-....++.+|+..+|+......+....-.|         .+...... 
T Consensus       110 -----------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen  110 -----------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             -----------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence                       8899999987544 3 35555577889999999888654433322211100         00000000 


Q ss_pred             ----------------cCccccCCC--------------------CCcccc--cccc--cc----------cCcceEEEe
Q 010933          167 ----------------KNFMNEHNP--------------------PSFAHG--YHLE--WT----------ENMATKIAN  196 (497)
Q Consensus       167 ----------------~~~~~~~~~--------------------~~~~~~--~~~~--~~----------~~~~~~~~~  196 (497)
                                      |..+.+...                    +...++  +++.  +.          =...+.+.|
T Consensus       179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d  258 (1062)
T KOG1912|consen  179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD  258 (1062)
T ss_pred             eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence                            111111100                    000000  0000  10          122444555


Q ss_pred             ecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCC-CccC--------CCCC
Q 010933          197 VGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMD--------DLTE  264 (497)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~--------~~~~  264 (497)
                      ++..   .|+.+. .-..+.+.-+.+-|++  ..|.+. .||.+.+|-.+......++-.... ..+.        -.+-
T Consensus       259 le~~---~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~  334 (1062)
T KOG1912|consen  259 LEYE---CCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF  334 (1062)
T ss_pred             chhh---ceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc
Confidence            5533   233332 2223444456666654  467777 999999997663221111100000 0000        0011


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc-------eeccccccc--C-----CccccccccccccEEE
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-------ILRDAAESH--G-----SKSFFTEIIASISDIK  330 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~~~~~~~~--~-----~~~~~~~~~~~i~~~~  330 (497)
                      .+......|..++.++.--.+|.+.+|.+++++.-.....       .|.......  .     ......+|.....+..
T Consensus       335 rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~  414 (1062)
T KOG1912|consen  335 RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVR  414 (1062)
T ss_pred             ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeee
Confidence            1222333454335566666788999999987653211000       000000000  0     0000124444444444


Q ss_pred             Eee-----------CC-------CEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933          331 FAN-----------DG-------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       331 ~s~-----------~g-------~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                      ..|           .|       .++|.|+. |+|-++|+.+ +.....+..|...+               .++.|-..
T Consensus       415 ~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst-~~v~~~fsvht~~V---------------kgleW~g~  478 (1062)
T KOG1912|consen  415 MRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST-NAVAASFSVHTSLV---------------KGLEWLGN  478 (1062)
T ss_pred             cccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc-hhhhhhhcccccce---------------eeeeeccc
Confidence            332           22       24566866 9999999987 88888888888765               46666655


Q ss_pred             CCEE---------EEEeCCCcEEEEEcCCCCcceEE--EeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC-
Q 010933          392 GLHF---------ATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-  458 (497)
Q Consensus       392 ~~~l---------~s~~~dg~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~-  458 (497)
                      .+++         ++|+.-+.+.|-|+++|-.....  -+....||+.+..+.  -+++     ++....+.- .+|.. 
T Consensus       479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~--~~~y-----Lai~Fr~~plEiwd~k  551 (1062)
T KOG1912|consen  479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS--SGRY-----LAILFRREPLEIWDLK  551 (1062)
T ss_pred             eeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc--cCce-----EEEEecccchHHHhhc
Confidence            4433         24445567889999998543222  234457888888887  6777     899988888 99933 


Q ss_pred             CCCcccccccCCC-eEEEEEe-cCCC
Q 010933          459 SGHHELSYNLSSK-LLHLAWH-PTTN  482 (497)
Q Consensus       459 ~~~~~~~~~~~~~-i~~l~~~-p~~~  482 (497)
                      ...........=+ |+.+.|+ |.-+
T Consensus       552 t~~~lr~mS~a~P~it~leWsl~~~~  577 (1062)
T KOG1912|consen  552 TLRMLRLMSLALPLITVLEWSLPKHP  577 (1062)
T ss_pred             cchHHHHHhhcCCcEEEEeecccCCC
Confidence            2222222223335 8999998 4433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=4.3e-07  Score=86.65  Aligned_cols=150  Identities=11%  Similarity=0.089  Sum_probs=89.4

Q ss_pred             CCCeeEEEeCCCCCEEEEE--c--CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CC--
Q 010933          214 DFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--  286 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--  286 (497)
                      ........|+|||+.++..  .  +..|+++|+. ++....        +..+........|+|+| +.|+..+. .+  
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~--------LT~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~  301 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ--------ITNYPGIDVNGNFVEDD-KRIVFVSDRLGYP  301 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE--------cccCCCccCccEECCCC-CEEEEEECCCCCc
Confidence            4445567899999988753  2  4578888877 444333        22222223455899999 66666654 33  


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----------CeEEEEecCCCCc
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------MNLKLWDIRMDST  356 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----------~~i~lwd~~~~~~  356 (497)
                      .|.+.|+.+++..    +....               +. ....|+|||++|+....          ..|.+.|+.. +.
T Consensus       302 ~Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~  360 (419)
T PRK04043        302 NIFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY  360 (419)
T ss_pred             eEEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence            6777788776532    11111               11 12489999998876421          2677888864 43


Q ss_pred             eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-C--cEEEEEcCC
Q 010933          357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGV  411 (497)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g--~i~vw~~~~  411 (497)
                       ...+......                ....|+|||+.|+..+.+ +  .+.+.+++.
T Consensus       361 -~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        361 -IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             -eEECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence             3333322111                258999999988765543 3  355566643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=1.1e-08  Score=97.19  Aligned_cols=239  Identities=15%  Similarity=0.157  Sum_probs=156.4

Q ss_pred             eeEEEeCCCC--CEEEEE-cCCeEEEEeCcc-CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          217 INSISNNSDC--ETFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       217 v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      |-...|+|..  .+-+.. ....-.+|++.. ..+.+..+      +-+|...|+.+-|+|..+..+++++.|-.+..||
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd  143 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD  143 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE------EecCccceeccccCCCCCcceeeccccccceeee
Confidence            4445565532  233333 666677888753 22344433      6789999999999999988999999999999999


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL  371 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~  371 (497)
                      +++..........+                ......++|+- ++..+|+...+.|++||++.++.++..+++|...+   
T Consensus       144 ~rSp~~p~ys~~~w----------------~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v---  204 (1081)
T KOG0309|consen  144 MRSPHRPFYSTSSW----------------RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV---  204 (1081)
T ss_pred             ccCCCcceeeeecc----------------cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee---
Confidence            99864321111111                23567888986 45556655558999999999889999999976643   


Q ss_pred             cccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEee-
Q 010933          372 CDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-  449 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-  449 (497)
                                  ..++|..- ...+.+.+.||+|+.||.+..............+++.-.+.|-.++..   .....|+ 
T Consensus       205 ------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~---~mp~~G~n  269 (1081)
T KOG0309|consen  205 ------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC---IMPMVGGN  269 (1081)
T ss_pred             ------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE---eccccCCe
Confidence                        45666542 346789999999999999877665555666677888888777545432   0011111 


Q ss_pred             ------ccCc-eec---CCCCCcccccccCCCeEEEEEecCCC----------EEEEEe-CCceEEE
Q 010933          450 ------YRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACAN-GNSLFFH  495 (497)
Q Consensus       450 ------~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~----------~la~~~-~~~~~i~  495 (497)
                            .+.. ..|   .....+....+|+..|...-|-..+.          .|++=+ +..+.+|
T Consensus       270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence                  1111 334   23345666778888887777755443          355544 4446666

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.90  E-value=2.5e-08  Score=85.29  Aligned_cols=243  Identities=13%  Similarity=0.099  Sum_probs=147.6

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC------------CCeEEEEEeCC-CCcE
Q 010933          213 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT------------EVITSAEFHPI-YCNL  278 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~-~~~~  278 (497)
                      ....|+++.|...|.++++| ..|.|.+|..+....+-..+-   ..++.|+            ..|..+.|..+ +...
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~---teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFF---TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhh---hhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            34578999999999999999 899999998763332211000   1133342            56778887644 4567


Q ss_pred             EEEEeCCCeEEEEEccCCcccccccce-----------------------eccccc--ccCCcc-ccccccccccEEEEe
Q 010933          279 LAYSSSRGFVRLVDMRQSALCDHSARI-----------------------LRDAAE--SHGSKS-FFTEIIASISDIKFA  332 (497)
Q Consensus       279 l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------------------~~~~~~--~~~~~~-~~~~~~~~i~~~~~s  332 (497)
                      ++..+.|.+|++|-+....+.......                       +..|..  ...+.. .-..|.--|++++|+
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            888899999999999875321100000                       000000  001111 125677889999999


Q ss_pred             eCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q 010933          333 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       333 ~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~  411 (497)
                      .|.+.+++++|=.|.+|++...................        -..-|++..|+|.. ..+...+..|.|++-|++.
T Consensus       182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmee--------LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEE--------LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             CchheeeeccceeeeeccccccCCceEEEeccCccHHH--------HHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            99999999999999999987544333332222111100        01113689999964 4566777789999999985


Q ss_pred             CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933          412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  491 (497)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~  491 (497)
                      ....               -.+..         +.--..|+.       ...-..+....|.++.|++.|+++++-+...
T Consensus       254 ~alc---------------dn~~k---------lfe~~~D~v-------~~~ff~eivsSISD~kFs~ngryIlsRdylt  302 (460)
T COG5170         254 SALC---------------DNSKK---------LFELTIDGV-------DVDFFEEIVSSISDFKFSDNGRYILSRDYLT  302 (460)
T ss_pred             hhhc---------------cCchh---------hhhhccCcc-------cchhHHHHhhhhcceEEcCCCcEEEEeccce
Confidence            4211               11100         000000000       0111223345888999999999999999999


Q ss_pred             eEEEeC
Q 010933          492 LFFHYA  497 (497)
Q Consensus       492 ~~i~~~  497 (497)
                      +.||.+
T Consensus       303 vkiwDv  308 (460)
T COG5170         303 VKIWDV  308 (460)
T ss_pred             EEEEec
Confidence            999963

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.88  E-value=1.2e-08  Score=106.01  Aligned_cols=186  Identities=17%  Similarity=0.215  Sum_probs=137.9

Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.++.-  .|...+.++|+.||.|++|....++...                                           
T Consensus      2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~------------------------------------------- 2244 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVV------------------------------------------- 2244 (2439)
T ss_pred             ceeeecC--CCCCceEEecCCCceEEEEeccCCCeEE-------------------------------------------
Confidence            3445544  4666789999999999999987665322                                           


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                         .|+              ..-...|+.+.|+.+|+.+..+ .||.+.+|.+.  .+.+.       ..+.|......+
T Consensus      2245 ---~~r--------------t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~-------s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2245 ---CFR--------------TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYT-------SWQCHNKALSDF 2298 (2439)
T ss_pred             ---Eee--------------ccCcchhhhhhhcccCCceeeeccCCceeecccC--Cccee-------ccccCCccccce
Confidence               222              1223788889999999999999 99999999987  33332       267888888888


Q ss_pred             EEeCCCCcEEEEEeC---CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933          270 EFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  345 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~  345 (497)
                      .|-.   ..+++++.   ++.+.+||..-.....   -+.             ..|.+.++++++-|..++|++|+. |.
T Consensus      2299 ~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s---~v~-------------~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2299 RFIG---SLLATAGRSSDNRNVCLWDTLLPPMNS---LVH-------------TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             eeee---hhhhccccCCCCCcccchhcccCcccc---eee-------------eecCCCceEEEEcCcceEEEecCCcCc
Confidence            8876   34666643   7899999975432110   111             346789999999999999999865 99


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      |++||++. .+++..++.                        +. ...++++|+..|.|+||++..-
T Consensus      2360 v~l~D~rq-rql~h~~~~------------------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2360 VCLFDIRQ-RQLRHTFQA------------------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EEEeehHH-HHHHHHhhh------------------------hh-hhheeeccCcccceEEEEcccc
Confidence            99999986 666655542                        22 4568999999999999999876

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.87  E-value=1.7e-06  Score=73.92  Aligned_cols=235  Identities=14%  Similarity=0.171  Sum_probs=130.5

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      .++.+++|+.||.-. |..|-|-...+.-.                     ..+...+-.+..         ...-..++
T Consensus         2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~---------------------si~~kcqVpkD~---------~PQWRkl~   50 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFS---------------------SIIGKCQVPKDP---------NPQWRKLA   50 (282)
T ss_pred             ceeecCCCcEEEEEe-ccEEEEEeccCCch---------------------heeEEEecCCCC---------CchheEEE
Confidence            367789999888764 66777766544211                     011111111100         03356799


Q ss_pred             EEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEe
Q 010933          117 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN  196 (497)
Q Consensus       117 ~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (497)
                      |  +||+..||.+...|+|+++|+.+..+-.+.....                    ..                     
T Consensus        51 W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~--------------------~~---------------------   87 (282)
T PF15492_consen   51 W--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS--------------------FP---------------------   87 (282)
T ss_pred             E--CCCCcEEEEEcCCCeEEEEecccceeEEcCcccc--------------------cC---------------------
Confidence            9  7999999999999999999998755332211000                    00                     


Q ss_pred             ecCCccceeeeeeccCCCCCeeEEEeCC-------CCCEEEEEcCCeEEEEeCcc--Cc--eeeEEeecCCCcc-CCCCC
Q 010933          197 VGNSVHARCQKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI--SD--QCFNIVDMKPSNM-DDLTE  264 (497)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~l~~~~d~~i~iwd~~~--~~--~~~~~~~~~~~~~-~~~~~  264 (497)
                                    ..-...|..+.|.+       ..++|+...+|.++-|-+..  .+  +....+     .+ ..+..
T Consensus        88 --------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf-----sf~~~yp~  148 (282)
T PF15492_consen   88 --------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF-----SFSSHYPH  148 (282)
T ss_pred             --------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE-----EecccCCC
Confidence                          01112333333321       12355555777777776531  11  111111     12 23467


Q ss_pred             CeEEEEEeCCCCcEEEEEeCC-C----------eEEEEEccCCcccccccceecccccccC---------Cccc---ccc
Q 010933          265 VITSAEFHPIYCNLLAYSSSR-G----------FVRLVDMRQSALCDHSARILRDAAESHG---------SKSF---FTE  321 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~d-g----------~i~v~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~  321 (497)
                      .|.++.++|.. ++|++|+.. .          -+.-|.+-++..-.+.....+.......         ....   ...
T Consensus       149 Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~  227 (282)
T PF15492_consen  149 GINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ  227 (282)
T ss_pred             ceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence            89999999998 777777542 1          2555655444322211111111010000         0000   122


Q ss_pred             ccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933          322 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       322 ~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      ....|..|.+||||++||+.. .|.|.+|++.. -+....++-++.
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~eq  272 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDEQ  272 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhcccchhhC
Confidence            357899999999999999985 49999999975 566666654443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.86  E-value=3.6e-06  Score=77.28  Aligned_cols=263  Identities=11%  Similarity=0.080  Sum_probs=157.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      -++..++|  +|.|.+|++....+ |.+|.-.....                                            
T Consensus        33 ~p~~~~~~--SP~G~~l~~~~~~~-V~~~~g~~~~~--------------------------------------------   65 (561)
T COG5354          33 WPVAYVSE--SPLGTYLFSEHAAG-VECWGGPSKAK--------------------------------------------   65 (561)
T ss_pred             cchhheee--cCcchheehhhccc-eEEccccchhh--------------------------------------------
Confidence            66888999  78998888877654 88887665441                                            


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c---------------CCeEEEEeCccCceeeEEee
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVD  253 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~  253 (497)
                                     +++.   . ...|..+.|+|.+++|.+= .               +..+.+||+. ++..+..+ 
T Consensus        66 ---------------l~~~---~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-sg~iv~sf-  124 (561)
T COG5354          66 ---------------LVRF---R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-SGMIVFSF-  124 (561)
T ss_pred             ---------------eeee---e-cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-CceeEeec-
Confidence                           1111   1 2357778888888888762 1               2358999999 56555442 


Q ss_pred             cCCCccCCCCCC--eE-EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933          254 MKPSNMDDLTEV--IT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       254 ~~~~~~~~~~~~--i~-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                            .....+  .. -+.|+-+. +++|-. ....++|+++ ++.......+.+..               ..|....
T Consensus       125 ------~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~---------------~gi~dFs  180 (561)
T COG5354         125 ------NGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP---------------VGILDFS  180 (561)
T ss_pred             ------cccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhccc---------------cceeeEE
Confidence                  222222  33 56788776 665544 4457999998 54433222233322               4688888


Q ss_pred             EeeCCC--EEEE------EecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe---
Q 010933          331 FANDGQ--HLLS------RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---  399 (497)
Q Consensus       331 ~s~~g~--~l~~------~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---  399 (497)
                      |+|.|+  -|+.      +..+.+++|.+.. ++.+.+..-....           .    ..+.|.+.|++|+.--   
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~lfk~~-----------~----~qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKNLFKVS-----------G----VQLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccC-CCeeeeeeeEeec-----------c----cEEEEecCCceEEEEEEEe
Confidence            998643  3443      2238999999975 5554443322211           0    3799999999876321   


Q ss_pred             --------CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCC
Q 010933          400 --------YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSS  470 (497)
Q Consensus       400 --------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~  470 (497)
                              .+.+++|+++... .+ .....-.++|...+|.|..+...     +++|-.+.. .++..... .......+
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~-~i-~V~~~~~~pVhdf~W~p~S~~F~-----vi~g~~pa~~s~~~lr~N-l~~~~Pe~  316 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITER-SI-PVEKDLKDPVHDFTWEPLSSRFA-----VISGYMPASVSVFDLRGN-LRFYFPEQ  316 (561)
T ss_pred             eecccceeccceEEEEeeccc-cc-ceeccccccceeeeecccCCcee-----EEecccccceeecccccc-eEEecCCc
Confidence                    1356889998733 22 22226689999999998644333     445444444 44422222 11223333


Q ss_pred             CeEEEEEecCCCEEEEEe
Q 010933          471 KLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       471 ~i~~l~~~p~~~~la~~~  488 (497)
                      +=+-+.|+|.+++++.++
T Consensus       317 ~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         317 KRNTIFFSPHERYILFAG  334 (561)
T ss_pred             ccccccccCcccEEEEec
Confidence            444566777777766665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=8.5e-07  Score=85.30  Aligned_cols=258  Identities=16%  Similarity=0.179  Sum_probs=165.0

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...-.+++|+|.| +||.|+.. .|.+-|..+-                       +.+..+.-|.            ..
T Consensus        15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~-----------------------q~iqsie~h~------------s~   57 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSL-----------------------QLIQSIELHQ------------SA   57 (1062)
T ss_pred             cccccccccCccc-eEEEecCc-eEEEEehhhh-----------------------hhhhccccCc------------cc
Confidence            3447889999987 78888764 7888887653                       4477777888            88


Q ss_pred             eeEEEEEecC--------C--CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933          112 INRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  181 (497)
Q Consensus       112 i~~l~~~~s~--------~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (497)
                      |+.++|.|-|        .  .-.++++...|.|.+||+..+..+..                                 
T Consensus        58 V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~---------------------------------  104 (1062)
T KOG1912|consen   58 VTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW---------------------------------  104 (1062)
T ss_pred             eeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh---------------------------------
Confidence            9999998622        1  12355556779999999987653321                                 


Q ss_pred             cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCC-EEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933          182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKP  256 (497)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  256 (497)
                                                  +..|..++..++|-+   +.+ .|++- ....+.+|+..++++..+      
T Consensus       105 ----------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk------  150 (1062)
T KOG1912|consen  105 ----------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK------  150 (1062)
T ss_pred             ----------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec------
Confidence                                        256777888888854   343 34444 788999999996666554      


Q ss_pred             CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc---eecccccccCC-------ccccccc----
Q 010933          257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAESHGS-------KSFFTEI----  322 (497)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~----  322 (497)
                        .........++.++|-.++.+..-+..|.+.+.+.-.........+   +-..|.+.+..       .......    
T Consensus       151 --~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~  228 (1062)
T KOG1912|consen  151 --YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY  228 (1062)
T ss_pred             --cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence              2333456677899987667777777788877776543222211111   11221110000       0000000    


Q ss_pred             -cccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC--CEEEEE
Q 010933          323 -IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHFATG  398 (497)
Q Consensus       323 -~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~s~  398 (497)
                       .......+|+|.-+.++.... ..+.++|++- ..++.......+.+               --+.|-|++  ..|+++
T Consensus       229 fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~Lfcl  292 (1062)
T KOG1912|consen  229 FITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDALFCL  292 (1062)
T ss_pred             HHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcceEEEE
Confidence             001234677887665555544 8999999986 77777777666543               236777764  579999


Q ss_pred             eCCCcEEEEEcCC
Q 010933          399 SYSNLLRIFSHGV  411 (497)
Q Consensus       399 ~~dg~i~vw~~~~  411 (497)
                      ..||.+.+|-.+.
T Consensus       293 H~nG~ltirvrk~  305 (1062)
T KOG1912|consen  293 HSNGRLTIRVRKE  305 (1062)
T ss_pred             ecCCeEEEEEeec
Confidence            9999999998665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.82  E-value=9.1e-08  Score=79.90  Aligned_cols=142  Identities=12%  Similarity=0.060  Sum_probs=90.9

Q ss_pred             CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc---------cCcceE
Q 010933          123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT---------ENMATK  193 (497)
Q Consensus       123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  193 (497)
                      +..++++..||.+.+.+.+.-. ....                 ..+.......+.+++..+.+.         .-+...
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~-~~~~-----------------~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDL-ALMS-----------------RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             CCceEecCCCceEEEEechHHH-hhhh-----------------hcccccccccccceeecccEEecCCcceEeecccee
Confidence            4578999999999999887621 1110                 011112222223333222221         122344


Q ss_pred             EEeecCCccceeeeeeccCC--CCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          194 IANVGNSVHARCQKVYPHAH--DFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                      .|+..      ++.++...+  ...|.+++-+|..+.+ ++| .||.+-+||.+......       ..+..|+..|..+
T Consensus       163 a~~~~------p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV  229 (319)
T KOG4714|consen  163 ANTLD------PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEV  229 (319)
T ss_pred             eeccc------ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhhe
Confidence            45444      333332222  3348889999865555 556 99999999999432222       2378899999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      -|+|..+..|+++++||.+--||..+
T Consensus       230 ~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  230 HFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eccCCCchheeEecCCCcEEEEcCCC
Confidence            99998888999999999999999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.81  E-value=8.6e-06  Score=69.75  Aligned_cols=183  Identities=20%  Similarity=0.184  Sum_probs=109.7

Q ss_pred             CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC-----CcEEEEEeCCCeEE
Q 010933          216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----CNLLAYSSSRGFVR  289 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~i~  289 (497)
                      .-.-++|+||+..||.+ ..|+|++||+. +.....+ .............|..+.|.+..     +..|++-..+|.++
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I-~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVI-PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEc-CcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            34579999999999999 99999999998 4444432 21111122234667777775432     23677778888888


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c--C---------eEEEEecCCCCce
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--M---------NLKLWDIRMDSTP  357 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--~---------~i~lwd~~~~~~~  357 (497)
                      =|-+..+...    ...+.|..     .....+...|.++.++|..++|+.|+ .  .         -+.-|.+-.+...
T Consensus       123 Sy~vs~gt~q----~y~e~hsf-----sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py  193 (282)
T PF15492_consen  123 SYLVSVGTNQ----GYQENHSF-----SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY  193 (282)
T ss_pred             eEEEEcccCC----cceeeEEE-----EecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc
Confidence            7776433211    11111111     11122356899999999988887753 1  1         3567776542211


Q ss_pred             eeeeeecccccc---------cccc------cC-CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          358 VATFKIHEHLRP---------KLCD------LY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       358 ~~~~~~~~~~~~---------~~~~------~~-~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      .+.....+..+.         .+..      .+ +.+.+   ..|..||||+.||+...+|.|.+|++.+-
T Consensus       194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             EEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            111111111110         0000      01 12333   59999999999999999999999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=4.5e-08  Score=90.16  Aligned_cols=178  Identities=13%  Similarity=0.163  Sum_probs=118.3

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|.+++--.+.+-+++++.|.+|++|.+....-                ......+.-+++.|+           
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------------~~~tsaCQfTY~aHk-----------  784 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------------EIGTSACQFTYQAHK-----------  784 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------------ccccceeeeEhhhcc-----------
Confidence            46888898888777778889999999999999864211                011223456778898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       .+|.++.|.  .+.+++  ++.|+.|.+||.--+......                                       
T Consensus       785 -k~i~~igfL--~~lr~i--~ScD~giHlWDPFigr~Laq~---------------------------------------  820 (1034)
T KOG4190|consen  785 -KPIHDIGFL--ADLRSI--ASCDGGIHLWDPFIGRLLAQM---------------------------------------  820 (1034)
T ss_pred             -Ccccceeee--ecccee--eeccCcceeecccccchhHhh---------------------------------------
Confidence             889999995  454454  456789999998766533210                                       


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                           .|+..            .+....|.++. +-+...+++ + ...+|+++|.+..+- ...+.+  -.-.+....+
T Consensus       821 -----~dapk------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kV--cna~~Pna~~  879 (1034)
T KOG4190|consen  821 -----EDAPK------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW-TCELKV--CNAPGPNALT  879 (1034)
T ss_pred             -----hcCcc------------cCCCceeEecc-cCcchheeeeccchhhheeeecccccc-eeeEEe--ccCCCCchhe
Confidence                 01100            12223333332 112333433 4 789999999884332 211111  1234566788


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  299 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  299 (497)
                      +++++.+.| +.++.+-.+|.|.+.|.|+|+.+
T Consensus       880 R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  880 RAIAVADKG-NKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             eEEEeccCc-chhhHHhcCCcEEEEecCCCcee
Confidence            999999999 99999999999999999999755

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=3.3e-06  Score=89.76  Aligned_cols=133  Identities=9%  Similarity=0.117  Sum_probs=81.8

Q ss_pred             CeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCC---C---ccC--------CCCCCeEEEEEeCCCCcEE
Q 010933          216 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP---S---NMD--------DLTEVITSAEFHPIYCNLL  279 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~---~---~~~--------~~~~~i~~~~~~~~~~~~l  279 (497)
                      ....++++|+++.|+.+  .++.|++||+...+... .....+   .   .+.        ..-.....++++++| .++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LY  818 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIY  818 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEE
Confidence            45679999999866554  78999999988433211 100000   0   000        011234689999999 888


Q ss_pred             EEEeCCCeEEEEEccCCcccccccceeccccc-ccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCc
Q 010933          280 AYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  356 (497)
Q Consensus       280 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~  356 (497)
                      ++-+.++.|++||..++...    ..... .. .........+.-.....++++++|+++++-+ ++.|++||+.+ ++
T Consensus       819 VADs~N~rIrviD~~tg~v~----tiaG~-G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~-~~  891 (1057)
T PLN02919        819 VADSYNHKIKKLDPATKRVT----TLAGT-GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK-GE  891 (1057)
T ss_pred             EEECCCCEEEEEECCCCeEE----EEecc-CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC-Cc
Confidence            88888999999999876532    11110 00 0000001112223567899999999777654 49999999986 44

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.76  E-value=1.7e-05  Score=70.61  Aligned_cols=226  Identities=14%  Similarity=0.135  Sum_probs=135.8

Q ss_pred             EEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        37 ~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      ++.|.+ +|.++.+--..+.|..|+..++..                        ..+..              .....+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~------------------------~~~~~--------------~~~~G~   45 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV------------------------EVIDL--------------PGPNGM   45 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE------------------------EEEES--------------SSEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE------------------------EEEec--------------CCCceE
Confidence            578888 677777766789999999877642                        11111              225677


Q ss_pred             EEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933          116 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  195 (497)
Q Consensus       116 ~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (497)
                      ++. .++ ..|+.+..++ +.++|..+++...+.....                                          
T Consensus        46 ~~~-~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~------------------------------------------   80 (246)
T PF08450_consen   46 AFD-RPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD------------------------------------------   80 (246)
T ss_dssp             EEE-CTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET------------------------------------------
T ss_pred             EEE-ccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC------------------------------------------
Confidence            773 145 5566666554 4555888776544321100                                          


Q ss_pred             eecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-cC--------CeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          196 NVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       196 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                     .. .....+.+++.++|++.++. ..        +.|..++..  ++....        ...-..
T Consensus        81 ---------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~~~~  135 (246)
T PF08450_consen   81 ---------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADGLGF  135 (246)
T ss_dssp             ---------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEEESS
T ss_pred             ---------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecCccc
Confidence                           11 34467899999999977774 22        557777766  332222        122345


Q ss_pred             eEEEEEeCCCCcEEE-EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933          266 ITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  343 (497)
Q Consensus       266 i~~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~  343 (497)
                      ...++|+|++ +.|+ +-+..+.|..+++..........+.+..          +....+..-.+++..+|++.++.- .
T Consensus       136 pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  136 PNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred             ccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEEcCC
Confidence            6899999999 6555 5567889999998743321111122211          000112467899999998777764 4


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEE
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATG  398 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~  398 (497)
                      +.|.+++.+  ++.+..+.......               ++++|. ++.+.|+..
T Consensus       205 ~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  205 GRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEEE
T ss_pred             CEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEEE
Confidence            999999986  78888777663321               689994 666666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.74  E-value=8.4e-06  Score=77.79  Aligned_cols=275  Identities=13%  Similarity=0.099  Sum_probs=143.1

Q ss_pred             CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC
Q 010933           43 TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN  122 (497)
Q Consensus        43 ~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~  122 (497)
                      .+..+++++.+|.|.-+|..+++.                     .....+.+.-              ......    +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~---------------------~W~~~~~~~~--------------~~~p~v----~  104 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKR---------------------LWRVDLDERL--------------SGGVGA----D  104 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcE---------------------eeeecCCCCc--------------ccceEE----c
Confidence            466888889999999999988887                     1111122111              112234    1


Q ss_pred             CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933          123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  202 (497)
Q Consensus       123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (497)
                      +..++.++.++.+..+|..+|+..............   ....++.           +++.   ..++.+..+|....  
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---p~v~~~~-----------v~v~---~~~g~l~a~d~~tG--  165 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP---PLVANGL-----------VVVR---TNDGRLTALDAATG--  165 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC---CEEECCE-----------EEEE---CCCCeEEEEEcCCC--
Confidence            346777778888888888877765544433332100   0000111           1111   01445555555422  


Q ss_pred             ceeeeeeccCCCCCe-----eEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC--CC---e-EEEE
Q 010933          203 ARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAE  270 (497)
Q Consensus       203 ~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---i-~~~~  270 (497)
                       +.+..+ ......+     .+...  .+..++.+ .++.+..+|.+++...... ...  ...+..  ..   + ....
T Consensus       166 -~~~W~~-~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~-~~~--~~~g~~~~~~~~~~~~~p~  238 (377)
T TIGR03300       166 -ERLWTY-SRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ-RVA--LPKGRTELERLVDVDGDPV  238 (377)
T ss_pred             -ceeeEE-ccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee-ccc--cCCCCCchhhhhccCCccE
Confidence             111111 1100000     01111  12356677 8899999998844433221 000  000000  00   0 1111


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lw  349 (497)
                      +.  + ..+++++.+|.++.+|.++++..      +.. ..            ........  ++..++.+ .+|.+..+
T Consensus       239 ~~--~-~~vy~~~~~g~l~a~d~~tG~~~------W~~-~~------------~~~~~p~~--~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       239 VD--G-GQVYAVSYQGRVAALDLRSGRVL------WKR-DA------------SSYQGPAV--DDNRLYVTDADGVVVAL  294 (377)
T ss_pred             EE--C-CEEEEEEcCCEEEEEECCCCcEE------Eee-cc------------CCccCceE--eCCEEEEECCCCeEEEE
Confidence            22  3 56778888999999999988644      222 00            11122222  34455555 56999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      |..+ ++.+..........            .  .....  .+..|++++.+|.|+++|..+++.+ ..++.+..
T Consensus       295 d~~t-G~~~W~~~~~~~~~------------~--ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~~~~  351 (377)
T TIGR03300       295 DRRS-GSELWKNDELKYRQ------------L--TAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKTDGS  351 (377)
T ss_pred             ECCC-CcEEEccccccCCc------------c--ccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCC
Confidence            9986 77665543211110            0  12222  4668999999999999999988554 56655544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.72  E-value=1.8e-05  Score=69.96  Aligned_cols=234  Identities=15%  Similarity=0.202  Sum_probs=135.9

Q ss_pred             eEEEEEcC-CCCEEEEeecCC-eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           35 VSAIEFDK-TGDYLAVGDRGG-RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        35 I~~i~~sp-~g~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      -..++.+| .+..+|.+-.-| ...+||..+++.....               ....-..|-||-               
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~---------------~a~~gRHFyGHg---------------   56 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL---------------WAPPGRHFYGHG---------------   56 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE---------------cCCCCCEEecCE---------------
Confidence            34678888 566777777665 4678999887641000               001123355564               


Q ss_pred             eEEEEEecCCCCEEEEEe-----CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          113 NRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                         .|  ++||++|++.-     ..|.|-|||...+- .++                                       
T Consensus        57 ---~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~~-~ri---------------------------------------   91 (305)
T PF07433_consen   57 ---VF--SPDGRLLYTTENDYETGRGVIGVYDAARGY-RRI---------------------------------------   91 (305)
T ss_pred             ---EE--cCCCCEEEEeccccCCCcEEEEEEECcCCc-EEE---------------------------------------
Confidence               67  78999999974     34888999987322 111                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcC--------CeEE-----------EEeCccCcee
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LRIN-----------LWNLEISDQC  248 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d--------~~i~-----------iwd~~~~~~~  248 (497)
                                         ..+ ..|.-.-..+.+.|||+.|+.+..        |..+           +.|.. ++..
T Consensus        92 -------------------~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~l  150 (305)
T PF07433_consen   92 -------------------GEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGAL  150 (305)
T ss_pred             -------------------eEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCce
Confidence                               111 333333445778888877776421        2222           33333 2333


Q ss_pred             eEEeecCCCcc--CCCCCCeEEEEEeCCCCcEEEEEeCCC-------eEEEEEccCCcccccccceecccccccCCcccc
Q 010933          249 FNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSFF  319 (497)
Q Consensus       249 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (497)
                      +..+     .+  ..|...|+.++++++| ..++..-..|       .|-+++.  ++..    ..+..      +....
T Consensus       151 l~q~-----~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~--g~~~----~~~~~------p~~~~  212 (305)
T PF07433_consen  151 LEQV-----ELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRR--GGAL----RLLPA------PEEQW  212 (305)
T ss_pred             eeee-----ecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcC--CCcc----eeccC------ChHHH
Confidence            3322     24  4477899999999998 5444433322       1223322  2111    11111      00001


Q ss_pred             ccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933          320 TEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  397 (497)
Q Consensus       320 ~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  397 (497)
                      ..-.+.+-+|++++++.++++.+-  +.+.+||..+ ++.+........                 ..++-.+++ ++++
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f~~s  273 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-FLVS  273 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-eEEe
Confidence            122367899999999998887653  9999999986 887777665543                 367776666 6666


Q ss_pred             EeCC
Q 010933          398 GSYS  401 (497)
Q Consensus       398 ~~~d  401 (497)
                      .+..
T Consensus       274 sG~G  277 (305)
T PF07433_consen  274 SGQG  277 (305)
T ss_pred             CCCc
Confidence            5553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.71  E-value=5.9e-05  Score=67.18  Aligned_cols=178  Identities=15%  Similarity=0.143  Sum_probs=105.2

Q ss_pred             eeEEEeC-CCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCC-CCCCeEEEEEeCCCCcEEEEEeCC--------C
Q 010933          217 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G  286 (497)
Q Consensus       217 v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g  286 (497)
                      ...+.+. +++.++++.. +.+.++|.. .++...+....   ... .......++++|+| ++.++....        |
T Consensus        42 ~~G~~~~~~~g~l~v~~~-~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADS-GGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTTSEEEEEET-TCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccCCEEEEEEc-CceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence            5667777 6654444444 444555887 44444332211   012 34667899999999 766665543        5


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceee---ee
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA---TF  361 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~---~~  361 (497)
                      .|..++.. ++..    .....              -...+.++|+|+++.|+.++ . +.|..|++...+..+.   .+
T Consensus       116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~  176 (246)
T PF08450_consen  116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF  176 (246)
T ss_dssp             EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred             ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence            57777776 3321    22222              13468999999999887764 3 8899999864333121   12


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      ........            ..-.+++..+|++.++.-..+.|.+++.+ ++. ...+......+.+++|..
T Consensus       177 ~~~~~~~g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fgg  234 (246)
T PF08450_consen  177 IDFPGGPG------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL-LREIELPVPRPTNCAFGG  234 (246)
T ss_dssp             EE-SSSSC------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-EEEEE-SSSSEEEEEEES
T ss_pred             EEcCCCCc------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-EEEEcCCCCCEEEEEEEC
Confidence            11111000            01479999999988888889999999977 543 355554444677777753

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=8.3e-06  Score=79.74  Aligned_cols=242  Identities=14%  Similarity=0.173  Sum_probs=141.6

Q ss_pred             cchhhhhcCCCCCCCcccCCc-ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933           13 EWKCSQAFGERNPDEELQDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT   91 (497)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~-~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (497)
                      .|+--+.|....-.++-.-.+ .|+|  |++.+..+|.|+.+|.|.+.+-.-                        ..+.
T Consensus         5 qWrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~s~------------------------~~~~   58 (933)
T KOG2114|consen    5 QWRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNSSF------------------------QLIR   58 (933)
T ss_pred             hcceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecccc------------------------eeee
Confidence            455445554433321111123 5655  458888999999999998887532                        3456


Q ss_pred             cccccCcccccccccccccc-eeEEEEEecCCCCEEEEEeCCc-----cEEEeecCchheeccccCCCCCcccccccccc
Q 010933           92 EFQSHEPEFDYLKSLEIEEK-INRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  165 (497)
Q Consensus        92 ~~~~h~~~~~~~~~~~~~~~-i~~l~~~~s~~~~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (497)
                      .+++++            .. |..+..  ..+..+|++.+.|+     .+++|+++.-+....      +.         
T Consensus        59 ~fqa~~------------~siv~~L~~--~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s------P~---------  109 (933)
T KOG2114|consen   59 GFQAYE------------QSIVQFLYI--LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS------PQ---------  109 (933)
T ss_pred             hheecc------------hhhhhHhhc--ccCceEEEEEeecCCCCceEEEEecccccCCCCC------cc---------
Confidence            788887            44 333332  12234777777664     588999875431000      00         


Q ss_pred             ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc
Q 010933          166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  244 (497)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  244 (497)
                         .                   -+..+++...           +.....++.+++++.+-+.+|+| .+|.|..+.-+.
T Consensus       110 ---c-------------------~~~~ri~~~~-----------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen  110 ---C-------------------LYEHRIFTIK-----------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             ---e-------------------eeeeeeeccC-----------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence               0                   0001111111           12346678899999999999999 999999985331


Q ss_pred             Cc-eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          245 SD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      .. +..+.     .-......+|+.+++..++ ..++.+.....|.+|.+......   .+...             .|.
T Consensus       157 ~RDrgsr~-----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y~l~gr~p~---~~~ld-------------~~G  214 (933)
T KOG2114|consen  157 LRDRGSRQ-----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVMLYSLSGRTPS---LKVLD-------------NNG  214 (933)
T ss_pred             hhccccce-----eeeccCCCCceeeEEecCC-ceeEEEEecceeEEEEecCCCcc---eeeec-------------cCC
Confidence            11 11111     0123456899999999998 54344444557999998743211   12222             244


Q ss_pred             ccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeee-ecc
Q 010933          324 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHE  365 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~-~~~  365 (497)
                      ..++|.++++....++++...-+.+|+... .++-..+. ++.
T Consensus       215 ~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~k  256 (933)
T KOG2114|consen  215 ISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEK  256 (933)
T ss_pred             ccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCe
Confidence            678999998765557777778899999874 44444444 444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.67  E-value=3.4e-06  Score=71.06  Aligned_cols=168  Identities=13%  Similarity=0.067  Sum_probs=109.5

Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      ++++++  +++++++++.+....|..|.++.......                                           
T Consensus       161 ~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~-------------------------------------------  195 (344)
T KOG4532|consen  161 QNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIE-------------------------------------------  195 (344)
T ss_pred             eeeeEE--cCCCceEEEecCCCcceEEEeCCccceee-------------------------------------------
Confidence            677888  78999999999999999998875432111                                           


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                     +++.....+.-.+.+|+.....+|++ .||++.|||++..+.+....   ..+-+.|.+.++.+.
T Consensus       196 ---------------~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~  257 (344)
T KOG4532|consen  196 ---------------NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCR  257 (344)
T ss_pred             ---------------eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEE
Confidence                           11112333444678899999999999 99999999999554443321   123456999999999


Q ss_pred             EeCCCC-cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc-cccEEEEeeCCCEEEEEecCeEEE
Q 010933          271 FHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDYMNLKL  348 (497)
Q Consensus       271 ~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~~~i~l  348 (497)
                      |++.|. .+|+..-.-+.+.+.|+|+++.... +...+.         .+..|.. .|....|+.++.-+.+.+.-.+.=
T Consensus       258 Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d---------~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae  327 (344)
T KOG4532|consen  258 FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDD---------VERKHNTQHIFGTNFNNENESNDVKNELQGAE  327 (344)
T ss_pred             ecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCcc---------ccccccccccccccccCCCcccccccchhhhe
Confidence            998763 2455555568999999999865421 011111         0122222 377777877776666554444444


Q ss_pred             EecC
Q 010933          349 WDIR  352 (497)
Q Consensus       349 wd~~  352 (497)
                      |++.
T Consensus       328 ~ni~  331 (344)
T KOG4532|consen  328 YNIL  331 (344)
T ss_pred             eecc
Confidence            5543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=1.6e-07  Score=81.70  Aligned_cols=151  Identities=17%  Similarity=0.166  Sum_probs=108.9

Q ss_pred             CCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933          226 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  305 (497)
Q Consensus       226 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  305 (497)
                      |-.+.+|.+..|-+-|++ ++....        +. .++.|.++.|...+ +++..|..+|.|..+|+|.+..-    ..
T Consensus       225 gyhfs~G~sqqv~L~nve-tg~~qs--------f~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~  289 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVE-TGHQQS--------FQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG  289 (425)
T ss_pred             eeeecccccceeEEEEee-cccccc--------cc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence            444455677788888888 332211        22 56788999999888 89999999999999999976221    11


Q ss_pred             ecccccccCCccccccccccccEEEEee-CCCEEEEEec-CeEEEEecCCCCce---eeeeeecccccccccccCCCCCc
Q 010933          306 LRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSI  380 (497)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  380 (497)
                      +..         ..--|...|+++..-. ++++|++.+. |.|++||++. -++   +.++.+|...-.-          
T Consensus       290 ~~a---------~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~----------  349 (425)
T KOG2695|consen  290 WCA---------QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY----------  349 (425)
T ss_pred             cce---------EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc----------
Confidence            111         0112457788887765 6777777654 9999999986 666   8889999764321          


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       381 ~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                         .-+...+....++++++|-..+||.++.+..
T Consensus       350 ---l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  350 ---LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             ---cccccccccceEEEccCeeEEEEEecccCce
Confidence               2467778888999999999999999998843

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=1.1e-07  Score=82.51  Aligned_cols=132  Identities=12%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC----ceeeEEeecCCCccCCCCCCeEEEEEeC-CCCcEEEEEeCCC
Q 010933          213 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG  286 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg  286 (497)
                      ..+.|.++.|...++++..| .+|.|..+|++..    +.+.+        ..-|...|+++..-. ++ .+|++.+.+|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--------rlyh~Ssvtslq~Lq~s~-q~LmaS~M~g  321 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--------RLYHDSSVTSLQILQFSQ-QKLMASDMTG  321 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--------EEEcCcchhhhhhhcccc-ceEeeccCcC
Confidence            45678889999888899999 9999999999843    12222        234888999988766 55 7899999999


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-EecCeEEEEecCCCCceeeeeeecc
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHE  365 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~lwd~~~~~~~~~~~~~~~  365 (497)
                      +|++||+|.-+. .+.++.+++|.+..           .-.-+...+....+++ |+|...|||.++. +.++.+++-..
T Consensus       322 kikLyD~R~~K~-~~~V~qYeGHvN~~-----------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~  388 (425)
T KOG2695|consen  322 KIKLYDLRATKC-KKSVMQYEGHVNLS-----------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY  388 (425)
T ss_pred             ceeEeeehhhhc-ccceeeeecccccc-----------cccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence            999999997553 22336666654321           1122333454445555 5669999999996 88888876554


Q ss_pred             c
Q 010933          366 H  366 (497)
Q Consensus       366 ~  366 (497)
                      .
T Consensus       389 s  389 (425)
T KOG2695|consen  389 S  389 (425)
T ss_pred             c
Confidence            4

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.64  E-value=6.8e-07  Score=79.48  Aligned_cols=158  Identities=9%  Similarity=0.097  Sum_probs=98.8

Q ss_pred             eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEEEEE
Q 010933          217 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVD  292 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v~d  292 (497)
                      ...+..++.+++++.+ .+....+++.....+..+.++..  .+.   ..-+++.+..+. .....+..   ...+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~---~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVP---KRPTAISFIRED-TSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecc---cCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence            4455678889999998 77777777766333312221100  011   222344444443 33333333   34444554


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeee-eeeccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT-FKIHEHLRPK  370 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~-~~~~~~~~~~  370 (497)
                      ...+..     ..             .-+|..-+..++++||+++|++++ |..||+-.... --.+.. .-||...|  
T Consensus       139 ~~~~~~-----~~-------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV--  197 (390)
T KOG3914|consen  139 ADSGRC-----EP-------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV--  197 (390)
T ss_pred             ccccCc-----ch-------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe--
Confidence            443221     11             234667899999999999999996 59999877764 333444 35688876  


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                                   ..++.-++ ..|++||.|++|++||+.+++.+
T Consensus       198 -------------S~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  198 -------------STISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             -------------eeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence                         46666654 56899999999999999999765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.61  E-value=5.8e-08  Score=58.34  Aligned_cols=31  Identities=19%  Similarity=0.551  Sum_probs=29.9

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd   60 (497)
                      +|.+.|++|+|+|++++||+|+.|+.|++||
T Consensus         9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=6.7e-08  Score=93.95  Aligned_cols=216  Identities=14%  Similarity=0.235  Sum_probs=142.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      |+..-+|++|+-+.++|+.|+..|.|+++++.+|..                       .....+|.            .
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~------------S 1144 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQ------------S 1144 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------------cccccccc------------c
Confidence            678899999999999999999999999999998854                       45667888            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeC--CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          111 KINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      +|+-+.=  +.+|..+++.+.  .--..+|++...-                                            
T Consensus      1145 avT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~-------------------------------------------- 1178 (1516)
T KOG1832|consen 1145 AVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG-------------------------------------------- 1178 (1516)
T ss_pred             ccccccc--cCCcceeeeeccccCchHHHhcccccc--------------------------------------------
Confidence            8888875  678888777643  2356778775411                                            


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                     .+...|     ..-.++.|+.....-+.| ......+||+++...+...+.    ...+.+-.-.
T Consensus      1179 ---------------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1179 ---------------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----DTVTSSYSNN 1234 (1516)
T ss_pred             ---------------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC----cchhhhhhcc
Confidence                           111111     123356776654444555 567789999995554433210    0111222226


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  347 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~  347 (497)
                      .+.|+|+. .+++   .||  .+||+|..+.+    +.|..-              .---.-.|+|+|.-++..+.    
T Consensus      1235 ~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~f--------------t~~~~G~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1235 LAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQF--------------TDYGGGGFHPSGNEVIINSE---- 1286 (1516)
T ss_pred             ccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhh--------------eecccccccCCCceEEeech----
Confidence            77899997 6655   466  58999987554    444430              11123358999988887654    


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  397 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  397 (497)
                      |||+++ .+.+.....-..                 +.+.|...|..++.
T Consensus      1287 IwD~RT-F~lLh~VP~Ldq-----------------c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1287 IWDMRT-FKLLHSVPSLDQ-----------------CAVTFNSTGDVMYA 1318 (1516)
T ss_pred             hhhhHH-HHHHhcCccccc-----------------eEEEeccCccchhh
Confidence            899997 777766654443                 46888888876553

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.55  E-value=0.00017  Score=67.84  Aligned_cols=318  Identities=11%  Similarity=0.088  Sum_probs=156.2

Q ss_pred             cCCCCEEEEee---------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           41 DKTGDYLAVGD---------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        41 sp~g~~lasg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ||||++++...         ..+.+.|+|+++++.                        ..+....            ..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~------------------------~~l~~~~------------~~   44 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI------------------------TPLTPPP------------PK   44 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE------------------------EESS-EE------------TT
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce------------------------EECcCCc------------cc
Confidence            68999888742         346789999988653                        1111112            56


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      +....|  +|+|+.++.... +.|.+++..++....+.... ...                                   
T Consensus        45 ~~~~~~--sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg-~~~-----------------------------------   85 (353)
T PF00930_consen   45 LQDAKW--SPDGKYIAFVRD-NNLYLRDLATGQETQLTTDG-EPG-----------------------------------   85 (353)
T ss_dssp             BSEEEE---SSSTEEEEEET-TEEEEESSTTSEEEESES---TTT-----------------------------------
T ss_pred             ccccee--ecCCCeeEEEec-CceEEEECCCCCeEEecccc-cee-----------------------------------
Confidence            888999  688989888864 67999988776544432211 000                                   


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCC--CCCeE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL--TEVIT  267 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~i~  267 (497)
                        +.+..      +--.+-+.--..-..+-||||++.|+..  ++..|..+.+....             ..+  --.+.
T Consensus        86 --i~nG~------~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~-------------~~~~~yp~~~  144 (353)
T PF00930_consen   86 --IYNGV------PDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS-------------PPDSQYPEVE  144 (353)
T ss_dssp             --EEESB--------HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES-------------SSTESS-EEE
T ss_pred             --EEcCc------cceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC-------------CccccCCccc
Confidence              00000      0000000001122458899999999986  66666665543100             000  01233


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-Ee--c-
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD--Y-  343 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~--~-  343 (497)
                      .+.+-.-| .....    -.+.++|+.+++...  +.....          +..-...+..+.|.++++.|+. -.  + 
T Consensus       145 ~~~YPk~G-~~np~----v~l~v~~~~~~~~~~--~~~~~~----------~~~~~~yl~~v~W~~d~~~l~~~~~nR~q  207 (353)
T PF00930_consen  145 SIRYPKAG-DPNPR----VSLFVVDLASGKTTE--LDPPNS----------LNPQDYYLTRVGWSPDGKRLWVQWLNRDQ  207 (353)
T ss_dssp             EEE--BTT-S---E----EEEEEEESSSTCCCE--E---HH----------HHTSSEEEEEEEEEETTEEEEEEEEETTS
T ss_pred             ccccCCCC-CcCCc----eEEEEEECCCCcEEE--eeeccc----------cCCCccCcccceecCCCcEEEEEEcccCC
Confidence            44443333 11111    156778888775421  011100          0011356899999999984443 22  1 


Q ss_pred             --CeEEEEecCCCCceeeee-eecccccccccccCCCCCccceeEEEEc-CCCC-EEEEEeCCCcEEEEEcCCCCcceEE
Q 010933          344 --MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGL-HFATGSYSNLLRIFSHGVGSAGGIT  418 (497)
Q Consensus       344 --~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~  418 (497)
                        ..+.+.|..+ +.....+ ......+..          .  ....|. +++. +|.....||.-+||-++........
T Consensus       208 ~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~----------~--~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~  274 (353)
T PF00930_consen  208 NRLDLVLCDAST-GETRVVLEETSDGWVDV----------Y--DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ  274 (353)
T ss_dssp             TEEEEEEEEECT-TTCEEEEEEESSSSSSS----------S--SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred             CEEEEEEEECCC-CceeEEEEecCCcceee----------e--cccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence              4566777765 4332222 222333211          1  246654 5554 5555557787666655544343455


Q ss_pred             EeccCcceeeeEeecCCCcccccccceeEeeccC--c-eec--CC--CCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933          419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ--A-HEN--SS--SGHHELSYNLSSKLLHLAWHPTTNLIACANG  489 (497)
Q Consensus       419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~--~-~iw--~~--~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~  489 (497)
                      +....-.|..+.........+     ..++..+.  . ++|  ..  ++....+......-..++|||++++++..+.
T Consensus       275 lT~G~~~V~~i~~~d~~~~~i-----yf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  275 LTSGDWEVTSILGWDEDNNRI-----YFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             SS-SSS-EEEEEEEECTSSEE-----EEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             cccCceeecccceEcCCCCEE-----EEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            655666675644333223322     34444332  3 777  22  2223333333333368999999999886653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.53  E-value=8.3e-08  Score=93.32  Aligned_cols=204  Identities=13%  Similarity=0.167  Sum_probs=143.7

Q ss_pred             cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933           86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  165 (497)
Q Consensus        86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (497)
                      .|+..++|+.|+            ..-++++|  +.+..+|+.|+..|.|+++++.+|.....                 
T Consensus      1090 RFr~w~~frd~~------------~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s----------------- 1138 (1516)
T KOG1832|consen 1090 RFRSWRSFRDET------------ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEES----------------- 1138 (1516)
T ss_pred             hcccchhhhccc------------cceeeEEe--ecCCceEEeeeccceEEEEEccCcccccc-----------------
Confidence            345566677777            88999999  57788999999999999999998874321                 


Q ss_pred             ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--c-CCeEEEEeC
Q 010933          166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNL  242 (497)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~  242 (497)
                                                                  ..+|.++|+-+.-+.+|..+++.  . .-...+|++
T Consensus      1139 --------------------------------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1139 --------------------------------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             --------------------------------------------ccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence                                                        16899999999999999988774  3 336789998


Q ss_pred             ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933          243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                      .......+.       +    ..-.++.|+... ..-+.|.......+||+.++..+.+   .+.. ..         +.
T Consensus      1175 ~s~~~~~Hs-------f----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~~---------~~ 1229 (1516)
T KOG1832|consen 1175 SSTGGPRHS-------F----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-TV---------TS 1229 (1516)
T ss_pred             ccccCcccc-------c----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-ch---------hh
Confidence            855544332       1    223577888765 5556666667899999999876642   1222 00         00


Q ss_pred             cccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          323 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      ...-+++.|+|+..+++-  ||  .+||++. ...+..|......                ..=.|+|.|..++.-++  
T Consensus      1230 ~y~~n~a~FsP~D~LIln--dG--vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-- 1286 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN--DG--VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-- 1286 (1516)
T ss_pred             hhhccccccCCCcceEee--Cc--eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech--
Confidence            123378899999887764  22  4899986 4556665544321                24679999999998887  


Q ss_pred             cEEEEEcCCCCcc
Q 010933          403 LLRIFSHGVGSAG  415 (497)
Q Consensus       403 ~i~vw~~~~~~~~  415 (497)
                         |||+++.+.+
T Consensus      1287 ---IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1287 ---IWDMRTFKLL 1296 (1516)
T ss_pred             ---hhhhHHHHHH
Confidence               9999987544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=1.2e-05  Score=78.37  Aligned_cols=108  Identities=15%  Similarity=0.325  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCEEEEee----cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           36 SAIEFDKTGDYLAVGD----RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      +-..|+|...++|+++    ..|+|-||-- +|+.                     ..--+.+               -.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEP---------------------qr~Vt~P---------------~h   61 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEP---------------------QRDVTYP---------------VH   61 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEec-CCCC---------------------Ccccccc---------------ee
Confidence            4467999999999887    4588999853 3321                     0011122               22


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      +++++|+  |..-.|+.+-.-|.+.+|...+.+...+                                           
T Consensus        62 atSLCWH--pe~~vLa~gwe~g~~~v~~~~~~e~htv-------------------------------------------   96 (1416)
T KOG3617|consen   62 ATSLCWH--PEEFVLAQGWEMGVSDVQKTNTTETHTV-------------------------------------------   96 (1416)
T ss_pred             hhhhccC--hHHHHHhhccccceeEEEecCCceeeee-------------------------------------------
Confidence            5779995  5655677777889999998876553221                                           


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  243 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~  243 (497)
                                        ...|+.+|..+.|+++|..++++ .-|.+.+|...
T Consensus        97 ------------------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 ------------------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ------------------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence                              15789999999999999999999 99999999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=9.4e-06  Score=78.80  Aligned_cols=192  Identities=16%  Similarity=0.164  Sum_probs=127.1

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +...+.++|++++  +++||-|+.+|.|++.+.+..                        . .+...|.           
T Consensus        36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~------------------------~-~~~~~~s-----------   77 (846)
T KOG2066|consen   36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGN------------------------P-KTNFDHS-----------   77 (846)
T ss_pred             HHhhhHHHHHHhh--cceeeeccccceEEEEecCCc------------------------c-ccccccc-----------
Confidence            3456889999988  579999999999999997653                        1 2223343           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..        +.+|.++++||.||.|.|-.+.+.+....                                        
T Consensus        78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~----------------------------------------  108 (846)
T KOG2066|consen   78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQ----------------------------------------  108 (846)
T ss_pred             -cc--------ccCCceEEEecCCCcEEEeeccCCcccee----------------------------------------
Confidence             11        46799999999999999988776552221                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-----CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                            ..-..++.+++++|+     .+.+++| .-| +.++.-+--+....+      .+..-
T Consensus       109 ----------------------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~  159 (846)
T KOG2066|consen  109 ----------------------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEG  159 (846)
T ss_pred             ----------------------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecC
Confidence                                  122457888999987     5577777 666 877764422222221      14556


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      .++|+++.|.  | +++|-++.+| |++||+.+++.+.    .++. +......      ..--..+.|.++. .|+.|-
T Consensus       160 eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~----~i~~-p~~~~R~------e~fpphl~W~~~~-~LVIGW  223 (846)
T KOG2066|consen  160 EGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLT----NIPP-PSQSVRP------ELFPPHLHWQDED-RLVIGW  223 (846)
T ss_pred             ccceEEEEec--C-cEEEEecCCC-cEEEeccccceee----ccCC-CCCCCCc------ccCCCceEecCCC-eEEEec
Confidence            7999999997  4 7899998888 8999999876542    2211 0000000      1223467787655 555664


Q ss_pred             cCeEEEEecC
Q 010933          343 YMNLKLWDIR  352 (497)
Q Consensus       343 ~~~i~lwd~~  352 (497)
                      ..+|+|..++
T Consensus       224 ~d~v~i~~I~  233 (846)
T KOG2066|consen  224 GDSVKICSIK  233 (846)
T ss_pred             CCeEEEEEEe
Confidence            4678888876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.47  E-value=4e-07  Score=54.62  Aligned_cols=38  Identities=29%  Similarity=0.799  Sum_probs=34.0

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEee
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  139 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~  139 (497)
                      +++.++++|+            +.|++|+|  +|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence            3467889999            99999999  57789999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.46  E-value=7.6e-05  Score=66.16  Aligned_cols=157  Identities=15%  Similarity=0.062  Sum_probs=82.4

Q ss_pred             CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010933          226 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  304 (497)
Q Consensus       226 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  304 (497)
                      +..++.+ .++.++.+|..++....+.....   .+... ..........+ ..++++..++.|..+|+++|+.+.+   
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~---  147 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWK---  147 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEE---
T ss_pred             ccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEE---
Confidence            3345554 78899999988555544421111   01111 11122222225 7788888899999999999976422   


Q ss_pred             eecccccccCCccccccccccccEEEEeeCCCEEEEEecCe-EEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933          305 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  383 (497)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
                       ... ...... ..+. ....+..-....++..+++..++. +.+ |+.+ ++.+.... ....                
T Consensus       148 -~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~----------------  204 (238)
T PF13360_consen  148 -YPV-GEPRGS-SPIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI----------------  204 (238)
T ss_dssp             -EES-STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E----------------
T ss_pred             -eec-CCCCCC-ccee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc----------------
Confidence             111 000000 0000 001112222223453444444564 555 9987 66444332 1111                


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          384 FECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                       ......++..|+.++.++.|..||+.+++.
T Consensus       205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             -cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence             122456788888888999999999999844

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=5.6e-06  Score=74.82  Aligned_cols=221  Identities=21%  Similarity=0.187  Sum_probs=138.4

Q ss_pred             cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      ++..|.+.|+.+.-   .-..++.+++.||.++.|.-..-....                                    
T Consensus         4 ksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvE------------------------------------   44 (558)
T KOG0882|consen    4 KSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVE------------------------------------   44 (558)
T ss_pred             hhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCcccee------------------------------------
Confidence            34445577877765   345699999999999999754322111                                    


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                           .++- +..|...|.+++.+.+|.++.+. . |..++++|++ .-.....+.     +..
T Consensus        45 ---------------------fVKh-FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE-n~DminmiK-----L~~   96 (558)
T KOG0882|consen   45 ---------------------FVKH-FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE-NFDMINMIK-----LVD   96 (558)
T ss_pred             ---------------------ehhh-hHHHHHHHHhhhccccceeEeeccCcccceeEEEee-ccchhhhcc-----ccc
Confidence                                 1111 26888889999999999999996 5 9999999998 333332211     111


Q ss_pred             CCCCeEEEEEe--CCCC-cEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933          262 LTEVITSAEFH--PIYC-NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  337 (497)
Q Consensus       262 ~~~~i~~~~~~--~~~~-~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  337 (497)
                      ..   ..+.|.  +... ..++++. .++.+.++|-+......   ..+.            .-|..+|..+.+++-+..
T Consensus        97 lP---g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   97 LP---GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             CC---CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeeccccc
Confidence            11   122232  2210 1344443 47899999977543211   1111            235688999999999998


Q ss_pred             EEEEec-CeEEEEecCC-----CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          338 LLSRDY-MNLKLWDIRM-----DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       338 l~~~~~-~~i~lwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      +++.+. |-|.-|....     ..+....++......    ...+....  ..++.|+|++..+.+-+.|..|+++++.+
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy----~f~K~Kt~--pts~Efsp~g~qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY----GFPKAKTE--PTSFEFSPDGAQISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhh----cccccccC--ccceEEccccCcccccCcccEEEEEEecc
Confidence            888765 9999999862     111222222211110    00000011  15899999999999999999999999999


Q ss_pred             CCcc
Q 010933          412 GSAG  415 (497)
Q Consensus       412 ~~~~  415 (497)
                      ++.+
T Consensus       233 Gklv  236 (558)
T KOG0882|consen  233 GKLV  236 (558)
T ss_pred             chhh
Confidence            8543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.44  E-value=4.4e-05  Score=67.53  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-cCC-------eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE-E
Q 010933          212 AHDFNINSISNNSDCETFVSA-DDL-------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-S  282 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~  282 (497)
                      -|...|..+++.++|..++.. ..+       .+-+++..   ..+..+..++.........+-+|++++++ .++++ +
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts  235 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS  235 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence            467789999999999887775 433       23444433   33444433333345567889999999998 66654 4


Q ss_pred             eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933          283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  350 (497)
Q Consensus       283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd  350 (497)
                      =..+.+.+||..+++.+    .....               ..+..++-.+++ ++++...|.+...+
T Consensus       236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence            45789999999998765    22222               336667766666 66655446544333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.39  E-value=0.00024  Score=72.60  Aligned_cols=241  Identities=15%  Similarity=0.111  Sum_probs=133.6

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      +.|.++.|.-+++-++.+..+|.|.+-|.++...                         ++.|.-           +.+|
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------eivg~v-----------d~GI  112 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------EIVGNV-----------DNGI  112 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------eeeeec-----------cCce
Confidence            6899999999999999999999999998877532                         222222           2889


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .+++|  +||.+.++..+.++++.+-.- +...+.....  ..+      ....+.++..-+....+.+....    +..
T Consensus       113 ~aasw--S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L--~~d------~~~~sk~v~VGwGrkeTqfrgs~----gr~  177 (1265)
T KOG1920|consen  113 SAASW--SPDEELLALITGRQTLLFMTK-DFEPIAEKPL--DAD------DERKSKFVNVGWGRKETQFRGSE----GRQ  177 (1265)
T ss_pred             EEEee--cCCCcEEEEEeCCcEEEEEec-cccchhcccc--ccc------cccccccceecccccceeeecch----hhh
Confidence            99999  789999999998888776432 1111110000  000      00001111111111111110000    000


Q ss_pred             EEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEE-----EcC-CeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          193 KIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVS-----ADD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~-----~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                      ...+..     ...+.. .....+.=.+++|-.||+++++     ..+ +.|++||.+  +..-.+       -.....-
T Consensus       178 ~~~~~~-----~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~-------se~~~~l  243 (1265)
T KOG1920|consen  178 AARQKI-----EKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNST-------SEPVEGL  243 (1265)
T ss_pred             cccccc-----cccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcc-------cCccccc
Confidence            000000     000000 0011222346899999999987     234 899999987  322211       1222333


Q ss_pred             eEEEEEeCCCCcEEEEEe---CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          266 ITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      =.+++|-|.| .++++-.   .|+.|.+|.-+.-+.- ...-.+.             .....+..++|+.++..||.- 
T Consensus       244 ~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg-~f~l~~p-------------~de~~ve~L~Wns~sdiLAv~~  308 (1265)
T KOG1920|consen  244 QHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHG-EFVLPFP-------------LDEKEVEELAWNSNSDILAVVT  308 (1265)
T ss_pred             ccceeecCCC-CeEeeeeecCCCCcEEEEecCCcccc-ccccCCc-------------ccccchheeeecCCCCceeeee
Confidence            4688999999 8888763   3667888875432110 0001111             112348999999999999883 


Q ss_pred             --ec-CeEEEEecCC
Q 010933          342 --DY-MNLKLWDIRM  353 (497)
Q Consensus       342 --~~-~~i~lwd~~~  353 (497)
                        .. ..|++|-+.+
T Consensus       309 ~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  309 SNLENSLVQLWTTGN  323 (1265)
T ss_pred             cccccceEEEEEecC
Confidence              23 4599998864

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.32  E-value=2.2e-07  Score=87.39  Aligned_cols=208  Identities=15%  Similarity=0.166  Sum_probs=135.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..+.++++....+...++.|..+|.|-+-.+....-..                                          
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs------------------------------------------   94 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS------------------------------------------   94 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccccc------------------------------------------
Confidence            56778887544444567778888999887765433110                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-c----CCeEEEEeCccCc-eeeEEeecCCCccCC-
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISD-QCFNIVDMKPSNMDD-  261 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~----d~~i~iwd~~~~~-~~~~~~~~~~~~~~~-  261 (497)
                                       ..+..++..+.++++|++ |.+.||+| +    |..+.|||+.+.- .+....     .+.+ 
T Consensus        95 -----------------~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~-----~fs~~  152 (783)
T KOG1008|consen   95 -----------------AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP-----LFSSS  152 (783)
T ss_pred             -----------------ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc-----ccccc
Confidence                             001257788999999988 67788887 3    6789999998321 111111     1211 


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEE
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS  340 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~  340 (497)
                      ......+++|..+. +++.+|...+.+.++|+|......   ..+.               +..+..+.++| .+.|+++
T Consensus       153 ~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  153 TLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccCccccccccCc-chhhcccccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceec
Confidence            33445588999887 889999999999999999532210   1111               13577788899 7889998


Q ss_pred             EecCeEEEEe-cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeC-CCcEEEEEcCC
Q 010933          341 RDYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSY-SNLLRIFSHGV  411 (497)
Q Consensus       341 ~~~~~i~lwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~-dg~i~vw~~~~  411 (497)
                      -.++.|-+|| .+.-.+++..+...+...+        +..   ..++|.|... .|++.+. .+.|+++++..
T Consensus       214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~--------~~l---~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  214 NSDGDIAIWDTYRNIENPLQIILRNENKKP--------KQL---FALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cccCceeeccchhhhccHHHHHhhCCCCcc--------cce---eeEEeccCCcchhhhhccCcceEEEecccc
Confidence            8899999999 4433445555543333211        111   5899999542 4555554 57899999864

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.30  E-value=0.0014  Score=62.97  Aligned_cols=154  Identities=12%  Similarity=0.012  Sum_probs=79.9

Q ss_pred             CEEEEE-cCCeEEEEeCccCceeeEEeecCCC--ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933          227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  303 (497)
Q Consensus       227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  303 (497)
                      ..++.+ .++.++-+|.++++...+. .....  .......+    ...  + ..++.++.+|.+..+|..+|+...+. 
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~sP----~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~-  231 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTV-NLDVPSLTLRGESAP----ATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQ-  231 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeee-cCCCCcccccCCCCC----EEE--C-CEEEEEcCCCEEEEEEccCChhhhee-
Confidence            345556 8888999998855544332 10000  00011111    111  2 35677888999999999998754321 


Q ss_pred             ceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933          304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  383 (497)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
                         +.  ..+.....+..-........+ .++..++++.++.+..+|+.+ ++.+........                 
T Consensus       232 ---~~--~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~-----------------  287 (394)
T PRK11138        232 ---RI--SQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV-----------------  287 (394)
T ss_pred             ---cc--ccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc-----------------
Confidence               10  000000000000000011111 144444445569999999986 776655432111                 


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          384 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      ..+..  ++..|+.++.+|.++.+|..+++.+
T Consensus       288 ~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        288 NDFAV--DGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             cCcEE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence            12222  4567888889999999999888543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=5.2e-05  Score=73.86  Aligned_cols=144  Identities=12%  Similarity=-0.000  Sum_probs=97.6

Q ss_pred             CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933          216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  294 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~  294 (497)
                      .+++++++  ++.|+-| .+|.|++++.. ... ..        ...|+..      .-+| .++++|+.||.|.|-.+-
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~--------~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KT--------NFDHSSS------ILEG-EYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecC-Ccc-cc--------ccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence            45555554  5688899 99999999987 332 22        2234333      5677 999999999999999888


Q ss_pred             CCcccccccceecccccccCCccccccccccccEEEEeeC-----CCEEEEEec-CeEEEEecCCCCceeee-eeecccc
Q 010933          295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHL  367 (497)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~  367 (497)
                      +.+.+    ..+.-              ..++.+++++|+     .+.+++|+. | +.++.-+--+..... +...++.
T Consensus       102 ~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~  162 (846)
T KOG2066|consen  102 TDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP  162 (846)
T ss_pred             CCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence            77655    33333              257999999998     467788777 6 888765432222222 2222332


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                                     |.++.|.  |.+||-++.+| |+|||+.+++.+
T Consensus       163 ---------------I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l  192 (846)
T KOG2066|consen  163 ---------------IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL  192 (846)
T ss_pred             ---------------eEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence                           2688884  67888887765 789999987554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00041  Score=68.39  Aligned_cols=181  Identities=14%  Similarity=0.128  Sum_probs=103.3

Q ss_pred             CCCCC-eeEEEeCCCCCEEEE-E-cCC----eEEEEeCccC-----ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEE
Q 010933          212 AHDFN-INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  279 (497)
Q Consensus       212 ~h~~~-v~~~~~~~~~~~l~~-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  279 (497)
                      .+... |..+-...+...|++ | +++    .+++|+++..     .+++....+-+...+....++.+++++.+- +.+
T Consensus        62 a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~I  140 (933)
T KOG2114|consen   62 AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTI  140 (933)
T ss_pred             ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEE
Confidence            33333 333333334456665 4 444    7999998743     223311111111233346788899999987 899


Q ss_pred             EEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEEecCeEEEEecCCCCce-
Q 010933          280 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTP-  357 (497)
Q Consensus       280 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~i~lwd~~~~~~~-  357 (497)
                      |+|-.+|.|..+.-.--+...  .+.--.           .....+|+.+++..+++. +++++-..|.+|.+.. ..+ 
T Consensus       141 v~Gf~nG~V~~~~GDi~RDrg--sr~~~~-----------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~  206 (933)
T KOG2114|consen  141 VCGFTNGLVICYKGDILRDRG--SRQDYS-----------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPS  206 (933)
T ss_pred             EEEecCcEEEEEcCcchhccc--cceeee-----------ccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcc
Confidence            999999999987432111000  011101           112478999999988876 5555668999999974 333 


Q ss_pred             eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe-ccCc
Q 010933          358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKN  424 (497)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~-~~~~  424 (497)
                      ...+..|....               .+.++++....+++++. ..+.+|+.+.. .....+. +|+.
T Consensus       207 ~~~ld~~G~~l---------------nCss~~~~t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g~kk  257 (933)
T KOG2114|consen  207 LKVLDNNGISL---------------NCSSFSDGTYQFICAGS-EFLYFYDSDGR-GPCFAFEVGEKK  257 (933)
T ss_pred             eeeeccCCccc---------------eeeecCCCCccEEEecC-ceEEEEcCCCc-ceeeeecCCCeE
Confidence            33344444322               46777765443444433 47899997754 3334454 5544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=0.0002  Score=64.20  Aligned_cols=78  Identities=8%  Similarity=0.241  Sum_probs=60.2

Q ss_pred             cCCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .|...|..++|||..+ ++..++.+..|+|.|+++..                       ....+..|            
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-----------------------~vssy~a~------------  235 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-----------------------VVSSYIAY------------  235 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccce-----------------------eeeheecc------------
Confidence            4678999999999776 78889999999999998753                       24445555            


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  144 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~  144 (497)
                       ..+++++|.. .+..++.+|-.+|.|.+||++..+
T Consensus       236 -~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  236 -NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             -CCceeeeecc-CCcceeEEeccCceEEEEEccCCC
Confidence             4599999952 334556666799999999998644

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.18  E-value=0.00011  Score=69.46  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=59.3

Q ss_pred             cccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933          323 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  401 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  401 (497)
                      ...+.+++++|+.+.++.| .||.|.+||... +  +..+.... .++              +.++|+|+|..+++|+..
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence            4689999999999888887 679999999875 2  22222111 111              579999999999999999


Q ss_pred             CcEEEEEcCCCCcceEEE
Q 010933          402 NLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       402 g~i~vw~~~~~~~~~~~~  419 (497)
                      |.+.+||+.-.....+.+
T Consensus       321 GelQ~FD~ALspi~~qLl  338 (545)
T PF11768_consen  321 GELQCFDMALSPIKMQLL  338 (545)
T ss_pred             ceEEEEEeecCccceeec
Confidence            999999997664333333

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.15  E-value=4.9e-05  Score=75.00  Aligned_cols=143  Identities=14%  Similarity=0.131  Sum_probs=96.5

Q ss_pred             CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---------CCeEEEEEc
Q 010933          224 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDM  293 (497)
Q Consensus       224 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~v~d~  293 (497)
                      .+++.+.+| ..|+|.+-|.+ .-+.++.       +..|++.|..+..  .| ++|++++.         |.-|+|||+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~-s~~~iht-------~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPN-SFETIHT-------FDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             ecCcEEEeecccceEEeecCC-cCceeee-------eeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhh
Confidence            457889999 99999999998 5555554       7889999887655  46 78888875         556899999


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCC--CEEEEEecCeEEEEecCCCCce-eeeeeeccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTP-VATFKIHEHLRPK  370 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~  370 (497)
                      |..+.+    ..+..+              ..-.-+.|+|.-  +.+++.+.|...+-|...-+.+ ...+..+...   
T Consensus       254 Rmmral----~PI~~~--------------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~---  312 (1118)
T KOG1275|consen  254 RMMRAL----SPIQFP--------------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG---  312 (1118)
T ss_pred             hhhhcc----CCcccc--------------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC---
Confidence            986544    222210              112446677743  3333445599999884332333 2222222211   


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                              .  .+..+++|++++.||.|..+|.|.+|.
T Consensus       313 --------s--~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  313 --------S--GISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             --------C--cceeEEecCCCceEEEecccCcEeeec
Confidence                    0  025899999999999999999999998

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.15  E-value=0.00022  Score=67.85  Aligned_cols=160  Identities=16%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE--c-C--CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933          212 AHDFNINSISNNSDCETFVSA--D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  286 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~--~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  286 (497)
                      .....+..-.|+|++..++.-  . .  ..++++++..+.. ..+.     ++.   ..-...+|+|+|..++++...||
T Consensus       190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~-----~~~---g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVIL-----NFN---GNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceee-----ccC---CccCCccCCCCCCEEEEEECCCC
Confidence            334566778899999987763  2 2  3599999984443 3331     122   33345689999944445555566


Q ss_pred             e--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeee
Q 010933          287 F--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       287 ~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~  362 (497)
                      .  |.++|+..+...    + +.. .            .+.-..-.|+|||++++..+|  |.-.||-...++.....+.
T Consensus       261 ~~~iy~~dl~~~~~~----~-Lt~-~------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT  322 (425)
T COG0823         261 SPDIYLMDLDGKNLP----R-LTN-G------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT  322 (425)
T ss_pred             CccEEEEcCCCCcce----e-ccc-C------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence            5  566677766522    2 211 0            122336689999999998765  5545554443355445554


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCc--EEEEEcCCCC
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGS  413 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~--i~vw~~~~~~  413 (497)
                      .....-               ..-.|+|||++|+..+. +|.  |.+.++.++.
T Consensus       323 ~~~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         323 FSGGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            333321               25789999999987664 344  6677776654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.15  E-value=0.0018  Score=62.12  Aligned_cols=102  Identities=13%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCc
Q 010933          277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST  356 (497)
Q Consensus       277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~  356 (497)
                      ..++.++.+|.+..+|..+|+..      |.. ..            .....+.. .++..++...++.+..+|..+ ++
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~~------------~~~~~~~~-~~~~vy~~~~~g~l~ald~~t-G~  315 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIV------WKR-EY------------GSVNDFAV-DGGRIYLVDQNDRVYALDTRG-GV  315 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEE------Eee-cC------------CCccCcEE-ECCEEEEEcCCCeEEEEECCC-Cc
Confidence            46777788999999999998744      222 00            11112222 234344444569999999986 66


Q ss_pred             eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      .+..........            .  .+...  .+.+|+.++.||.|++.|..+++.+
T Consensus       316 ~~W~~~~~~~~~------------~--~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        316 ELWSQSDLLHRL------------L--TAPVL--YNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             EEEcccccCCCc------------c--cCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            655432211110            0  12222  2457888999999999999998554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.14  E-value=0.00032  Score=71.82  Aligned_cols=207  Identities=14%  Similarity=0.107  Sum_probs=127.4

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.++.|.  .+...++.+..+|.|.+-|..+......                                         
T Consensus        69 ~~i~s~~fl--~d~~~i~v~~~~G~iilvd~et~~~eiv-----------------------------------------  105 (1265)
T KOG1920|consen   69 DEIVSVQFL--ADTNSICVITALGDIILVDPETLELEIV-----------------------------------------  105 (1265)
T ss_pred             cceEEEEEe--cccceEEEEecCCcEEEEcccccceeee-----------------------------------------
Confidence            579999995  5667788888888898887776553321                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc----cCcee----------eEEeec
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE----ISDQC----------FNIVDM  254 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~----~~~~~----------~~~~~~  254 (497)
                                           ..-...|.+++|+||++.++.. ..+++.+-.-.    .....          +.+=..
T Consensus       106 ---------------------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwG  164 (1265)
T KOG1920|consen  106 ---------------------GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWG  164 (1265)
T ss_pred             ---------------------eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceeccc
Confidence                                 2335678999999999999887 66666654321    01111          000000


Q ss_pred             CC-CccC------------------C---CCCCeEEEEEeCCCCcEEEEEeC----C-CeEEEEEccCCcccccccceec
Q 010933          255 KP-SNMD------------------D---LTEVITSAEFHPIYCNLLAYSSS----R-GFVRLVDMRQSALCDHSARILR  307 (497)
Q Consensus       255 ~~-~~~~------------------~---~~~~i~~~~~~~~~~~~l~~~~~----d-g~i~v~d~~~~~~~~~~~~~~~  307 (497)
                      +. ..+.                  +   ..+.=+.+.|.-|| .++|+...    + +.|++||-+ |.+-......  
T Consensus       165 rkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~--  240 (1265)
T KOG1920|consen  165 RKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV--  240 (1265)
T ss_pred             ccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcc--
Confidence            00 0000                  0   11222458999999 88888422    3 799999977 4432110010  


Q ss_pred             ccccccCCccccccccccccEEEEeeCCCEEEEE----ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933          308 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  383 (497)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
                                     .+.-.+++|-|.|.++++-    +++.|.+|.-+  |-....+.........        .   +
T Consensus       241 ---------------~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~~p~de~--------~---v  292 (1265)
T KOG1920|consen  241 ---------------EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLPFPLDEK--------E---V  292 (1265)
T ss_pred             ---------------cccccceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccCCccccc--------c---h
Confidence                           1335789999999999983    34789999864  4333333222211100        0   1


Q ss_pred             eEEEEcCCCCEEEE---EeCCCcEEEEEcCCC
Q 010933          384 FECSVSGDGLHFAT---GSYSNLLRIFSHGVG  412 (497)
Q Consensus       384 ~~~~~s~~~~~l~s---~~~dg~i~vw~~~~~  412 (497)
                      ..++|+.++..||+   ......|++|-+.+.
T Consensus       293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             heeeecCCCCceeeeecccccceEEEEEecCe
Confidence            58999999999997   555566999998775

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.14  E-value=0.0075  Score=57.76  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             ccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeec
Q 010933          324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  364 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~  364 (497)
                      +++..|++||+|+++|.-.+ |.+.+.+... .+.+..+...
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~  257 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD  257 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence            57999999999999998765 9999988765 5556666554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00013  Score=65.31  Aligned_cols=80  Identities=18%  Similarity=0.083  Sum_probs=64.8

Q ss_pred             eccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933          209 YPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  286 (497)
Q Consensus       209 ~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  286 (497)
                      ++..|...|.+++|+|..+ ++..+ .+..|+|.|++ .......       ...+ ..+++++|+-+..++|+.|...|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vss-------y~a~-~~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSS-------YIAY-NQIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeeh-------eecc-CCceeeeeccCCcceeEEeccCc
Confidence            3478889999999999877 56667 99999999999 4444433       3334 78999999988878899999999


Q ss_pred             eEEEEEccCCc
Q 010933          287 FVRLVDMRQSA  297 (497)
Q Consensus       287 ~i~v~d~~~~~  297 (497)
                      .|.+||++..+
T Consensus       259 ~VlvyD~R~~~  269 (463)
T KOG1645|consen  259 MVLVYDMRQPE  269 (463)
T ss_pred             eEEEEEccCCC
Confidence            99999999754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.10  E-value=0.0062  Score=54.96  Aligned_cols=265  Identities=11%  Similarity=0.059  Sum_probs=138.3

Q ss_pred             EEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          114 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      .+..  +|+++.+++++          ....|.+||..+-....-...+..+...      .-...-....+.++++++.
T Consensus        40 ~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~------~~~~~~~~~ls~dgk~~~V  111 (342)
T PF06433_consen   40 NVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ------VVPYKNMFALSADGKFLYV  111 (342)
T ss_dssp             EEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS--GGGEEE-TTSSEEEE
T ss_pred             ceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe------ecccccceEEccCCcEEEE
Confidence            3455  68888888753          4568999999876544332222210000      0001111223445555555


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                      .-+++...+.+-|+.....   +..+   ....+..+--+++..+...|.||.+.-..+...++...... +  -+..-.
T Consensus       112 ~N~TPa~SVtVVDl~~~kv---v~ei---~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~F~~~~  182 (342)
T PF06433_consen  112 QNFTPATSVTVVDLAAKKV---VGEI---DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K--VFDPDD  182 (342)
T ss_dssp             EEESSSEEEEEEETTTTEE---EEEE---EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E--ESSTTT
T ss_pred             EccCCCCeEEEEECCCCce---eeee---cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec-c--ccCCCC
Confidence            5566666777777765422   2211   01112222112233344445888888887775554432210 0  122222


Q ss_pred             CCeE-EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          264 EVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       264 ~~i~-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      +++. .-++...+ ..++..+.+|.|+--|+......  ....++.-.. .+....+.  .+...-+++++..+.|... 
T Consensus       183 dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~--~~~~~~~~t~-~e~~~~Wr--PGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  183 DPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAK--FGKPWSLLTD-AEKADGWR--PGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             S-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEE--EEEEEESS-H-HHHHTTEE--E-SSS-EEEETTTTEEEEEE
T ss_pred             cccccccceECCC-CeEEEEecCCEEEEEeccCCccc--ccCcccccCc-cccccCcC--CcceeeeeeccccCeEEEEe
Confidence            3332 44556555 66777899999999998765421  1122221000 00000011  1456778888766555542 


Q ss_pred             ---e-----c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEE-eCCCcEEEEEc
Q 010933          342 ---D-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSH  409 (497)
Q Consensus       342 ---~-----~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg~i~vw~~  409 (497)
                         .     +  ..|.++|+.+ ++.+.++......                .++..+.+.+ +|++. ..++.|.+||.
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             cCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence               1     1  3788889987 8888888754432                4899999876 66554 45899999999


Q ss_pred             CCCCcceEEE
Q 010933          410 GVGSAGGITV  419 (497)
Q Consensus       410 ~~~~~~~~~~  419 (497)
                      .+++.+ ..+
T Consensus       320 ~tGk~~-~~~  328 (342)
T PF06433_consen  320 ATGKLV-RSI  328 (342)
T ss_dssp             TT--EE-EEE
T ss_pred             cCCcEE-eeh
Confidence            998554 444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.08  E-value=8.1e-05  Score=73.55  Aligned_cols=152  Identities=17%  Similarity=0.220  Sum_probs=103.1

Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.-|+.    +++++.+|...|+|.+-|..+.+.+                                            
T Consensus       179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~i--------------------------------------------  210 (1118)
T KOG1275|consen  179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETI--------------------------------------------  210 (1118)
T ss_pred             ceEEEEe----cCcEEEeecccceEEeecCCcCcee--------------------------------------------
Confidence            4666665    5678888889999999888776633                                            


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c---------CCeEEEEeCccCceeeEEeecCCCccC
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                      .++ ..|++.|.++..  .|+.|+++ .         |.-|++||++.-.. +..       +.
T Consensus       211 ----------------ht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~P-------I~  263 (1118)
T KOG1275|consen  211 ----------------HTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSP-------IQ  263 (1118)
T ss_pred             ----------------eee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc-cCC-------cc
Confidence                            333 789998877655  57778774 2         45688999884332 221       12


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      -+.++ .-+.|.|.-+..+++++..|...+-|..+-....  ..++-           +......+..+.++++|..++.
T Consensus       264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~-----------v~p~~s~i~~fDiSsn~~alaf  329 (1118)
T KOG1275|consen  264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKM-----------VNPNGSGISAFDISSNGDALAF  329 (1118)
T ss_pred             cccCc-hhhhhcccccceEEEEecccceeeccccccCCCc--cceeE-----------EccCCCcceeEEecCCCceEEE
Confidence            22222 5678899877889999999999999843311100  01111           1122356999999999999999


Q ss_pred             Eec-CeEEEEec
Q 010933          341 RDY-MNLKLWDI  351 (497)
Q Consensus       341 ~~~-~~i~lwd~  351 (497)
                      |+. |.|.+|.-
T Consensus       330 gd~~g~v~~wa~  341 (1118)
T KOG1275|consen  330 GDHEGHVNLWAD  341 (1118)
T ss_pred             ecccCcEeeecC
Confidence            965 99999973

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.06  E-value=4.7e-06  Score=78.75  Aligned_cols=211  Identities=15%  Similarity=0.195  Sum_probs=126.7

Q ss_pred             CCcceEEEEEcCC--CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           31 DVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        31 h~~~I~~i~~sp~--g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+..+.|++.+-+  ..+++.|..+|.|-+-......-                     .-.-...+|.           
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd---------------------Ss~E~tp~~a-----------  102 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD---------------------SSAEVTPGYA-----------  102 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCccc---------------------ccceeccccc-----------
Confidence            3567778887654  45889999999999987654311                     0011123444           


Q ss_pred             ccceeEEEEEecCCCCEEEEEe----CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                       ...++++|.+ -|...|++|-    .|..+.|||+.++-........+                               
T Consensus       103 -r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f-------------------------------  149 (783)
T KOG1008|consen  103 -RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF-------------------------------  149 (783)
T ss_pred             -cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCcccccc-------------------------------
Confidence             6789999963 4555666662    56789999998764211110000                               


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                               ..+......+++|..+.+++.+| ....+.++|++.......         .-.+
T Consensus       150 -------------------------s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnT  195 (783)
T KOG1008|consen  150 -------------------------SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNT  195 (783)
T ss_pred             -------------------------ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhh
Confidence                                     01122334478888999999999 899999999982211111         1123


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEc-cCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEE-
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS-  340 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-  340 (497)
                      ..+..+.++|-..+++++-. ||.|.+||. +.-+   +....+.. ...+.        ...+..++|.|... .+++ 
T Consensus       196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---npl~~i~~-~~N~~--------~~~l~~~aycPtrtglla~l  262 (783)
T KOG1008|consen  196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---NPLQIILR-NENKK--------PKQLFALAYCPTRTGLLAVL  262 (783)
T ss_pred             hhcccceecCCCCCceeccc-cCceeeccchhhhc---cHHHHHhh-CCCCc--------ccceeeEEeccCCcchhhhh
Confidence            45667788884326666554 999999994 3322   11121111 11100        12588999999643 3333 


Q ss_pred             Eec-CeEEEEecCC
Q 010933          341 RDY-MNLKLWDIRM  353 (497)
Q Consensus       341 ~~~-~~i~lwd~~~  353 (497)
                      ..+ +.|++||+..
T Consensus       263 ~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  263 SRDSITIRLYDICV  276 (783)
T ss_pred             ccCcceEEEecccc
Confidence            345 9999999864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.05  E-value=0.0022  Score=60.55  Aligned_cols=268  Identities=13%  Similarity=0.114  Sum_probs=126.1

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCcccc---chhhhh-------hhccc----------CCCCCCcccccccc
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHI---SRSELE-------KQMDF----------TSTSHPEYRYKTEF   93 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~-------~~~~~----------~~~~~~~~~~~~~~   93 (497)
                      .|+++.|+++..-||+|...|.|.||.+...+...   .-..++       .+...          .+.-+..+.+..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999998889999999999999987654321   000000       00000          00001112222222


Q ss_pred             cccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccC
Q 010933           94 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  173 (497)
Q Consensus        94 ~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (497)
                      +..            .++|++++.   .|-.+++.|..+|.+.|.|+++...+.......                    
T Consensus        83 ~~~------------~g~vtal~~---S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~--------------------  127 (395)
T PF08596_consen   83 DAK------------QGPVTALKN---SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------  127 (395)
T ss_dssp             ---------------S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------
T ss_pred             ecc------------CCcEeEEec---CCCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------
Confidence            222            389999998   467799999999999999998766543211100                    


Q ss_pred             CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeC-----CCC---CEEEEE-cCCeEEEEeCcc
Q 010933          174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLEI  244 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~---~~l~~~-~d~~i~iwd~~~  244 (497)
                                                       ..........++++.|.     .|+   -.+++| ..|.+.+|.+.-
T Consensus       128 ---------------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp  174 (395)
T PF08596_consen  128 ---------------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP  174 (395)
T ss_dssp             -----------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred             ---------------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence                                             00002334456666664     233   356678 889999997752


Q ss_pred             -CceeeEEeecCCCccCCCCCCeEEEE-EeCCC-C------------------cEEEEEeCCCeEEEEEccCCccccccc
Q 010933          245 -SDQCFNIVDMKPSNMDDLTEVITSAE-FHPIY-C------------------NLLAYSSSRGFVRLVDMRQSALCDHSA  303 (497)
Q Consensus       245 -~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~-~------------------~~l~~~~~dg~i~v~d~~~~~~~~~~~  303 (497)
                       .+..+......  ....+.++|..+. ++.+. .                  +-+++...+..+|++...+.+...   
T Consensus       175 ~~~g~f~v~~~~--~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~---  249 (395)
T PF08596_consen  175 SSNGRFSVQFAG--ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH---  249 (395)
T ss_dssp             -GGG-EEEEEEE--EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE---
T ss_pred             CCCCceEEEEee--ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc---
Confidence             22212111000  0124556666555 32210 0                  124445557789999887765432   


Q ss_pred             ceecccccccCCccccccccccccEEEEe-----eCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCC
Q 010933          304 RILRDAAESHGSKSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN  377 (497)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (497)
                      +.++.              .-....+.+-     ..+..|++- .+|.+++|.+.. -+.+..++.........      
T Consensus       250 K~~~~--------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~------  308 (395)
T PF08596_consen  250 KSFDD--------------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRR------  308 (395)
T ss_dssp             EE-SS---------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHH------
T ss_pred             eeecc--------------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCcccccc------
Confidence            22221              0112233332     234455554 569999999975 67777766543211000      


Q ss_pred             CCccceeEEEEcCCCCEEEEEeC
Q 010933          378 DSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       378 ~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                           +....++++|..++-.+.
T Consensus       309 -----~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  309 -----LSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             -----HTT-EE-TTS-EEEE-SS
T ss_pred             -----ccccEECCCCCEEEEeCc
Confidence                 135778888887765554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.05  E-value=0.0017  Score=56.77  Aligned_cols=220  Identities=15%  Similarity=0.243  Sum_probs=108.7

Q ss_pred             cceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        33 ~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      +.++.++|+|+.+ ++|+....+.|...+.+ |+.                     .-...+.+.             +.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v---------------------lr~i~l~g~-------------~D   66 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV---------------------LRRIPLDGF-------------GD   66 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---------------------EEEEE-SS--------------SS
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE---------------------EEEEeCCCC-------------CC
Confidence            4599999999755 66667778888777764 322                     001123332             33


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .-.|++.  .++.++++.-.++.+.++++..... ....                                         
T Consensus        67 ~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~-----------------------------------------  103 (248)
T PF06977_consen   67 YEGITYL--GNGRYVLSEERDQRLYIFTIDDDTTSLDRA-----------------------------------------  103 (248)
T ss_dssp             EEEEEE---STTEEEEEETTTTEEEEEEE----TT--EE-----------------------------------------
T ss_pred             ceeEEEE--CCCEEEEEEcCCCcEEEEEEeccccccchh-----------------------------------------
Confidence            6778883  5565655555789999998854321 1100                                         


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc--CceeeEEeecCC-CccCCCCCCe
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDDLTEVI  266 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~i  266 (497)
                      ..+-+.+.          +...+...+-.++|.+.++.|+.+ ...-..+|.+..  ............ .........+
T Consensus       104 ~~~~~~l~----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen  104 DVQKISLG----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             EEEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             hceEEecc----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            00001110          012345568899999988888777 666666666652  122222111110 0012233557


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  346 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i  346 (497)
                      .+++++|...++++....+..|..+| .+|+..    ..+........    +...-...-.|+|.++|++.+++.-+..
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~----~~~~L~~g~~g----l~~~~~QpEGIa~d~~G~LYIvsEpNlf  244 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVV----SSLSLDRGFHG----LSKDIPQPEGIAFDPDGNLYIVSEPNLF  244 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EE----EEEE-STTGGG-----SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE----EEEEeCCcccC----cccccCCccEEEECCCCCEEEEcCCceE
Confidence            89999998757777788889999999 555543    22221000000    0001134678999999988877754655


Q ss_pred             EEE
Q 010933          347 KLW  349 (497)
Q Consensus       347 ~lw  349 (497)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.04  E-value=0.00024  Score=67.61  Aligned_cols=183  Identities=18%  Similarity=0.249  Sum_probs=108.3

Q ss_pred             CcceEEEEEcCCCCEEEEee---cC-CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGD---RG-GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ...+..-+|+|+++.++.-+   .. ..+.++++.+++.                     ..+..+.++.          
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~---------------------~~i~~~~g~~----------  240 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR---------------------PVILNFNGNN----------  240 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc---------------------ceeeccCCcc----------
Confidence            45777788999998876653   22 3689999988754                     3344455555          


Q ss_pred             cccceeEEEEEecCCCCEEEEE-eCCccEEEe--ecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILS-TNDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           ...+|  +|||+.++.+ ..|+...||  |+.++....+                                    
T Consensus       241 -----~~P~f--spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L------------------------------------  277 (425)
T COG0823         241 -----GAPAF--SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL------------------------------------  277 (425)
T ss_pred             -----CCccC--CCCCCEEEEEECCCCCccEEEEcCCCCcceec------------------------------------
Confidence                 45678  6888888776 467766666  5554442211                                    


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCccCceeeEEeecCCCccC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                                ..-.+.-..-.|+|+|+.++..  ..|.  |.+++.+ ++.. ..+     +..
T Consensus       278 --------------------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-g~~~-~ri-----T~~  324 (425)
T COG0823         278 --------------------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-GSQV-TRL-----TFS  324 (425)
T ss_pred             --------------------------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC-CCce-eEe-----ecc
Confidence                                      1111111245789999999875  5554  4555555 2322 221     122


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeC-CCe--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  337 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  337 (497)
                      .-...  .-.|+|+| .+|+..+. +|.  |.+.|+.++...    +.+..              ........+.++|+.
T Consensus       325 ~~~~~--~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~--------------~~~~e~ps~~~ng~~  383 (425)
T COG0823         325 GGGNS--NPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGKI----RILTS--------------TYLNESPSWAPNGRM  383 (425)
T ss_pred             CCCCc--CccCCCCC-CEEEEEeccCCceeeEEeccCCCCcE----EEccc--------------cccCCCCCcCCCCce
Confidence            22222  66899999 77777664 354  666666655421    33333              123455678888888


Q ss_pred             EEEEe
Q 010933          338 LLSRD  342 (497)
Q Consensus       338 l~~~~  342 (497)
                      ++..+
T Consensus       384 i~~~s  388 (425)
T COG0823         384 IMFSS  388 (425)
T ss_pred             EEEec
Confidence            77653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.98  E-value=0.0036  Score=54.78  Aligned_cols=221  Identities=10%  Similarity=0.039  Sum_probs=109.5

Q ss_pred             cCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 010933          211 HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  288 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  288 (497)
                      .+-...+..++|+|+.+.|++ . ..+.|..++.+  ++.+..+.     +.+ .+..-.+++..++ .++++.-.++.+
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~-----l~g-~~D~EgI~y~g~~-~~vl~~Er~~~L   88 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP-----LDG-FGDYEGITYLGNG-RYVLSEERDQRL   88 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS--SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe-----CCC-CCCceeEEEECCC-EEEEEEcCCCcE
Confidence            455667999999998665554 5 77888777765  55555542     334 3456888998877 666655558999


Q ss_pred             EEEEccCCccccc--ccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCC--CCceeeee--
Q 010933          289 RLVDMRQSALCDH--SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPVATF--  361 (497)
Q Consensus       289 ~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~--~~~~~~~~--  361 (497)
                      .++++........  ....+..        .....+...+-.++|+|.++.|+.+.+ .-..+|.+..  ....+...  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred             EEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence            9999854321110  0011111        000123456889999998777776644 5566666652  11111111  


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccc
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  440 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  440 (497)
                      ......         .....+..+++++|. +.+++-...+..|..+| .+|+.+ .          .+.......+   
T Consensus       161 ~~~~~~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~-~----------~~~L~~g~~g---  216 (248)
T PF06977_consen  161 QDLDDD---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVV-S----------SLSLDRGFHG---  216 (248)
T ss_dssp             HHHH-H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EE-E----------EEE-STTGGG---
T ss_pred             cccccc---------cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE-E----------EEEeCCcccC---
Confidence            111100         012223358999996 45666677788899999 444322 1          1111110000   


Q ss_pred             cccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          441 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       441 ~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                                              +...-..-..|+|.++|++.+++=-|-+|+|.
T Consensus       217 ------------------------l~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f~  248 (248)
T PF06977_consen  217 ------------------------LSKDIPQPEGIAFDPDGNLYIVSEPNLFYRFE  248 (248)
T ss_dssp             -------------------------SS---SEEEEEE-TT--EEEEETTTEEEEEE
T ss_pred             ------------------------cccccCCccEEEECCCCCEEEEcCCceEEEeC
Confidence                                    00001134579999999887777677777773

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.97  E-value=0.0076  Score=56.97  Aligned_cols=246  Identities=13%  Similarity=0.073  Sum_probs=120.4

Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheec--cccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      .|+.+.|  .++...|+.+...|.|-||.+...+.-.  .........-+.+...                         
T Consensus         3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~-------------------------   55 (395)
T PF08596_consen    3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLN-------------------------   55 (395)
T ss_dssp             -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S--GG-------------------------
T ss_pred             eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccccc-------------------------
Confidence            4888999  5777889999999999999887654221  0000000000000000                         


Q ss_pred             CcceEEEeecCC---c---cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCC-ccC
Q 010933          189 NMATKIANVGNS---V---HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMD  260 (497)
Q Consensus       189 ~~~~~~~~~~~~---~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~  260 (497)
                      ++.-.+-|+...   .   ...+...+ ....++|++++.+.-| +++.| .+|.+.|.|++ +...+..-.+... .-.
T Consensus        56 ~~~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~  132 (395)
T PF08596_consen   56 NSPGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSK  132 (395)
T ss_dssp             GSS-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-S
T ss_pred             CCCcceEEehhhCCcccccccCchhhe-eccCCcEeEEecCCCc-EEEEEecCCcEEEEECC-CCeEEeecccccccccc
Confidence            001112222211   0   11233333 5558899999998666 88899 99999999998 5555544333321 112


Q ss_pred             CCCCCeEEEEEeC-----CC--CcEEEEEeCCCeEEEEEccC---CcccccccceecccccccCCccccccccccccEEE
Q 010933          261 DLTEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       261 ~~~~~i~~~~~~~-----~~--~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      .....++++.|.-     |+  +-.+++|+..|.+.+|.+.-   +..........             ..+.+.+..+.
T Consensus       133 ~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-------------~~~~~~i~~I~  199 (395)
T PF08596_consen  133 SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-------------TNHDSPILSII  199 (395)
T ss_dssp             S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---------------SS----EEE
T ss_pred             ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-------------ccCCCceEEEE
Confidence            2446688888862     11  14688899999999998752   11111000110             11123333332


Q ss_pred             -EeeC---------------------CCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933          331 -FAND---------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  388 (497)
Q Consensus       331 -~s~~---------------------g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (497)
                       |+.+                     ..++++.++..+|++...+ .+......  ...  ..|           ..+.+
T Consensus       200 ~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~--~~~--~~~-----------~~~~v  263 (395)
T PF08596_consen  200 PINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSF--DDP--FLC-----------SSASV  263 (395)
T ss_dssp             EEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE---SS---EEE-----------EEEEE
T ss_pred             EEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceee--ccc--ccc-----------ceEEE
Confidence             2111                     1256667789999999875 44433332  111  011           23444


Q ss_pred             -----cCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          389 -----SGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       389 -----s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                           ...+..|++-..+|.|++|.+..-+++
T Consensus       264 v~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  264 VPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             EEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             EeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence                 235678899999999999999976444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.97  E-value=3.1e-05  Score=73.18  Aligned_cols=77  Identities=19%  Similarity=0.373  Sum_probs=62.1

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +.....|.|++++|+.+.|+.|+.||+|.+||...+.                         +.+....           
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------------------------t~~~ka~-----------  299 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------------------------TLLAKAE-----------  299 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------------------------eeeeeec-----------
Confidence            3467899999999999999999999999999987652                         2222222           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  144 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~  144 (497)
                       -..+.++|  .|+|..+++|+..|.+.+||+.-..
T Consensus       300 -~~P~~iaW--Hp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  300 -FIPTLIAW--HPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             -ccceEEEE--cCCCcEEEEEcCCceEEEEEeecCc
Confidence             34688999  5889999999999999999986543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00029  Score=67.91  Aligned_cols=216  Identities=13%  Similarity=0.158  Sum_probs=122.5

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      |...|.--+++..+++|+.|+..|.+++|+..+++..                      .....+-.            +
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----------------------~~~~~~~~------------~   77 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----------------------KLKNEGAT------------G   77 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhh----------------------cccccCcc------------c
Confidence            4556655666778999999999999999998776420                      11111111            3


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .+..+..  +++..++|+|+..|.|.++.+..+.....                                          
T Consensus        78 ~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~------------------------------------------  113 (726)
T KOG3621|consen   78 ITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDL------------------------------------------  113 (726)
T ss_pred             eEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCcc------------------------------------------
Confidence            3344444  56777888888999999998876331110                                          


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                       +.+            ...-..|...|++++|++++..+.+| ..|.|.+-.++. ...   .-.+...+......|..+
T Consensus       114 -~~~------------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s-~~~---~~~~~q~il~~ds~IVQl  176 (726)
T KOG3621|consen  114 -DYV------------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS-RQA---FLSKSQEILSEDSEIVQL  176 (726)
T ss_pred             -eee------------ccccccCCceEEEEEecccccEEeecCCCceEEEEEech-hhh---hccccceeeccCcceEEe
Confidence             000            00014588999999999999999999 899999888773 111   001111233345666666


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-----CCEEEEEecC
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDYM  344 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~~  344 (497)
                      .+...   +|++++.- ...+++++.+..     +.+.. .    .+.     ...-...+|-|.     ...|+++. -
T Consensus       177 D~~q~---~LLVStl~-r~~Lc~tE~eti-----~QIG~-k----~R~-----~~~~~GACF~~g~~~~q~~~IycaR-P  236 (726)
T KOG3621|consen  177 DYLQS---YLLVSTLT-RCILCQTEAETI-----TQIGK-K----PRK-----SLIDFGACFFPGQCKAQKPQIYCAR-P  236 (726)
T ss_pred             ecccc---eehHhhhh-hhheeecchhHH-----HHhcC-C----CcC-----CccccceEEeeccccCCCceEEEec-C
Confidence            66542   33333322 234555554321     11111 0    000     011234455553     23455543 4


Q ss_pred             eEEEEecCCCCceeeee
Q 010933          345 NLKLWDIRMDSTPVATF  361 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~  361 (497)
                      ..|+|..+..|..+++.
T Consensus       237 G~RlWead~~G~V~~Th  253 (726)
T KOG3621|consen  237 GLRLWEADFAGEVIKTH  253 (726)
T ss_pred             CCceEEeecceeEEEee
Confidence            57888776656665554

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.87  E-value=0.0075  Score=59.05  Aligned_cols=30  Identities=17%  Similarity=0.121  Sum_probs=25.7

Q ss_pred             eEEEEcCCCCEEEEEeC-CCcEEEEEcCCCC
Q 010933          384 FECSVSGDGLHFATGSY-SNLLRIFSHGVGS  413 (497)
Q Consensus       384 ~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~  413 (497)
                      ..+.++|||+++++++. ++.+.|.|+.+.+
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            58999999999886665 9999999998754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.86  E-value=0.026  Score=53.28  Aligned_cols=78  Identities=15%  Similarity=0.143  Sum_probs=56.7

Q ss_pred             ccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC----C---
Q 010933          320 TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----D---  391 (497)
Q Consensus       320 ~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~---  391 (497)
                      ......+.+++.+|++++.|+.+. |+|.++|+.. +..++.+++.....                 +.|-.    .   
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAq-----------------c~wi~~~~~~~~~  365 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQ-----------------CGWIEVPEEGDRD  365 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccce-----------------EEEEEeecccccc
Confidence            344566889999999988888765 9999999986 88888888877642                 22211    0   


Q ss_pred             -------------CCE-EEEEeCCCcEEEEEcCCCCcc
Q 010933          392 -------------GLH-FATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       392 -------------~~~-l~s~~~dg~i~vw~~~~~~~~  415 (497)
                                   ..+ ++-+-.-|.|-||.++++..+
T Consensus       366 ~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  366 RSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             cccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEE
Confidence                         112 345667899999999998554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.85  E-value=0.0076  Score=53.30  Aligned_cols=109  Identities=13%  Similarity=0.048  Sum_probs=60.1

Q ss_pred             CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC---CCCCeEEEEEeCCCCcEEEEEeCCCe-EEEEEccCCcccc
Q 010933          226 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD---LTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCD  300 (497)
Q Consensus       226 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~  300 (497)
                      +..++.+ .++.|..+|.++ ++.+-...........   ....+..-....++  .++.++.++. +.+ |+.+++.. 
T Consensus       122 ~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~~-  196 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEKL-  196 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEEE-
T ss_pred             cCEEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCEE-
Confidence            6777777 799999999994 4443332211100000   00111222222333  5666677775 555 99998632 


Q ss_pred             cccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933          301 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  359 (497)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~  359 (497)
                           +.. .            ...+... ...++..|+.++ ++.|..||+++ ++.+.
T Consensus       197 -----w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~W  236 (238)
T PF13360_consen  197 -----WSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVVW  236 (238)
T ss_dssp             -----EEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEEE
T ss_pred             -----EEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEEe
Confidence                 322 0            0112221 345677777765 69999999997 76654

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.84  E-value=0.012  Score=56.43  Aligned_cols=217  Identities=11%  Similarity=0.052  Sum_probs=112.9

Q ss_pred             CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE-
Q 010933          213 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV-  291 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~-  291 (497)
                      .......++++|+|+.++.+.||...++... .-+...            .+.-..++|.+.  +.+|+-...+.|.++ 
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k~------------~G~g~~~vw~~~--n~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNKA------------FGSGLSFVWSSR--NRYAVLESSSTIKIYK   95 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEEE------------EEE-SEEEE-TS--SEEEEE-TTS-EEEEE
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCcccc------------cCceeEEEEecC--ccEEEEECCCeEEEEE
Confidence            3445789999999999999989998888844 222221            133456789985  468888878899996 


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL  371 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~  371 (497)
                      ++.... .    +.+..              ...+..+  -+ |.+|+..+++.|.+||..+ ++.+.++....  +   
T Consensus        96 n~~~~~-~----k~i~~--------------~~~~~~I--f~-G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v---  147 (443)
T PF04053_consen   96 NFKNEV-V----KSIKL--------------PFSVEKI--FG-GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V---  147 (443)
T ss_dssp             TTEE-T-T-----------------------SS-EEEE--E--SSSEEEEETTEEEEE-TTT---EEEEESS-E------
T ss_pred             cCcccc-c----eEEcC--------------CcccceE--Ec-CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C---
Confidence            343221 1    12222              0112223  22 8888888778999999997 88898887553  1   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------Cc-ceEEEeccCcceeeeEeecCCCccccc
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SA-GGITVEAGKNENRKPILQAAPRARRSS  441 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~  441 (497)
                                  ..+.|++++++++-.+.+ .++|++.+..         -+ ....+..-...|.+.+|.-  + .   
T Consensus       148 ------------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~--d-~---  208 (443)
T PF04053_consen  148 ------------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE--D-C---  208 (443)
T ss_dssp             ------------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET--T-E---
T ss_pred             ------------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc--C-E---
Confidence                        479999999999988765 7777775432         01 1122222256677777764  2 1   


Q ss_pred             ccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEE
Q 010933          442 LSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH  495 (497)
Q Consensus       442 ~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~  495 (497)
                         |........+.+ .++..........++.=+...|..+.+.... +.+++.+
T Consensus       209 ---fiYtT~~~lkYl-~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  209 ---FIYTTSNHLKYL-VNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY  259 (443)
T ss_dssp             ---EEEE-TTEEEEE-ETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred             ---EEEEcCCeEEEE-EcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence               333333332223 2223333344455666667777666666555 3344443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.78  E-value=0.012  Score=54.28  Aligned_cols=167  Identities=13%  Similarity=0.066  Sum_probs=73.1

Q ss_pred             CCCCeeEEEeCCC-CCEEEEE----cCC-eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--
Q 010933          213 HDFNINSISNNSD-CETFVSA----DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--  284 (497)
Q Consensus       213 h~~~v~~~~~~~~-~~~l~~~----~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  284 (497)
                      ....+.-+.|+|. ..+|+.|    .+. .-+||-++..+.....+.     -......+..=-|.|+| ..|..-+.  
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-----~~~~~e~~gHEfw~~DG-~~i~y~~~~~  259 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-----RRMEGESVGHEFWVPDG-STIWYDSYTP  259 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-----cCCCCcccccccccCCC-CEEEEEeecC
Confidence            3556778899984 4455555    233 237787765554444321     11123455666799999 54443222  


Q ss_pred             ---CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-Eec--C--------------
Q 010933          285 ---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M--------------  344 (497)
Q Consensus       285 ---dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~--~--------------  344 (497)
                         +..|.-+|+.+++..    .....               ......-.++||++++. |+|  .              
T Consensus       260 ~~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p  320 (386)
T PF14583_consen  260 GGQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP  320 (386)
T ss_dssp             TT--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------
T ss_pred             CCCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence               445667777776432    22222               12334445678887765 333  1              


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHG  410 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~  410 (497)
                      -|++++++. +.. ..+..|.....++..-.....    -...|+|||++++ +....|...||=++
T Consensus       321 ~i~~~~~~~-~~~-~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  321 WIYLFDVEA-GRF-RKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EEEEEETTT-TEE-EEEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             EEEEecccc-Cce-eeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            455677764 332 223223211000000000000    2589999999876 45557887777554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.00044  Score=66.70  Aligned_cols=123  Identities=11%  Similarity=0.145  Sum_probs=88.7

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933          212 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  290 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  290 (497)
                      .+...|.--++...+++++.| .-|.+++|+.. ++.....      +..+-...+.....+++. .++|.|+..|.|.+
T Consensus        31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v  102 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKL------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSV  102 (726)
T ss_pred             cCcceEEEEEeecCCceEEEecccceEEEEecC-chhhhcc------cccCccceEEEEEecchh-HhhhhhcCCceEEe
Confidence            344555555667788999999 99999999988 5544432      233455666777888887 89999999999999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCC
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  353 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~  353 (497)
                      +-+..+.... ....-..+          ..|...|++++|++++..+++|++ |.|.+-.+..
T Consensus       103 ~ql~~~~p~~-~~~~t~~d----------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  103 FQLNKELPRD-LDYVTPCD----------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ehhhccCCCc-ceeecccc----------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            9887743211 10111110          126688999999999999999987 9999888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.76  E-value=0.0015  Score=64.53  Aligned_cols=117  Identities=9%  Similarity=-0.010  Sum_probs=85.5

Q ss_pred             cccccCccccCCCCCcccccccccc--cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 010933          163 LLAEKNFMNEHNPPSFAHGYHLEWT--ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  239 (497)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~i  239 (497)
                      ...++......+-|...+++.+.++  .+|.+.++--...    +.+-.  .-+-.+.+++|+|..-.|+.| .-|.+.+
T Consensus        12 ~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGE----Pqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v   85 (1416)
T KOG3617|consen   12 LDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGE----PQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDV   85 (1416)
T ss_pred             ccccccccccccCCCCceeEEEEecCCCCceEEEEecCCC----CCccc--ccceehhhhccChHHHHHhhccccceeEE
Confidence            3445556667777888888887764  4557777654322    22211  112345679999999889999 9999999


Q ss_pred             EeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933          240 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  294 (497)
Q Consensus       240 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~  294 (497)
                      |... ......+       ...|..+|..+.|+++| ..++++..-|.+.+|...
T Consensus        86 ~~~~-~~e~htv-------~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   86 QKTN-TTETHTV-------VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EecC-Cceeeee-------ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            9987 3333332       56799999999999999 999999999999999876

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.75  E-value=0.0023  Score=64.78  Aligned_cols=103  Identities=18%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010933          228 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  306 (497)
Q Consensus       228 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  306 (497)
                      .-+.| .+..++.||.+..+..+  +... ...-.......|++-+.+|  +||+|+.+|.||+||- .|....   .. 
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~--v~~~-~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AK---T~-  613 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKL--VDSQ-SKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAK---TA-  613 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCce--eecc-ccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhh---hc-
Confidence            45567 99999999999654221  1100 0011244567788877776  8999999999999993 332111   12 


Q ss_pred             cccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933          307 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  352 (497)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~  352 (497)
                                  +++...+|..|..+.||+|+++..+..+.|++..
T Consensus       614 ------------lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  614 ------------LPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ------------CCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence                        2333478999999999999999888888888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.72  E-value=0.035  Score=50.29  Aligned_cols=241  Identities=12%  Similarity=0.015  Sum_probs=125.6

Q ss_pred             EEEeCCCCCEEEE----------E-cCCeEEEEeCccCceeeEEeecCCC-ccCCCCCCeEEEEEeCCCCcEEEEEeC--
Q 010933          219 SISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSS--  284 (497)
Q Consensus       219 ~~~~~~~~~~l~~----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~--  284 (497)
                      .+..+|+++.+.+          | ..-.|.+||.. +-....-+.+++. ... .......++++.++ +++++...  
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TP  116 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTP  116 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B---BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchhe-ecccccceEEccCC-cEEEEEccCC
Confidence            3567899998875          4 55689999998 4444444444432 221 11223445788888 77766544  


Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEecCeEEEEecCCCCceeeeee
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDYMNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~i~lwd~~~~~~~~~~~~  362 (497)
                      -..|.|.|+..++..    ..+..                 --|...-|  +..+.+.|.||.+.-..+...++...+..
T Consensus       117 a~SVtVVDl~~~kvv----~ei~~-----------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVV----GEIDT-----------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST  175 (342)
T ss_dssp             SEEEEEEETTTTEEE----EEEEG-----------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred             CCeEEEEECCCCcee----eeecC-----------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence            467889999887654    33332                 12222223  34456667889999999987677763322


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEecc----------CcceeeeEe
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAG----------KNENRKPIL  431 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~----------~~~v~~~~~  431 (497)
                      .-..        ..++.++  ..-+++..+..++--+.+|.|+--|+...... ...+..-          .+--.-+++
T Consensus       176 ~~F~--------~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~  245 (342)
T PF06433_consen  176 KVFD--------PDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY  245 (342)
T ss_dssp             EESS--------TTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred             cccC--------CCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence            1111        1122333  34556666555666888999999888765322 1111100          011122344


Q ss_pred             ecCCCcccccccceeEeecc-----Cc-eec--CCC-CCcccccccCCCeEEEEEecCCC-EEEEEe--CCceEEEeC
Q 010933          432 QAAPRARRSSLSNLTRGLYR-----QA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA  497 (497)
Q Consensus       432 ~~~~~~~~~~~~~l~~~~~d-----~~-~iw--~~~-~~~~~~~~~~~~i~~l~~~p~~~-~la~~~--~~~~~i~~~  497 (497)
                      .+. .+++   -+|.-.+.+     .. .||  ... +....-.....++.+|+.+.+.+ +|.+.+  ++.+++|.+
T Consensus       246 ~~~-~~rl---yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  246 HAA-SGRL---YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             ETT-TTEE---EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             ccc-cCeE---EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence            442 2222   012222222     23 677  111 12222233455788999999865 665444  456999874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.03  Score=53.77  Aligned_cols=147  Identities=8%  Similarity=0.054  Sum_probs=73.0

Q ss_pred             CCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933          226 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  305 (497)
Q Consensus       226 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  305 (497)
                      |.+|....++.|.+||++ .++.+..++         -.+|..+.|++++ .+++..+.+ .+.+++.......    . 
T Consensus       117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~----~-  179 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWE-TGKLIRRID---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVA----A-  179 (443)
T ss_dssp             SSSEEEEETTEEEEE-TT-T--EEEEES---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHH----H-
T ss_pred             CcEEEEECCCCEEEEEhh-HcceeeEEe---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcc----c-
Confidence            777777766699999999 556665431         1248999999999 888888766 5777765432000    0 


Q ss_pred             ecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeE
Q 010933          306 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  385 (497)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (497)
                      .+. ..-........+....|.+..|..+  .++-.+.+.++-  +.. + ....+..-....               .=
T Consensus       180 ~~~-~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~-G-e~~~i~~ld~~~---------------yl  237 (443)
T PF04053_consen  180 IPE-EGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVN-G-ETGIIAHLDKPL---------------YL  237 (443)
T ss_dssp             BTT-TB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EET-T-EEEEEEE-SS-----------------EE
T ss_pred             ccc-cCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEc-C-CcceEEEcCCce---------------EE
Confidence            000 0000001111122357888999865  444444446665  322 2 233333222221               35


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          386 CSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       386 ~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      +.+.+..+.|.....|+.+..+.+..
T Consensus       238 lgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  238 LGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEEEccCCEEEEEECCCCEEEEEECH
Confidence            77777777888888888888887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.62  E-value=0.0097  Score=58.29  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=53.9

Q ss_pred             ccccEEEEeeCCCEEEEEec--CeEEEEecCCCCc-----------eeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933          324 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                      .....+.++|||+++++++.  ..+.|.|+.+...           .+.+.....++                ...+|.+
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg  384 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG  384 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence            45788999999999998753  9999999976221           12222222222                4689999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCC
Q 010933          391 DGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       391 ~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      +|....|-.-|..|..||+..
T Consensus       385 ~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        385 RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCEEEeEeecceeEEEehHH
Confidence            999888888999999999876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.52  E-value=0.037  Score=52.16  Aligned_cols=277  Identities=12%  Similarity=0.193  Sum_probs=132.7

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccccc----Ccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSH----EPEFDYLKSLE  107 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~~~~~~~~~  107 (497)
                      ...+....|||+|+++|... ++.|.+++..++....                      .+..|-    .+..+++-.-+
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~----------------------lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ----------------------LTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE----------------------SES--TTTEEESB--HHHHHH
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE----------------------eccccceeEEcCccceecccc
Confidence            46788999999999999876 6789999887664311                      111110    00011111111


Q ss_pred             cccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchh-------eeccccCCCCCccccccccccccCccccCCCCCcc
Q 010933          108 IEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  179 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (497)
                      +-+.-..+.|  +||+++|+... .+..|+.+.+....       .......+.                          
T Consensus        99 v~~~~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk--------------------------  150 (353)
T PF00930_consen   99 VFDRRSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK--------------------------  150 (353)
T ss_dssp             TSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B--------------------------
T ss_pred             ccccccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC--------------------------
Confidence            1123356788  78999999885 45666666543211       011111111                          


Q ss_pred             cccccccccCcceEEEeecCCccceeeee-eccCCCCCeeEEEeCCCCCEEEE-E--c---CCeEEEEeCccCceeeEEe
Q 010933          180 HGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETFVS-A--D---DLRINLWNLEISDQCFNIV  252 (497)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~-~--~---d~~i~iwd~~~~~~~~~~~  252 (497)
                         .|.-.+.-.+.++++......+.... -.......+..+.|.++++.|+. -  .   ...+.+.|..++. .....
T Consensus       151 ---~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~  226 (353)
T PF00930_consen  151 ---AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE-TRVVL  226 (353)
T ss_dssp             ---TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT-CEEEE
T ss_pred             ---CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc-eeEEE
Confidence               01111122345566654432211100 01234557889999999984443 1  2   2345566765322 22221


Q ss_pred             ecCCCccCCCCCCeEEEEEe-CCCCcEEEEEeCCCe--EEEEEccCCcccccccceecccccccCCcccccccccccc-E
Q 010933          253 DMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-D  328 (497)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~  328 (497)
                      ...   ..+--..-....+. +++..+|.....||.  |.+++...+..     +.+..             ..-.|. -
T Consensus       227 ~e~---~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-----~~lT~-------------G~~~V~~i  285 (353)
T PF00930_consen  227 EET---SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-----RQLTS-------------GDWEVTSI  285 (353)
T ss_dssp             EEE---SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-----EESS--------------SSS-EEEE
T ss_pred             Eec---CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-----ecccc-------------Cceeeccc
Confidence            111   11111222344554 666456666666775  44555555431     11111             012343 4


Q ss_pred             EEEeeCCCEEE-EEe--c-CeEEEEecCCC-CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          329 IKFANDGQHLL-SRD--Y-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       329 ~~~s~~g~~l~-~~~--~-~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      +.++++++.|. ++.  + ..-.||.+... +..+..+.......               ..+.|||++++++-..
T Consensus       286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---------------~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  286 LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---------------YSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---------------EEEEE-TTSSEEEEEE
T ss_pred             ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---------------eEEEECCCCCEEEEEE
Confidence            67788877654 343  2 45556655543 45555555443321               2799999999887433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.51  E-value=0.069  Score=48.40  Aligned_cols=229  Identities=12%  Similarity=0.064  Sum_probs=120.6

Q ss_pred             CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010933          224 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS  302 (497)
Q Consensus       224 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  302 (497)
                      ..++.|+.| ++| +++++........++.         +...|..+...|+- +.|++-+ |+.++++++..-......
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence            457788888 888 8999984233333331         22349999999987 6555554 599999999865433210


Q ss_pred             cceecccccccCCccccccccccccEEE---EeeCCCEEEEEecCeEEEEecCCC---C-ceeeeeeecccccccccccC
Q 010933          303 ARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLY  375 (497)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~g~~l~~~~~~~i~lwd~~~~---~-~~~~~~~~~~~~~~~~~~~~  375 (497)
                      . ....... ...... -.....+...+   -...+..|+++....|.+|.....   . +..+++......        
T Consensus        73 ~-~~~~~~~-~~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~--------  141 (275)
T PF00780_consen   73 A-PLAFPKS-RSLPTK-LPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP--------  141 (275)
T ss_pred             c-ccccccc-cccccc-ccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc--------
Confidence            0 0000000 000000 00012233333   122345667777789999988642   1 345555544433        


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc---------ceeeeEeecCCCccccccccee
Q 010933          376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLT  446 (497)
Q Consensus       376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~  446 (497)
                              ..++|.  ++.|+.|..+ ...+.|+.++... ..+.....         ....+....-.++.+     |.
T Consensus       142 --------~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----Ll  204 (275)
T PF00780_consen  142 --------SSIAFL--GNKICVGTSK-GFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF-----LL  204 (275)
T ss_pred             --------EEEEEe--CCEEEEEeCC-ceEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceE-----EE
Confidence                    578888  5567777654 4778899876442 22211110         111121111112232     33


Q ss_pred             EeeccCceec--CCCCCcc-cccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          447 RGLYRQAHEN--SSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       447 ~~~~d~~~iw--~~~~~~~-~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      +-  +...++  ..|+... .....+....++++  ..++|.+..++.+.||+
T Consensus       205 ~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~  253 (275)
T PF00780_consen  205 CY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRS  253 (275)
T ss_pred             Ee--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEE
Confidence            22  222222  3333332 34455556677777  46788888888899886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.49  E-value=0.0041  Score=53.72  Aligned_cols=86  Identities=12%  Similarity=0.084  Sum_probs=52.4

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCCe----EEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCC
Q 010933          213 HDFNINSISNNSDCETFVSA-DDLR----INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRG  286 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~-~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg  286 (497)
                      +.-.|..++.-++|+.++.+ ..|.    --+--....++.++.+++++.........|-+++.+.+. .+++.. -..+
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~GN  302 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRGN  302 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCCC
Confidence            34467778888888877765 3321    111122224555666555554444555678888888665 444444 4456


Q ss_pred             eEEEEEccCCccc
Q 010933          287 FVRLVDMRQSALC  299 (497)
Q Consensus       287 ~i~v~d~~~~~~~  299 (497)
                      ...+||..+|..+
T Consensus       303 ~~vi~da~tG~vv  315 (366)
T COG3490         303 RAVIWDAATGAVV  315 (366)
T ss_pred             eEEEEEcCCCcEE
Confidence            7889999999754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.44  E-value=0.15  Score=50.51  Aligned_cols=109  Identities=13%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-----------------
Q 010933          278 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-----------------  340 (497)
Q Consensus       278 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-----------------  340 (497)
                      .++.++.+|.+...|.++|+.+.+....                    ...++.+| +..++.                 
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--------------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~  361 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV--------------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCK  361 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee--------------------ccccccCC-ceEEEccccccccCcccccCCCC
Confidence            5778888999999999999865321100                    01122222 111111                 


Q ss_pred             -EecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          341 -RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       341 -~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                       ..+|.+.-.|+.+ ++.+.+.........  ...  ..... ...+..  .+..|+.++.||.|+.+|.++|+.+
T Consensus       362 ~~~~G~l~AlD~~t-G~~~W~~~~~~~~~~--~~~--g~~~~-~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         362 KPGKGGLAALDPKT-GKVVWEKREGTIRDS--WNI--GFPHW-GGSLAT--AGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             CCCceEEEEEeCCC-CcEeeEeeCCccccc--ccc--CCccc-CcceEe--cCCeEEEECCCCeEEEEECCCCcee
Confidence             1236777788876 776666553311000  000  00000 001222  4578999999999999999999665

The alignment model contains an 8-bladed beta-propeller.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.43  E-value=0.034  Score=56.71  Aligned_cols=143  Identities=13%  Similarity=0.187  Sum_probs=84.0

Q ss_pred             cEEEEE-eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-------CEEEEE-ecCeEE
Q 010933          277 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-------QHLLSR-DYMNLK  347 (497)
Q Consensus       277 ~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-------~~l~~~-~~~~i~  347 (497)
                      ++|+.. .....|+-.|+..|+.+    ..|..+..            .+|  ..+.|+.       .-.+.| +++.+.
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~~------------~~v--~~~~p~~K~aqlt~e~tflGls~n~lf  555 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHDD------------IPV--VDIAPDSKFAQLTNEQTFLGLSDNSLF  555 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEE----EEeecCCC------------cce--eEecccccccccCCCceEEEECCCceE
Confidence            454443 34678999999999877    56665221            122  3333432       223344 669999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      .||.+..+..+..-..+..         ....-|  .+++-+.+| +||.|+.+|.||+||- .+..-.           
T Consensus       556 riDpR~~~~k~v~~~~k~Y---------~~~~~F--s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AK-----------  611 (794)
T PF08553_consen  556 RIDPRLSGNKLVDSQSKQY---------SSKNNF--SCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAK-----------  611 (794)
T ss_pred             EeccCCCCCceeecccccc---------ccCCCc--eEEEecCCc-eEEEEeCCCcEEeecc-cchhhh-----------
Confidence            9999874432221112211         111112  466666665 7999999999999993 221110           


Q ss_pred             eeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                                                         ..+++...+|.+|..+.||++|++.+..-|.++.
T Consensus       612 -----------------------------------T~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  612 -----------------------------------TALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             -----------------------------------hcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence                                               1122444588888888888888777776666553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.35  E-value=0.07  Score=49.82  Aligned_cols=120  Identities=12%  Similarity=0.154  Sum_probs=54.5

Q ss_pred             cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--CCCCcEEEEEeCCCeEEEEEc-cCCcccccccceeccc
Q 010933          233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDA  309 (497)
Q Consensus       233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~~  309 (497)
                      ...++.+||+. ..+..+++++.     ........+.|.  |+...-++.+-....|..|-- ..++-..+  +++..-
T Consensus       220 yG~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~ip  291 (461)
T PF05694_consen  220 YGHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDIP  291 (461)
T ss_dssp             S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE-
T ss_pred             ccCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee--EEEECC
Confidence            35689999999 77888887644     222334566664  443122443334444544433 33321111  222210


Q ss_pred             cccc------CCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceeee
Q 010933          310 AESH------GSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT  360 (497)
Q Consensus       310 ~~~~------~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~~  360 (497)
                      ....      .-...|..-..-|+.+.+|.|.++|..+.  .|.|+.||+....++...
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence            0000      00001112235689999999999999885  499999999865555444

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.32  E-value=0.12  Score=47.93  Aligned_cols=155  Identities=9%  Similarity=0.011  Sum_probs=72.5

Q ss_pred             EEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--CCCCcEEEEEeC------------
Q 010933          220 ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSS------------  284 (497)
Q Consensus       220 ~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~------------  284 (497)
                      ..++|+.+.++.- .+..++-.|+++ .+...++       ...+..+-...|.  .++ ..++-.-.            
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy-------~~p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~  156 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVY-------EVPDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWK  156 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT---EEEEE-------E--TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHH
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCc-CcEEEEE-------ECCcccccccceeeCCCc-cEEEEEEEeehhccCccccH
Confidence            4556777787766 677888888884 3333332       2223333334443  334 44433211            


Q ss_pred             ----------CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEec---Ce--EEE
Q 010933          285 ----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY---MN--LKL  348 (497)
Q Consensus       285 ----------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~---~~--i~l  348 (497)
                                ...|.-.|+.+|+..    .++..              ...+..+.|+|.. .+|+.+-+   ..  -||
T Consensus       157 ~f~e~~~a~p~~~i~~idl~tG~~~----~v~~~--------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri  218 (386)
T PF14583_consen  157 GFREFYEARPHCRIFTIDLKTGERK----VVFED--------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI  218 (386)
T ss_dssp             HHHHHHHC---EEEEEEETTT--EE----EEEEE--------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred             HHHHHHhhCCCceEEEEECCCCcee----EEEec--------------CccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence                      123444455555432    33333              3577889999954 45555532   22  378


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCCc
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSA  414 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~vw~~~~~~~  414 (497)
                      |-+++++...+.+..+...  ..           +..=-|.|||..|.--+     .+..|.-+|+.+++.
T Consensus       219 W~i~~dg~~~~~v~~~~~~--e~-----------~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  219 WTINTDGSNVKKVHRRMEG--ES-----------VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             EEEETTS---EESS---TT--EE-----------EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             EEEEcCCCcceeeecCCCC--cc-----------cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            8877767766666544321  11           13446889998776433     245677788888744

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.29  E-value=0.27  Score=50.31  Aligned_cols=223  Identities=12%  Similarity=0.096  Sum_probs=115.7

Q ss_pred             CCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC--------------CeEEEE
Q 010933          226 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------GFVRLV  291 (497)
Q Consensus       226 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------g~i~v~  291 (497)
                      ...++++..+.+.+.-++.-++ ..+     .+. ......+.+++.+.. .++.+.+..              ..++++
T Consensus       684 ~d~l~~~~~~~l~i~tid~iqk-l~i-----rtv-pl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl  755 (1096)
T KOG1897|consen  684 PDSLASANGGALTIGTIDEIQK-LHI-----RTV-PLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL  755 (1096)
T ss_pred             CceEEEecCCceEEEEecchhh-cce-----eee-cCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence            4466777777888877662222 111     111 123445677777743 444444321              135566


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe----------c-CeEEEEecCCCCceee
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD----------Y-MNLKLWDIRMDSTPVA  359 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~----------~-~~i~lwd~~~~~~~~~  359 (497)
                      |-++-+..       ..|....      .+..-.+.++.|..| +.++++|+          . |.|.+|.... .+.++
T Consensus       756 D~nTf~vl-------~~hef~~------~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~  821 (1096)
T KOG1897|consen  756 DQNTFEVL-------SSHEFER------NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLE  821 (1096)
T ss_pred             cCCceeEE-------eeccccc------cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCcee
Confidence            65554322       1111110      011235666778877 67877764          1 7888888865 44444


Q ss_pred             eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc
Q 010933          360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  439 (497)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  439 (497)
                      ....+.-.-          .+   .++.. -+|++||.-+  ..|++|+..+.+.+ ..-..+..++..+.....  +-.
T Consensus       822 ~v~e~~v~G----------av---~aL~~-fngkllA~In--~~vrLye~t~~~eL-r~e~~~~~~~~aL~l~v~--gde  882 (1096)
T KOG1897|consen  822 LVAETVVKG----------AV---YALVE-FNGKLLAGIN--QSVRLYEWTTEREL-RIECNISNPIIALDLQVK--GDE  882 (1096)
T ss_pred             eeeeeeecc----------ce---eehhh-hCCeEEEecC--cEEEEEEcccccee-hhhhcccCCeEEEEEEec--CcE
Confidence            443322110          00   12211 2677776544  58999999877443 555677777777777763  322


Q ss_pred             ccccceeEeeccCc-eec--CCCC--Cccccc-ccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933          440 SSLSNLTRGLYRQA-HEN--SSSG--HHELSY-NLSSKLLHLAWHPTTNLIACANGNSLFF  494 (497)
Q Consensus       440 ~~~~~l~~~~~d~~-~iw--~~~~--~~~~~~-~~~~~i~~l~~~p~~~~la~~~~~~~~i  494 (497)
                           ++.|.--+. .+-  ...+  ...... -+..+++++.+-.+..++.+-..+++++
T Consensus       883 -----I~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~  938 (1096)
T KOG1897|consen  883 -----IAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFT  938 (1096)
T ss_pred             -----EEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEE
Confidence                 555554444 221  1111  111111 2445777777776666665555666654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.26  E-value=0.035  Score=41.17  Aligned_cols=65  Identities=18%  Similarity=0.185  Sum_probs=41.4

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe---CCCCcEEEEEeCCCeEE
Q 010933          214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR  289 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~dg~i~  289 (497)
                      ...|.++.-... ..++.+ .+|+|-+|+..  .+...+   |      .+..+.++.+.   .+|...|++|-.+|.|-
T Consensus        42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            456777776665 568888 99999999764  333332   1      22335555543   34445799999898874


Q ss_pred             E
Q 010933          290 L  290 (497)
Q Consensus       290 v  290 (497)
                      +
T Consensus       110 ~  110 (111)
T PF14783_consen  110 V  110 (111)
T ss_pred             e
Confidence            3

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0021  Score=61.49  Aligned_cols=76  Identities=21%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE-EEEEeCCCCcEEEEEeCCCeEEEE
Q 010933          214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV  291 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~v~  291 (497)
                      ...+.-+.|+|.-.++|.+ .+|.|.+.... -.+...        ++-+...++ +++|.||| ++||+|-.||+|++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence            4467789999999999999 99999998877 444433        344555555 99999999 999999999999999


Q ss_pred             EccCCccc
Q 010933          292 DMRQSALC  299 (497)
Q Consensus       292 d~~~~~~~  299 (497)
                      |+.++..+
T Consensus        90 Dve~~~~l   97 (665)
T KOG4640|consen   90 DVEKGGRL   97 (665)
T ss_pred             EccCCCce
Confidence            99998765

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.0012  Score=62.93  Aligned_cols=93  Identities=15%  Similarity=0.074  Sum_probs=73.1

Q ss_pred             ccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      ..+..+.|+|.-.++|.+.. |.|.++.+.  .+.+.++..+...+.              ++++|.|||+.||.|-.||
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG   84 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG   84 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence            35788999999999999865 989998886  666777775655431              3899999999999999999


Q ss_pred             cEEEEEcCCCCcceEEEeccCcceeeeEee
Q 010933          403 LLRIFSHGVGSAGGITVEAGKNENRKPILQ  432 (497)
Q Consensus       403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  432 (497)
                      +|++-|++++..+......-...|.++.|.
T Consensus        85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eEEEEEccCCCceeccccccccchheeecc
Confidence            999999999876644444445566666665

>smart00320 WD40 WD40 repeats

Probab=97.25  E-value=0.00052  Score=40.13  Aligned_cols=31  Identities=26%  Similarity=0.557  Sum_probs=28.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd   60 (497)
                      .|...|.++.|++++.++++|+.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3778999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.23  E-value=0.22  Score=47.90  Aligned_cols=165  Identities=14%  Similarity=0.015  Sum_probs=81.5

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCC--CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      +.+.++.|+.+.++++...||.+++||+. +..  +. .+..  ....-.+..+....+..+|   ++.-..++.+.+..
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~--~f-sl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~  153 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF--QF-SLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVN  153 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce--ee-chhhhccccCcccccccccccCCCC---EEEECCCCeEEEEe
Confidence            78999999998777766699999999987 333  11 1110  0011122333333444466   34444555554443


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKL  371 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~  371 (497)
                      --......   +.+..   .+........+........++.+....+.. .++.+.+.+-.. .+.   +.....     
T Consensus       154 n~~~~~~~---~~~~~---~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~~~~~-----  218 (410)
T PF04841_consen  154 NIDEPVKL---RRLPE---IPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS-FKQ---IDSDGP-----  218 (410)
T ss_pred             Cccccchh---hcccc---CCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-ccc---ccCCCC-----
Confidence            22211110   11000   000000000111111112344444443333 335555444321 111   211111     


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                                 +..+++||++++||.-..+|.+.+.+.+-.
T Consensus       219 -----------i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  219 -----------IIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             -----------eEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence                       268999999999999999999999886544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.11  E-value=0.17  Score=44.54  Aligned_cols=185  Identities=10%  Similarity=0.131  Sum_probs=110.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.++.|  +|+.+.|++......-.+|=...|+++.......                                    
T Consensus        86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g------------------------------------  127 (316)
T COG3204          86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG------------------------------------  127 (316)
T ss_pred             ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEecccc------------------------------------
Confidence            55999999  6888899998888888888777777655432211                                    


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEee--cCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i  266 (497)
                                              -...-.+.+..+|++.++- .++.++++.+...........  ++...........
T Consensus       128 ------------------------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf  183 (316)
T COG3204         128 ------------------------FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF  183 (316)
T ss_pred             ------------------------cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence                                    1122346777777777777 899999988774433322211  1111222225667


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEEec-C
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-M  344 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~-~  344 (497)
                      -.++|+|.. +.|..+-+-.-+.||.+..+..      .+..|.. ........---..+.++.|++... +|+-+.+ +
T Consensus       184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~-~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr  255 (316)
T COG3204         184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHAS-LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR  255 (316)
T ss_pred             eeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccc-cCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence            899999998 8888888887788887764321      1111100 000000000013577888887544 4444443 7


Q ss_pred             eEEEEecCCCCceeeeeeeccc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      .+.-.|..  +.++..+.-+.+
T Consensus       256 ~l~Evd~~--G~~~~~lsL~~g  275 (316)
T COG3204         256 RLLEVDLS--GEVIELLSLTKG  275 (316)
T ss_pred             eEEEEecC--CCeeeeEEeccC
Confidence            77777765  666666654443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.09  E-value=0.16  Score=47.26  Aligned_cols=105  Identities=11%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             cEEEEEeC---------C-CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933          277 NLLAYSSS---------R-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  346 (497)
Q Consensus       277 ~~l~~~~~---------d-g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i  346 (497)
                      .+|++|+.         . |.|.++++..........+....           ....++|++++--  +.+|+++..+.|
T Consensus        43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-----------~~~~g~V~ai~~~--~~~lv~~~g~~l  109 (321)
T PF03178_consen   43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-----------TEVKGPVTAICSF--NGRLVVAVGNKL  109 (321)
T ss_dssp             EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-----------EEESS-EEEEEEE--TTEEEEEETTEE
T ss_pred             CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-----------EeecCcceEhhhh--CCEEEEeecCEE
Confidence            67877754         2 89999999884110000111111           1124678888765  445777777999


Q ss_pred             EEEecCCCCc-eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          347 KLWDIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       347 ~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      .+|++.. .+ ....-..+....              ++++..  .+.+|+.|..-..+.++..+.
T Consensus       110 ~v~~l~~-~~~l~~~~~~~~~~~--------------i~sl~~--~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen  110 YVYDLDN-SKTLLKKAFYDSPFY--------------ITSLSV--FKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEET-TSSEEEEEEE-BSSS--------------EEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEccC-cccchhhheecceEE--------------EEEEec--cccEEEEEEcccCEEEEEEEc
Confidence            9999986 44 333322222210              134444  466999999988888886654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.03  E-value=0.0014  Score=38.18  Aligned_cols=28  Identities=32%  Similarity=0.735  Sum_probs=25.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEee
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWK  139 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~  139 (497)
                      ..|.++.|  .+++..+++++.|+.+++|+
T Consensus        13 ~~i~~~~~--~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       13 GPVTSVAF--SPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence            88999999  56678999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.00  E-value=0.17  Score=47.07  Aligned_cols=137  Identities=11%  Similarity=0.013  Sum_probs=82.6

Q ss_pred             CeEEEEeCccC---ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc-ccccccceecccc
Q 010933          235 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA  310 (497)
Q Consensus       235 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~~  310 (497)
                      |.|.++++...   ...++.+     .-....++|++++-- .+ . |++ +..+.|.+|++...+ ..    +.-..  
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~-~~g~~l~v~~l~~~~~l~----~~~~~--  126 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVV-AVGNKLYVYDLDNSKTLL----KKAFY--  126 (321)
T ss_dssp             EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEE-EETTEEEEEEEETTSSEE----EEEEE--
T ss_pred             cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEE-eecCEEEEEEccCcccch----hhhee--
Confidence            88999999842   1122221     122356889998877 33 4 443 345799999998876 22    11111  


Q ss_pred             cccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc
Q 010933          311 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  389 (497)
Q Consensus       311 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  389 (497)
                                  ...+...+....+.+++.|+- ..+.++..+.....+..+.......             .++++.|-
T Consensus       127 ------------~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l  181 (321)
T PF03178_consen  127 ------------DSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL  181 (321)
T ss_dssp             -------------BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred             ------------cceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence                        123445555555779999975 8888886654344344444332222             12578888


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCC
Q 010933          390 GDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       390 ~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      ++++.++.+..+|.+.++....
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-S
T ss_pred             cCCcEEEEEcCCCeEEEEEECC
Confidence            6767999999999999999873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.93  E-value=0.053  Score=40.24  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=62.9

Q ss_pred             eEEEEE---eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933          266 ITSAEF---HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  341 (497)
Q Consensus       266 i~~~~~---~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-  341 (497)
                      |+++++   ..+|.+.|++|+.|..||+|+-..-  +    ..+..              ...++++.-...++ ++.+ 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~----~Ei~e--------------~~~v~~L~~~~~~~-F~Y~l   60 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--V----AEITE--------------TDKVTSLCSLGGGR-FAYAL   60 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--E----EEEec--------------ccceEEEEEcCCCE-EEEEe
Confidence            344544   4456578999999999999986531  1    22222              25678887776654 5555 


Q ss_pred             ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC---CC-CEEEEEeCCCcEE
Q 010933          342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DG-LHFATGSYSNLLR  405 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~-~~l~s~~~dg~i~  405 (497)
                      ..|+|-+|+-   ...+.+.+.....                +++++..   || .-|++|-.+|.|-
T Consensus        61 ~NGTVGvY~~---~~RlWRiKSK~~~----------------~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   61 ANGTVGVYDR---SQRLWRIKSKNQV----------------TSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cCCEEEEEeC---cceeeeeccCCCe----------------EEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5699999975   3445555544432                2444332   33 3688888888874

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.93  E-value=0.0042  Score=38.24  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=29.0

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecC
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVG   63 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~   63 (497)
                      ...|.+++|+|..++||.|+.+|.|.|+.+..
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            45799999999999999999999999999843

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.093  Score=45.69  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=68.3

Q ss_pred             eEEEEEeCCCCcEEEEEeCCCe-EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  342 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--  342 (497)
                      -+.++++|..+.-++.+-.-|+ ..++|....+...    ++..     ....-|-+      .-.|||||++|.+..  
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv----~~~s-----~~~RHfyG------HGvfs~dG~~LYATEnd  134 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV----TLVS-----QEGRHFYG------HGVFSPDGRLLYATEND  134 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE----EEec-----ccCceeec------ccccCCCCcEEEeecCC
Confidence            3567788876566677766554 5688888776542    1111     00011112      235999999998852  


Q ss_pred             -c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          343 -Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       343 -~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                       |   |.|-|||.+..-..+.++..|.-.-               ..+.|.+||+.|+.+.
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvan  180 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeC
Confidence             2   8999999986556677777665432               4799999999988765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.026  Score=53.26  Aligned_cols=100  Identities=15%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             EE-cCCeEEEEeCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc
Q 010933          231 SA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  308 (497)
Q Consensus       231 ~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  308 (497)
                      .| .|..|+-||.+..+.. +.....+   -........|.+-..+|  ++++||.+|.||+||- .+....   ..   
T Consensus       399 vGLs~n~vfriDpRv~~~~kl~~~q~k---qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TA---  466 (644)
T KOG2395|consen  399 VGLSDNSVFRIDPRVQGKNKLAVVQSK---QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TA---  466 (644)
T ss_pred             EeecCCceEEecccccCcceeeeeecc---ccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hc---
Confidence            47 8999999999855542 2221000   01112345566666665  8999999999999996 443221   22   


Q ss_pred             cccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933          309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  352 (497)
Q Consensus       309 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~  352 (497)
                                +++...+|..+..+.+|++|++..+..+.+.++.
T Consensus       467 ----------lPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  467 ----------LPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ----------ccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence                      2334478999999999999998887888877764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.023  Score=53.54  Aligned_cols=140  Identities=12%  Similarity=0.143  Sum_probs=85.8

Q ss_pred             EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE--------EEEEecCeEEEE
Q 010933          278 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--------LLSRDYMNLKLW  349 (497)
Q Consensus       278 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--------l~~~~~~~i~lw  349 (497)
                      +|..+.....++-.|++.|+.+    ..|..+              ..|+-+.+.|+.+.        |+.-+++.|.-|
T Consensus       348 il~~~~~~~~l~klDIE~GKIV----eEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri  409 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIV----EEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI  409 (644)
T ss_pred             EeeCCCCcCcceeeecccceee----eEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence            3444555677888999999876    555552              23666777776432        333367899999


Q ss_pred             ecCCCCc-eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee
Q 010933          350 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  428 (497)
Q Consensus       350 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  428 (497)
                      |.+-.++ .+..-++|+...         ..-|  .|++-..+ -+|++||.+|.|++||. .+....            
T Consensus       410 DpRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AK------------  464 (644)
T KOG2395|consen  410 DPRVQGKNKLAVVQSKQYST---------KNNF--SCFATTES-GYIVVGSLKGDIRLYDR-IGRRAK------------  464 (644)
T ss_pred             cccccCcceeeeeecccccc---------cccc--ceeeecCC-ceEEEeecCCcEEeehh-hhhhhh------------
Confidence            9986454 333333333211         0111  24444444 48999999999999996 442221            


Q ss_pred             eEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933          429 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  494 (497)
Q Consensus       429 ~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i  494 (497)
                                                        ..++++..+|.++..+.+|++|++.+..-|.+
T Consensus       465 ----------------------------------TAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL  496 (644)
T KOG2395|consen  465 ----------------------------------TALPGLGDAIKHVDVTADGKWILATCKTYLLL  496 (644)
T ss_pred             ----------------------------------hcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence                                              12334555788888888888877776665544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.82  E-value=0.31  Score=42.90  Aligned_cols=176  Identities=7%  Similarity=0.031  Sum_probs=100.3

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933          212 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  290 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  290 (497)
                      +-...+.++.|+|+.+.|++- ....-.++ +.+.++.+.++.     +.+.. ..-.+.+..++ .+.++--.++.+.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiP-----L~g~~-DpE~Ieyig~n-~fvi~dER~~~l~~  154 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIP-----LTGFS-DPETIEYIGGN-QFVIVDERDRALYL  154 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEec-----ccccC-ChhHeEEecCC-EEEEEehhcceEEE
Confidence            445569999999999998887 44444343 444677777753     33332 33667788776 66666666888988


Q ss_pred             EEccCCcccccccc-eecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceee--eeeeccc
Q 010933          291 VDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA--TFKIHEH  366 (497)
Q Consensus       291 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~--~~~~~~~  366 (497)
                      +.+........... .+.. ..       ...-....-.++|+|..+.|..+-+ .-+.||........+.  ....+..
T Consensus       155 ~~vd~~t~~~~~~~~~i~L-~~-------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~  226 (316)
T COG3204         155 FTVDADTTVISAKVQKIPL-GT-------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA  226 (316)
T ss_pred             EEEcCCccEEeccceEEec-cc-------cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence            87765532211101 1111 00       0011346778999999888888765 7777777653211111  1111111


Q ss_pred             ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~  411 (497)
                      ..        .--+.++.++.|.+. +.+|+-+.+++.+.-.|...
T Consensus       227 ~~--------~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         227 DR--------DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cc--------ceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            10        001223457888875 45555666677777777653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.74  E-value=0.61  Score=45.19  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=25.2

Q ss_pred             cceEEEEEcCCCCEEEEe-ecCC----eEEEEEecCCc
Q 010933           33 DIVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGK   65 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg-~~dg----~i~iwd~~~~~   65 (497)
                      -.+....+||||++||.+ +..|    .|+++|+.+++
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~  161 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK  161 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc
Confidence            355578999999999876 3333    59999998874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.56  Score=42.86  Aligned_cols=127  Identities=11%  Similarity=0.063  Sum_probs=75.7

Q ss_pred             CeeEEEeCCCCCEEEEE-c-----------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933          216 NINSISNNSDCETFVSA-D-----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  283 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  283 (497)
                      ..+.+...|+|.+.++. .           -|.++.++.  .+...+.       +..+-..-..++|+|++ +.|+.+.
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aD  181 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVAD  181 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEe-------ecCcEEecCceEECCCC-CEEEEEe
Confidence            44566667777666554 3           133444443  2333332       23334455789999999 6666665


Q ss_pred             C-CCeEEEEEccC--CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCcee
Q 010933          284 S-RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV  358 (497)
Q Consensus       284 ~-dg~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~  358 (497)
                      . .+.|.-|++..  +.....  +.          ...+....+..-.++...+|.+.+++. . +.|..|+..  ++++
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~--~~----------~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~  247 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGR--RG----------FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLL  247 (307)
T ss_pred             CCCCeEEEEecCcccCccCCc--ce----------EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEE
Confidence            5 58888888763  211111  00          001112235667788888998886553 3 499999986  8888


Q ss_pred             eeeeeccc
Q 010933          359 ATFKIHEH  366 (497)
Q Consensus       359 ~~~~~~~~  366 (497)
                      ..+.....
T Consensus       248 ~~i~lP~~  255 (307)
T COG3386         248 GEIKLPVK  255 (307)
T ss_pred             EEEECCCC
Confidence            88887743

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.60  E-value=1.1  Score=46.22  Aligned_cols=319  Identities=11%  Similarity=0.066  Sum_probs=151.0

Q ss_pred             cceeEEEEEecCCCC----EEEEEeCCccEEEe-ecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          110 EKINRVRWCAAPNGS----MFILSTNDKTIKLW-KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~----~l~s~s~d~~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      ..|.|+.++|-++++    .++.|..+..+.+- -..+............         .-.-.++.+....+..++.++
T Consensus       531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~---------~iPRSIl~~~~e~d~~yLlva  601 (1096)
T KOG1897|consen  531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE---------IIPRSILLTTFEGDIHYLLVA  601 (1096)
T ss_pred             ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC---------ccchheeeEEeeccceEEEEE
Confidence            779999997654443    45666555544443 2222222211111110         001122333333333444443


Q ss_pred             ccccCcceEEEeecCC--ccceeeeeeccCCCCCeeEEEeCCCCC-EEEEEcCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          185 EWTENMATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                      .-  +|.+..+.++..  ......+..  --..++.--.|+..++ .++++.|+-..+|.-+ .+-.+..+.++.   ..
T Consensus       602 lg--dG~l~~fv~d~~tg~lsd~Kk~~--lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~ke---v~  673 (1096)
T KOG1897|consen  602 LG--DGALLYFVLDINTGQLSDRKKVT--LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKE---VN  673 (1096)
T ss_pred             cC--CceEEEEEEEcccceEccccccc--cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHH---hh
Confidence            32  555555544432  222222222  1233455455654444 4444488877777766 444444332221   11


Q ss_pred             CCCCeEEEEEeCC-CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          262 LTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       262 ~~~~i~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      |     .+.|+.+ .+..++++. .+.+++.-+..-+...  .+....              ......+++.+....+++
T Consensus       674 ~-----~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~--irtvpl--------------~~~prrI~~q~~sl~~~v  731 (1096)
T KOG1897|consen  674 H-----MCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLH--IRTVPL--------------GESPRRICYQESSLTFGV  731 (1096)
T ss_pred             h-----hcccccccCCceEEEec-CCceEEEEecchhhcc--eeeecC--------------CCChhheEecccceEEEE
Confidence            1     1123222 223355443 3456666554322111  011222              134566666664444333


Q ss_pred             Ee------------c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEe-----
Q 010933          341 RD------------Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGS-----  399 (497)
Q Consensus       341 ~~------------~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~-----  399 (497)
                      .+            .   ..++++|-++    ...+..|+-..        .+.+..+.++.|..| +.++++|.     
T Consensus       732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nT----f~vl~~hef~~--------~E~~~Si~s~~~~~d~~t~~vVGT~~v~P  799 (1096)
T KOG1897|consen  732 LSNRIESSAEYYGEEYEVSFLRVLDQNT----FEVLSSHEFER--------NETALSIISCKFTDDPNTYYVVGTGLVYP  799 (1096)
T ss_pred             EecccccchhhcCCcceEEEEEEecCCc----eeEEeeccccc--------cceeeeeeeeeecCCCceEEEEEEEeecc
Confidence            21            1   2455666443    44444444321        223333356778887 67777776     


Q ss_pred             -----CCCcEEEEEcCCCCcceEEEe--ccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCC
Q 010933          400 -----YSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSK  471 (497)
Q Consensus       400 -----~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~  471 (497)
                           ..|+|.||.+.....+ ....  .-++.+..+..-   +++.     +|.-+..-. .-|..++....-..+..+
T Consensus       800 de~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~f---ngkl-----lA~In~~vrLye~t~~~eLr~e~~~~~~  870 (1096)
T KOG1897|consen  800 DENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEF---NGKL-----LAGINQSVRLYEWTTERELRIECNISNP  870 (1096)
T ss_pred             CCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhh---CCeE-----EEecCcEEEEEEccccceehhhhcccCC
Confidence                 3688999998873232 1111  112333333321   4444     443333323 566555555556677788


Q ss_pred             eEEEEEecCCCEEEEEe
Q 010933          472 LLHLAWHPTTNLIACAN  488 (497)
Q Consensus       472 i~~l~~~p~~~~la~~~  488 (497)
                      +..+...-.|+.+|+|.
T Consensus       871 ~~aL~l~v~gdeI~VgD  887 (1096)
T KOG1897|consen  871 IIALDLQVKGDEIAVGD  887 (1096)
T ss_pred             eEEEEEEecCcEEEEee
Confidence            88999999999999987

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.55  E-value=0.17  Score=50.87  Aligned_cols=166  Identities=12%  Similarity=0.088  Sum_probs=84.9

Q ss_pred             CCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-
Q 010933          214 DFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-  285 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-  285 (497)
                      ...+.+.+++|+|+.++.. .      |..-.||-...++.....       ..+  .....-.|+|+| ..|++.... 
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~g--~~~t~PsWspDG-~~lw~v~dg~  418 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LEG--HSLTRPSWSLDA-DAVWVVVDGN  418 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ecC--CCCCCceECCCC-CceEEEecCc
Confidence            3467889999999998764 2      433344433322322222       122  236778999998 777766543 


Q ss_pred             CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEE---EecCCCCceeeeee
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL---WDIRMDSTPVATFK  362 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~l---wd~~~~~~~~~~~~  362 (497)
                      ..+++.+-.....+    ........  ....   .....|..+.|||||..++.-.++.|++   -... ++.  ..+.
T Consensus       419 ~~~~v~~~~~~gql----~~~~vd~g--e~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~-~G~--~~l~  486 (591)
T PRK13616        419 TVVRVIRDPATGQL----ARTPVDAS--AVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTE-DGQ--YALT  486 (591)
T ss_pred             ceEEEeccCCCceE----EEEeccCc--hhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCC-CCc--eeec
Confidence            22333222111000    00010000  0000   1135699999999999998876677776   3322 232  2221


Q ss_pred             ecccccccccccCCCCCccc-eeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          363 IHEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      .......         ..-+ +.++.|..++.++ .+..++.-.+|.+.-
T Consensus       487 ~~~~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        487 NPREVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             ccEEeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEec
Confidence            0000000         0000 1479999999854 555555555666544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.51  E-value=0.16  Score=43.67  Aligned_cols=111  Identities=18%  Similarity=0.125  Sum_probs=79.0

Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~l  348 (497)
                      ...++.+.+++.|+..+.+.--|..+|++..+  ..+.                ..+-+-+.- -|.+++.|-. |.+++
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We--~ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYf   77 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE--AILG----------------VRIECSAIV-VGDFVVLGCYSGGLYF   77 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEee--hhhC----------------ceeeeeeEE-ECCEEEEEEccCcEEE
Confidence            34455547888899999999999999975532  1111                122222222 4667888865 99999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      .+..+ +.....+...+...               .+....+++..+..|+.|++.+..|..+...+
T Consensus        78 l~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   78 LCVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             EEecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEecccccceE
Confidence            99987 77777776554421               35677789999999999999999999887555

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.018  Score=58.92  Aligned_cols=102  Identities=16%  Similarity=0.239  Sum_probs=73.8

Q ss_pred             cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCC
Q 010933          277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS  355 (497)
Q Consensus       277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~  355 (497)
                      ..++.|+..|.+-..|.+.. +..   -....            .-.++|++++|+.+|+.++.| .+|.|.+||+.. +
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN-LGP---LHQNE------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc-cch---hhcCC------------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence            57899999999999988753 110   01111            013789999999999999999 669999999986 8


Q ss_pred             ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          356 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      ++++.+..+..+..            ++.-+.+..++..++++...|.  +|++
T Consensus       163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            88888877766431            1235666667777888888887  5654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.31  E-value=0.075  Score=52.82  Aligned_cols=89  Identities=18%  Similarity=0.388  Sum_probs=59.0

Q ss_pred             ccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY   89 (497)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (497)
                      ....|.....+..        .....+-+.-|.-++..++-+....+.|||...+..                     ++
T Consensus        15 ~~~~w~~t~~~~T--------~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l---------------------E~   65 (631)
T PF12234_consen   15 NKIEWLLTSTFET--------GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL---------------------EY   65 (631)
T ss_pred             CeEEEEEEEEEec--------CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE---------------------EE
Confidence            3445666555442        123444555555555555544556899999987643                     22


Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeec
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV  140 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~  140 (497)
                      ...| ...            +.|.++.|...|+++.+++.|..+.|.+|.-
T Consensus        66 ~~~f-~~~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   66 EESF-SED------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             eeee-cCC------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            2333 122            7799999998899999999999999999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.88  Score=43.39  Aligned_cols=173  Identities=10%  Similarity=0.111  Sum_probs=108.9

Q ss_pred             CeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEEE
Q 010933          216 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRL  290 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v  290 (497)
                      .-..+++++.++.+.. . .++.|.+.|.. .......+      ..+.  ....++++|++ +.+.++..   ++.+.+
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~------~vG~--~P~~~~~~~~~-~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSI------PVGL--GPVGLAVDPDG-KYVYVANAGNGNNTVSV  144 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEe------eecc--CCceEEECCCC-CEEEEEecccCCceEEE
Confidence            3456788888875544 4 78999999977 34444432      1122  56789999999 66666655   688999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceee-----eeee
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA-----TFKI  363 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~-----~~~~  363 (497)
                      .|..+.+...   ....+              ..+ ..++++|+|+.+....  ++.|.+.|... ....+     ....
T Consensus       145 id~~t~~~~~---~~~vG--------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~  205 (381)
T COG3391         145 IDAATNKVTA---TIPVG--------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGV  205 (381)
T ss_pred             EeCCCCeEEE---EEecC--------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceecccccccccc
Confidence            9988876542   11111              123 8899999999877764  49999999764 33332     1222


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      ...+                ..+.++|+|+++......   +.+...|..++......+.........+.+.|
T Consensus       206 ~~~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p  262 (381)
T COG3391         206 GTGP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP  262 (381)
T ss_pred             CCCC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence            2222                379999999977655543   58989998876443221222211233455665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=1.3  Score=42.14  Aligned_cols=159  Identities=11%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             CeeEEEeCCCCCEEEEE-c---CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933          216 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL  290 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v  290 (497)
                      ....++++++++.+..+ .   ++.+.+.|.. .......+      ..+. .+ ..++++|+| ..++.. ..++.|.+
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-t~~~~~~~------~vG~-~P-~~~a~~p~g-~~vyv~~~~~~~v~v  186 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-TNKVTATI------PVGN-TP-TGVAVDPDG-NKVYVTNSDDNTVSV  186 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCC-CCeEEEEE------ecCC-Cc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence            45678999999888776 3   6888888887 44444432      1111 23 889999999 655444 57899999


Q ss_pred             EEccCCcccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----CeEEEEecCCCCceeee-eeec
Q 010933          291 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH  364 (497)
Q Consensus       291 ~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~lwd~~~~~~~~~~-~~~~  364 (497)
                      .|........ ........              ...-..+.++|+|.++....+    +.+...|..+ +..... +...
T Consensus       187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~  251 (381)
T COG3391         187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG  251 (381)
T ss_pred             EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence            9977654321 00000111              134577899999998777643    4788888875 444433 2222


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc
Q 010933          365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA  414 (497)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~  414 (497)
                      .. .+              ..+.++|+|+.+.+... .+.+.+-|..+...
T Consensus       252 ~~-~~--------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         252 SG-AP--------------RGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             cC-CC--------------CceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            21 10              36999999999888754 58899999877633

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.09  E-value=0.32  Score=43.31  Aligned_cols=139  Identities=12%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             cccEEEEeeCCCEEEEEe--c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          325 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       325 ~i~~~~~s~~g~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      .+.+.+++++++.+++-.  +  ..++++...  +.......+..-                 +.-.|++++...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l-----------------~~PS~d~~g~~W~v~~~   85 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSL-----------------TRPSWDPDGWVWTVDDG   85 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCcc-----------------ccccccCCCCEEEEEcC
Confidence            588999999999887754  4  555555543  333333333321                 57899999888887777


Q ss_pred             CCcEEEEE-cCCCCcceEEEeccC--cceeeeEeecCCCcccccccceeEeecc--Cceec------CCCC---Cc----
Q 010933          401 SNLLRIFS-HGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYR--QAHEN------SSSG---HH----  462 (497)
Q Consensus       401 dg~i~vw~-~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~~~~~d--~~~iw------~~~~---~~----  462 (497)
                      +...+++. ..++......+....  .+|..+.+++  ++..     +|.-..+  +.++|      ....   ..    
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp--DG~R-----vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~  158 (253)
T PF10647_consen   86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP--DGTR-----VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR  158 (253)
T ss_pred             CCceEEEEecCCCcceeEEecccccCCceEEEEECC--CCcE-----EEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence            77777774 334433333333332  2899999999  6655     4444432  22666      1122   11    


Q ss_pred             ccccccCCCeEEEEEecCCCEEEEEeC
Q 010933          463 ELSYNLSSKLLHLAWHPTTNLIACANG  489 (497)
Q Consensus       463 ~~~~~~~~~i~~l~~~p~~~~la~~~~  489 (497)
                      .........+++++|.+++.+++.+..
T Consensus       159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  159 RVAPPLLSDVTDVAWSDDSTLVVLGRS  185 (253)
T ss_pred             EecccccCcceeeeecCCCEEEEEeCC
Confidence            111133568899999999998877763

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.07  E-value=1.9  Score=43.54  Aligned_cols=127  Identities=11%  Similarity=0.098  Sum_probs=66.2

Q ss_pred             eeEEEeCCCCCEEEEE-cC-CeEEEEeCccCceeeEEeecCCCccC-CCCCCeEEEEEeCCCCcEEEEEeCCCeEEE---
Q 010933          217 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL---  290 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v---  290 (497)
                      ...-.|+|+|+.+.+. +. ..+++.+....++. ..+.+...... .....|..+.|+||| ..++... ++.|.+   
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql-~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL-ARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceE-EEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence            6677899998877776 32 33444443322222 21222111111 335679999999999 7776655 467766   


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCcee
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV  358 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~  358 (497)
                      -....|.........+.            ......+..+.|.+++.+++...++.-.+|.+.-++...
T Consensus       476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~  531 (591)
T PRK13616        476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS  531 (591)
T ss_pred             EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCccc
Confidence            33333321100000011            011233578999999986644444444456555444433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.04  E-value=1.2  Score=40.80  Aligned_cols=150  Identities=14%  Similarity=0.031  Sum_probs=79.9

Q ss_pred             EEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE-EeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933          220 ISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-FHPIYCNLLAYSSSRGFVRLVDMRQS  296 (497)
Q Consensus       220 ~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~  296 (497)
                      -.|.++...|+- - ..+.|.-|+........         +. +...+.++. .+..+  .|+++..  -+.+++..++
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~---------~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~   95 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV---------FP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTG   95 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE---------EE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCC
Confidence            356777775554 4 88999999987332222         11 122223333 44443  4544433  2556666554


Q ss_pred             cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e---------cCeEEEEecCCCCceeeeeeeccc
Q 010933          297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---------YMNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---------~~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      ............      .      -....+.+...|+|.+.++. .         ...-.||-+...+...+.+..+-.
T Consensus        96 ~~~t~~~~~~~~------~------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~  163 (307)
T COG3386          96 GKITLLAEPEDG------L------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT  163 (307)
T ss_pred             ceeEEeccccCC------C------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence            432100011111      0      01456788889999887763 2         111144444422444444443221


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  410 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~  410 (497)
                      .               -+.++||||++.|+.+.. .+.|+-|++.
T Consensus       164 ~---------------~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         164 I---------------PNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             e---------------cCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            1               158999999988776665 5888888876

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.037  Score=56.78  Aligned_cols=84  Identities=10%  Similarity=-0.004  Sum_probs=60.8

Q ss_pred             CCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          334 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       334 ~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      .+..++.|++ |.+-..|...  . +..+  |.+..          ...++++++|+.+|+.++.|-.+|.|.+||+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~--n-L~~~--~~ne~----------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTG--N-LGPL--HQNER----------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhc--c-cchh--hcCCc----------cCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            4557888876 9999888863  2 1111  11110          1122479999999999999999999999999987


Q ss_pred             CcceEEEeccCcceeeeEeec
Q 010933          413 SAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       413 ~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      . +.+.+..|..|...+.+..
T Consensus       163 k-~l~~i~e~~ap~t~vi~v~  182 (1206)
T KOG2079|consen  163 K-ILKVITEHGAPVTGVIFVG  182 (1206)
T ss_pred             c-ceeeeeecCCccceEEEEE
Confidence            4 4488888888888887764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.87  E-value=1  Score=38.86  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=45.0

Q ss_pred             CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCC
Q 010933           44 GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG  123 (497)
Q Consensus        44 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~  123 (497)
                      .++++.|+..+.+.--|.++|+.                     ...+.+.               .+|.+-+..   -|
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~---------------------~We~ilg---------------~RiE~sa~v---vg   63 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNL---------------------IWEAILG---------------VRIECSAIV---VG   63 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcE---------------------EeehhhC---------------ceeeeeeEE---EC
Confidence            56888899999999999888864                     2222222               334444432   25


Q ss_pred             CEEEEEeCCccEEEeecCchhee
Q 010933          124 SMFILSTNDKTIKLWKVRDQKVK  146 (497)
Q Consensus       124 ~~l~s~s~d~~i~iw~~~~~~~~  146 (497)
                      .+++.|...|.+.+-++.+|...
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~~   86 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQI   86 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhhe
Confidence            68999999999999999998643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.85  E-value=1.3  Score=39.97  Aligned_cols=252  Identities=11%  Similarity=0.084  Sum_probs=125.7

Q ss_pred             CCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecC
Q 010933           42 KTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP  121 (497)
Q Consensus        42 p~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~  121 (497)
                      ..++.|+.|+.+| |.+++......                      .....  +.            ..|..+...  +
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~----------------------~~~i~--~~------------~~I~ql~vl--~   45 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSK----------------------PTRIL--KL------------SSITQLSVL--P   45 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcc----------------------ceeEe--ec------------ceEEEEEEe--c
Confidence            3578999999998 89999832211                      01111  11            348888885  4


Q ss_pred             CCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccc-ccccccCccc-c--CCCCCcccccccccccCcceEEEee
Q 010933          122 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN-TLLAEKNFMN-E--HNPPSFAHGYHLEWTENMATKIANV  197 (497)
Q Consensus       122 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~  197 (497)
                      +-..+++-+ |+.+.++++..-...........+...... .......... .  ........+..+.   ...+.+|..
T Consensus        46 ~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~---kk~i~i~~~  121 (275)
T PF00780_consen   46 ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV---KKKILIYEW  121 (275)
T ss_pred             ccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE---CCEEEEEEE
Confidence            434555444 499999998765433211000000000000 0000000111 1  1111112222222   447788877


Q ss_pred             cCCc-cc-eeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCc-----cCCCCCCeEEEE
Q 010933          198 GNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVITSAE  270 (497)
Q Consensus       198 ~~~~-~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~  270 (497)
                      .... .. ...+.+  .-...+.+++|.  ++.++.|......+.|+. .+....+.+.....     ......++..+.
T Consensus       122 ~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  196 (275)
T PF00780_consen  122 NDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ  196 (275)
T ss_pred             ECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhhcccCCCceEEEE
Confidence            7642 22 333433  334678889988  567888855558888988 44444432211101     001122333333


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  350 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd  350 (497)
                      .. ++ .+|++ . |..-.+.|. .|+......-.|+                .....+++.  ..||++-.++.|.||+
T Consensus       197 ~~-~~-e~Ll~-~-~~~g~fv~~-~G~~~r~~~i~W~----------------~~p~~~~~~--~pyli~~~~~~iEV~~  253 (275)
T PF00780_consen  197 LS-DN-EFLLC-Y-DNIGVFVNK-NGEPSRKSTIQWS----------------SAPQSVAYS--SPYLIAFSSNSIEVRS  253 (275)
T ss_pred             eC-Cc-eEEEE-e-cceEEEEcC-CCCcCcccEEEcC----------------CchhEEEEE--CCEEEEECCCEEEEEE
Confidence            33 33 45543 2 333333343 4433321112222                245566664  4588887777899999


Q ss_pred             cCCCCceeeeeeecc
Q 010933          351 IRMDSTPVATFKIHE  365 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~  365 (497)
                      +.+ +++++++....
T Consensus       254 ~~~-~~lvQ~i~~~~  267 (275)
T PF00780_consen  254 LET-GELVQTIPLPN  267 (275)
T ss_pred             CcC-CcEEEEEECCC
Confidence            997 88888887554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.77  E-value=0.75  Score=40.94  Aligned_cols=69  Identities=10%  Similarity=0.026  Sum_probs=42.2

Q ss_pred             CeeEEEeCCCCCEEEEE----cCCeEEEEeCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933          216 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  285 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  285 (497)
                      .|..+.++|||..++.-    .++.|.+--+.....- ...+.............+..++|.+++ .+++.+...
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~  186 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSA  186 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCC
Confidence            89999999999998763    3677777655422211 111000000112335688999999998 666665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.72  E-value=0.041  Score=33.90  Aligned_cols=30  Identities=17%  Similarity=0.577  Sum_probs=26.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  141 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~  141 (497)
                      ..|..++|  +|...++|.++.+|.|.++.+.
T Consensus        12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence            67999999  5677799999999999999984

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.51  E-value=2.4  Score=40.97  Aligned_cols=61  Identities=13%  Similarity=0.067  Sum_probs=39.0

Q ss_pred             CCCeeEEEeCCCCCEEEEEc-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC
Q 010933          214 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  275 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  275 (497)
                      -...+.|+|.|+|++|++-. .|.|++++.. .........++.......+.....|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            45678999999998888874 7999999765 2222222111111011136778999999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.35  E-value=2.5  Score=42.94  Aligned_cols=75  Identities=9%  Similarity=0.102  Sum_probs=51.9

Q ss_pred             CCCeeEEEeC--CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC--Cc---EEEEEeCC
Q 010933          214 DFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSSR  285 (497)
Q Consensus       214 ~~~v~~~~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~d  285 (497)
                      ...+++++++  ...++||++ ....|.+|-..........     ..-..+...|.+|+|-++.  +.   .+++++-.
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~  237 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS  237 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence            4578999998  888889888 7788888765522111111     0012367788999997653  12   77888999


Q ss_pred             CeEEEEEc
Q 010933          286 GFVRLVDM  293 (497)
Q Consensus       286 g~i~v~d~  293 (497)
                      |.+.+|++
T Consensus       238 G~v~~~~I  245 (717)
T PF08728_consen  238 GEVWTFKI  245 (717)
T ss_pred             CcEEEEEE
Confidence            99999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=2.6  Score=39.67  Aligned_cols=78  Identities=18%  Similarity=0.323  Sum_probs=52.8

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      ...++|.++.||+|.+.||+--.+.+|.+++....+.                   ......+.+.-+            
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-------------------~l~~~~~ck~k~------------  112 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-------------------QLEYTQECKTKN------------  112 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-------------------hhHHHHHhccCc------------
Confidence            3567999999999999999999999999999854421                   011122222223            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD  142 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~  142 (497)
                      ..|....|.   ++.-++..+..| +-+|.+..
T Consensus       113 ~~IlGF~W~---~s~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen  113 ANILGFCWT---SSTEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             ceeEEEEEe---cCeeEEEEecCC-eEEEEEch
Confidence            568889994   335666666555 66666544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.24  E-value=0.012  Score=58.89  Aligned_cols=131  Identities=10%  Similarity=0.043  Sum_probs=72.3

Q ss_pred             CCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE-----------EEeCCCCcE
Q 010933          214 DFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA-----------EFHPIYCNL  278 (497)
Q Consensus       214 ~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~  278 (497)
                      ..++.-+.|.|   +.-++..+ .++.|++.++++..+  .+       +.+|...+..+           .++||| ..
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv  249 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TV  249 (1283)
T ss_pred             CCCcceeeecccccccceeeeccCCCceeEeeechHHH--HH-------HHhcCCCcccHHHHhhchhhheeeCCCC-cE
Confidence            33444555544   55667778 889999887774333  21       33455444333           368999 99


Q ss_pred             EEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCC
Q 010933          279 LAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDS  355 (497)
Q Consensus       279 l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~  355 (497)
                      |+.+..||.++.|-+.- |+........|+.|...+...--+..|...+..+.+   -.++++++|  ..+++|.... .
T Consensus       250 ~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~---w~~~Itttd~nre~k~w~~a~-w  325 (1283)
T KOG1916|consen  250 FAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGK---WVLRITTTDVNREEKFWAEAP-W  325 (1283)
T ss_pred             EEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccce---eEEEEecccCCcceeEeeccc-h
Confidence            99999999999887642 333333335555543222111111111111111111   135566665  7899998764 5


Q ss_pred             cee
Q 010933          356 TPV  358 (497)
Q Consensus       356 ~~~  358 (497)
                      +++
T Consensus       326 ~Cl  328 (1283)
T KOG1916|consen  326 QCL  328 (1283)
T ss_pred             hhh
Confidence            555

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.24  E-value=2.6  Score=39.29  Aligned_cols=57  Identities=19%  Similarity=0.182  Sum_probs=37.1

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC
Q 010933          216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  274 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  274 (497)
                      ..++|+|.|+|+++++-..|.|++++.. +.....+..+. ............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence            4578999999988776699999999933 33212222221 223445677899999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.23  E-value=2.3  Score=38.66  Aligned_cols=118  Identities=13%  Similarity=0.102  Sum_probs=61.6

Q ss_pred             CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933          212 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  291 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~  291 (497)
                      .....|.++.|.|++.+.+.+..|.|+.=+..........   .......-.-.+..++|.+++ ...|+|+ .|.+ +.
T Consensus       184 ~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~  257 (302)
T PF14870_consen  184 NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LV  257 (302)
T ss_dssp             -SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EE
T ss_pred             CccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EE
Confidence            3467899999999998888778999988772212222111   000111233447899999987 6666554 4433 33


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEE
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  349 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lw  349 (497)
                      ....|+.       ++.... .      ..-...++.+.|.++.+-++.|.+|.|--|
T Consensus       258 S~DgGkt-------W~~~~~-~------~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  258 STDGGKT-------WQKDRV-G------ENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             ESSTTSS--------EE-GG-G------TTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             eCCCCcc-------ceECcc-c------cCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            4455532       222000 0      011246889999988889999988877654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.22  E-value=0.51  Score=48.49  Aligned_cols=96  Identities=10%  Similarity=0.097  Sum_probs=57.7

Q ss_pred             cccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccc-------cCCCCCccceeEEEEcCC---C
Q 010933          323 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD-------LYNNDSIFDKFECSVSGD---G  392 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~---~  392 (497)
                      .-.|..+.++|+|++++..+...|.|-.+.........+.+...  ...|-       ++.......+..+.|+|.   +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~--~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKK--EINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCc--ceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            35688999999999999876666666665321000011110000  01111       111112223578999996   5


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          393 LHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       393 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      .+|+.-..|+.+++||+........++.
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            8999999999999999987655544443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.17  E-value=0.7  Score=44.85  Aligned_cols=70  Identities=11%  Similarity=-0.040  Sum_probs=43.8

Q ss_pred             EEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          219 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       219 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      .+.|+|....|+.= ....-.++++......++. +     + ...+-|+|.+|.+||.+++++.+..=.-++||-..
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            46788988877764 3333344566544444432 1     2 35678999999999955555555555677887654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.17  E-value=3.8  Score=40.68  Aligned_cols=25  Identities=12%  Similarity=-0.020  Sum_probs=20.9

Q ss_pred             CEEEEEeCCccEEEeecCchheecc
Q 010933          124 SMFILSTNDKTIKLWKVRDQKVKKI  148 (497)
Q Consensus       124 ~~l~s~s~d~~i~iw~~~~~~~~~~  148 (497)
                      ..++.++.++.|.-+|.++|+.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~  135 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWK  135 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeee
Confidence            5788888999999999999886543

The alignment model contains an 8-bladed beta-propeller.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.09  E-value=3.7  Score=40.18  Aligned_cols=66  Identities=17%  Similarity=0.137  Sum_probs=37.9

Q ss_pred             CCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933          213 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  284 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  284 (497)
                      ..+.|.|.+|.+||+.|+.+  ..=.-++||-. .+ .....  ..-....-.+.|.++.-.-+  ..+|++.+
T Consensus       154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~-qK-tL~~C--sfcPVFdv~~~Icsi~AT~d--sqVAvaTE  221 (671)
T PF15390_consen  154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA-QK-TLHRC--SFCPVFDVGGYICSIEATVD--SQVAVATE  221 (671)
T ss_pred             CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc-hh-hhhhC--CcceeecCCCceEEEEEecc--ceEEEEec
Confidence            35679999999999999988  33355778754 22 11110  00012233456666655444  45666655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.85  E-value=1.8  Score=43.38  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=71.3

Q ss_pred             CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--CCCCcEEEEEeCCCeEEEEE
Q 010933          216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~v~d  292 (497)
                      ...-+.-+.-++..+.. ....+.|||.+.+.-....      .+ ...+.|.++.|.  |++ +.+++.+..+.|.+|-
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYT  102 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEE
Confidence            33444445555555555 6779999999833322211      12 457889999986  677 7888888899999886


Q ss_pred             ccCC-----cccccccceecccccccCCcccccccc-ccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933          293 MRQS-----ALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIR  352 (497)
Q Consensus       293 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~lwd~~  352 (497)
                      -...     ......++.+.-           ..|+ .+|....|.++|.++ +|.++.+.|+|-.
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i-----------~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~  156 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDI-----------SSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDKW  156 (631)
T ss_pred             ccchhhhcCCcccceeEEEEe-----------ecCCCCCccceeEecCCeEE-EEeCCEEEEECCC
Confidence            4221     111111111111           1222 578899999998554 4455888888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.77  E-value=0.14  Score=43.13  Aligned_cols=105  Identities=14%  Similarity=-0.003  Sum_probs=64.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe-eCCCEEEEE-ecCeEEEEecCCC
Q 010933          277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR-DYMNLKLWDIRMD  354 (497)
Q Consensus       277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~-~~~~i~lwd~~~~  354 (497)
                      ..+++|+.+|.|.+|.........   .....             -...|-++.-. .++.+..++ .++.||.|++.. 
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-  133 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHS---DRVCS-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-  133 (238)
T ss_pred             ceEEeecccceEEEecCCccchHH---Hhhhc-------------ccccceeccccccccceeEEeccCCceeeecccc-
Confidence            679999999999999987321110   11111             01223332221 233455555 569999999985 


Q ss_pred             CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE--eCCCcEEEEEcCCC
Q 010933          355 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVG  412 (497)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~vw~~~~~  412 (497)
                      .+.+.....|...           ..   ..+..+..+++|+..  |.|..++.|++..-
T Consensus       134 ~k~~g~~g~h~~~-----------~~---e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  134 NKVLGYVGQHNFE-----------SG---EELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             CceeeeeccccCC-----------Cc---ceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            7766666666521           11   245566667778877  88888888888754

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=0.72  Score=48.24  Aligned_cols=154  Identities=10%  Similarity=-0.013  Sum_probs=89.9

Q ss_pred             CeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceee--EEeecCC-CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933          216 NINSISNNSDCETFVSA---DDLRINLWNLEISDQCF--NIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  289 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~--~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  289 (497)
                      ++..+..++|++..++-   .+-.|..||++.-....  +...++- .+......-..++.|+|.-+...+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45556667777666553   44578889987321111  0100000 011112233457789988656778888899999


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccccc
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  368 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~  368 (497)
                      +.-+.......   ..+..              ....++++|+|.|+.++.|.. |.+.-|...  ......+.....  
T Consensus       182 V~~~~~~~~~v---~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~--  240 (1405)
T KOG3630|consen  182 VKSTKQLAQNV---TSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV--  240 (1405)
T ss_pred             hhhhhhhhhhh---cccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc--
Confidence            88775432211   11221              246899999999999999965 999888764  333333332221  


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                            ++   -+.+.+++|-....+|++-+
T Consensus       241 ------~e---~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  241 ------EE---NYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ------CC---CcceeEEEEecceeEEEEec
Confidence                  11   12236889987777776433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.41  E-value=0.16  Score=30.25  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=24.3

Q ss_pred             cccEEEEeeCC---CEEEEEec-CeEEEEecCC
Q 010933          325 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM  353 (497)
Q Consensus       325 ~i~~~~~s~~g---~~l~~~~~-~~i~lwd~~~  353 (497)
                      .+.++.|+|+.   .+|+.+.+ +.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58899999854   58888877 9999999984

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.31  E-value=0.2  Score=29.88  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=26.9

Q ss_pred             CCeEEEEEeCCCC--cEEEEEeCCCeEEEEEccC
Q 010933          264 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       264 ~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~  295 (497)
                      +.++++.|+|...  .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998762  5888888899999999995

It contains a characteristic DLL sequence motif.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.15  E-value=0.14  Score=43.10  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=41.4

Q ss_pred             CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE-EEEeCCCCcEEEEEeCCCeEEEEEccCCcc
Q 010933          225 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  298 (497)
Q Consensus       225 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  298 (497)
                      -+..+++| .+|.|++|+....+.....       ...-...|-+ +.-..++ .+..++..||.||.|++.-.+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence            35577788 9999999988733332221       1111222332 2223334 5888999999999999987643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.13  E-value=1.9  Score=44.45  Aligned_cols=92  Identities=17%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecC
Q 010933          378 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENS  457 (497)
Q Consensus       378 ~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~  457 (497)
                      ...|.|..+.++|+|++||..|..|.. |-.+...-.....+++....+.+..+.-+  .++                  
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~--~~~------------------  140 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVD--ERF------------------  140 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEec--hhh------------------
Confidence            356778899999999999998886554 44443210111334445555555555442  111                  


Q ss_pred             CCCCcccccccCCCeEEEEEecCC---CEEEEEe-CCceEEEe
Q 010933          458 SSGHHELSYNLSSKLLHLAWHPTT---NLIACAN-GNSLFFHY  496 (497)
Q Consensus       458 ~~~~~~~~~~~~~~i~~l~~~p~~---~~la~~~-~~~~~i~~  496 (497)
                            -.......|..+.|||.+   ..|++=+ ++.+.+|+
T Consensus       141 ------~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~  177 (717)
T PF10168_consen  141 ------FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD  177 (717)
T ss_pred             ------ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence                  011234488999999974   5665544 66788887

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.11  E-value=3.9  Score=36.10  Aligned_cols=168  Identities=15%  Similarity=0.125  Sum_probs=93.2

Q ss_pred             eeeeeccCCCCCeeEEEeCCCCCEEEE-E--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE
Q 010933          205 CQKVYPHAHDFNINSISNNSDCETFVS-A--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  281 (497)
Q Consensus       205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  281 (497)
                      .+..+..........+.|..+|.++-+ |  ....|+.+|+. +++.....++++.-      ---.++...+  .+...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~~~------FgEGit~~~d--~l~qL  105 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPPRY------FGEGITILGD--KLYQL  105 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TTT--------EEEEEEETT--EEEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCccc------cceeEEEECC--EEEEE
Confidence            445542233344567888777877766 4  35589999999 55555444333211      1133444443  45555


Q ss_pred             EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeee
Q 010933          282 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT  360 (497)
Q Consensus       282 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~  360 (497)
                      .-.++...+||..+.+.+    ..+..              .+.=+.++  .+++.|+.++. ..++++|..+ .+...+
T Consensus       106 TWk~~~~f~yd~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~  164 (264)
T PF05096_consen  106 TWKEGTGFVYDPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRT  164 (264)
T ss_dssp             ESSSSEEEEEETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEE
T ss_pred             EecCCeEEEEccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEE
Confidence            566899999999876544    33332              12345565  56666666543 8999999875 666776


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      +.......          .+..++.+.|- +|...|=.=....|..-|..+|+
T Consensus       165 i~V~~~g~----------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  165 IQVTDNGR----------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             EE-EETTE----------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred             EEEEECCE----------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence            66554322          11112467775 66666655556677777877773

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.96  E-value=4.8  Score=36.67  Aligned_cols=150  Identities=15%  Similarity=0.082  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933          224 SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  303 (497)
Q Consensus       224 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  303 (497)
                      .++..++++..|.|+  .....++..+.+      .......+..+.-+++| .++++++.-....-||--.        
T Consensus       113 ~~~~~~l~~~~G~iy--~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--------  175 (302)
T PF14870_consen  113 GDGSAELAGDRGAIY--RTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--------  175 (302)
T ss_dssp             ETTEEEEEETT--EE--EESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------
T ss_pred             CCCcEEEEcCCCcEE--EeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------
Confidence            334444445444433  333345444432      23345778888899999 8777776665566677543        


Q ss_pred             ceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933          304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  383 (497)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
                      ..+..|...         -...|..|.|+|++.+.+.+..|.|++=+...   ....+..+....        ...-+.+
T Consensus       176 ~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~---~~~~w~~~~~~~--------~~~~~~~  235 (302)
T PF14870_consen  176 TTWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD---DGETWSEPIIPI--------KTNGYGI  235 (302)
T ss_dssp             SS-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT---EEEEE---B-TT--------SS--S-E
T ss_pred             ccceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCCC---CccccccccCCc--------ccCceee
Confidence            223322211         12569999999999988887778888877321   122222211110        0011223


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          384 FECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      .+++|.+++...++|+. |.+ +...+.|
T Consensus       236 ld~a~~~~~~~wa~gg~-G~l-~~S~DgG  262 (302)
T PF14870_consen  236 LDLAYRPPNEIWAVGGS-GTL-LVSTDGG  262 (302)
T ss_dssp             EEEEESSSS-EEEEEST-T-E-EEESSTT
T ss_pred             EEEEecCCCCEEEEeCC-ccE-EEeCCCC
Confidence            68999999887776665 443 3344444

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.81  E-value=4.1  Score=38.70  Aligned_cols=110  Identities=12%  Similarity=0.071  Sum_probs=55.7

Q ss_pred             CCeeEEEeCCCCCEEEEE-c-----------C-CeEEEEeCccC-cee--eEEeecCCCccCCCCCCeEEEEEeCCCCcE
Q 010933          215 FNINSISNNSDCETFVSA-D-----------D-LRINLWNLEIS-DQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNL  278 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~-~-----------d-~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  278 (497)
                      .....|+|.++|+++++- .           . ..|.+++-... ++.  ..+       +.......+.+++.+++   
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G---   83 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG---   83 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC---
Confidence            345678999999988773 2           1 26777754312 221  122       22222345788998886   


Q ss_pred             EEEEeCCCeEEEEEccCCcccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          279 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       279 l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      |+++......++.|........ +....+..-...      -..+......+.|.|||.+.++
T Consensus        84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~------~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQ------INNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCC------CCcccccccCceECCCCCEEEe
Confidence            4444455444444554321111 111122210000      0001245788999999987665

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=7.8  Score=39.14  Aligned_cols=89  Identities=15%  Similarity=0.136  Sum_probs=53.8

Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                      ...|++++..+.    .+....-.|. .+-.+.|+.+..+|+...+|++++|++- +. ......   ...+.....|..
T Consensus        63 ~~~I~If~~sG~----lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge-~ie~~s---vg~e~~~~~I~e  132 (829)
T KOG2280|consen   63 RPYIRIFNISGQ----LLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL-GE-FIESNS---VGFESQMSDIVE  132 (829)
T ss_pred             ceeEEEEecccc----chHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc-hh-hhcccc---cccccccCceeE
Confidence            346777777654    3333322344 7778999999888887899999999987 32 222100   012334456677


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRL  290 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v  290 (497)
                      +.+..+|   ++.-..+|.+.+
T Consensus       133 c~~f~~G---Vavlt~~g~v~~  151 (829)
T KOG2280|consen  133 CRFFHNG---VAVLTVSGQVIL  151 (829)
T ss_pred             EEEecCc---eEEEecCCcEEE
Confidence            7766677   444445555444

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.75  E-value=4  Score=38.78  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             cceEEEEEcCCCCEEEEee-----------cCC-eEEEEEec
Q 010933           33 DIVSAIEFDKTGDYLAVGD-----------RGG-RVILFETV   62 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~-----------~dg-~i~iwd~~   62 (497)
                      .....|+|.++|+++++-.           ..+ .|.+++-.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~   55 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDA   55 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcC
Confidence            3557899999999877642           223 77777654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02713 hypothetical protein; Provisional

Probab=93.55  E-value=8.1  Score=39.05  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=18.7

Q ss_pred             CCCEEEEEeCCC--cEEEEEcCCCCc
Q 010933          391 DGLHFATGSYSN--LLRIFSHGVGSA  414 (497)
Q Consensus       391 ~~~~l~s~~~dg--~i~vw~~~~~~~  414 (497)
                      +++..++||.||  .+..||..+.+-
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccc
Confidence            778888999888  677788777643

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.53  E-value=0.48  Score=40.99  Aligned_cols=79  Identities=9%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  350 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd  350 (497)
                      +...+ ++|++.+.+|.+++||+.+++..........--.... ...  ......|..+.++.+|.-+++-++|..+.|+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-ccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            34456 7899999999999999999876543322111100000 000  0234678888888888888877778889998


Q ss_pred             cCC
Q 010933          351 IRM  353 (497)
Q Consensus       351 ~~~  353 (497)
                      ...
T Consensus        94 ~~L   96 (219)
T PF07569_consen   94 PDL   96 (219)
T ss_pred             ccc
Confidence            764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.04  E-value=5.9  Score=34.87  Aligned_cols=164  Identities=14%  Similarity=0.067  Sum_probs=94.8

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---------C
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------R  285 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------d  285 (497)
                      ..-..+..-|||..-++-...-|.-.|-++.  .++.+.++   .+..........|++.| ++-+++..         .
T Consensus       104 a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt~f~lp---~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~  177 (353)
T COG4257         104 ASPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVTRFPLP---LEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPAR  177 (353)
T ss_pred             CCCceEEECCCCCeeEecCcceeEEecCccc--ceEEeecc---cccCCCcccceeeCCCc-cEEEeeccccceecCccc
Confidence            3444566778887666642225555555422  22222222   34455677888999999 88777753         2


Q ss_pred             CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeec
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIH  364 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~  364 (497)
                      +.|++|+...|                           ..-+.|+..|+|+.-++. .++.|-..|... + .-..+...
T Consensus       178 ~~i~vfpaPqG---------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P  228 (353)
T COG4257         178 NVISVFPAPQG---------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQP  228 (353)
T ss_pred             CceeeeccCCC---------------------------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCC
Confidence            34555554433                           346788899999877764 335555556543 2 22222211


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      +...            .+.+.+.-+|.|+.-++-...+.++.||-.+..-....|.+.+..
T Consensus       229 ~~~~------------~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~ar  277 (353)
T COG4257         229 NALK------------AGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKAR  277 (353)
T ss_pred             Cccc------------ccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCC
Confidence            1100            001457777888888888888899999877665554555544443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.95  E-value=7.9  Score=36.10  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFE   60 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd   60 (497)
                      .-+.|+|.|||+++++ ...|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            3478999999987765 5699999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.87  E-value=11  Score=37.68  Aligned_cols=171  Identities=12%  Similarity=0.060  Sum_probs=88.3

Q ss_pred             EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC--CCeEE-EEEeCCCCcEEEEEe------CCCeEEEEEccCCc
Q 010933          228 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVITS-AEFHPIYCNLLAYSS------SRGFVRLVDMRQSA  297 (497)
Q Consensus       228 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~-~~~~~~~~~~l~~~~------~dg~i~v~d~~~~~  297 (497)
                      .++.+ .|+.+.-.|.++++...+.-      ...+.  ..+.+ ..+. ++  .++++.      .+|.|.-+|.++|+
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~------~~~~~~~~~~tssP~v~-~g--~Vivg~~~~~~~~~G~v~AlD~~TG~  192 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKK------NGDYKAGYTITAAPLVV-KG--KVITGISGGEFGVRGYVTAYDAKTGK  192 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecc------cccccccccccCCcEEE-CC--EEEEeecccccCCCcEEEEEECCCCc
Confidence            45555 88899999988555544321      11111  01111 1111 33  444443      26899999999998


Q ss_pred             ccccccceeccccc----------ccCCcccc------ccccccccEEEEeeCCCEEEEEe------cC-----------
Q 010933          298 LCDHSARILRDAAE----------SHGSKSFF------TEIIASISDIKFANDGQHLLSRD------YM-----------  344 (497)
Q Consensus       298 ~~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~i~~~~~s~~g~~l~~~~------~~-----------  344 (497)
                      .+.+....-.. ..          ......+.      .+-...-..+++.|...++..+.      ++           
T Consensus       193 ~lW~~~~~p~~-~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~  271 (527)
T TIGR03075       193 LVWRRYTVPGD-MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS  271 (527)
T ss_pred             eeEeccCcCCC-cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence            65432111100 00          00000000      01112233567777766666543      12           


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL---HFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      +|.-.|+++ ++....++...+...      ..+......=+....+|+   .++.+..+|.+++.|..+++.+
T Consensus       272 s~vAld~~T-G~~~W~~Q~~~~D~w------D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDT-GKIKWHYQTTPHDEW------DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEcccc-CCEEEeeeCCCCCCc------cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            566778876 777777665333211      111111001133334666   7889999999999999998653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.55  E-value=12  Score=37.37  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=21.9

Q ss_pred             CCCC--cEEEEEeCCCeEEEEEccCCccc
Q 010933          273 PIYC--NLLAYSSSRGFVRLVDMRQSALC  299 (497)
Q Consensus       273 ~~~~--~~l~~~~~dg~i~v~d~~~~~~~  299 (497)
                      .+|.  ..++.+..+|.+.+.|.++|+.+
T Consensus       310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            4562  37888999999999999999864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.40  E-value=4  Score=38.65  Aligned_cols=149  Identities=11%  Similarity=0.084  Sum_probs=57.9

Q ss_pred             CcceEEEeecCCccceeeeeeccCCC-CCeeEEEeC--CCCCEE-EEE-cCCeEEEEeCccCc--eeeEEeecCCCccCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHD-FNINSISNN--SDCETF-VSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDD  261 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~l-~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~  261 (497)
                      +..+.+||+...   +.++++--+.. .....+.|.  |+...= +.+ -..+|..|--...+  +..+++++++...++
T Consensus       221 G~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  221 GHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             --EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             cCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence            456777777744   33443311222 234566764  434333 333 56666666442222  122333333221111


Q ss_pred             -----C-------CCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCcccc--ccccccc
Q 010933          262 -----L-------TEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--TEIIASI  326 (497)
Q Consensus       262 -----~-------~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i  326 (497)
                           .       ..-|+.+..|.|. ++|..+.. +|.|+.||+.........-+++-+-..........  ....+..
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP  376 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP  376 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred             ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence                 1       3568999999998 77766655 89999999986432211111111100000000000  0112345


Q ss_pred             cEEEEeeCCCEEEEE
Q 010933          327 SDIKFANDGQHLLSR  341 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~  341 (497)
                      .-+..|-||+.|...
T Consensus       377 qMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  377 QMVQLSLDGKRLYVT  391 (461)
T ss_dssp             --EEE-TTSSEEEEE
T ss_pred             CeEEEccCCeEEEEE
Confidence            778888899887765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.37  E-value=2.9  Score=40.12  Aligned_cols=90  Identities=21%  Similarity=0.230  Sum_probs=57.0

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCC
Q 010933          380 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS  459 (497)
Q Consensus       380 ~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~  459 (497)
                      .+.+..+..++.|..++-.|.+|.+.++=.+.... ...++..+..|++..+.-.  .++      .+.+          
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~-~s~~eDgk~~v~CRt~~i~--~~~------ftss----------  163 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGK-NSEFEDGKSTVNCRTTPVA--ERF------FTSS----------  163 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCc-cceecCCCceEEEEeeccc--cee------eccC----------
Confidence            34457888999999999999999877655332212 2556666666777777652  221      1110          


Q ss_pred             CCcccccccCCCeEEEEEecCC---C-EEEEEeCCceEEEe
Q 010933          460 GHHELSYNLSSKLLHLAWHPTT---N-LIACANGNSLFFHY  496 (497)
Q Consensus       460 ~~~~~~~~~~~~i~~l~~~p~~---~-~la~~~~~~~~i~~  496 (497)
                              ..-.+..++|||+.   . +++..+++.+.+|+
T Consensus       164 --------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~  196 (741)
T KOG4460|consen  164 --------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS  196 (741)
T ss_pred             --------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence                    11156788999976   3 44555577788886

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.33  E-value=13  Score=38.06  Aligned_cols=165  Identities=12%  Similarity=0.059  Sum_probs=89.4

Q ss_pred             CCEEEEEcCCeEEEEeCccCceeeE-----EeecCCCccC---------CCCCCeEEEEEeCCC-CcEEEEEeCCCeEEE
Q 010933          226 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL  290 (497)
Q Consensus       226 ~~~l~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~v  290 (497)
                      .++++.+..+.|.||+.+...+...     .+..++....         .....|..+....-| ...|+.+..||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            6788888899999999873222111     1111111000         012335555444322 267889999999999


Q ss_pred             EEccCCcccccccceeccccc------ccCCccccccccccccEEEEe--eCCCEEEEEec-CeEEEEecCCCCceeeee
Q 010933          291 VDMRQSALCDHSARILRDAAE------SHGSKSFFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~s--~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~  361 (497)
                      |.++.--...   ........      ...+. +........++++++  ...++||+++. ..|.||-...........
T Consensus       129 Yyt~~I~~~i---~~~~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~  204 (717)
T PF08728_consen  129 YYTETIIEAI---ERFSEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV  204 (717)
T ss_pred             EEHHHHHHHH---HhhccccccccccccCCCC-eEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence            9875311000   00000000      00011 111123578999998  77888988876 788887654311111111


Q ss_pred             e--ecccccccccccCCCCCccceeEEEEcCCC------CEEEEEeCCCcEEEEEc
Q 010933          362 K--IHEHLRPKLCDLYNNDSIFDKFECSVSGDG------LHFATGSYSNLLRIFSH  409 (497)
Q Consensus       362 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~l~s~~~dg~i~vw~~  409 (497)
                      +  .+...+               -+++|-++.      ..|++++-.|.+.+|++
T Consensus       205 ~s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  205 PSHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            0  122222               367877643      27888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=92.02  E-value=11  Score=35.34  Aligned_cols=119  Identities=8%  Similarity=-0.012  Sum_probs=68.6

Q ss_pred             CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933          212 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  291 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~  291 (497)
                      .-...++++.+.++++.++.|..|.+++=..+ .+...+....+   .......+.++.+.|++ .. +.++.+|.+.. 
T Consensus       212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~-~~~G~~G~v~~-  284 (334)
T PRK13684        212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EI-WAGGGNGTLLV-  284 (334)
T ss_pred             CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CE-EEEcCCCeEEE-
Confidence            33457889999999998888877776532233 34333321000   01122457888999876 54 44556775553 


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEec
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  351 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~  351 (497)
                      ....++.       |..... .      ..-....+.+.|..+++.+++|..|.|--|+-
T Consensus       285 S~d~G~t-------W~~~~~-~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        285 SKDGGKT-------WEKDPV-G------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             eCCCCCC-------CeECCc-C------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            3344422       211000 0      00013577888888888888888888887763

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.78  E-value=0.19  Score=50.86  Aligned_cols=109  Identities=17%  Similarity=0.296  Sum_probs=64.5

Q ss_pred             hhccccccchhhhhcCCCCCCCccc----CC---cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcc
Q 010933            6 EEASASLEWKCSQAFGERNPDEELQ----DV---DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMD   78 (497)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~----h~---~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~   78 (497)
                      ......+.|++.++-|+..+.-.+.    -.   +.|.-+-|-++.-++..+..++.|++.......             
T Consensus       150 ~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-------------  216 (1283)
T KOG1916|consen  150 RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-------------  216 (1283)
T ss_pred             HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-------------
Confidence            3445667899988777654322111    12   334444445577788888899999988776532             


Q ss_pred             cCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecC
Q 010933           79 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  141 (497)
Q Consensus        79 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~  141 (497)
                                 ...+++|...  .+.--.+...+.-++=. +|||..|+.++.||.++.|.+.
T Consensus       217 -----------~~l~rsHs~~--~~d~a~~~~g~~~l~~l-SpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  217 -----------RSLFRSHSQR--VTDMAFFAEGVLKLASL-SPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             -----------HHHHHhcCCC--cccHHHHhhchhhheee-CCCCcEEEEeecCCccceeeee
Confidence                       2445667621  00000111222223222 6899999999999999998765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.73  E-value=1.4  Score=38.10  Aligned_cols=78  Identities=12%  Similarity=-0.007  Sum_probs=49.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccc
Q 010933          386 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS  465 (497)
Q Consensus       386 ~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~  465 (497)
                      +.+..++++|++.+.+|.+++||+.+++......  .-.|+.......                               .
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--Si~pll~~~~~~-------------------------------~   62 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPV--SIAPLLNSSPVS-------------------------------D   62 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCc--cHHHHhcccccc-------------------------------c
Confidence            4456688999999999999999999874431110  001110000000                               0


Q ss_pred             cccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          466 YNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       466 ~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      ......|..+..+.+|.-|++-+.+..|.|+
T Consensus        63 ~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   63 KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            0334578888888888878877777788886

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.52  E-value=12  Score=34.88  Aligned_cols=184  Identities=12%  Similarity=0.098  Sum_probs=88.6

Q ss_pred             CCeeEEEeCC-CCCEEEEEcCCe------EEEEeCccCc---eeeEE---eecCC---CccCCCCCCeEEEEEeCCCCcE
Q 010933          215 FNINSISNNS-DCETFVSADDLR------INLWNLEISD---QCFNI---VDMKP---SNMDDLTEVITSAEFHPIYCNL  278 (497)
Q Consensus       215 ~~v~~~~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~~---~~~~~---~~~~~~~~~i~~~~~~~~~~~~  278 (497)
                      +.+..+.+.+ ++.+++.++++.      ++.+++....   ..+..   +.++.   ..+..-....-++++.+++ .+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence            4567888885 555555557776      6666655311   11111   11110   0111111244578887777 77


Q ss_pred             EEEEeCC------CeEEEEEccCCcccccccceecccc-cccCCc-cccccccccccEEEEeeCCCEEEEEe------cC
Q 010933          279 LAYSSSR------GFVRLVDMRQSALCDHSARILRDAA-ESHGSK-SFFTEIIASISDIKFANDGQHLLSRD------YM  344 (497)
Q Consensus       279 l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~~------~~  344 (497)
                      +++.-.+      ..|+.++.. |+..    ..+.... ..+... ..-......+-+|+++|+|+.|+++.      ++
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence            7766666      788888876 5543    1111100 000000 01112246788999999999555431      21


Q ss_pred             --e-------EEEEecC--CCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-----CCCcEEEEE
Q 010933          345 --N-------LKLWDIR--MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFS  408 (497)
Q Consensus       345 --~-------i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~vw~  408 (497)
                        .       ++++...  +.+.....+...-..+..      ....+.+..+.+-+++++|+-=-     ....++|+.
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~  247 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR  247 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence              1       5555443  223334443322221000      00122336888888988776221     234455555


Q ss_pred             cC
Q 010933          409 HG  410 (497)
Q Consensus       409 ~~  410 (497)
                      +.
T Consensus       248 v~  249 (326)
T PF13449_consen  248 VD  249 (326)
T ss_pred             EE
Confidence            44

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.38  E-value=4.4  Score=38.88  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc
Q 010933          230 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  308 (497)
Q Consensus       230 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  308 (497)
                      +.| .+..|.-.|.+..+..+.....+.   -.......+..-..+  .++|+++..|-|++||--..+..    ..+  
T Consensus       531 lvGlS~~svFrIDPR~~gNKi~v~esKd---Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----tal--  599 (776)
T COG5167         531 LVGLSDYSVFRIDPRARGNKIKVVESKD---YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TAL--  599 (776)
T ss_pred             EEeecccceEEecccccCCceeeeeehh---ccccccccccccccC--ceEEEecCCCceeeehhhcchhh----hcC--
Confidence            346 788888888876664444432221   011222233333334  48999999999999995432211    112  


Q ss_pred             cccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933          309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  352 (497)
Q Consensus       309 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~  352 (497)
                                 ++....|..+..+.+|+++++.....+.+-|++
T Consensus       600 -----------P~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         600 -----------PGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             -----------cccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence                       222357889999999999888766788888875

>PHA02713 hypothetical protein; Provisional

Probab=91.06  E-value=14  Score=37.36  Aligned_cols=20  Identities=5%  Similarity=0.016  Sum_probs=13.7

Q ss_pred             CCCEEEEEe-cC--eEEEEecCC
Q 010933          334 DGQHLLSRD-YM--NLKLWDIRM  353 (497)
Q Consensus       334 ~g~~l~~~~-~~--~i~lwd~~~  353 (497)
                      +|++.++|+ ++  .+..||..+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccc
Confidence            677777765 34  677788765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.81  E-value=21  Score=36.38  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=30.8

Q ss_pred             ccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeee
Q 010933          324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~  363 (497)
                      +.+..++.||+.++|+-=++ |.|.+-+... .+.+..+..
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~  256 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNC  256 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCC
Confidence            56788999999999988655 9999988875 666666653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.75  E-value=9.9  Score=32.64  Aligned_cols=143  Identities=11%  Similarity=0.054  Sum_probs=81.0

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933          214 DFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  283 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  283 (497)
                      ..+.+.-..+|+|++++.. .|         |.++.|-..  .+.-.+        ...-..-..++|+.+...+.++-+
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence            3345566778999886542 22         344444433  111111        011123357889988744455556


Q ss_pred             CCCeEEEEE--ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeee
Q 010933          284 SRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT  360 (497)
Q Consensus       284 ~dg~i~v~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~  360 (497)
                      .+-.|.-||  ..+|..... ..++......+..       ...--.+++..+|.+.++. +.++|...|..+ ++.+.+
T Consensus       178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e  248 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE  248 (310)
T ss_pred             CceEEeeeecCCCcccccCc-ceeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence            677887777  666654321 1222221110000       0122345667788877776 459999999987 999999


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcC
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                      ++-....+               ++++|--
T Consensus       249 iklPt~qi---------------tsccFgG  263 (310)
T KOG4499|consen  249 IKLPTPQI---------------TSCCFGG  263 (310)
T ss_pred             EEcCCCce---------------EEEEecC
Confidence            88776543               6888864

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.61  E-value=18  Score=35.24  Aligned_cols=33  Identities=9%  Similarity=0.183  Sum_probs=25.5

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCC
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~   64 (497)
                      -+.-+.|+|.|||++|++--..|.|++++..++
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            355689999999988877554699999986544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.37  E-value=18  Score=35.00  Aligned_cols=114  Identities=11%  Similarity=0.132  Sum_probs=65.5

Q ss_pred             eeEEEeCCCCCEEEEE--cC----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC----
Q 010933          217 INSISNNSDCETFVSA--DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----  286 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~--~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----  286 (497)
                      +...+++|+|++++.+  ..    ..++++|+.+ ++.+.-.      +..  .....+.|.+++ ..|+....+.    
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~~  195 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDG------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQRT  195 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEE------EEE--EESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCc------ccc--cccceEEEeCCC-CEEEEEEeCccccc
Confidence            3367889999999875  23    3699999994 4443310      111  112349999998 6555554332    


Q ss_pred             -------eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e---c-CeEEEEecCC
Q 010933          287 -------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---Y-MNLKLWDIRM  353 (497)
Q Consensus       287 -------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---~-~~i~lwd~~~  353 (497)
                             .|+.|.+.+...-  ...+++...           .......+..++|+++|+.. .   + ..+.+.++..
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~--d~lvfe~~~-----------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSE--DELVFEEPD-----------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG---EEEEC-TT-----------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             ccCCCCcEEEEEECCCChHh--CeeEEeecC-----------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence                   3677777654321  113444410           01124578889999998764 2   2 4678888875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.15  E-value=7.3  Score=41.35  Aligned_cols=103  Identities=10%  Similarity=-0.013  Sum_probs=67.2

Q ss_pred             CCeeEEEeCCCCCE-EEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          215 FNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       215 ~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      ....++.|+|.-.. .+.+ .|+.|++..+....+...        -.......++++|+|.| +.+++|-..|++.-|-
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~--------s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT--------SFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhc--------ccCcccceeeEEecccc-ceeeEecCCCeEEEee
Confidence            34567888885443 3445 899999887763333222        12355778999999999 9999999999999887


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ..-. ..    +.+.. .....        ...|.+++|-....++++
T Consensus       227 P~le-ik----~~ip~-Pp~~e--------~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  227 PSLE-IK----SEIPE-PPVEE--------NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cccc-ee----ecccC-CCcCC--------CcceeEEEEecceeEEEE
Confidence            5432 11    11111 00000        256899999887777776

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.85  E-value=6.7  Score=33.31  Aligned_cols=128  Identities=14%  Similarity=0.179  Sum_probs=71.0

Q ss_pred             EEEEeeCCCEEEEEecCeEEEEecCC-CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC----
Q 010933          328 DIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----  402 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~~~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg----  402 (497)
                      .+.-.+.+.++++.+.+.|.+|++.. ..+++.++..-..                +..+.++..|.||+|-=.+.    
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~----------------V~~l~y~~~GDYlvTlE~k~~~~~   85 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR----------------VLQLVYSEAGDYLVTLEEKNKRSP   85 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh----------------eeEEEeccccceEEEEEeecCCcc
Confidence            33333333444445558999999972 3455666654432                26899999999999866533    


Q ss_pred             --cEEEE---EcC--CCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEE
Q 010933          403 --LLRIF---SHG--VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL  475 (497)
Q Consensus       403 --~i~vw---~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l  475 (497)
                        .+|+|   +..  ........+-||..  ......+     .                  ..+....-...+.++.++
T Consensus        86 ~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v--~~~~~~~-----~------------------~~qleiiElPl~~~p~ci  140 (215)
T PF14761_consen   86 VDFVRAYFNWRSQKEENSPVRVRIAGHRV--TPSFNES-----S------------------KDQLEIIELPLSEPPLCI  140 (215)
T ss_pred             ceEEEEEEEhhhhcccCCcEEEEEccccc--ccCCCCc-----c------------------ccceEEEEecCCCCCCEE
Confidence              44554   222  11122122223211  0000000     0                  000111223346688899


Q ss_pred             EEecCCCEEEEEeCCceEEEe
Q 010933          476 AWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       476 ~~~p~~~~la~~~~~~~~i~~  496 (497)
                      +..|-..-|++|+.+.+.+|.
T Consensus       141 aCC~~tG~LlVg~~~~l~lf~  161 (215)
T PF14761_consen  141 ACCPVTGNLLVGCGNKLVLFT  161 (215)
T ss_pred             EecCCCCCEEEEcCCEEEEEE
Confidence            999987778999999999885

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.76  E-value=20  Score=34.51  Aligned_cols=52  Identities=15%  Similarity=0.112  Sum_probs=34.5

Q ss_pred             cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933          233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  294 (497)
Q Consensus       233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~  294 (497)
                      -||.+.+|+-+ .- .+...      +.. ---.-.+.|.+.. ..|++++.+..+.-|...
T Consensus       153 ~DG~L~~feqe-~~-~f~~~------lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  153 MDGSLSFFEQE-SF-AFSRF------LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             cCceEEEEeCC-cE-EEEEE------cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence            89999999976 22 22211      222 1122346788877 789999999889888764

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.29  E-value=12  Score=40.45  Aligned_cols=80  Identities=18%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccC-----ceeeEEeecC--------C--CccC-CCCCCeEEEEEeCCCCc
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEIS-----DQCFNIVDMK--------P--SNMD-DLTEVITSAEFHPIYCN  277 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~--------~--~~~~-~~~~~i~~~~~~~~~~~  277 (497)
                      ...|+++....+|+.+.+|.||.|+-.-.+..     .++.++ ++.        |  ..+. .+.++|..++.+... +
T Consensus       178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Ki-clt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~  255 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKI-CLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-N  255 (1311)
T ss_pred             CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccc-cCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-c
Confidence            45788999889999999996664432222211     112111 100        0  1123 567899999999887 8


Q ss_pred             EEEEEeCCCeEEEEEccC
Q 010933          278 LLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       278 ~l~~~~~dg~i~v~d~~~  295 (497)
                      .+.+-+..+.|++||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            999999999999999987

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.10  E-value=28  Score=35.34  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=16.6

Q ss_pred             cCCCCEEEEeecCC------eEEEEEecCC
Q 010933           41 DKTGDYLAVGDRGG------RVILFETVGG   64 (497)
Q Consensus        41 sp~g~~lasg~~dg------~i~iwd~~~~   64 (497)
                      +..+.+++.|+.++      .+..+|..++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~  311 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN  311 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcC
Confidence            44567778888763      6777887765

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.93  E-value=27  Score=35.86  Aligned_cols=71  Identities=13%  Similarity=0.011  Sum_probs=42.8

Q ss_pred             EEEEEeCCCCcEEEEEeCCC-----eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          267 TSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      +.++|-|+| ..+++-..||     .+.++.-+.-+.-     .+.          .-.+.......++|+-....++.+
T Consensus       250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHG-----ef~----------lr~~~dEk~~~~~wn~~s~vlav~  313 (1243)
T COG5290         250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHG-----EFD----------LRVGCDEKAFLENWNLLSTVLAVA  313 (1243)
T ss_pred             hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccC-----Ccc----------ccCCchhhhhhhhhhHHHHHHHHh
Confidence            457899999 8899877654     3444443221100     000          001112456777887777777777


Q ss_pred             ecCeEEEEecCC
Q 010933          342 DYMNLKLWDIRM  353 (497)
Q Consensus       342 ~~~~i~lwd~~~  353 (497)
                      ..+.+++|-..+
T Consensus       314 ~~n~~~lwttkN  325 (1243)
T COG5290         314 EGNLLKLWTTKN  325 (1243)
T ss_pred             hcceEEEEEccc
Confidence            779999998653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.62  E-value=22  Score=33.55  Aligned_cols=151  Identities=11%  Similarity=0.054  Sum_probs=78.4

Q ss_pred             CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--C-CCCcEEEEEeCCCeEEEEEcc---CCcccccccceecc
Q 010933          235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMR---QSALCDHSARILRD  308 (497)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~  308 (497)
                      ..|++|.+......++.+.-....+......++.+++-  | +|..+.++...+|.+..|-+.   .+....+.++.|..
T Consensus       127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            47899987632222332110000011122346777763  3 353466667789988888775   23333334455554


Q ss_pred             cccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCce----eeeeeecccccccccccCCCCCccce
Q 010933          309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDK  383 (497)
Q Consensus       309 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
                                    .+.+-.|.......+|+.+.+ .-|.-|+.+.....    +....+ ....            -++
T Consensus       207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l~------------aDv  259 (381)
T PF02333_consen  207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGLV------------ADV  259 (381)
T ss_dssp             --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB-------------S-E
T ss_pred             --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc-cccc------------cCc
Confidence                          246888888888888988865 66777777642221    111111 1111            112


Q ss_pred             eEEEE--cCCC-CEEEEEeC-CCcEEEEEcCCC
Q 010933          384 FECSV--SGDG-LHFATGSY-SNLLRIFSHGVG  412 (497)
Q Consensus       384 ~~~~~--s~~~-~~l~s~~~-dg~i~vw~~~~~  412 (497)
                      -.+++  ..++ .||+..+. +++..||+.+..
T Consensus       260 EGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  260 EGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             cceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            24544  3444 35655554 778999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.31  E-value=22  Score=33.13  Aligned_cols=131  Identities=15%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCe------EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGF------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  337 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  337 (497)
                      +.+..+.+.+++ ..+++.+.+|.      +..+++.................-.......+..-.-..-+|++.++|.+
T Consensus        20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            556788898765 56777777777      65555544110000001111000000000001111113457788778887


Q ss_pred             EEEEe-c------CeEEEEecCCCCceeeeeeecccccccc---cccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          338 LLSRD-Y------MNLKLWDIRMDSTPVATFKIHEHLRPKL---CDLYNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       338 l~~~~-~------~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      +++.. +      ..|+-++..  ++.+..+..........   .....+...   -+++++|||+.|+++.+
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~---E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGF---EGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCe---EEEEECCCCCEEEEEEC
Confidence            77753 3      456666653  66666553322211000   001111112   48999999997776665

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.26  E-value=10  Score=36.69  Aligned_cols=88  Identities=7%  Similarity=0.101  Sum_probs=48.5

Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-Cc---ccccccceecccccccCCccccccccccccEEEEeeCC----
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SA---LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG----  335 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g----  335 (497)
                      -.|..+..++.| ..++..+.+|.+.++=.+. |+   ..+.. .+...........-+.....-.+..++|+|+.    
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk-~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGK-STVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCC-ceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence            346778889999 8888888998766543211 10   00000 00111011111111111222356788999975    


Q ss_pred             CEEEEEecCeEEEEecCC
Q 010933          336 QHLLSRDYMNLKLWDIRM  353 (497)
Q Consensus       336 ~~l~~~~~~~i~lwd~~~  353 (497)
                      .+++-.+|+.+|+||+..
T Consensus       182 hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             eEEEEecCcEEEEEecCC
Confidence            455556789999999975

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.02  E-value=14  Score=35.62  Aligned_cols=103  Identities=11%  Similarity=0.113  Sum_probs=56.2

Q ss_pred             cEEE-EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--------CEEEEEecCeEE
Q 010933          277 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--------QHLLSRDYMNLK  347 (497)
Q Consensus       277 ~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--------~~l~~~~~~~i~  347 (497)
                      ++|+ .+.....++-.|+..|+.+    ..|..|.              .+ -+.|.|..        +.|+.-++..|.
T Consensus       480 sli~~dg~~~~kLykmDIErGkvv----eeW~~~d--------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svF  540 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVV----EEWDLKD--------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVF  540 (776)
T ss_pred             ceEEecCCCcccceeeecccceee----eEeecCC--------------cc-eeecCCchhHHhcCccceEEeecccceE
Confidence            4443 4555677888888888766    5555521              22 56666643        233333665555


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      -.|.+..+..+......... .        ..-   .+..-...+.|+|.+|..|-|++||.-
T Consensus       541 rIDPR~~gNKi~v~esKdY~-t--------Kn~---Fss~~tTesGyIa~as~kGDirLyDRi  591 (776)
T COG5167         541 RIDPRARGNKIKVVESKDYK-T--------KNK---FSSGMTTESGYIAAASRKGDIRLYDRI  591 (776)
T ss_pred             EecccccCCceeeeeehhcc-c--------ccc---ccccccccCceEEEecCCCceeeehhh
Confidence            55665544333322211110 0        000   122222345699999999999999954

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.85  E-value=20  Score=32.29  Aligned_cols=57  Identities=5%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC------CCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      |.|-+||+.  ++.++++......-             .-+.++..|      .+.+|+.--.||+|..||..+++.+
T Consensus       222 G~VdvFd~~--G~l~~r~as~g~LN-------------aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       222 GYVNVFTLN--GQLLRRVASSGRLN-------------APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             ceEEEEcCC--CcEEEEeccCCccc-------------CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence            789999985  89999885433221             115788766      4677777777999999999988655

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.75  E-value=21  Score=32.42  Aligned_cols=154  Identities=13%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCC----cEEEEE-eCCCeEEEEEccCCcccccccceecccc
Q 010933          236 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAA  310 (497)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~  310 (497)
                      .|.+||+. +.+.++.+.+++.... ..+.+..+.+.....    .+++.+ +..+-|.|+|+.+++..    ++... .
T Consensus        35 KLv~~Dl~-t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~-~  107 (287)
T PF03022_consen   35 KLVAFDLK-TNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHN-S  107 (287)
T ss_dssp             EEEEEETT-TTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETC-G
T ss_pred             EEEEEECC-CCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecC-C
Confidence            78888998 5567777776654444 556778888877321    233333 33468999999998654    33222 1


Q ss_pred             cccCCc-ccc------ccccccccEEEEee---CCCEEEEEecCeEEEEecCCC----Cc---------eeeeeeecccc
Q 010933          311 ESHGSK-SFF------TEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMD----ST---------PVATFKIHEHL  367 (497)
Q Consensus       311 ~~~~~~-~~~------~~~~~~i~~~~~s~---~g~~l~~~~~~~i~lwd~~~~----~~---------~~~~~~~~~~~  367 (497)
                      ..+.+. ..+      -.....+..++.+|   +|++|....-..-++|.+.+.    ..         .++.+ +....
T Consensus       108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~  186 (287)
T PF03022_consen  108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS  186 (287)
T ss_dssp             CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---
T ss_pred             cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC
Confidence            111111 000      01123477777766   677777765444445544320    10         01111 11110


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      .              ...++.+++|.+.++--..+.|..|+...
T Consensus       187 ~--------------s~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  187 Q--------------SDGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             S--------------ECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             C--------------CceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence            0              03789999999999999999999999876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.64  E-value=3.7  Score=38.65  Aligned_cols=153  Identities=12%  Similarity=0.061  Sum_probs=85.1

Q ss_pred             cccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCcccee-EEEEcCCCCEEEEEeCC
Q 010933          323 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF-ECSVSGDGLHFATGSYS  401 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~s~~~d  401 (497)
                      ...+..+-..|||+.+..-+..++.++++.+..-..+.+-....          ++....++ .+..-..|.-|..++.|
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dsp----------g~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSP----------GDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCC----------CchHHHHHHHHHHHhCceeEEEEcCC
Confidence            35678888999999998877688999998742111221111100          00110011 12223356678889999


Q ss_pred             CcEEEE-EcCCCCcceEEEeccCcceeeeE--------eecCCCcccccccceeEeeccCc-eec-CCCCCcccccccCC
Q 010933          402 NLLRIF-SHGVGSAGGITVEAGKNENRKPI--------LQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSS  470 (497)
Q Consensus       402 g~i~vw-~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~  470 (497)
                      |.|.-| |+..+...      |-+.++...        ..|+++.+.     +++-...|. ..+ .+.+........-.
T Consensus       290 G~vsQWFdvr~~~~p------~l~h~R~f~l~pa~~~~l~pe~~rkg-----F~~l~~~G~L~~f~st~~~~lL~~~~~~  358 (733)
T COG4590         290 GLVSQWFDVRRDGQP------HLNHIRNFKLAPAEVQFLLPETNRKG-----FYSLYRNGTLQSFYSTSEKLLLFERAYQ  358 (733)
T ss_pred             CceeeeeeeecCCCC------cceeeeccccCcccceeeccccccce-----EEEEcCCCceeeeecccCcceehhhhhc
Confidence            998877 44433221      112222222        223323333     666666666 555 33333222223334


Q ss_pred             CeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          471 KLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       471 ~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      .+..+++||.+.+|++-..+++.++.
T Consensus       359 ~~~~~~~Sp~~~~Ll~e~~gki~~~~  384 (733)
T COG4590         359 APQLVAMSPNQAYLLSEDQGKIRLAQ  384 (733)
T ss_pred             CcceeeeCcccchheeecCCceEEEE
Confidence            67789999999999998887777764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.47  E-value=28  Score=33.39  Aligned_cols=113  Identities=10%  Similarity=0.071  Sum_probs=67.7

Q ss_pred             CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce-----eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe
Q 010933          213 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  287 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  287 (497)
                      ....+..+.+.+++..++++.+|.+..-+ . .++     .+...     ........+.++.+.+++ . ++.++..|.
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~  349 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLTRGGGLYVSK-G-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-E-AWAAGGSGI  349 (398)
T ss_pred             CccceeeeeEcCCCCEEEEeCCceEEEec-C-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-c-EEEEECCCc
Confidence            34568889999999999888777765433 2 222     11110     011122458889999886 4 555667776


Q ss_pred             EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEE
Q 010933          288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  349 (497)
Q Consensus       288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lw  349 (497)
                      +.... ..|+       .|..... .      ......++.+.|.++++.+++|.+|.|.-|
T Consensus       350 v~~s~-D~G~-------tW~~~~~-~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        350 LLRST-DGGK-------SWKRDKG-A------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             EEEeC-CCCc-------ceeEccc-c------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            66543 3332       2221000 0      011246789999888999999988887654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.41  E-value=18  Score=34.43  Aligned_cols=119  Identities=10%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|.+++|  ++|++.++.--.|++|.+++....+.+.....                                      
T Consensus        67 G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~--------------------------------------  106 (657)
T KOG2377|consen   67 GEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ--------------------------------------  106 (657)
T ss_pred             CceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHH--------------------------------------
Confidence            88999999  78999999999999999998844332111000                                      


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                    +|     +.....|....|+.+. -++.-.+.-+-+|-+....+.+..       .+.|...|.-.
T Consensus       107 --------------~c-----k~k~~~IlGF~W~~s~-e~A~i~~~G~e~y~v~pekrslRl-------Vks~~~nvnWy  159 (657)
T KOG2377|consen  107 --------------EC-----KTKNANILGFCWTSST-EIAFITDQGIEFYQVLPEKRSLRL-------VKSHNLNVNWY  159 (657)
T ss_pred             --------------Hh-----ccCcceeEEEEEecCe-eEEEEecCCeEEEEEchhhhhhhh-------hhhcccCccEE
Confidence                          01     2334457788887663 444444555666665533444433       45677888888


Q ss_pred             EEeCCCCcEEEEEe--CCCeEEEEEccCC
Q 010933          270 EFHPIYCNLLAYSS--SRGFVRLVDMRQS  296 (497)
Q Consensus       270 ~~~~~~~~~l~~~~--~dg~i~v~d~~~~  296 (497)
                      .|.++. +.++.++  ..+.+.=+-++++
T Consensus       160 ~yc~et-~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  160 MYCPET-AVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEcccc-ceEeeeccccccccccEEEeec
Confidence            888887 5444333  3444444555544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.04  E-value=17  Score=39.49  Aligned_cols=160  Identities=14%  Similarity=0.125  Sum_probs=82.0

Q ss_pred             cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--------eCCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010933          233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  304 (497)
Q Consensus       233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  304 (497)
                      .|+.+.+|+.+.++....        +.+.+..|..+..        -|.= +++++...--.|.++-+.-.+..... .
T Consensus        97 iDn~L~lWny~~~~e~~~--------~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~ilgV~~~~~~~~~-~  166 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAE--------YDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIVILGVSFDEFTGEL-S  166 (1311)
T ss_pred             eCCeEEEEEcCCCCcccc--------ccchhhhheeeeeecCCCCcchhhh-heeEEecccceEEEEEEEeccccCcc-c
Confidence            588999999995444322        3445555555543        2222 23333344445555544322211100 1


Q ss_pred             eecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC----CC--Cc-eeeeeee---ccccccccccc
Q 010933          305 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR----MD--ST-PVATFKI---HEHLRPKLCDL  374 (497)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~----~~--~~-~~~~~~~---~~~~~~~~~~~  374 (497)
                      .+..+       ..+......|+++....+|+.+++|.||.  +|.+.    .+  ++ +.+.-..   -...++.+...
T Consensus       167 ~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~  237 (1311)
T KOG1900|consen  167 IFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV  237 (1311)
T ss_pred             ccccc-------eeeecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence            11110       00011124688899888999999998874  44432    11  00 1000000   00011111111


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      . ....-+|..++.....+.|.+-++.|.|.+|++...
T Consensus       238 ~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  238 P-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             C-CCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            1 011112368999888889999999999999999873

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.69  E-value=13  Score=28.89  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=49.8

Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      ..-.|.....-|++++..|+|.|++......                          ...+  .-..++.+.+...|++|
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~--------------------------~~~~--~~~~i~~LNin~~ital   53 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQ--------------------------RTGR--QDSDISFLNINQEITAL   53 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCcccc--------------------------cccc--ccCceeEEECCCceEEE
Confidence            3456777777899999999999999765432                          0000  01124445555778888


Q ss_pred             EEEe---cCCCCEEEEEeCCccEEEeecCchh
Q 010933          116 RWCA---APNGSMFILSTNDKTIKLWKVRDQK  144 (497)
Q Consensus       116 ~~~~---s~~~~~l~s~s~d~~i~iw~~~~~~  144 (497)
                      +--+   +.+...|+.|+. ..+..||++...
T Consensus        54 aaG~l~~~~~~D~LliGt~-t~llaYDV~~N~   84 (136)
T PF14781_consen   54 AAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS   84 (136)
T ss_pred             EEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence            6543   223445555554 579999998755

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.91  E-value=7.9  Score=32.08  Aligned_cols=30  Identities=13%  Similarity=0.081  Sum_probs=24.7

Q ss_pred             eeEEEEcCCC------CEEEEEeCCCcEEEEEcCCC
Q 010933          383 KFECSVSGDG------LHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       383 ~~~~~~s~~~------~~l~s~~~dg~i~vw~~~~~  412 (497)
                      +..++|||.|      .+||+.+.+|.|.||.-...
T Consensus        88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            4799999953      47889999999999997643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.41  E-value=9  Score=36.66  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=33.7

Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  308 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  308 (497)
                      ...+.+++.+|++ .+.|+...=|+|.++|+.++..+    +.|++
T Consensus       307 ~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv----rmWKG  347 (415)
T PF14655_consen  307 KREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV----RMWKG  347 (415)
T ss_pred             CceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh----hhhcc
Confidence            3457889999998 88888877899999999998766    66665

>PHA03098 kelch-like protein; Provisional

Probab=85.25  E-value=44  Score=33.65  Aligned_cols=21  Identities=5%  Similarity=0.036  Sum_probs=13.6

Q ss_pred             cEEEEEeCC--------CeEEEEEccCCc
Q 010933          277 NLLAYSSSR--------GFVRLVDMRQSA  297 (497)
Q Consensus       277 ~~l~~~~~d--------g~i~v~d~~~~~  297 (497)
                      .+++.|+.+        ..+.+||..+.+
T Consensus       439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        439 KIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             EEEEECCccCCCCCcccceEEEecCCCCc
Confidence            666777643        237888887654

>PRK13684 Ycf48-like protein; Provisional

Probab=85.22  E-value=33  Score=32.09  Aligned_cols=112  Identities=16%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      ...+..+.+.|++ .+++ .+..|.+..- .+.+.      +.|..+..         .-...++++.+.++++.++++.
T Consensus       172 ~g~~~~i~~~~~g-~~v~-~g~~G~i~~s-~~~gg------~tW~~~~~---------~~~~~l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVA-VSSRGNFYST-WEPGQ------TAWTPHQR---------NSSRRLQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             cceEEEEEECCCC-eEEE-EeCCceEEEE-cCCCC------CeEEEeeC---------CCcccceeeeEcCCCCEEEEec
Confidence            4578899999987 5554 4555654432 11111      11221100         0125689999999999988887


Q ss_pred             cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      .|.+++=... ++..-.....+...           .-+.+..+.+.+++..++ ++.+|.+.
T Consensus       234 ~G~~~~~s~d-~G~sW~~~~~~~~~-----------~~~~l~~v~~~~~~~~~~-~G~~G~v~  283 (334)
T PRK13684        234 GGQIRFNDPD-DLESWSKPIIPEIT-----------NGYGYLDLAYRTPGEIWA-GGGNGTLL  283 (334)
T ss_pred             CCEEEEccCC-CCCccccccCCccc-----------cccceeeEEEcCCCCEEE-EcCCCeEE
Confidence            7776532222 23322221111000           001125788998877555 44566554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.88  E-value=5  Score=23.58  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             eCCCEEEEEe--cCeEEEEecCCCCceeeeeeecccc
Q 010933          333 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       333 ~~g~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                      |++++|+++.  ++.|.++|..+ ++.+..+.....+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P   36 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP   36 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence            5777777763  39999999976 7777777664443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.88  E-value=0.14  Score=48.16  Aligned_cols=131  Identities=14%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE--e
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--D  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~  342 (497)
                      ......|-|.+ .-++.++.+..+..||-.. +..      .+.            ...+....|+|+-+|..++..  .
T Consensus        36 ~pi~~~w~~e~-~nlavaca~tiv~~YD~ag-q~~------le~------------n~tg~aldm~wDkegdvlavlAek   95 (615)
T KOG2247|consen   36 GPIIHRWRPEG-HNLAVACANTIVIYYDKAG-QVI------LEL------------NPTGKALDMAWDKEGDVLAVLAEK   95 (615)
T ss_pred             ccceeeEecCC-CceehhhhhhHHHhhhhhc-cee------ccc------------CCchhHhhhhhccccchhhhhhhc
Confidence            33455788888 6688888888899998543 222      111            012456778888888766653  3


Q ss_pred             cCeEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          343 YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      .+.+.+||+.+.  .-+++.  +....                .=+.|++....++.|...|.+.|++..+.+.. ....
T Consensus        96 ~~piylwd~n~e--ytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~G  156 (615)
T KOG2247|consen   96 TGPIYLWDVNSE--YTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMG  156 (615)
T ss_pred             CCCeeechhhhh--hHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccchhhh-hhhc
Confidence            499999999752  222222  21111                12789999999999999999999998876443 3344


Q ss_pred             ccCcceeeeEeecC
Q 010933          421 AGKNENRKPILQAA  434 (497)
Q Consensus       421 ~~~~~v~~~~~~~~  434 (497)
                      .|...+.+.++.+.
T Consensus       157 kh~RRgtq~av~lE  170 (615)
T KOG2247|consen  157 KHQRRGTQIAVTLE  170 (615)
T ss_pred             ccccceeEEEeccc
Confidence            46666777777663

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.26  E-value=6.2  Score=37.28  Aligned_cols=106  Identities=11%  Similarity=0.072  Sum_probs=59.1

Q ss_pred             CCCEEEEE-cCCeEEEE-eCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010933          225 DCETFVSA-DDLRINLW-NLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  301 (497)
Q Consensus       225 ~~~~l~~~-~d~~i~iw-d~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  301 (497)
                      .|..+..+ .||.|.-| |++.+++. ...+  +  .+.-....+..+.-..+. +-+++-+..|++.++.....+... 
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~--R--~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL-  352 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI--R--NFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLL-  352 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCCcceee--e--ccccCcccceeecccccc-ceEEEEcCCCceeeeecccCccee-
Confidence            45556666 77777666 55533321 1110  0  011111222222222222 557777778888877655433221 


Q ss_pred             ccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCC
Q 010933          302 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM  353 (497)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~  353 (497)
                          ++.             -...+.-+++||++.++++-+.|.++++.+++
T Consensus       353 ----~~~-------------~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N  387 (733)
T COG4590         353 ----FER-------------AYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN  387 (733)
T ss_pred             ----hhh-------------hhcCcceeeeCcccchheeecCCceEEEEecC
Confidence                111             01346778999999999987779999999976

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.04  E-value=41  Score=32.25  Aligned_cols=155  Identities=8%  Similarity=0.011  Sum_probs=80.9

Q ss_pred             eeEEEeCCCCCEEEEEcCCeEE-EEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          217 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      ...+..+++|..++.+..|.+. -||-.  ....+.+      -......+.++.+.+++ .++++ +.+|.+.. ....
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~-g~~G~l~~-S~d~  309 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLL-TRGGGLYV-SKGT  309 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEE-eCCceEEE-ecCC
Confidence            4455667888888888555444 34422  2111221      11234567899999988 66554 46666543 2223


Q ss_pred             CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933          296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  375 (497)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (497)
                      ++.-.  ...+.....        ..-...+..+.|.+++..+++|..|.+....-  +++.-........ ++      
T Consensus       310 G~~~~--~~~f~~~~~--------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~-~~------  370 (398)
T PLN00033        310 GLTEE--DFDFEEADI--------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADN-IA------  370 (398)
T ss_pred             CCccc--ccceeeccc--------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCC-CC------
Confidence            21100  001111000        00013488899999999999998887666542  2443333221111 00      


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933          376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  407 (497)
Q Consensus       376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw  407 (497)
                        ..   .+.+.|.++++.++ .+.+|.|.-|
T Consensus       371 --~~---ly~v~f~~~~~g~~-~G~~G~il~~  396 (398)
T PLN00033        371 --AN---LYSVKFFDDKKGFV-LGNDGVLLRY  396 (398)
T ss_pred             --cc---eeEEEEcCCCceEE-EeCCcEEEEe
Confidence              01   15889877766554 5556776554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=83.55  E-value=54  Score=33.29  Aligned_cols=24  Identities=8%  Similarity=0.306  Sum_probs=17.0

Q ss_pred             CCCEEEEEeCCCc-----EEEEEcCCCCc
Q 010933          391 DGLHFATGSYSNL-----LRIFSHGVGSA  414 (497)
Q Consensus       391 ~~~~l~s~~~dg~-----i~vw~~~~~~~  414 (497)
                      ++...+.||.|+.     |..||..+.+-
T Consensus       475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  475 NGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             CCEEEEECCccCCCccceEEEEcCCCCce
Confidence            6677788887763     67788776543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.54  E-value=41  Score=34.64  Aligned_cols=31  Identities=13%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEec
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV   62 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~   62 (497)
                      .+.|-+..||.|.+.++....+..|.+++..
T Consensus       112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~  142 (1243)
T COG5290         112 SNGIVAASWSADEKTWCVVTSTREILLFDKY  142 (1243)
T ss_pred             cCceEEEeeccCCceEEEEEcCceEEEEecc
Confidence            4688899999999977777777889888753

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.53  E-value=3  Score=24.25  Aligned_cols=29  Identities=10%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             CCcceEEEEEcCCCCEEEEeec-C--CeEEEE
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDR-G--GRVILF   59 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~-d--g~i~iw   59 (497)
                      ....-.+..|||||++|+-.+. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4456788999999999887664 3  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.05  E-value=4.6  Score=23.43  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=15.5

Q ss_pred             CCCeEEEEEecCCCEEEEEe
Q 010933          469 SSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       469 ~~~i~~l~~~p~~~~la~~~  488 (497)
                      .......+|+|||+.|+.++
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s   27 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTS   27 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEE
T ss_pred             CccccCEEEecCCCEEEEEe
Confidence            34567889999999999877

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.52  E-value=11  Score=31.21  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             CeEEEEEeCCC-----CcEEEEEeCCCeEEEEEccCC
Q 010933          265 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQS  296 (497)
Q Consensus       265 ~i~~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~~  296 (497)
                      .+..++|+|.|     .-+|++.+.++.|.||.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            78899999964     247899999999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PHA03098 kelch-like protein; Provisional

Probab=81.63  E-value=62  Score=32.61  Aligned_cols=22  Identities=9%  Similarity=0.311  Sum_probs=15.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCC
Q 010933          391 DGLHFATGSYS-----NLLRIFSHGVG  412 (497)
Q Consensus       391 ~~~~l~s~~~d-----g~i~vw~~~~~  412 (497)
                      +++.++.||.+     +.+.+||..+.
T Consensus       487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        487 NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            67777777764     46788887765

>PRK10115 protease 2; Provisional

Probab=81.25  E-value=74  Score=33.25  Aligned_cols=33  Identities=9%  Similarity=0.146  Sum_probs=24.8

Q ss_pred             cceEEEEEcCCCCEEEEee-----cCCeEEEEEecCCc
Q 010933           33 DIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGK   65 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~-----~dg~i~iwd~~~~~   65 (497)
                      -.+..+.+||||++||.+.     +...|++-|+.+++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~  164 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN  164 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence            4577889999999998754     23468888887764

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.82  E-value=0.3  Score=46.09  Aligned_cols=100  Identities=9%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          215 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      .....++|..++..++. + ..+.+.+||+.+ ....+. +    .-..+....  +.|++.+ ..++.+...|.+.+++
T Consensus        75 g~aldm~wDkegdvlavlAek~~piylwd~n~-eytqqL-E----~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viyn  145 (615)
T KOG2247|consen   75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS-EYTQQL-E----SGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYN  145 (615)
T ss_pred             hhHhhhhhccccchhhhhhhcCCCeeechhhh-hhHHHH-h----ccCcchHHH--HhhccCC-ccccccccccceEEEe
Confidence            34556778777777765 5 899999999983 322221 0    011122222  6789888 8888898999999999


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ..+.+..    -...             .|...++++++.+.+..+..
T Consensus       146 hgtsR~i----iv~G-------------kh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  146 HGTSRRI----IVMG-------------KHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             ccchhhh----hhhc-------------ccccceeEEEecccceeeec
Confidence            8876543    1111             14467888888887755544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=80.75  E-value=41  Score=29.92  Aligned_cols=144  Identities=6%  Similarity=-0.022  Sum_probs=71.6

Q ss_pred             EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010933          228 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  306 (497)
Q Consensus       228 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  306 (497)
                      ...-. .++...+||.. .-+....+.     ..   ..=..++  .++ ..|+.......|+++|..+.+..    +.+
T Consensus       102 l~qLTWk~~~~f~yd~~-tl~~~~~~~-----y~---~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~----~~i  165 (264)
T PF05096_consen  102 LYQLTWKEGTGFVYDPN-TLKKIGTFP-----YP---GEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEV----RTI  165 (264)
T ss_dssp             EEEEESSSSEEEEEETT-TTEEEEEEE------S---SS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEE----EEE
T ss_pred             EEEEEecCCeEEEEccc-cceEEEEEe-----cC---CcceEEE--cCC-CEEEEECCccceEEECCcccceE----EEE
Confidence            33445 78899999998 444444432     21   2235555  445 55666666778999998876543    222


Q ss_pred             cccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccc--cCCCCCccce
Q 010933          307 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDK  383 (497)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  383 (497)
                      .... ..       .....++-+.+- +|...|-- ....|...|..+ ++....+....-....-..  ....+.+  .
T Consensus       166 ~V~~-~g-------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dV--L  233 (264)
T PF05096_consen  166 QVTD-NG-------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDV--L  233 (264)
T ss_dssp             E-EE-TT-------EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS---E
T ss_pred             EEEE-CC-------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCe--e
Confidence            2200 00       011346667775 56544443 237888888886 7777766432211000000  0001122  2


Q ss_pred             eEEEEcCCCCEEEEEe
Q 010933          384 FECSVSGDGLHFATGS  399 (497)
Q Consensus       384 ~~~~~s~~~~~l~s~~  399 (497)
                      +.+++.|..+.|...|
T Consensus       234 NGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  234 NGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EeEeEeCCCCEEEEEe
Confidence            7999998766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	497
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-104

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/483 (42%), Positives = 293/483 (60%), Gaps = 51/483 (10%)
Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRS 71
           ++W  SQ  G    D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+           
Sbjct: 10  IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72  ELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 131
             E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTN
Sbjct: 58  --EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115
Query: 132 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191
           DKTIKLWK        I E D  P    E   L E++    +  P+      +     M 
Sbjct: 116 DKTIKLWK--------ISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMD 161
Query: 192 TKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNI 251
                    V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNI
Sbjct: 162 LM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNI 214
Query: 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 311
           VD+KP+NM++LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E
Sbjct: 215 VDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PE 273
Query: 312 SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371
              ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KL
Sbjct: 274 DPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKL 333
Query: 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 431
           C LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP  
Sbjct: 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRT 390
Query: 432 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491
              PR   +S         R+  E S       S + + K+LH AWHP  N+IA A  N+
Sbjct: 391 VLKPRKVCASGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNN 438
Query: 492 LFF 494
           L+ 
Sbjct: 439 LYI 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	497
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.39
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.23
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.1
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.02
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.92
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.91
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.86
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.84
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.81
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.71
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.71
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.64
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.61
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.61
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.61
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.55
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.5
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.49
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.44
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.44
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.4
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.4
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.4
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.36
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.35
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.33
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.21
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.2
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.13
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.84
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.84
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.79
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.73
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.72
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.69
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.64
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.63
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.61
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.55
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.52
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.45
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.36
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.36
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.33
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.31
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.23
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.19
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.99
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.88
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.86
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.84
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.8
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.78
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.73
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.57
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.48
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.44
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.39
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.97
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.71
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.69
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.63
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.58
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.57
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.36
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.26
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.25
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.75
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.27
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.87
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.68
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.46
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.71
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.35
3ott_A	758	Two-component system sensor histidine kinase; beta	89.22
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.91
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	82.5
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.21

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.8e-48  Score=376.32  Aligned_cols=435  Identities=45%  Similarity=0.810  Sum_probs=318.5

Q ss_pred             ccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY   89 (497)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (497)
                      ..+.|++.|+|++  ..+.++|.+.|++++|+|+|++||+|+.||.|+|||+.+++..            ......+++.
T Consensus         8 ~~~~w~~~q~~~~--~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~------------~~~~~~~~~~   73 (447)
T 3dw8_B            8 NDIQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI------------QSHSRGEYNV   73 (447)
T ss_dssp             CCCCCEEEECCSC--SSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCEEE
T ss_pred             cceeEEEEEeccc--ccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC------------CcccccceeE
Confidence            4567999999987  4556789999999999999999999999999999999876420            0111234566


Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCC--CEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~--~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      ...+.+|.++|++++++.+.+.|++++|+  |++  ..|++++.|+.|++|++..+...... ....         ...+
T Consensus        74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~---------~~~g  141 (447)
T 3dw8_B           74 YSTFQSHEPEFDYLKSLEIEEKINKIRWL--PQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLK---------EEDG  141 (447)
T ss_dssp             EEEEECCCCEEEGGGTEEECCCCCEEEEC--CCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC-------------
T ss_pred             ecccccccccccccccccccCceEEEEEc--CCCCcceEEEeCCCCeEEEEecccccCCcce-eccc---------Cccc
Confidence            88899999999999999999999999995  565  79999999999999999876543210 0000         0011


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  247 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~  247 (497)
                      ........... .          ...+..........+.+.+..+|...|.+++|+|+++.|++|.|+.|++||++..++
T Consensus       142 ~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~  210 (447)
T 3dw8_B          142 RYRDPTTVTTL-R----------VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR  210 (447)
T ss_dssp             ----CCCCCSC-C----------CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEE
T ss_pred             cccCcccccce-E----------eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCc
Confidence            10000000000 0          000000000112234455557899999999999999999999999999999986667


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      ...++..++..+.+|...|.+++|+|+++.+|++++.||.|++||+++++........+..|.. +.....+.+|...|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~  289 (447)
T 3dw8_B          211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED-PSNRSFFSEIISSIS  289 (447)
T ss_dssp             EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEE
T ss_pred             eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC-ccccccccccCceEE
Confidence            7777767777788999999999999997679999999999999999998764433456665322 233344566667999


Q ss_pred             EEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933          328 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  407 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw  407 (497)
                      +++|+|+|++|++++++.|++||++..++++..+.+|...+..+|..+..++++++..++|+|++++|++|+.||.|++|
T Consensus       290 ~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw  369 (447)
T 3dw8_B          290 DVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF  369 (447)
T ss_dssp             EEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred             EEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence            99999999999998779999999986588899999998777666666666777666779999999999999999999999


Q ss_pred             EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEE
Q 010933          408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA  487 (497)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~  487 (497)
                      |+.+++.  ..+.+|..+.......+.  ..      +..++....     ........++...|.+++|||++++||++
T Consensus       370 d~~~~~~--~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~la~~  434 (447)
T 3dw8_B          370 DRNTKRD--ITLEASRENNKPRTVLKP--RK------VCASGKRKK-----DEISVDSLDFNKKILHTAWHPKENIIAVA  434 (447)
T ss_dssp             ETTTCCE--EEEECCSTTCCTTCBCCC--CC------EECSSCCCT-----TCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred             EcCCCcc--eeeeecccccccccccCC--cc------ccccCCccc-----ccccccccccCCceeEEEECCCCCEEEEE
Confidence            9998744  477777766554443331  11      222222111     01122345677899999999999999999


Q ss_pred             eCCceEEEeC
Q 010933          488 NGNSLFFHYA  497 (497)
Q Consensus       488 ~~~~~~i~~~  497 (497)
                      +.+++|+|++
T Consensus       435 ~~~~~~~~~~  444 (447)
T 3dw8_B          435 TTNNLYIFQD  444 (447)
T ss_dssp             CSSCEEEEEC
T ss_pred             ecceeeeecc
Confidence            9999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-46  Score=380.17  Aligned_cols=398  Identities=14%  Similarity=0.136  Sum_probs=291.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.                     ....++.+|.           
T Consensus        56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~---------------------~~~~~~~~~~-----------  103 (611)
T 1nr0_A           56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------------ILKTTIPVFS-----------  103 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------------CEEEEEECSS-----------
T ss_pred             cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc---------------------eeeEeecccC-----------
Confidence            36999999999999999999999999999999875432                     2345678898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCC----ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH  183 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  183 (497)
                       ++|.+++|  +|++++|++++.+    +.|++||..  ......             ..+.+.+....+.++.. .+++
T Consensus       104 -~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l-------------~gh~~~v~~v~f~p~~~~~l~s  165 (611)
T 1nr0_A          104 -GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTG--TSNGNL-------------TGQARAMNSVDFKPSRPFRIIS  165 (611)
T ss_dssp             -SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTC--CBCBCC-------------CCCSSCEEEEEECSSSSCEEEE
T ss_pred             -CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCC--CCccee-------------cCCCCCceEEEECCCCCeEEEE
Confidence             88999999  7899999998865    478888843  222111             11233444555566654 3666


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                      ++.  ++.+++|+...   .+++..+ .+|...|.+++|+|+|++|++| .|++|++||+. .++....+........+|
T Consensus       166 ~s~--D~~v~lwd~~~---~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~-~g~~~~~~~~~~~~~~~h  238 (611)
T 1nr0_A          166 GSD--DNTVAIFEGPP---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSLKNVAH  238 (611)
T ss_dssp             EET--TSCEEEEETTT---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTSSSCSS
T ss_pred             EeC--CCeEEEEECCC---CeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC-CCcEeeeecccccccccc
Confidence            665  89999999763   4566666 8999999999999999999999 99999999998 454554421111112279


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc------------------------------c
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE------------------------------S  312 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~------------------------------~  312 (497)
                      ...|.+++|+|++ .+|++++.|+.|++||+++++...    .+..+..                              .
T Consensus       239 ~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~  313 (611)
T 1nr0_A          239 SGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL  313 (611)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred             CCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceee----eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence            9999999999999 999999999999999999876442    1111000                              0


Q ss_pred             cCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee-eecccccccccc-----------------
Q 010933          313 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCD-----------------  373 (497)
Q Consensus       313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~-----------------  373 (497)
                      ......+.+|...|++++|+|+|++|++++ |+.|++||+.+ ++....+ .+|...+..++.                 
T Consensus       314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~  392 (611)
T 1nr0_A          314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV  392 (611)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred             CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence            001123468999999999999999999986 59999999986 4443332 222211100000                 


Q ss_pred             --c-----------------------CCCC------------------------CccceeEEEEcCCCCEEEEEeCCCcE
Q 010933          374 --L-----------------------YNND------------------------SIFDKFECSVSGDGLHFATGSYSNLL  404 (497)
Q Consensus       374 --~-----------------------~~~~------------------------~~~~~~~~~~s~~~~~l~s~~~dg~i  404 (497)
                        .                       ...+                        ....+.+++|+|||++||+|+.|+.|
T Consensus       393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v  472 (611)
T 1nr0_A          393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  472 (611)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence              0                       0000                        00124689999999999999999999


Q ss_pred             EEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC---CCCccc--ccccCCCeEEEEEe
Q 010933          405 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS---SGHHEL--SYNLSSKLLHLAWH  478 (497)
Q Consensus       405 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~---~~~~~~--~~~~~~~i~~l~~~  478 (497)
                      ++||+.++........+|...|++++|+|  ++++     |++++.|+. ++|..   .+....  ...|...|.+++|+
T Consensus       473 ~lwd~~~~~~~~~~~~~h~~~v~~v~fsp--dg~~-----las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs  545 (611)
T 1nr0_A          473 HVYKLSGASVSEVKTIVHPAEITSVAFSN--NGAF-----LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  545 (611)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECT--TSSE-----EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             EEEEccCCceeeeeccCCCCceEEEEECC--CCCE-----EEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence            99999876432223378999999999999  7777     999999999 99932   222222  23499999999999


Q ss_pred             cCCCEEEEEe-CCceEEEe
Q 010933          479 PTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       479 p~~~~la~~~-~~~~~i~~  496 (497)
                      |||++||+|+ ++.+++|+
T Consensus       546 pdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          546 PDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEECCCcEEEEE
Confidence            9999999999 55599997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.8e-44  Score=359.20  Aligned_cols=354  Identities=19%  Similarity=0.256  Sum_probs=292.4

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|.+++|+|+|++|++|+.|+.|++||...                        +.+..+.+|.            
T Consensus       219 ~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~------------------------~~~~~~~~~~------------  262 (577)
T 2ymu_A          219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------------------------QLLQTLTGHS------------  262 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS------------------------CEEEEECCCS------------
T ss_pred             cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC------------------------CEEEEEecCC------------
Confidence            5889999999999999999999999999999643                        3356778898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|+++.+++++.|+.|++|+........+ .             .+.+.+....+.++...++.++.  +
T Consensus       263 ~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~~~~~-~-------------~h~~~v~~~~~~~~~~~l~t~~~--d  324 (577)
T 2ymu_A          263 SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQLLQTL-T-------------GHSSSVWGVAFSPDGQTIASASD--D  324 (577)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEE-C-------------CCSSCEEEEEECTTSSEEEEEET--T
T ss_pred             CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcEEEEE-e-------------cCCCCeEEEEECCCCCEEEEEeC--C
Confidence            88999999  68999999999999999999754332221 1             11233444455666777776664  8


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                      +.+++|+....    .+..+ .+|...+.+++|+|+++.+++| .|+.|++||..  ++....       +.+|...|.+
T Consensus       325 ~~i~~w~~~~~----~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~~-------~~~~~~~v~~  390 (577)
T 2ymu_A          325 KTVKLWNRNGQ----HLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHSSSVRG  390 (577)
T ss_dssp             SCEEEEETTSC----EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEEE-------EECCSSCEEE
T ss_pred             CeEEEEeCCCC----eeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEEE-------ecCCCCCeEE
Confidence            89999997643    44444 7899999999999999999999 99999999965  344443       6689999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ ++|++++.|+.|++||.. ++..    ..+             .+|...|.+++|+|++++|++++ |+.|+
T Consensus       391 ~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~----~~~-------------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          391 VAFSPDG-QTIASASDDKTVKLWNRN-GQLL----QTL-------------TGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             EEECTTS-SCEEEEETTSEEEEECTT-CCEE----EEE-------------ECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEECCCC-CEEEEEeCCCEEEEEeCC-CCEE----EEe-------------cCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence            9999999 999999999999999964 3322    333             34568899999999999999985 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||+.  ++.+..+.+|...+               ++++|+|++++|++++.|+.|++||.. + .....+.+|..+|+
T Consensus       452 ~w~~~--~~~~~~~~~~~~~v---------------~~~~~spd~~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~  512 (577)
T 2ymu_A          452 LWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVR  512 (577)
T ss_dssp             EEETT--SCEEEEEECCSSCE---------------EEEEECTTSCEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEE
T ss_pred             EEECC--CCEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEE
Confidence            99974  77888888888764               789999999999999999999999964 4 44588999999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      +++|+|  ++++     |++++.|+. ++| ..++....+.+|...|++++|+|||++|++++.| .+++|+
T Consensus       513 ~l~~s~--dg~~-----l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          513 GVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECT--TSSC-----EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcC--CCCE-----EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999  6777     999999999 999 4455566678999999999999999999999854 599995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.5e-44  Score=360.59  Aligned_cols=383  Identities=11%  Similarity=0.111  Sum_probs=282.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .+.+.+.+++|+|||++||+++ ++.|+||++.+++.                       ...+.+|.            
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~-----------------------~~~~~~h~------------   59 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS------------   59 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS------------
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc-----------------------CeEecCCC------------
Confidence            3567889999999999999988 56999999976543                       66788999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|++++|  +|++++|++++.|++|+|||+.+++......           ...+.+.+....+.++...++.++...+
T Consensus        60 ~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~-----------~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           60 HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTT-----------IPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEE-----------EECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEe-----------ecccCCceEEEEECCCCCEEEEEECCCC
Confidence            88999999  7899999999999999999997654321111           1112345666667777777776654322


Q ss_pred             --cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          190 --MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       190 --~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                        +.+++|+..     ++...+ .+|...|.+++|+|++. .|++| .|++|++||.. ..+....       +.+|...
T Consensus       127 ~~~~v~~wd~~-----~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~~-------l~~H~~~  192 (611)
T 1nr0_A          127 RFGHVFLFDTG-----TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKST-------FGEHTKF  192 (611)
T ss_dssp             CSEEEEETTTC-----CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEE-------ECCCSSC
T ss_pred             ceeEEEEeeCC-----CCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEeee-------eccccCc
Confidence              467788743     344444 89999999999999987 58888 99999999988 5555554       7889999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      |.+++|+|++ .+|++++.|+.|++||+++++..    ..+..      ......+|...|.+++|+|+|++|++++ |+
T Consensus       193 V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~----~~~~~------~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~  261 (611)
T 1nr0_A          193 VHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASASADK  261 (611)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCC-CEEEEEECCCcEEEEECCCCcEe----eeecc------ccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence            9999999999 99999999999999999887644    22211      0001125788999999999999999986 59


Q ss_pred             eEEEEecCCCCceeeeeeecccccc------------------------------cccccCCCCCccceeEEEEcCCCCE
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRP------------------------------KLCDLYNNDSIFDKFECSVSGDGLH  394 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~s~~~~~  394 (497)
                      .|++||+++ ++++..+..+.....                              ....+...  ...+++++|+|++++
T Consensus       262 ~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh--~~~v~~l~~spdg~~  338 (611)
T 1nr0_A          262 TIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH--NKAITALSSSADGKT  338 (611)
T ss_dssp             EEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred             eEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC--CCCEEEEEEeCCCCE
Confidence            999999986 666665543211000                              00000000  112479999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCcceEEEecc----------------------------------------------------
Q 010933          395 FATGSYSNLLRIFSHGVGSAGGITVEAG----------------------------------------------------  422 (497)
Q Consensus       395 l~s~~~dg~i~vw~~~~~~~~~~~~~~~----------------------------------------------------  422 (497)
                      |++++.|+.|++||+.++........+|                                                    
T Consensus       339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~  418 (611)
T 1nr0_A          339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA  418 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence            9999999999999998763321100112                                                    


Q ss_pred             -----------------------------CcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCC-c--ccccccC
Q 010933          423 -----------------------------KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-H--ELSYNLS  469 (497)
Q Consensus       423 -----------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~-~--~~~~~~~  469 (497)
                                                   ...+.+++|+|  ++++     +++|+.|+. ++|..... .  ....+|.
T Consensus       419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp--dg~~-----lasgs~D~~v~lwd~~~~~~~~~~~~~h~  491 (611)
T 1nr0_A          419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN--DKQF-----VAVGGQDSKVHVYKLSGASVSEVKTIVHP  491 (611)
T ss_dssp             ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT--TSCE-----EEEEETTSEEEEEEEETTEEEEEEEEECS
T ss_pred             EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC--CCCE-----EEEeCCCCeEEEEEccCCceeeeeccCCC
Confidence                                         23345666666  5666     999999999 99943221 1  1226789


Q ss_pred             CCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          470 SKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       470 ~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      ..|++++|+|+|++||+++ ++.+++|+
T Consensus       492 ~~v~~v~fspdg~~las~s~d~~v~~w~  519 (611)
T 1nr0_A          492 AEITSVAFSNNGAFLVATDQSRKVIPYS  519 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence            9999999999999999999 55599986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.2e-43  Score=355.98  Aligned_cols=367  Identities=19%  Similarity=0.250  Sum_probs=286.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|++.|+|++|||||++||+|+.|+.|+|||.+ +                       +.+.++.+|+           
T Consensus        13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~-----------------------~~~~~l~gh~-----------   57 (577)
T 2ymu_A           13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-----------------------QLLQTLTGHS-----------   57 (577)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S-----------------------CEEEEEECCS-----------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-C-----------------------CEEEEEeCCC-----------
Confidence            3699999999999999999999999999999953 3                       3367889999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc----------------------
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE----------------------  166 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  166 (497)
                       +.|++++|  +|++++|++++.|++|++||..... ......+ ...+..+.+.+..                      
T Consensus        58 -~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~~-~~~~~~~-~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~  132 (577)
T 2ymu_A           58 -SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL  132 (577)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCE-EEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE
T ss_pred             -CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCE-EEEEECC-CCCEEEEEECCCCCEEEEEcCCCceeeccccccee
Confidence             89999999  7899999999999999999975432 2222111 1112222211110                      


Q ss_pred             ------------------------------------------------cCccccCCCCCcccccccccccCcceEEEeec
Q 010933          167 ------------------------------------------------KNFMNEHNPPSFAHGYHLEWTENMATKIANVG  198 (497)
Q Consensus       167 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (497)
                                                                      +.+......++..+++.++  .++.+++|+..
T Consensus       133 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~~w~~~  210 (577)
T 2ymu_A          133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--DDKTVKLWNRN  210 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTT
T ss_pred             eeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEc--CCCEEEEEeCC
Confidence                                                            0011111222333333333  36789999864


Q ss_pred             CCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCc
Q 010933          199 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  277 (497)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  277 (497)
                      .    +.+..+ .+|...|.+++|+|+++.|+++ .|+.|++||..  ++....       +.+|...|.+++|+|++ .
T Consensus       211 ~----~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~-------~~~~~~~v~~v~~~~d~-~  275 (577)
T 2ymu_A          211 G----QLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHSSSVNGVAFRPDG-Q  275 (577)
T ss_dssp             S----CEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEE-------ECCCSSCEEEEEECTTS-S
T ss_pred             C----cEEEEE-ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE-------EecCCCCEEEEEEcCCC-C
Confidence            3    455555 7899999999999999999999 99999999976  344443       67899999999999999 9


Q ss_pred             EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCc
Q 010933          278 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  356 (497)
Q Consensus       278 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~  356 (497)
                      .|++++.|+.|++||... +..    ..+             .+|...|.+++|+|++++|++++ ++.|++||+.  +.
T Consensus       276 ~l~~~~~d~~i~~w~~~~-~~~----~~~-------------~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~--~~  335 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNG-QLL----QTL-------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQ  335 (577)
T ss_dssp             EEEEEETTSCEEEEETTS-CEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SC
T ss_pred             EEEEEeCCCEEEEEeCCC-cEE----EEE-------------ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--CC
Confidence            999999999999999653 222    233             34568899999999999999986 4999999986  56


Q ss_pred             eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCC
Q 010933          357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  436 (497)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  436 (497)
                      .+..+.+|...+               ++++|+|++++|++++.||.|++|+.. + .....+.+|..++++++|+|  +
T Consensus       336 ~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~--d  396 (577)
T 2ymu_A          336 HLQTLTGHSSSV---------------WGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSP--D  396 (577)
T ss_dssp             EEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECT--T
T ss_pred             eeEEEeCCCCCE---------------EEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECC--C
Confidence            677777777654               689999999999999999999999964 3 44588999999999999998  6


Q ss_pred             cccccccceeEeeccCc-eecC-CCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          437 ARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       437 ~~~~~~~~l~~~~~d~~-~iw~-~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      ++.     +++++.|+. ++|. .++......+|...|++++|+|++++||+++.| .+++|+
T Consensus       397 g~~-----l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~  454 (577)
T 2ymu_A          397 GQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN  454 (577)
T ss_dssp             SSC-----EEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCE-----EEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            777     999999999 9994 344555677899999999999999999999955 488886

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-43  Score=338.25  Aligned_cols=280  Identities=18%  Similarity=0.256  Sum_probs=245.9

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.++|++++|+|++++||+|+.||.|+|||+.+++.                       ...+.+|.           
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~-----------  150 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT-----------  150 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS-----------
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC-----------
Confidence            36999999999999999999999999999999988743                       67788999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|.+++|  ++++.+|++|+.|++|++||+.++++.                                          
T Consensus       151 -~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~------------------------------------------  185 (410)
T 1vyh_C          151 -DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECI------------------------------------------  185 (410)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEE------------------------------------------
T ss_pred             -CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCcee------------------------------------------
Confidence             88999999  688999999999999999999765532                                          


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        ..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .+.+...       +.+|...|.
T Consensus       186 ------------------~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~-------~~~h~~~v~  238 (410)
T 1vyh_C          186 ------------------RTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKT-------FTGHREWVR  238 (410)
T ss_dssp             ------------------ECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCSSCEE
T ss_pred             ------------------EEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EeCCCccEE
Confidence                              222 7899999999999999999999 99999999999 5555554       678999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-------------
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-------------  334 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------------  334 (497)
                      ++.++|++ .+|++++.|+.|++||+++++..    ..+             .+|...|.+++|+|+             
T Consensus       239 ~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          239 MVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AEL-------------REHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             EEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eEe-------------cCCCceEEEEEEcCcccccchhhhcccc
Confidence            99999999 99999999999999999887543    233             335678999999996             


Q ss_pred             -------CCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          335 -------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       335 -------g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                             |.+|++|+ |+.|++||+++ +.++..+.+|...+               ++++|+|++++|++|+.||.|++
T Consensus       301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~~i~v  364 (410)
T 1vyh_C          301 TKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDKTLRV  364 (410)
T ss_dssp             -------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTTEEEE
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCCeEEE
Confidence                   67899886 59999999987 88999999998765               68999999999999999999999


Q ss_pred             EEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       407 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ||+.+++.+ ..+.+|...|.+++|+|  ++..     +++|+.|+. ++|
T Consensus       365 wd~~~~~~~-~~~~~h~~~v~~l~~~~--~~~~-----l~sgs~D~~i~vW  407 (410)
T 1vyh_C          365 WDYKNKRCM-KTLNAHEHFVTSLDFHK--TAPY-----VVTGSVDQTVKVW  407 (410)
T ss_dssp             ECCTTSCCC-EEEECCSSCEEEEEECS--SSSC-----EEEEETTSEEEEE
T ss_pred             EECCCCceE-EEEcCCCCcEEEEEEcC--CCCE-----EEEEeCCCcEEEE
Confidence            999887554 88999999999999999  5556     999999999 999

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.9e-43  Score=321.59  Aligned_cols=284  Identities=18%  Similarity=0.201  Sum_probs=238.9

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.||.|+|||+++++                       .+..+..|.            
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----------------------~~~~~~~~~------------   55 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----------------------EVRSIQVTE------------   55 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS------------
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eeEEeeccC------------
Confidence            489999999999999999999999999999998764                       367788888            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+|.+++|  ++++++|++++.|++|++||+.+++..                                           
T Consensus        56 ~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~~-------------------------------------------   90 (304)
T 2ynn_A           56 TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKV-------------------------------------------   90 (304)
T ss_dssp             SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEE-------------------------------------------
T ss_pred             CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcEE-------------------------------------------
Confidence            88999999  578899999999999999999876632                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                       ..+ .+|...|.+++|+|++++|++| .|++|++||++........       +.+|...|.+
T Consensus        91 -----------------~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-------~~~h~~~v~~  145 (304)
T 2ynn_A           91 -----------------VDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMC  145 (304)
T ss_dssp             -----------------EEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-------ECCCCSCEEE
T ss_pred             -----------------EEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-------hcccCCcEEE
Confidence                             222 7899999999999999999999 9999999999854454444       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEe-cCe
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMN  345 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~-~~~  345 (497)
                      ++|+|.+..+|++++.|+.|++||++++...    ..+.            .+|...+..+.|+|  ++.+|++|+ |+.
T Consensus       146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~  209 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLT------------TGQERGVNYVDYYPLPDKPYMITASDDLT  209 (304)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEEE------------CCCTTCEEEEEECCSTTCCEEEEEETTSE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCcc----ceec------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCe
Confidence            9999943389999999999999999876532    1111            12346788899987  678999986 599


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      |++||+++ ++++..+.+|...+               ..++|+|++++|++|+.||.|++||+.+++. ...+..|...
T Consensus       210 i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~~~  272 (304)
T 2ynn_A          210 IKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKTLNVGLER  272 (304)
T ss_dssp             EEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCSSSS
T ss_pred             EEEEeCCC-CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCCce-eeeccCCCcc
Confidence            99999997 88999999998765               6899999999999999999999999998854 4889999999


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCceec
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQAHEN  456 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw  456 (497)
                      ++++++.|.....+     +++|+.++..+|
T Consensus       273 ~~~~~~~~~~~~~~-----~asg~~~g~~~~  298 (304)
T 2ynn_A          273 SWCIATHPTGRKNY-----IASGFDNGFTVL  298 (304)
T ss_dssp             EEEEEECTTCGGGC-----EEEEETTEEEEE
T ss_pred             EEEEEECCCCCceE-----EEEecCCceEEE
Confidence            99999988522233     788877776666

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.9e-43  Score=324.06  Aligned_cols=282  Identities=15%  Similarity=0.219  Sum_probs=241.0

Q ss_pred             ccCCcceEEEEEcCC----CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~----g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      .+|.+.|++++|+|+    +++||+|+.|++|+||++..++.                     .....+.+|.       
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~-------   80 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ-------   80 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS-------
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC-------
Confidence            369999999999985    67999999999999999987532                     3455688999       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           ..|.+++|  ++++.++++++.|++|++||+.+++...                                     
T Consensus        81 -----~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~-------------------------------------  116 (321)
T 3ow8_A           81 -----LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIK-------------------------------------  116 (321)
T ss_dssp             -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred             -----CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEE-------------------------------------
Confidence                 88999999  6888999999999999999998776332                                     


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                             .+ ..|...+.+++|+|+++.|++| .|+.|++|+++.... ...       +..|.
T Consensus       117 -----------------------~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~-------~~~~~  164 (321)
T 3ow8_A          117 -----------------------SI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYS-------LDTRG  164 (321)
T ss_dssp             -----------------------EE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEE-------EECSS
T ss_pred             -----------------------EE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEE-------ecCCC
Confidence                                   22 5677788999999999999999 999999999994443 332       56788


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  343 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  343 (497)
                      ..|.+++|+|++ ++|++++.||.|++||+++++..    ..+.             +|...|.+++|+|++++|++|+.
T Consensus       165 ~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~~~-------------~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          165 KFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HTLE-------------GHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCCCEEEECTTSCEEEEECT
T ss_pred             ceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEc-------------ccCCceeEEEEcCCCCEEEEEcC
Confidence            899999999999 99999999999999999987644    3333             35678999999999999999864


Q ss_pred             -CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          344 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       344 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                       +.|++||++. ++....+.+|...+               .+++|+|++++|++++.|+.|++||+.+++. ...+.+|
T Consensus       227 dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~h  289 (321)
T 3ow8_A          227 DGYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-VHTFFDH  289 (321)
T ss_dssp             TSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCC
T ss_pred             CCeEEEEECCC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCCEE-EEEEcCC
Confidence             9999999986 78888899888765               6899999999999999999999999998754 4888999


Q ss_pred             CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ...|.+++|++  ++..     |++++.|+. ++|
T Consensus       290 ~~~v~~v~~s~--~g~~-----l~s~~~d~~i~vw  317 (321)
T 3ow8_A          290 QDQVWGVKYNG--NGSK-----IVSVGDDQEIHIY  317 (321)
T ss_dssp             SSCEEEEEECT--TSSE-----EEEEETTCCEEEE
T ss_pred             CCcEEEEEECC--CCCE-----EEEEeCCCeEEEE
Confidence            99999999998  6666     999999999 999

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.8e-43  Score=328.44  Aligned_cols=291  Identities=13%  Similarity=0.179  Sum_probs=216.7

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeec------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  101 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  101 (497)
                      +..|...|++++|||||++||+|+.      |+.|++|+..++..                   .........+|.    
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-------------------~~~~~~~~~~~~----   94 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-------------------NESLCTAGVQTE----   94 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC----------------------CGGGCSEEEECS----
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-------------------ceeEecccCCCC----
Confidence            3469999999999999999999997      77899998776532                   223334455677    


Q ss_pred             cccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933          102 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  181 (497)
Q Consensus       102 ~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (497)
                              ..|.+++|+  |++ .+++++.||+|++||+.+++.....                                
T Consensus        95 --------~~V~~~~~s--~d~-~~l~~s~dg~v~lWd~~~~~~~~~~--------------------------------  131 (357)
T 4g56_B           95 --------AGVTDVAWV--SEK-GILVASDSGAVELWEILEKESLLVN--------------------------------  131 (357)
T ss_dssp             --------SCEEEEEEE--TTT-EEEEEETTSCEEEC--------CCC--------------------------------
T ss_pred             --------CCEEEEEEc--CCC-CEEEEECCCEEEEeeccccceeEEE--------------------------------
Confidence                    889999994  665 5677889999999999887633211                                


Q ss_pred             cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                               .....+|...|.+++|+|+++.|++| .|+.|++||++ .++....       +.
T Consensus       132 -------------------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~-------~~  178 (357)
T 4g56_B          132 -------------------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKS-------YN  178 (357)
T ss_dssp             -------------------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEE-------EC
T ss_pred             -------------------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------Ec
Confidence                                     00115899999999999999999999 99999999999 5555554       67


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLL  339 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~  339 (497)
                      +|...|.+++|+|++..++++++.|+.|++||+++++..    ..+..           ..|...+.+++|+|++ .+|+
T Consensus       179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~-----------~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF-----------CASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC-----------TTCCSCEEEEEECTTSTTEEE
T ss_pred             CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeee-----------ccccccccchhhhhcccceEE
Confidence            899999999999998568999999999999999987654    22221           2234678999999975 6788


Q ss_pred             EEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceE
Q 010933          340 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGI  417 (497)
Q Consensus       340 ~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~  417 (497)
                      +|+ ++.|++||+++ ++++..+.+|...+               ++++|+|++ ++|++|+.|++|+|||+++++.  .
T Consensus       244 ~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--~  305 (357)
T 4g56_B          244 CGDETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFSEV--F  305 (357)
T ss_dssp             EEESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSCEE--E
T ss_pred             EeecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--e
Confidence            875 59999999986 88889999888764               799999987 5899999999999999988733  2


Q ss_pred             EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ...+|.+.|++++|+|. ++..     |++++.|+. ++|
T Consensus       306 ~~~~H~~~V~~vafsP~-d~~~-----l~s~s~Dg~v~iW  339 (357)
T 4g56_B          306 RDLSHRDFVTGVAWSPL-DHSK-----FTTVGWDHKVLHH  339 (357)
T ss_dssp             EECCCSSCEEEEEECSS-STTE-----EEEEETTSCEEEE
T ss_pred             EECCCCCCEEEEEEeCC-CCCE-----EEEEcCCCeEEEE
Confidence            33356666666555553 3333     555555555 555

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.2e-41  Score=317.47  Aligned_cols=284  Identities=13%  Similarity=0.191  Sum_probs=237.8

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.||.|+|||..+++.                       +..+..|.            
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~------------   97 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS------------   97 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS------------
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC------------
Confidence            6999999999999999999999999999999887643                       56677888            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|++.+|++++.|+.|++|++.++....                                          
T Consensus        98 ~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~------------------------------------------  133 (340)
T 1got_B           98 SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNV------------------------------------------  133 (340)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSC------------------------------------------
T ss_pred             ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcc------------------------------------------
Confidence            88999999  6899999999999999999987643110                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                    .....+ .+|...|.++.|++++. ++++ .|+.|++||++ .++....       +.+|...|.+
T Consensus       134 --------------~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~-~~~~~~~-------~~~h~~~v~~  189 (340)
T 1got_B          134 --------------RVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE-TGQQTTT-------FTGHTGDVMS  189 (340)
T ss_dssp             --------------EEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT-TTEEEEE-------ECCCSSCEEE
T ss_pred             --------------eeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECC-CCcEEEE-------EcCCCCceEE
Confidence                          112222 68999999999998876 6666 99999999998 5555554       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ .+|++++.|+.|++||++++...    ..+.             +|...|++++|+|++++|++|+ |+.|+
T Consensus       190 ~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~~~~-------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~  251 (340)
T 1got_B          190 LSLAPDT-RLFVSGACDASAKLWDVREGMCR----QTFT-------------GHESDINAICFFPNGNAFATGSDDATCR  251 (340)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEETTTCSEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEECCCC-CEEEEEeCCCcEEEEECCCCeeE----EEEc-------------CCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence            9999999 99999999999999999987543    3333             4568899999999999999986 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||++. ++.+..+..+...             ..+++++|+|++++|++|+.||.|++||+.+++. ...+.+|..+|.
T Consensus       252 iwd~~~-~~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~~~~h~~~v~  316 (340)
T 1got_B          252 LFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVS  316 (340)
T ss_dssp             EEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEE
T ss_pred             EEECCC-CcEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-eeEeecCCCcEE
Confidence            999986 6666655432211             1236899999999999999999999999988754 478999999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eec
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +++|+|  ++..     |++|+.|+. ++|
T Consensus       317 ~~~~s~--dg~~-----l~s~s~D~~i~iW  339 (340)
T 1got_B          317 CLGVTD--DGMA-----VATGSWDSFLKIW  339 (340)
T ss_dssp             EEEECT--TSSC-----EEEEETTSCEEEE
T ss_pred             EEEEcC--CCCE-----EEEEcCCccEEec
Confidence            999998  6666     999999998 998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=318.49  Aligned_cols=299  Identities=13%  Similarity=0.118  Sum_probs=229.1

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .+..|...|.+++|+|||++|++++ |+++++||.......   ..         ...+..........|+         
T Consensus        25 ~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~---~~---------~~~~~~~~~~~~~~~~---------   82 (344)
T 4gqb_B           25 APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK---DP---------CAAPNEGFCSAGVQTE---------   82 (344)
T ss_dssp             SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES---SG---------GGTTCGGGCSEEEEES---------
T ss_pred             CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec---cc---------cccCCcceeeeeeccC---------
Confidence            3445788999999999999999887 778888875321100   00         0000001111112233         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         ..|.+++|+  ++ ..|++++.||+|++||+.+++....                                      
T Consensus        83 ---~~v~~~~~s--~d-~~l~~~s~dg~v~lWd~~~~~~~~~--------------------------------------  118 (344)
T 4gqb_B           83 ---AGVADLTWV--GE-RGILVASDSGAVELWELDENETLIV--------------------------------------  118 (344)
T ss_dssp             ---SCEEEEEEE--TT-TEEEEEETTSEEEEEEECTTSSCEE--------------------------------------
T ss_pred             ---CCEEEEEEe--CC-CeEEEEECCCEEEEEeccCCCceeE--------------------------------------
Confidence               789999994  55 5789999999999999988764321                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                         .+....+|...|++++|+|+|++|++| .|+.|++||++ .++.+..       +.+|...
T Consensus       119 -------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~-------~~~h~~~  171 (344)
T 4gqb_B          119 -------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSS-------YRAHAAQ  171 (344)
T ss_dssp             -------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSC
T ss_pred             -------------------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EcCcCCc
Confidence                               111125899999999999999999999 99999999999 5666655       7899999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe-c
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-Y  343 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~  343 (497)
                      |.+++|+|++..+|++++.|+.|++||+++++..    ..+..           ..|...+.+++|+|+ +++|++|+ |
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEETT
T ss_pred             eEEEEecCCCCCceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEeccC
Confidence            9999999998568999999999999999988654    22222           122356899999995 56788875 5


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                      +.|++||+++ ++++..+.+|...+               ++++|+|++ ++|++|+.|++|+|||+.+++  ...+.+|
T Consensus       237 g~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H  298 (344)
T 4gqb_B          237 GTVSLVDTKS-TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--LFRSQAH  298 (344)
T ss_dssp             SEEEEEESCC---CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCCE--EEEECCC
T ss_pred             CcEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCCc--EEEEcCC
Confidence            9999999997 88999999998865               799999998 589999999999999998874  3568999


Q ss_pred             CcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      .+.|++++|+|. ...+     |++++.|+. ++|.
T Consensus       299 ~~~V~~v~~sp~-~~~l-----las~s~D~~v~~w~  328 (344)
T 4gqb_B          299 RDFVRDATWSPL-NHSL-----LTTVGWDHQVVHHV  328 (344)
T ss_dssp             SSCEEEEEECSS-STTE-----EEEEETTSCEEEEE
T ss_pred             CCCEEEEEEeCC-CCeE-----EEEEcCCCeEEEEE
Confidence            999999999994 2234     789999999 9993

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-40  Score=313.27  Aligned_cols=288  Identities=14%  Similarity=0.193  Sum_probs=238.6

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|+|++|+|+|++||+|+.||.|+|||..+++.                       ...+..|.           
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~-----------  106 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC-----------  106 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS-----------
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC-----------
Confidence            36999999999999999999999999999999877643                       45566777           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  +|++.++++++.|+.+++|++........                                        
T Consensus       107 -~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~----------------------------------------  143 (354)
T 2pbi_B          107 -TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENM----------------------------------------  143 (354)
T ss_dssp             -SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCS----------------------------------------
T ss_pred             -CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccc----------------------------------------
Confidence             78999999  68999999999999999999865431110                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                    ......+ .+|...|.+++|+|++..|+++ .|++|++||++ .++....       +.+|...|.
T Consensus       144 --------------~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~-------~~~h~~~v~  200 (354)
T 2pbi_B          144 --------------AAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQS-------FHGHGADVL  200 (354)
T ss_dssp             --------------GGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCSSCEE
T ss_pred             --------------cccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEE-------EcCCCCCeE
Confidence                          0111222 6899999999999999999999 99999999999 5555554       678999999


Q ss_pred             EEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          268 SAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       268 ~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      +++|+|+  + ++|++++.||.|++||+++++..    ..+.             +|...|++++|+|++.+|++++ |+
T Consensus       201 ~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~~~-------------~h~~~v~~v~~~p~~~~l~s~s~D~  262 (354)
T 2pbi_B          201 CLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QAFE-------------THESDVNSVRYYPSGDAFASGSDDA  262 (354)
T ss_dssp             EEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EEec-------------CCCCCeEEEEEeCCCCEEEEEeCCC
Confidence            9999874  5 79999999999999999987644    3333             3568899999999999999986 59


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      .|++||++. .+.+..+..+...             ..+.+++|+|++++|++|+.|+.|++||+.+++.+ ..+.+|..
T Consensus       263 ~v~lwd~~~-~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~  327 (354)
T 2pbi_B          263 TCRLYDLRA-DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV-SILFGHEN  327 (354)
T ss_dssp             CEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-EEECCCSS
T ss_pred             eEEEEECCC-CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE-EEEECCCC
Confidence            999999986 6666555443321             12368999999999999999999999999888554 78899999


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +|.+++|+|  ++.+     |++|+.|+. ++|
T Consensus       328 ~v~~l~~sp--dg~~-----l~sgs~D~~v~vW  353 (354)
T 2pbi_B          328 RVSTLRVSP--DGTA-----FCSGSWDHTLRVW  353 (354)
T ss_dssp             CEEEEEECT--TSSC-----EEEEETTSEEEEE
T ss_pred             cEEEEEECC--CCCE-----EEEEcCCCCEEec
Confidence            999999999  6777     999999999 988

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-40  Score=320.61  Aligned_cols=283  Identities=15%  Similarity=0.242  Sum_probs=244.5

Q ss_pred             ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      ....+.+|.            ++|++++|  +|++.+|++++.|++|++||+.+++..                      
T Consensus       100 ~~~~l~gh~------------~~V~~~~~--~p~~~~l~s~s~Dg~i~vwd~~~~~~~----------------------  143 (410)
T 1vyh_C          100 EKYALSGHR------------SPVTRVIF--HPVFSVMVSASEDATIKVWDYETGDFE----------------------  143 (410)
T ss_dssp             CSCEEECCS------------SCEEEEEE--CSSSSEEEEEESSSCEEEEETTTCCCC----------------------
T ss_pred             ceEeecccC------------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE----------------------
Confidence            345677888            99999999  688999999999999999999876632                      


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  247 (497)
                                                            ..+ .+|...|.+++|+|++++|++| .|+.|++||+. ..+
T Consensus       144 --------------------------------------~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~  183 (410)
T 1vyh_C          144 --------------------------------------RTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFE  183 (410)
T ss_dssp             --------------------------------------EEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSC
T ss_pred             --------------------------------------EEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCc
Confidence                                                  222 7899999999999999999999 99999999998 555


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      ....       +.+|...|.+++|+|++ .+|++++.|+.|++||++++...    ..+.             +|...+.
T Consensus       184 ~~~~-------~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----~~~~-------------~h~~~v~  238 (410)
T 1vyh_C          184 CIRT-------MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTFT-------------GHREWVR  238 (410)
T ss_dssp             EEEC-------CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEE
T ss_pred             eeEE-------EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEe-------------CCCccEE
Confidence            5543       78899999999999999 99999999999999999987644    3333             3567899


Q ss_pred             EEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC---------------
Q 010933          328 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---------------  391 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------------  391 (497)
                      ++.++|++.+|++|+ |+.|++||+.+ +++...+.+|...+               .+++|+|+               
T Consensus       239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          239 MVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVV---------------ECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECCSCGGGGGGGCCSCC--
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCceE---------------EEEEEcCcccccchhhhcccccc
Confidence            999999999999986 59999999986 78888888888764               68999986               


Q ss_pred             -----CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcc
Q 010933          392 -----GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHE  463 (497)
Q Consensus       392 -----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~  463 (497)
                           +.+|++|+.|+.|++||+.++.. ...+.+|...|++++|++  ++.+     +++|+.|+. ++|  ..++...
T Consensus       303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~--~g~~-----l~s~s~D~~i~vwd~~~~~~~~  374 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHS--GGKF-----ILSCADDKTLRVWDYKNKRCMK  374 (410)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECS--SSSC-----EEEEETTTEEEEECCTTSCCCE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcC--CCCE-----EEEEeCCCeEEEEECCCCceEE
Confidence                 67899999999999999998854 488999999999999998  6666     999999999 999  3445566


Q ss_pred             cccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          464 LSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       464 ~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      .+.+|...|++++|+|++++||+|+.| .+.+|+
T Consensus       375 ~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            677899999999999999999999954 599996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.3e-40  Score=304.06  Aligned_cols=283  Identities=22%  Similarity=0.394  Sum_probs=230.9

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.||.|++|+..+++.                       ...+.+|.            
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-----------------------~~~~~~h~------------   65 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----------------------EKTISGHK------------   65 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS------------
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-----------------------chhhccCC------------
Confidence            5999999999999999999999999999999877643                       56678898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|++++|++++.|+.|++||+.+++..                                           
T Consensus        66 ~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~-------------------------------------------  100 (312)
T 4ery_A           66 LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL-------------------------------------------  100 (312)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEE-------------------------------------------
T ss_pred             CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEE-------------------------------------------
Confidence            88999999  689999999999999999999876532                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                       ..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .++....       +..|...|.+
T Consensus       101 -----------------~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-------~~~~~~~v~~  154 (312)
T 4ery_A          101 -----------------KTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKT-------LPAHSDPVSA  154 (312)
T ss_dssp             -----------------EEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCSSCEEE
T ss_pred             -----------------EEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEE-------ecCCCCcEEE
Confidence                             222 6889999999999999999999 99999999998 4555544       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ .+|++++.||.|++||+++++..    ..+..            .+...+..++|+|++++|++++ ++.|+
T Consensus       155 ~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          155 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLID------------DDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC------------SSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             EEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEec------------cCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            9999999 99999999999999999987643    22211            1235789999999999999986 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  426 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  426 (497)
                      +||+++ ++.+..+.+|......             ....++ +++++|++|+.||.|++||+.+++.+ ..+.+     
T Consensus       218 iwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~-----  277 (312)
T 4ery_A          218 LWDYSK-GKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQG-----  277 (312)
T ss_dssp             EEETTT-TEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCEE-EEECC-----
T ss_pred             EEECCC-CcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchhh-hhhhc-----
Confidence            999986 8888888887654311             123444 67899999999999999999887432 34433     


Q ss_pred             eeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEe---CCceEEEe
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHY  496 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~---~~~~~i~~  496 (497)
                                                               |...|.+++|+|++++||+++   ++.+.+|.
T Consensus       278 -----------------------------------------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          278 -----------------------------------------HTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             -----------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             -----------------------------------------cCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence                                                     344677788888888888776   45588886

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-40  Score=307.64  Aligned_cols=286  Identities=16%  Similarity=0.189  Sum_probs=238.9

Q ss_pred             cccccccCcccccccccccccceeEEEEEec--CCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s--~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      .+.+++|+            +.|++++|+|.  +++.+|++|+.|++|++|++..+...                     
T Consensus        25 ~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------   71 (321)
T 3ow8_A           25 FKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------   71 (321)
T ss_dssp             EEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------
T ss_pred             eeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------
Confidence            45567898            99999999642  35679999999999999998765421                     


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                           +... +.+|...|.+++|++++..++++ .|+.|++||+. .+
T Consensus        72 -------------------------------------~~~~-l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~-~~  112 (321)
T 3ow8_A           72 -------------------------------------LQWS-LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NG  112 (321)
T ss_dssp             -------------------------------------EEEE-ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TT
T ss_pred             -------------------------------------eeee-eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC-CC
Confidence                                                 1112 27999999999999999999999 99999999999 55


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      +....       +..+...+.+++|+|++ .+|++++.|+.|++||+++++..    ..+.             .|...+
T Consensus       113 ~~~~~-------~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----~~~~-------------~~~~~v  167 (321)
T 3ow8_A          113 KQIKS-------IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----YSLD-------------TRGKFI  167 (321)
T ss_dssp             EEEEE-------EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----EEEE-------------CSSSCE
T ss_pred             CEEEE-------EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----EEec-------------CCCceE
Confidence            55554       45677888999999999 99999999999999999987543    2222             234679


Q ss_pred             cEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          327 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      .+++|+|+|++|++|+ |+.|++||+++ ++++..+.+|...+               ++++|+|++++|++|+.|+.|+
T Consensus       168 ~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~l~~spd~~~l~s~s~dg~i~  231 (321)
T 3ow8_A          168 LSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPI---------------RSLTFSPDSQLLVTASDDGYIK  231 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCC---------------CEEEECTTSCEEEEECTTSCEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCce---------------eEEEEcCCCCEEEEEcCCCeEE
Confidence            9999999999999986 59999999986 88899999888764               6899999999999999999999


Q ss_pred             EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCC
Q 010933          406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN  482 (497)
Q Consensus       406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~  482 (497)
                      +||+++++. ...+.+|...|.+++|+|  ++..     |++++.|+. ++|  ..+.....+.+|...|.+++|+|+++
T Consensus       232 iwd~~~~~~-~~~~~~h~~~v~~~~~sp--~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          232 IYDVQHANL-AGTLSGHASWVLNVAFCP--DDTH-----FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             EEETTTCCE-EEEECCCSSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEECCCcce-eEEEcCCCCceEEEEECC--CCCE-----EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            999998754 488999999999999999  5666     999999999 999  34445556778999999999999999


Q ss_pred             EEEEEeCC-ceEEEe
Q 010933          483 LIACANGN-SLFFHY  496 (497)
Q Consensus       483 ~la~~~~~-~~~i~~  496 (497)
                      +|++++.| .+++|+
T Consensus       304 ~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          304 KIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EEEEEETTCCEEEEE
T ss_pred             EEEEEeCCCeEEEEe
Confidence            99999955 599997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.8e-40  Score=303.62  Aligned_cols=291  Identities=14%  Similarity=0.238  Sum_probs=232.0

Q ss_pred             cCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +|.+.|++++|+|++ ++|++|+.|++|++|++.+...                  .....+..+.+|.           
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~------------------~~~~~~~~~~~h~-----------   65 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ------------------KFGVPVRSFKGHS-----------   65 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT------------------EEEEEEEEEECCS-----------
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc------------------cccccceEEeCCc-----------
Confidence            599999999999965 8999999999999999875321                  0113466788999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  ++++.+|++++.|++|++||+.+++..                                          
T Consensus        66 -~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~------------------------------------------  100 (319)
T 3frx_A           66 -HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETY------------------------------------------  100 (319)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEE------------------------------------------
T ss_pred             -ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCee------------------------------------------
Confidence             89999999  689999999999999999999877632                                          


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        ..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .. ....       +.+|...|.
T Consensus       101 ------------------~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~-~~~~-------~~~h~~~v~  152 (319)
T 3frx_A          101 ------------------QRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ-CLAT-------LLGHNDWVS  152 (319)
T ss_dssp             ------------------EEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC-EEEE-------ECCCSSCEE
T ss_pred             ------------------EEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC-eEEE-------EeccCCcEE
Confidence                              222 6899999999999999999999 99999999997 33 3333       678999999


Q ss_pred             EEEEeCCC-----CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          268 SAEFHPIY-----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       268 ~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      ++++.|.+     ...|++++.|+.|++||+++++..    ..+             .+|...|.+++|+|+|++|++++
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~-------------~~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE----ADF-------------IGHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTTEEE----EEE-------------CCCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh----eee-------------cCCCCcEEEEEEcCCCCEEEEEe
Confidence            99999853     148999999999999999876533    222             34678999999999999999986


Q ss_pred             -cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                       |+.|++||+.. ++.+..+..+..                +.+++|+|++.+|++++.+ .+++|+++.+... ..+..
T Consensus       216 ~dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~-~~~~~  276 (319)
T 3frx_A          216 KDGEIMLWNLAA-KKAMYTLSAQDE----------------VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV-DDLRP  276 (319)
T ss_dssp             TTCEEEEEETTT-TEEEEEEECCSC----------------EEEEEECSSSSEEEEEETT-EEEEEEETTEEEE-EEECC
T ss_pred             CCCeEEEEECCC-CcEEEEecCCCc----------------EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee-eccCc
Confidence             59999999986 788888876543                2689999999999988765 5999999865221 12211


Q ss_pred             cCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          422 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       422 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      +                                      .......+...+.+++|+|||++|++|+.| .+++|+
T Consensus       277 ~--------------------------------------~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          277 E--------------------------------------FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             C--------------------------------------CTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             c--------------------------------------ccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            1                                      011122345578899999999999999955 599996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.9e-40  Score=359.04  Aligned_cols=383  Identities=13%  Similarity=0.126  Sum_probs=275.0

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.                       +..+.+|.           
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------------------~~~~~~h~-----------  657 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------------------LLDIKAHE-----------  657 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS-----------
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEeccCC-----------
Confidence            36999999999999999999999999999999988743                       67788999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCC--Cccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEW  186 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  186 (497)
                       +.|.+++|  +|++++|++++.|+.|++||+.+++.......             +.+.+....+.+  +..++++++.
T Consensus       658 -~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~sg~~  721 (1249)
T 3sfz_A          658 -DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDE-------------HSEQVNCCHFTNKSNHLLLATGSN  721 (1249)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------------CSSCEEEEEECSSSSCCEEEEEET
T ss_pred             -CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-------------CCCcEEEEEEecCCCceEEEEEeC
Confidence             89999999  68999999999999999999998876553322             223333444444  3344555554


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC---------
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP---------  256 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~---------  256 (497)
                        ++.+++||+...   +++..+ .+|...|.+++|+|+++.++++ .||.|++||+.. +.....+..+.         
T Consensus       722 --d~~v~vwd~~~~---~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~  794 (1249)
T 3sfz_A          722 --DFFLKLWDLNQK---ECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPP  794 (1249)
T ss_dssp             --TSCEEEEETTSS---SEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEECCCCC-------
T ss_pred             --CCeEEEEECCCc---chhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-CcccceecccccccccCCcc
Confidence              889999999853   566665 7999999999999999999999 999999999984 33322221110         


Q ss_pred             ---------------------------------------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933          257 ---------------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  297 (497)
Q Consensus       257 ---------------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  297 (497)
                                                             ....+|...|.+++|+|++ .++++++.||.|++||+.++.
T Consensus       795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~  873 (1249)
T 3sfz_A          795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL  873 (1249)
T ss_dssp             -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE
T ss_pred             ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc
Confidence                                                   0012678899999999999 999999999999999998875


Q ss_pred             ccccccceecccccc-------cCCc-----------ccc----------------------------------------
Q 010933          298 LCDHSARILRDAAES-------HGSK-----------SFF----------------------------------------  319 (497)
Q Consensus       298 ~~~~~~~~~~~~~~~-------~~~~-----------~~~----------------------------------------  319 (497)
                      ..    ..+..|...       +...           ..+                                        
T Consensus       874 ~~----~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  949 (1249)
T 3sfz_A          874 KV----ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI  949 (1249)
T ss_dssp             EE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEE
T ss_pred             ee----eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEE
Confidence            43    222221100       0000           000                                        


Q ss_pred             --------ccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933          320 --------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       320 --------~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                              ..+...+.+++|+|+++++++|+. |.|++||+.+ ++.+..+.+|...+               ++++|+|
T Consensus       950 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v---------------~~l~~s~ 1013 (1249)
T 3sfz_A          950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAV---------------RHIQFTA 1013 (1249)
T ss_dssp             EESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCC---------------CCEEECS
T ss_pred             ecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCce---------------EEEEECC
Confidence                    001123444455555555555432 5555555543 44444445554433               5777888


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCC---------------------------------------cceEEEeccCcceeeeEe
Q 010933          391 DGLHFATGSYSNLLRIFSHGVGS---------------------------------------AGGITVEAGKNENRKPIL  431 (497)
Q Consensus       391 ~~~~l~s~~~dg~i~vw~~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~  431 (497)
                      ++++|++++.||.|++||+.+++                                       .....+.+|...+.++++
T Consensus      1014 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 1093 (1249)
T 3sfz_A         1014 DGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093 (1249)
T ss_dssp             SSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEE
Confidence            87777777777777777765432                                       123556778888999999


Q ss_pred             ecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          432 QAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       432 ~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      +|  ++..     +++++.|+. ++|  ..+.......+|...|++++|+|++++||+++.| .+++|+
T Consensus      1094 s~--d~~~-----l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1094 SS--DATK-----FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             CS--SSSS-----CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             CC--CCCE-----EEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            88  6666     999999999 999  4455666778899999999999999999999955 599997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.2e-40  Score=302.10  Aligned_cols=285  Identities=15%  Similarity=0.148  Sum_probs=235.4

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      +..++|.+|.            +.|.+++|  +|++++|++++.||.|++||+.++...                     
T Consensus         4 ~~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~---------------------   48 (304)
T 2ynn_A            4 DIKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEV---------------------   48 (304)
T ss_dssp             CCEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEE---------------------
T ss_pred             eeEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcee---------------------
Confidence            4466788998            89999999  689999999999999999999876532                     


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                             +.+ ..|...|.+++|+|+++.|++| .|+.|++||++ .+
T Consensus        49 ---------------------------------------~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-~~   87 (304)
T 2ynn_A           49 ---------------------------------------RSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TG   87 (304)
T ss_dssp             ---------------------------------------EEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TC
T ss_pred             ---------------------------------------EEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-CC
Confidence                                                   222 6788899999999999999999 99999999999 44


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      +....       +.+|...|.+++|+|++ .+|++++.|+.|++||++++....   ..+             .+|...|
T Consensus        88 ~~~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~---~~~-------------~~h~~~v  143 (304)
T 2ynn_A           88 EKVVD-------FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE---QTF-------------EGHEHFV  143 (304)
T ss_dssp             CEEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEE---EEE-------------CCCCSCE
T ss_pred             cEEEE-------EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchh---hhh-------------cccCCcE
Confidence            45443       67899999999999999 999999999999999998763221   222             3467889


Q ss_pred             cEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcC--CCCEEEEEeCC
Q 010933          327 SDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYS  401 (497)
Q Consensus       327 ~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~s~~~d  401 (497)
                      .+++|+| ++.+|++|+ |+.|++||++. ..+...+. ++...+               ..+.|+|  ++++|++|+.|
T Consensus       144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D  207 (304)
T 2ynn_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDD  207 (304)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCC
Confidence            9999999 678899885 59999999986 55544443 333332               4678876  78899999999


Q ss_pred             CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEe
Q 010933          402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH  478 (497)
Q Consensus       402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~  478 (497)
                      +.|++||+++++. ...+.+|...|..++|+|  ++..     |++|+.|+. ++|  ...+....+..+...+.+++|+
T Consensus       208 ~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p--~~~~-----l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~  279 (304)
T 2ynn_A          208 LTIKIWDYQTKSC-VATLEGHMSNVSFAVFHP--TLPI-----IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH  279 (304)
T ss_dssp             SEEEEEETTTTEE-EEEEECCSSCEEEEEECS--SSSE-----EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEEC
T ss_pred             CeEEEEeCCCCcc-ceeeCCCCCCEEEEEECC--CCCE-----EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEEC
Confidence            9999999998744 488999999999999999  5555     999999999 999  3445555666788899999999


Q ss_pred             cCCC--EEEEEeCCceEEEe
Q 010933          479 PTTN--LIACANGNSLFFHY  496 (497)
Q Consensus       479 p~~~--~la~~~~~~~~i~~  496 (497)
                      |++.  ++|+|+++++.+|.
T Consensus       280 ~~~~~~~~asg~~~g~~~~~  299 (304)
T 2ynn_A          280 PTGRKNYIASGFDNGFTVLS  299 (304)
T ss_dssp             TTCGGGCEEEEETTEEEEEE
T ss_pred             CCCCceEEEEecCCceEEEE
Confidence            9985  68999999999886

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-40  Score=308.75  Aligned_cols=289  Identities=16%  Similarity=0.266  Sum_probs=228.5

Q ss_pred             cCCc-ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc-cccccccCcccccccccc
Q 010933           30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY-KTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        30 ~h~~-~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~  107 (497)
                      .|.+ .|.+++|+|+|++||+|+.|+.|+|||+.++..                     .. .....+|.          
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~---------------------~~~~~~~~~h~----------   61 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW---------------------ICKSVLSEGHQ----------   61 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE---------------------EEEEEECSSCS----------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc---------------------eeeeeeccccC----------
Confidence            4776 999999999999999999999999999987632                     11 12236788          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..|.+++|  +|++++|++++.|+++++|++..+...                                         
T Consensus        62 --~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~-----------------------------------------   96 (345)
T 3fm0_A           62 --RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFE-----------------------------------------   96 (345)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EE-----------------------------------------
T ss_pred             --CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeE-----------------------------------------
Confidence              88999999  689999999999999999998765421                                         


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~  264 (497)
                                       ++..+ .+|...|.+++|+|++++|++| .|+.|++||++....  ....       +.+|..
T Consensus        97 -----------------~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~h~~  151 (345)
T 3fm0_A           97 -----------------CVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-------LNSHTQ  151 (345)
T ss_dssp             -----------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-------ECCCCS
T ss_pred             -----------------EEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-------ecCcCC
Confidence                             22333 7999999999999999999999 999999999984332  2222       678999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  343 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~  343 (497)
                      .|.+++|+|++ .+|++++.|+.|++||+++++...  ...             +.+|...|.+++|+|+|++|++++ |
T Consensus       152 ~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--~~~-------------~~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          152 DVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--CAT-------------LEGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             CEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--EEE-------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--EEE-------------ecCCCCceEEEEECCCCCEEEEEeCC
Confidence            99999999999 999999999999999998754210  012             345678999999999999999986 5


Q ss_pred             CeEEEEecCCCCc--------------eeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          344 MNLKLWDIRMDST--------------PVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       344 ~~i~lwd~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      +.|++||....+.              ++..+.+ |...               +++++|+|++..|++++.|+.|++|+
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT---------------IYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC---------------EEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc---------------EEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            9999999753221              1222222 3222               36999999999999999999999999


Q ss_pred             cCCCCcc--------eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          409 HGVGSAG--------GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       409 ~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ...+...        .....+|...|++++|+|. ...+     |++|+.|+. ++|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~-----laS~s~Dg~v~~W  331 (345)
T 3fm0_A          281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK-EPGL-----LASCSDDGEVAFW  331 (345)
T ss_dssp             ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS-STTE-----EEEEETTSCEEEE
T ss_pred             eCCCCCcceeeEEEEeeecccccCcEeEeEEeCC-CceE-----EEEcCCCCcEEEE
Confidence            8765321        1223589999999999994 2234     899999999 999

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-40  Score=314.99  Aligned_cols=281  Identities=19%  Similarity=0.344  Sum_probs=215.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcc------cccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE------FDYL  103 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~~  103 (497)
                      .|.+.|+|++|+|||++||+|+ ++.++||++.+++.                       +..+..|...      +...
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~-----------------------~~~l~~~~~~~~~~~~~~~~  117 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-----------------------VARLSDDSAANKDPENLNTS  117 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-----------------------EEEECC--------------
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE-----------------------EEEecCcccccccccccccc
Confidence            5999999999999999999987 67999999988753                       2223222200      0000


Q ss_pred             cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      ........|.+++|  +|++++|++++.|+.|++||+.+++..                                     
T Consensus       118 ~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~-------------------------------------  158 (393)
T 1erj_A          118 SSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIV-------------------------------------  158 (393)
T ss_dssp             ---CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEE-------------------------------------
T ss_pred             ccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEE-------------------------------------
Confidence            00011145999999  789999999999999999999876532                                     


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                             ..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .++....+        .+
T Consensus       159 -----------------------~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~--------~~  205 (393)
T 1erj_A          159 -----------------------MIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTL--------SI  205 (393)
T ss_dssp             -----------------------EEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------EC
T ss_pred             -----------------------EEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEE--------Ec
Confidence                                   222 7899999999999999999999 99999999998 45544432        35


Q ss_pred             CCCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          263 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       263 ~~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      ...+.+++|+| ++ .+|++++.|+.|++||+++++..    ..+..      ......+|...|.+++|+|+|++|++|
T Consensus       206 ~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~~l~s~  274 (393)
T 1erj_A          206 EDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQSVVSG  274 (393)
T ss_dssp             SSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCCEEEEE
Confidence            67899999999 77 99999999999999999987644    22211      011124577899999999999999998


Q ss_pred             e-cCeEEEEecCCC-----------CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          342 D-YMNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       342 ~-~~~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      + |+.|++||++..           +.+...+.+|...+               .+++|+|++++|++|+.|+.|++||+
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            6 599999999752           22345566676643               68999999999999999999999999


Q ss_pred             CCCCcceEEEeccCcceeeeEeec
Q 010933          410 GVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       410 ~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      .+++.+ ..+.+|...|.++++++
T Consensus       340 ~~~~~~-~~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          340 KSGNPL-LMLQGHRNSVISVAVAN  362 (393)
T ss_dssp             TTCCEE-EEEECCSSCEEEEEECS
T ss_pred             CCCeEE-EEECCCCCCEEEEEecC
Confidence            988554 78889999999988876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-40  Score=344.00  Aligned_cols=386  Identities=13%  Similarity=0.096  Sum_probs=277.8

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|++++|+|+|++||+|+.||.|+||+..+.+.                       ...+ .|.           
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~~~-~~~-----------   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VIKL-EDR-----------   58 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EEEC-SSC-----------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EEEc-CCC-----------
Confidence            46899999999999999999999999999999866432                       2222 355           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       .+|.+++|+  | +++|++++.|++|++||+.+++......              +.+.+....+.++..+++.+..  
T Consensus        59 -~~V~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--------------~~~~V~~v~~sp~g~~l~sgs~--  118 (902)
T 2oaj_A           59 -SAIKEMRFV--K-GIYLVVINAKDTVYVLSLYSQKVLTTVF--------------VPGKITSIDTDASLDWMLIGLQ--  118 (902)
T ss_dssp             -CCEEEEEEE--T-TTEEEEEETTCEEEEEETTTCSEEEEEE--------------CSSCEEEEECCTTCSEEEEEET--
T ss_pred             -CCEEEEEEc--C-CCEEEEEECcCeEEEEECCCCcEEEEEc--------------CCCCEEEEEECCCCCEEEEEcC--
Confidence             789999995  5 6799999999999999999877543321              2244566667788888888875  


Q ss_pred             CcceEEEeecCCccceeee-------eeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecC----
Q 010933          189 NMATKIANVGNSVHARCQK-------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK----  255 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~----  255 (497)
                      ++.+++||+..........       ..+.+|...|.+++|+|+ +..+++| .|+.| +||++ .++....+...    
T Consensus       119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~~~~g  196 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYELPPF  196 (902)
T ss_dssp             TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCCBCTT
T ss_pred             CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecccCCc
Confidence            8999999998643210000       122689999999999996 5688888 99999 99999 55555543211    


Q ss_pred             -C------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc----------------------c--cc
Q 010933          256 -P------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------S--AR  304 (497)
Q Consensus       256 -~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~----------------------~--~~  304 (497)
                       +      .....|...|.+++|+|+| .+|++++.||.|++||+++++.+..                      .  +.
T Consensus       197 ~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~  275 (902)
T 2oaj_A          197 APGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKIS  275 (902)
T ss_dssp             CCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEE
T ss_pred             CCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCee
Confidence             0      0123456889999999999 9999999999999999987653210                      0  00


Q ss_pred             --ee-------------cc-ccc------------c--------------------------------------------
Q 010933          305 --IL-------------RD-AAE------------S--------------------------------------------  312 (497)
Q Consensus       305 --~~-------------~~-~~~------------~--------------------------------------------  312 (497)
                        .|             .+ ...            .                                            
T Consensus       276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s  355 (902)
T 2oaj_A          276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS  355 (902)
T ss_dssp             EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred             EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence              00             00 000            0                                            


Q ss_pred             ------cCC---------c--c------------------c----------------------------------ccccc
Q 010933          313 ------HGS---------K--S------------------F----------------------------------FTEII  323 (497)
Q Consensus       313 ------~~~---------~--~------------------~----------------------------------~~~~~  323 (497)
                            .+.         .  .                  .                                  +.+|.
T Consensus       356 p~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~  435 (902)
T 2oaj_A          356 PYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGV  435 (902)
T ss_dssp             SHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSB
T ss_pred             CCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCc
Confidence                  000         0  0                  0                                  01112


Q ss_pred             ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCcee--eeee---------ecccccccccccCCCCCccceeEEEEcCC
Q 010933          324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV--ATFK---------IHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                      ..+..++|+|++++|++|+ |++|++||+.. +...  ..+.         +|...               |++++|+||
T Consensus       436 ~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~~~h~~~---------------V~svafspd  499 (902)
T 2oaj_A          436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLNKAKELA---------------VDKISFAAE  499 (902)
T ss_dssp             CCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTTCSSSCC---------------EEEEEEETT
T ss_pred             CCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcCCCCCCc---------------eeEEEecCC
Confidence            2233345578899999985 59999999986 4321  1111         34333               379999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCc--------------------------------------------ceEEEeccCccee
Q 010933          392 GLHFATGSYSNLLRIFSHGVGSA--------------------------------------------GGITVEAGKNENR  427 (497)
Q Consensus       392 ~~~l~s~~~dg~i~vw~~~~~~~--------------------------------------------~~~~~~~~~~~v~  427 (497)
                      +++||+|+.||+|+||++.+++.                                            ....+.+|.++|+
T Consensus       500 g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~  579 (902)
T 2oaj_A          500 TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS  579 (902)
T ss_dssp             TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred             CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence            99999999999999999987631                                            2467889999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eecCCCCCc-------cccc-ccCCCeEEEEEe-----cCC---CEEEEEeCC
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-------ELSY-NLSSKLLHLAWH-----PTT---NLIACANGN  490 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~-------~~~~-~~~~~i~~l~~~-----p~~---~~la~~~~~  490 (497)
                      +++|+|  ++ +     ||+|+.|+. ++|......       .... +|...|++|+|+     |||   .+|++|+.|
T Consensus       580 svafSp--dG-~-----lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D  651 (902)
T 2oaj_A          580 AINNSN--IG-F-----VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM  651 (902)
T ss_dssp             EEEECB--TS-E-----EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred             EEEecC--Cc-E-----EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence            999998  66 6     999999999 999443321       1233 788999999999     886   799999954


Q ss_pred             -ceEEEe
Q 010933          491 -SLFFHY  496 (497)
Q Consensus       491 -~~~i~~  496 (497)
                       .+++|.
T Consensus       652 ~tv~~wd  658 (902)
T 2oaj_A          652 GEVITYK  658 (902)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEE
Confidence             599996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-40  Score=314.93  Aligned_cols=301  Identities=15%  Similarity=0.197  Sum_probs=238.9

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|++++|+|+|++||+|+.||+|+|||..+++.                       ...+.+|.           
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------------~~~~~~h~-----------  108 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------------THAIKLHC-----------  108 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------------EEEEECCC-----------
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------ceEEecCC-----------
Confidence            36999999999999999999999999999999987643                       66788898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  +|++++|++++.|+.+++|++........                                        
T Consensus       109 -~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~----------------------------------------  145 (380)
T 3iz6_a          109 -PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG----------------------------------------  145 (380)
T ss_dssp             -TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC----------------------------------------
T ss_pred             -CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC----------------------------------------
Confidence             88999999  78999999999999999999875431100                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                   .....+. +.+|...|.++.|+|+ +..|++| .|++|++||++ .++....+..  ....+|...|
T Consensus       146 -------------~~~~~~~-~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~--~~~~~h~~~v  208 (380)
T 3iz6_a          146 -------------NMPVSRV-LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGS--EFPSGHTADV  208 (380)
T ss_dssp             -------------SSTTCCB-CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEEEEECC--CSSSSCCSCE
T ss_pred             -------------Cccceee-ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEEEEeec--ccCCCCccCe
Confidence                         0001111 2799999999999996 4568888 99999999999 4555544211  1236799999


Q ss_pred             EEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          267 TSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       267 ~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      .+++|++ ++ ++|++|+.|+.|++||++.....   ...+             .+|...|++++|+|++++|++|+ |+
T Consensus       209 ~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~~---~~~~-------------~~h~~~v~~v~~~p~~~~l~s~s~D~  271 (380)
T 3iz6_a          209 LSLSINSLNA-NMFISGSCDTTVRLWDLRITSRA---VRTY-------------HGHEGDINSVKFFPDGQRFGTGSDDG  271 (380)
T ss_dssp             EEEEECSSSC-CEEEEEETTSCEEEEETTTTCCC---CEEE-------------CCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred             EEEEeecCCC-CEEEEEECCCeEEEEECCCCCcc---eEEE-------------CCcCCCeEEEEEecCCCeEEEEcCCC
Confidence            9999987 55 89999999999999999853211   1333             44678999999999999999986 59


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE----e
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV----E  420 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~----~  420 (497)
                      .|++||+++ ++.+..+..+.....        .....+++++|+|+|++|++|+.||.|++||+.+++.. ..+    .
T Consensus       272 ~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~  341 (380)
T 3iz6_a          272 TCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV-LNLGTLQN  341 (380)
T ss_dssp             CEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE-EEECCSCS
T ss_pred             eEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE-EEEecccC
Confidence            999999997 777777765533210        01111368999999999999999999999999887554 444    6


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      +|.+.|.+++|+|  ++..     |++|+.|+. ++|.
T Consensus       342 ~h~~~v~~l~~s~--dg~~-----l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          342 SHEGRISCLGLSS--DGSA-----LCTGSWDKNLKIWA  372 (380)
T ss_dssp             SCCCCCCEEEECS--SSSE-----EEEECTTSCEEEEE
T ss_pred             CCCCceEEEEECC--CCCE-----EEEeeCCCCEEEEe
Confidence            8999999999999  6777     999999999 9994

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.6e-39  Score=301.66  Aligned_cols=287  Identities=15%  Similarity=0.155  Sum_probs=237.9

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      +...++++|.            +.|++++|  +|++++|++++.|++|++||+.+++...                    
T Consensus        46 ~~~~~l~gH~------------~~v~~~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--------------------   91 (340)
T 1got_B           46 RTRRTLRGHL------------AKIYAMHW--GTDSRLLLSASQDGKLIIWDSYTTNKVH--------------------   91 (340)
T ss_dssp             CEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEE--------------------
T ss_pred             hhheeecCCC------------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCcce--------------------
Confidence            4567788999            89999999  6899999999999999999987765322                    


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                              .+ ..|...|.+++|+|++++|++| .|+.|++|++....
T Consensus        92 ----------------------------------------~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           92 ----------------------------------------AI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             ----------------------------------------EE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             ----------------------------------------Ee-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence                                                    22 5788899999999999999999 99999999998433


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      ......    ..+.+|...|.++.|++++  .+++++.|+.|++||+++++..    ..+.             +|...|
T Consensus       131 ~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~----~~~~-------------~h~~~v  187 (340)
T 1got_B          131 GNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT----TTFT-------------GHTGDV  187 (340)
T ss_dssp             BSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCE
T ss_pred             CcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE----EEEc-------------CCCCce
Confidence            211110    1267899999999999986  5899999999999999987644    3333             466889


Q ss_pred             cEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          327 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      .+++|+|+++++++|+ |+.|++||+++ ++++..+.+|...+               ++++|+|++++|++|+.||.|+
T Consensus       188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~d~~v~  251 (340)
T 1got_B          188 MSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDATCR  251 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCE---------------EEEEEcCCCCEEEEEcCCCcEE
Confidence            9999999999999986 59999999986 88889999888764               7999999999999999999999


Q ss_pred             EEEcCCCCcceEEEe--ccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecC
Q 010933          406 IFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       406 vw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~  480 (497)
                      +||+.+++.+ ..+.  .+...+.+++|+|  ++.+     +++|+.|+. ++|  ........+.+|...|.+++|+|+
T Consensus       252 iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d  323 (340)
T 1got_B          252 LFDLRADQEL-MTYSHDNIICGITSVSFSK--SGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             EEECCCCcEE-EEEccCCcccceEEEEECC--CCCE-----EEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC
Confidence            9999987443 3333  2335799999999  6676     999999999 999  344455667789999999999999


Q ss_pred             CCEEEEEeCC-ceEEEe
Q 010933          481 TNLIACANGN-SLFFHY  496 (497)
Q Consensus       481 ~~~la~~~~~-~~~i~~  496 (497)
                      +.+||+|+.| .+++|+
T Consensus       324 g~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          324 GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEcCCccEEecC
Confidence            9999999955 599995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-41  Score=322.46  Aligned_cols=338  Identities=11%  Similarity=0.178  Sum_probs=262.5

Q ss_pred             ccCCcceEEEEEcCCCC-EEEEe----------ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccC
Q 010933           29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHE   97 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~-~lasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~   97 (497)
                      +.+...|.+++|+|+|+ +||+|          +.|+.|+|||+.++..                    .+.+..+ .|.
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~--------------------~~~~~~~-~~~   67 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS--------------------EKPIASL-QVD   67 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG--------------------CSCSCCC-CCS
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC--------------------CcEEEEE-ecC
Confidence            44667899999999997 99999          8899999999987642                    0112222 466


Q ss_pred             cccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCC
Q 010933           98 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  177 (497)
Q Consensus        98 ~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (497)
                                  ..|.+++|  +|++.+|++++.|+.|++|++......                               
T Consensus        68 ------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~-------------------------------  102 (416)
T 2pm9_A           68 ------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNA-------------------------------  102 (416)
T ss_dssp             ------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSC-------------------------------
T ss_pred             ------------CceEEEEE--CCCCCeEEEEccCCeEEEeeccccccc-------------------------------
Confidence                        88999999  689999999999999999999763200                               


Q ss_pred             cccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCc------eee
Q 010933          178 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD------QCF  249 (497)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~------~~~  249 (497)
                                               .+++..+ .+|...|.+++|+|+ +++|+++ .|+.|++||+....      ...
T Consensus       103 -------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  156 (416)
T 2pm9_A          103 -------------------------INSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL  156 (416)
T ss_dssp             -------------------------CCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred             -------------------------ccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence                                     0122222 689999999999998 8999999 99999999998543      221


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  329 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  329 (497)
                      ..     .....|...|.+++|+|++..+|++++.|+.|++||+++++..    ..+..+..       ..+|...+.++
T Consensus       157 ~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~-------~~~~~~~v~~~  220 (416)
T 2pm9_A          157 TP-----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTSP-------NSGIKQQLSVV  220 (416)
T ss_dssp             CC-----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCCC-------SSCCCCCEEEE
T ss_pred             cc-----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEecccc-------ccccCCceEEE
Confidence            11     2346799999999999994389999999999999999987654    33333110       12335789999


Q ss_pred             EEeeCC-CEEEEEec-C---eEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCC
Q 010933          330 KFANDG-QHLLSRDY-M---NLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSN  402 (497)
Q Consensus       330 ~~s~~g-~~l~~~~~-~---~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg  402 (497)
                      +|+|++ .+++++++ +   .|++||++....++..+. +|...+               ++++|+| ++++|++++.||
T Consensus       221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~dg  285 (416)
T 2pm9_A          221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI---------------LSLDWCHQDEHLLLSSGRDN  285 (416)
T ss_dssp             EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE---------------EEEEECSSCSSCEEEEESSS
T ss_pred             EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce---------------eEEEeCCCCCCeEEEEeCCC
Confidence            999997 57888754 6   999999987446777777 777654               7999999 999999999999


Q ss_pred             cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc-ccccccceeEeeccCc-eecCCCCC--cccc-------------
Q 010933          403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA-RRSSLSNLTRGLYRQA-HENSSSGH--HELS-------------  465 (497)
Q Consensus       403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~l~~~~~d~~-~iw~~~~~--~~~~-------------  465 (497)
                      .|++||+.+++. ...+.+|..++.+++|+|  ++ ..     +++++.|+. ++|.....  ....             
T Consensus       286 ~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~--~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  357 (416)
T 2pm9_A          286 TVLLWNPESAEQ-LSQFPARGNWCFKTKFAP--EAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD  357 (416)
T ss_dssp             EEEEECSSSCCE-EEEEECSSSCCCCEEECT--TCTTE-----EEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred             CEEEeeCCCCcc-ceeecCCCCceEEEEECC--CCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence            999999998855 488999999999999999  44 55     899999999 99932211  1111             


Q ss_pred             ----------------------cccCCCeEEEEEecCCCEEEEEe-CCceEEEeC
Q 010933          466 ----------------------YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  497 (497)
Q Consensus       466 ----------------------~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~~  497 (497)
                                            ..+..++..++|+|+|++||+++ ++.++||..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence                                  01567888999999999999999 455999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=313.26  Aligned_cols=328  Identities=15%  Similarity=0.159  Sum_probs=255.6

Q ss_pred             cccCCcceEEEEEcCCCC-EEEEeecCCeEEEEEe----cCCccccchhhhhhhcccCCCCCCccccccccc------cc
Q 010933           28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ------SH   96 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h   96 (497)
                      ...|.+.|++++|+|+|+ +||+|+.||.|++|++    .+++.....             .+.......+.      +|
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  107 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL-------------TIIAELRHPFALSASSGKT  107 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE-------------EEEEEEECCCCCC------
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc-------------cccccccccccccccccCC
Confidence            345679999999999999 9999999999999999    766410000             00011112222      24


Q ss_pred             CcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCC
Q 010933           97 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  176 (497)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (497)
                      .            +.|.+++|  +|++.+|++++.|+.|++|+. +++                                
T Consensus       108 ~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~-~~~--------------------------------  140 (425)
T 1r5m_A          108 T------------NQVTCLAW--SHDGNSIVTGVENGELRLWNK-TGA--------------------------------  140 (425)
T ss_dssp             C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSC--------------------------------
T ss_pred             C------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeC-CCC--------------------------------
Confidence            5            78999999  689999999999999999993 222                                


Q ss_pred             CcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC
Q 010933          177 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  255 (497)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  255 (497)
                                                  .+..+ ..|...|.+++|+|+++.|+++ .|+.|++||+. .++....    
T Consensus       141 ----------------------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~----  186 (425)
T 1r5m_A          141 ----------------------------LLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQH----  186 (425)
T ss_dssp             ----------------------------EEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEE----
T ss_pred             ----------------------------eeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEE----
Confidence                                        12222 6889999999999999999999 99999999998 4555544    


Q ss_pred             CCccCCCCCC---------------eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc
Q 010933          256 PSNMDDLTEV---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  320 (497)
Q Consensus       256 ~~~~~~~~~~---------------i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (497)
                         +..+...               +.+++|+|++  .+++++.||.|++||+++++..    ..+.             
T Consensus       187 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~----~~~~-------------  244 (425)
T 1r5m_A          187 ---FELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT----GKLI-------------  244 (425)
T ss_dssp             ---ECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----EEEC-------------
T ss_pred             ---eeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----eeec-------------
Confidence               2333333               8899999985  6899999999999999987543    3333             


Q ss_pred             cccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          321 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       321 ~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      .|...+.+++|+|++++|++++ ++.|++||++. ++.+..+..|...+               .+++|+|++ +|++++
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~  307 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI---------------VSASWVGDD-KVISCS  307 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE---------------EEEEEETTT-EEEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccE---------------EEEEECCCC-EEEEEe
Confidence            3557899999999999999986 59999999986 78888888777654               689999999 999999


Q ss_pred             CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CC----------------
Q 010933          400 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SG----------------  460 (497)
Q Consensus       400 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~----------------  460 (497)
                      .|+.|++||+.+++ ....+..|..++..++++|  ++..     +++++.|+. .+|..  ..                
T Consensus       308 ~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  379 (425)
T 1r5m_A          308 MDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQ--DGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP  379 (425)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECTTCCEEEEEECT--TSSE-----EEEEETTSCEEEEECHHHHC--------------C
T ss_pred             CCCcEEEEECCCCc-EeEecccCCccEEEEEEcC--CCCE-----EEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence            99999999999874 4478889999999999999  5666     999999999 99922  22                


Q ss_pred             ----CcccccccCC--CeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          461 ----HHELSYNLSS--KLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       461 ----~~~~~~~~~~--~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                          .......+..  .|++++|+|++++||+++.+ .+++|+
T Consensus       380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence                3445566765  99999999999999998855 499997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-39  Score=314.68  Aligned_cols=328  Identities=11%  Similarity=0.130  Sum_probs=253.4

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      +.+++++|+|+|++|++|+.||.|++||+.+++.                       ...+..|.              +
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-----------------------~~~~~~~~--------------~   99 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-----------------------SKMLKRAD--------------Y   99 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET-----------------------TTTSCSCC--------------E
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccce-----------------------eeEEecCC--------------c
Confidence            4456899999999999999999999999877532                       33444443              4


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      ..+.+. ++++++|++++.|+.|++||+.+++...                                             
T Consensus       100 ~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------------------------  133 (420)
T 3vl1_A          100 TAVDTA-KLQMRRFILGTTEGDIKVLDSNFNLQRE---------------------------------------------  133 (420)
T ss_dssp             EEEEEE-CSSSCEEEEEETTSCEEEECTTSCEEEE---------------------------------------------
T ss_pred             eEEEEE-ecCCCEEEEEECCCCEEEEeCCCcceee---------------------------------------------
Confidence            444333 6899999999999999999988655322                                             


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                                     . +.+|...|.+++|+|+++.|++| .|+.|++||++ .++....       +.+|...|.+++|
T Consensus       134 ---------------~-~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-------~~~h~~~v~~~~~  189 (420)
T 3vl1_A          134 ---------------I-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRT-------LIGHRATVTDIAI  189 (420)
T ss_dssp             ---------------E-TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEE-------EECCSSCEEEEEE
T ss_pred             ---------------e-cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceE-------EcCCCCcEEEEEE
Confidence                           1 26899999999999999999999 99999999998 4444443       6789999999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCC-----------ccccccccccccEEEEeeCCCEEEE
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-----------KSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      +|++ .+|++++.|+.|++||+++++..    ..+..+......           ......+...+.+++|+|++++|++
T Consensus       190 ~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (420)
T 3vl1_A          190 IDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA  264 (420)
T ss_dssp             ETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred             cCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence            9999 99999999999999999987654    333332111110           0112234567788888999999999


Q ss_pred             Ee-cCeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcceE
Q 010933          341 RD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGI  417 (497)
Q Consensus       341 ~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~  417 (497)
                      ++ +|.|++||+++ ++.+..+. .|...+               ++++|+|+++ +|++|+.||.|++||+.+++....
T Consensus       265 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          265 GHVSGVITVHNVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG  328 (420)
T ss_dssp             EETTSCEEEEETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred             EcCCCeEEEEECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence            86 49999999987 55555553 344433               7999999999 999999999999999999866557


Q ss_pred             EEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC-----------CcccccccCCCeEEEEEecCCC--
Q 010933          418 TVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHPTTN--  482 (497)
Q Consensus       418 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~-----------~~~~~~~~~~~i~~l~~~p~~~--  482 (497)
                      .+.. |..++..+.+.   ++..     |++++.|+. ++|....           .......+...|.+++|+|+++  
T Consensus       329 ~~~~~~~~~v~~~~~~---~~~~-----l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  400 (420)
T 3vl1_A          329 EFLINEGTPINNVYFA---AGAL-----FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN  400 (420)
T ss_dssp             EEEESTTSCEEEEEEE---TTEE-----EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred             hhhccCCCCceEEEeC---CCCE-----EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence            7776 67778777654   3445     999999999 9993221           1223457788999999999999  


Q ss_pred             --EEEEEeCCceEEEe
Q 010933          483 --LIACANGNSLFFHY  496 (497)
Q Consensus       483 --~la~~~~~~~~i~~  496 (497)
                        ++++|+.+.+.+|+
T Consensus       401 g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          401 GEVLEVGKNNFCALYN  416 (420)
T ss_dssp             CEEEEEETTTEEEEEE
T ss_pred             ceEEEEcCCceEEEEe
Confidence              67777788888887

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-39  Score=299.90  Aligned_cols=293  Identities=15%  Similarity=0.208  Sum_probs=217.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cc-cCcccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDYLKSLE  107 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~~~  107 (497)
                      +|.+.|++++|+|+  +||+|+.|+.|+|||+..+..                     .....+ .+ |.          
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~----------   58 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK----------   58 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC----------
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc----------
Confidence            59999999999998  999999999999999976521                     223334 33 88          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..|.+++|  +|++.+|++++.|++|++|++........                                       
T Consensus        59 --~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~---------------------------------------   95 (330)
T 2hes_X           59 --KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTF---------------------------------------   95 (330)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------C---------------------------------------
T ss_pred             --CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCccc---------------------------------------
Confidence              88999999  68899999999999999999864321000                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc---eeeEEeecCCCccCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---QCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~  263 (497)
                                    ..+++..+ .+|...|.+++|+|++++|++| .|+.|++||++..+   +....       +.+|.
T Consensus        96 --------------~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~-------~~~h~  153 (330)
T 2hes_X           96 --------------EMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV-------LQEHS  153 (330)
T ss_dssp             --------------CCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE-------ECCCS
T ss_pred             --------------cceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE-------eccCC
Confidence                          11233333 7999999999999999999999 99999999995333   23333       67899


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC--CCEEEEE
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR  341 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~  341 (497)
                      ..|.+++|+|++ .+|++++.|+.|++||.+++...  ....             +.+|...|.+++|+|+  +.+|+++
T Consensus       154 ~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~~~~-------------~~~h~~~v~~~~~~~~~~~~~l~s~  217 (330)
T 2hes_X          154 QDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--CVAV-------------LNGHEGTVWSSDFDKTEGVFRLCSG  217 (330)
T ss_dssp             SCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--EEEE-------------ECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred             CceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--EEEE-------------ccCCCCcEEEEEecCCCCeeEEEEE
Confidence            999999999999 99999999999999998765210  0122             3456789999999998  6788887


Q ss_pred             e-cCeEEEEecCCCC-------ceeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          342 D-YMNLKLWDIRMDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       342 ~-~~~i~lwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      + |+.|++||+....       .+...+.. |...+               ++++|++++ +|++++.||.|++|+..++
T Consensus       218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV---------------YNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE---------------EEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             eCCCeEEEEEecCCCccccceeEEeeecccccccce---------------EEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence            5 5999999986421       22333333 44433               689999765 8999999999999999876


Q ss_pred             Cc--ceEEEeccCc-ceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          413 SA--GGITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       413 ~~--~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      +.  ....+.+|.. .++.++|+|..++..     |++|+.|+. ++|.
T Consensus       282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~-----las~s~Dg~v~~W~  325 (330)
T 2hes_X          282 EWKVFAKRALCHGVYEINVVKWLELNGKTI-----LATGGDDGIVNFWS  325 (330)
T ss_dssp             EEEEEEEESCTTTTSCEEEEEEC-----CC-----EEEEETTSEEEEEE
T ss_pred             ceEEEeccccccccceEEEEEEecCCCceE-----EEEecCCCcEEEEE
Confidence            32  2233467887 899999998545666     999999999 9993

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=298.12  Aligned_cols=293  Identities=16%  Similarity=0.226  Sum_probs=231.0

Q ss_pred             ccccccccccCccccccccccccc-ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933           87 YRYKTEFQSHEPEFDYLKSLEIEE-KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  165 (497)
Q Consensus        87 ~~~~~~~~~h~~~~~~~~~~~~~~-~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (497)
                      +..+.++++|.            + .|++++|  +|++++|++++.|++|++|++.++....                  
T Consensus         5 ~~~~~~~~~h~------------~~~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~------------------   52 (345)
T 3fm0_A            5 LVLLGRVPAHP------------DSRCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWIC------------------   52 (345)
T ss_dssp             EEEEEEECCST------------TSCEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEE------------------
T ss_pred             EEEeeeecCCC------------CCcEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCccee------------------
Confidence            35577788998            5 8999999  7899999999999999999987654211                  


Q ss_pred             ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc
Q 010933          166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  244 (497)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  244 (497)
                                                              ...+..+|...|.+++|+|++++|++| .|+.|++|+...
T Consensus        53 ----------------------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           53 ----------------------------------------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             ----------------------------------------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             ----------------------------------------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence                                                    111226899999999999999999999 999999999873


Q ss_pred             Cc-eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          245 SD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      .. .....       +.+|...|.+++|+|++ ++|++++.|+.|++||++++...    ....          .+.+|.
T Consensus        93 ~~~~~~~~-------~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~----~~~~----------~~~~h~  150 (345)
T 3fm0_A           93 DDFECVTT-------LEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY----ECVS----------VLNSHT  150 (345)
T ss_dssp             C-EEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE----EEEE----------EECCCC
T ss_pred             CCeEEEEE-------ccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe----EEEE----------EecCcC
Confidence            32 23333       77899999999999999 99999999999999999875421    1111          134467


Q ss_pred             ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCc--eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      ..|.+++|+|++++|++++ |+.|++||++. +.  +...+.+|...+               ++++|+|++++|++|+.
T Consensus       151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~v---------------~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          151 QDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHESTV---------------WSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECTTSSEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCce---------------EEEEECCCCCEEEEEeC
Confidence            8899999999999999986 59999999985 43  456778887754               79999999999999999


Q ss_pred             CCcEEEEEcCCCCcc--------------eEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC--CC-
Q 010933          401 SNLLRIFSHGVGSAG--------------GITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GH-  461 (497)
Q Consensus       401 dg~i~vw~~~~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~--~~-  461 (497)
                      |+.|++|+.......              ...+.+ |...|+.+++++  ++..     +++++.|+. ++|...  .. 
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~-----l~s~~~d~~i~vw~~~~~~~~  287 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ--LTGA-----LATACGDDAIRVFQEDPNSDP  287 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT--TTCC-----EEEEETTSCEEEEEECTTSCT
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec--CCCE-----EEEEeCCCeEEEEEeCCCCCc
Confidence            999999997432211              123343 888999999998  4555     899999999 999221  11 


Q ss_pred             ---c-----ccccccCCCeEEEEEecCCC-EEEEEeC-CceEEEe
Q 010933          462 ---H-----ELSYNLSSKLLHLAWHPTTN-LIACANG-NSLFFHY  496 (497)
Q Consensus       462 ---~-----~~~~~~~~~i~~l~~~p~~~-~la~~~~-~~~~i~~  496 (497)
                         .     ....+|...|++++|+|++. +||+|+. +.+++|.
T Consensus       288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~  332 (345)
T 3fm0_A          288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK  332 (345)
T ss_dssp             TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence               1     11247899999999999984 8999984 5599997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.9e-38  Score=319.30  Aligned_cols=385  Identities=11%  Similarity=0.088  Sum_probs=288.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|.+.|++++|+|+|++||+++ ++.|+|||+.++..                   ..+....+.+|.           
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~-----------   63 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG-----------   63 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT-----------
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC-----------
Confidence            45889999999999999999998 78999999987611                   112367788998           


Q ss_pred             ccc-eeEEEEEecC--CCCEEEEEeCCccEEEeecCch------heeccccCCCCCccccccccccccCccccCCCCCcc
Q 010933          109 EEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  179 (497)
Q Consensus       109 ~~~-i~~l~~~~s~--~~~~l~s~s~d~~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (497)
                       .. |.+++|  +|  ++++|++++.|+.|++||+.++      .......           ...+.+.+....+.++..
T Consensus        64 -~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~  129 (615)
T 1pgu_A           64 -SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-----------FQVLAGPISDISWDFEGR  129 (615)
T ss_dssp             -TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-----------EECCSSCEEEEEECTTSS
T ss_pred             -CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccch-----------hhcccccEEEEEEeCCCC
Confidence             88 999999  67  9999999999999999999755      2111111           111234455566677777


Q ss_pred             cccccccccC--cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecC
Q 010933          180 HGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK  255 (497)
Q Consensus       180 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  255 (497)
                      +++.++...+  +.+.+|+.     .+.+..+ .+|...|.+++|+|+++ .++++ .|+.|++||.. ..+....    
T Consensus       130 ~l~~~~~~~~~~~~v~~~d~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~----  198 (615)
T 1pgu_A          130 RLCVVGEGRDNFGVFISWDS-----GNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS----  198 (615)
T ss_dssp             EEEEEECCSSCSEEEEETTT-----CCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE----
T ss_pred             EEEEeccCCCCccEEEEEEC-----CCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee----
Confidence            7777765332  56777773     2355555 79999999999999998 78888 99999999998 5555554    


Q ss_pred             CCccCCCCC---CeEEEEEeCC-CCcEEEEEeCCCeEEEEEccCCccccccccee-cccccccCCccccccccccccEEE
Q 010933          256 PSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       256 ~~~~~~~~~---~i~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                         +.+|..   .|.+++|+|+ + .+|++++.||.|++||+++++..    ..+ ..          ...|...|.+++
T Consensus       199 ---~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v~~~~  260 (615)
T 1pgu_A          199 ---DRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGIFALS  260 (615)
T ss_dssp             ---ECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCEEEEE
T ss_pred             ---ecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCceEEEE
Confidence               667888   9999999999 8 99999999999999999987654    332 10          013557889999


Q ss_pred             EeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec---------------------------------------------
Q 010933          331 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH---------------------------------------------  364 (497)
Q Consensus       331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~---------------------------------------------  364 (497)
                      |+ ++++|++++ ++.|++||+++ ++.+..+..+                                             
T Consensus       261 ~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~  338 (615)
T 1pgu_A          261 WL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH  338 (615)
T ss_dssp             ES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred             Ec-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence            99 888888875 48999999875 4444433322                                             


Q ss_pred             cccccccc------------------------------------------------------------------------
Q 010933          365 EHLRPKLC------------------------------------------------------------------------  372 (497)
Q Consensus       365 ~~~~~~~~------------------------------------------------------------------------  372 (497)
                      ...+..++                                                                        
T Consensus       339 ~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~  418 (615)
T 1pgu_A          339 NKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG  418 (615)
T ss_dssp             SSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSS
T ss_pred             CCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCC
Confidence            10000000                                                                        


Q ss_pred             -----------------------------------------------c---------------cCCCCCccceeEEEEcC
Q 010933          373 -----------------------------------------------D---------------LYNNDSIFDKFECSVSG  390 (497)
Q Consensus       373 -----------------------------------------------~---------------~~~~~~~~~~~~~~~s~  390 (497)
                                                                     +               ..-......+++++|+|
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  498 (615)
T 1pgu_A          419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP  498 (615)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT
T ss_pred             CEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC
Confidence                                                           0               00000112357899999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcceEEEec-cCcceeeeEeecCC--------CcccccccceeEeeccCc-eecCC--
Q 010933          391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSS--  458 (497)
Q Consensus       391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~~~~~~~~l~~~~~d~~-~iw~~--  458 (497)
                      ++++|++++.||.|++||+.+++.+ ..+.+ |..++++++|+|..        ++.+     |++++.|+. ++|..  
T Consensus       499 ~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-----l~~~~~dg~i~iw~~~~  572 (615)
T 1pgu_A          499 SETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIYSVKR  572 (615)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEEESSC
T ss_pred             CCCEEEEcCCCCeEEEeeCCCCcce-eEeecCCCCceeEEEEcCccccccccccCCCE-----EEEEcCCCcEEEEECCC
Confidence            9999999999999999999988554 66777 99999999999832        4555     999999999 99932  


Q ss_pred             C-CCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          459 S-GHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       459 ~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      + .......+|...|++++|+|+++ |++++.| .+++|+
T Consensus       573 ~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          573 PMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             TTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             CceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence            2 45556778999999999999999 8888854 599996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-40  Score=320.90  Aligned_cols=338  Identities=12%  Similarity=0.053  Sum_probs=235.8

Q ss_pred             cccCCcceEEEEEcCCC---------CEEEEe-------------------ecCCeEEEEEecCCccccchhhhhhhccc
Q 010933           28 ELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNHISRSELEKQMDF   79 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g---------~~lasg-------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   79 (497)
                      .+.+.+.|.+|+|+|++         ++||+|                   +.|++|+||++++++.             
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~-------------  195 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL-------------  195 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC-------------
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC-------------
Confidence            34457889999999986         677764                   4678999999987642             


Q ss_pred             CCCCCCcccccccccccCcccccccccccccceeEEEEEec----CCCCEEEEEeCCccEEEeecCchheeccccCCCCC
Q 010933           80 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP  155 (497)
Q Consensus        80 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s----~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~  155 (497)
                            .......+.+|.            +.|.+++|+|.    +++.+|++++.||+|++||+..+.........   
T Consensus       196 ------~~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~---  254 (524)
T 2j04_B          196 ------HCVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM---  254 (524)
T ss_dssp             ------CEEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC---
T ss_pred             ------CceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee---
Confidence                  111123456677            88999999753    34679999999999999999765421000000   


Q ss_pred             ccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC
Q 010933          156 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD  234 (497)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d  234 (497)
                                                                    ..++...+ .+|...|++++|++++ .|++| .|
T Consensus       255 ----------------------------------------------~~~p~~~l-~~h~~~v~sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          255 ----------------------------------------------CEKPSLTL-SLADSLITTFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             ----------------------------------------------CCSCSEEE-CCTTTCEEEEEESSSS-EEEEEETT
T ss_pred             ----------------------------------------------ecCceEEE-EcCCCCEEEEEecCCC-eEEEEeCC
Confidence                                                          00122233 7899999999999865 78888 99


Q ss_pred             CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE--EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccc
Q 010933          235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  312 (497)
Q Consensus       235 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~  312 (497)
                      |+|++||++........       +.+|...|.++  +|+|++..+||+++.|+.|+|||+++++..    ..+..|.. 
T Consensus       287 gtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~~~~~-  354 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTVSRFR-  354 (524)
T ss_dssp             SEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEEEECS-
T ss_pred             CEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----cccccccc-
Confidence            99999999844333332       67899999999  467764368999999999999999987644    33333210 


Q ss_pred             cCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933          313 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                                ...+.+++|+|+++.+++++ ++.|++||++. +.++..+.+|...+               ++++|+|+
T Consensus       355 ----------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~sva~Sp~  408 (524)
T 2j04_B          355 ----------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TAIGVSRL  408 (524)
T ss_dssp             ----------CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EEEECCSS
T ss_pred             ----------cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EEEEeCCC
Confidence                      12478999999999999885 49999999987 77778888998865               79999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcceEEEec-----cCcceeeeEeecCCCcccccccceeEeeccCceec--C-CCCCcc
Q 010933          392 GLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--S-SSGHHE  463 (497)
Q Consensus       392 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw--~-~~~~~~  463 (497)
                      +++|++|+.||+|++||+..+ .. ...+.     +...+++++|+|  ++..     + . ..++..+|  . .+....
T Consensus       409 g~~l~Sgs~Dgtv~lwd~~~~-~~-~~~~~~~~~~~~~~v~~v~~sp--~g~~-----~-~-~~~~~~~~~~~~~g~~~~  477 (524)
T 2j04_B          409 HPMVLAGSADGSLIITNAARR-LL-HGIKNSSATQKSLRLWKWDYSI--KDDK-----Y-R-IDSSYEVYPLTVNDVSKA  477 (524)
T ss_dssp             CCBCEEEETTTEEECCBSCSS-TT-TCC------CCCCEEEECBCCS--SSCE-----E-E-ECCCCCCCC---------
T ss_pred             CCeEEEEECCCEEEEEechHh-hc-cccccCccceeeeEEEEeccCC--CCCe-----E-E-ccCCceecccccCCccee
Confidence            999999999999999998654 21 22111     122567888888  3332     2 2 22333444  2 355666


Q ss_pred             cccccCCCeEEEEEecCCC---EEEEEeC-CceEEEe
Q 010933          464 LSYNLSSKLLHLAWHPTTN---LIACANG-NSLFFHY  496 (497)
Q Consensus       464 ~~~~~~~~i~~l~~~p~~~---~la~~~~-~~~~i~~  496 (497)
                      .+.+|...|.+|+|+|+++   .||+|+. +.++||.
T Consensus       478 ~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          478 KIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             eecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            7889999999999999965   8999996 4599996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-38  Score=348.92  Aligned_cols=381  Identities=15%  Similarity=0.184  Sum_probs=282.8

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++.                       +..+.+|.            
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----------------------~~~~~~~~------------  699 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-----------------------VHTYDEHS------------  699 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECCS------------
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-----------------------EEEEcCCC------------
Confidence            5899999999999999999999999999999988743                       67788998            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|+|..++..+++++.|+.|++||+.+++.......+             .+.+....+.++...+++++.  +
T Consensus       700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~~l~s~s~--d  764 (1249)
T 3sfz_A          700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-------------TNSVNHCRFSPDDELLASCSA--D  764 (1249)
T ss_dssp             SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-------------SSCEEEEEECSSTTEEEEEES--S
T ss_pred             CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC-------------CCCEEEEEEecCCCEEEEEEC--C
Confidence            8899999965446778999999999999999988755433221             122223333334444444433  4


Q ss_pred             cceEEEeecCCc---------------------------------------------------cceeeeeeccCCCCCee
Q 010933          190 MATKIANVGNSV---------------------------------------------------HARCQKVYPHAHDFNIN  218 (497)
Q Consensus       190 ~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~h~~~v~  218 (497)
                      +.+++||+....                                                   .......+..+|...|.
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence            445555543221                                                   11233333358899999


Q ss_pred             EEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933          219 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  297 (497)
Q Consensus       219 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  297 (497)
                      +++|+|+++.++++ .|+.|++||+. .+.....       +.+|...|.+++|+|++ ..|++++.||.|++||+.+..
T Consensus       845 ~~~~sp~~~~l~~~~~dg~v~vwd~~-~~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~  915 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIALSQYCVELWNID-SRLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVC  915 (1249)
T ss_dssp             EEEECSSTTEEEEECSSSCEEEEETT-TTEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHH
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcC-CCceeee-------cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccc
Confidence            99999999999999 99999999999 5555544       67899999999999999 999999999999999976421


Q ss_pred             cccc----------------------------------------------------------------ccceeccccccc
Q 010933          298 LCDH----------------------------------------------------------------SARILRDAAESH  313 (497)
Q Consensus       298 ~~~~----------------------------------------------------------------~~~~~~~~~~~~  313 (497)
                      ....                                                                .+..+..  ...
T Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~--~~~  993 (1249)
T 3sfz_A          916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PNN  993 (1249)
T ss_dssp             SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET--TTT
T ss_pred             eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc--CCC
Confidence            1000                                                                0000000  001


Q ss_pred             CCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCcee----------------------------------
Q 010933          314 GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV----------------------------------  358 (497)
Q Consensus       314 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~----------------------------------  358 (497)
                      .....+.+|...|.+++|+|+|++|++++ |+.|++||+.+ ++..                                  
T Consensus       994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A          994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp             SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEET
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEEC
Confidence            11123457888999999999999988875 48888888765 3322                                  


Q ss_pred             ------eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEee
Q 010933          359 ------ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  432 (497)
Q Consensus       359 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  432 (497)
                            ..+.+|...               +++++|+|++++|++++.||.|++||+.+++.. ..+.+|..+|.+++|+
T Consensus      1073 ~~~~~~~~~~~~~~~---------------v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A         1073 ITGRIERDFTCHQGT---------------VLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-HELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp             TTTCCCEEEECCSSC---------------CCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-BCCCCCSSCEEEEEEC
T ss_pred             CCCceeEEEcccCCc---------------EEEEEECCCCCEEEEEcCCCcEEEEECCCccee-eeeccCCCcEEEEEEC
Confidence                  122222221               368999999999999999999999999988654 7889999999999999


Q ss_pred             cCCCcccccccceeEeeccCc-eec--CCCCCcccc---------cccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          433 AAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS---------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       433 ~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~---------~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      |  ++..     +++|+.||. ++|  ..++.....         ..|...|++++|+|++++|++++ +.+++|.
T Consensus      1137 ~--dg~~-----lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A         1137 L--DGIL-----LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp             S--SSSE-----EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred             C--CCCE-----EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence            9  6666     999999999 999  333333332         56888999999999999999886 7899996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.2e-38  Score=329.09  Aligned_cols=323  Identities=16%  Similarity=0.183  Sum_probs=263.9

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.||.|+|||+.+++.                       +..+.+|.            
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------------------~~~~~~~~------------   55 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------------------VRSIQVTE------------   55 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS------------
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------------------EEEEecCC------------
Confidence            5899999999999999999999999999999987643                       67788898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+|.+++|  +|++++|++++.||.|++|++.+++...                                          
T Consensus        56 ~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~------------------------------------------   91 (814)
T 3mkq_A           56 TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVV------------------------------------------   91 (814)
T ss_dssp             SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEE------------------------------------------
T ss_pred             CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------------------
Confidence            89999999  5789999999999999999998766322                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                        .+ .+|...|.+++|+|+++.|+++ .|+.|++||++........       +.+|...|.+
T Consensus        92 ------------------~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~~v~~  145 (814)
T 3mkq_A           92 ------------------DF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMC  145 (814)
T ss_dssp             ------------------EE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCSSCEEE
T ss_pred             ------------------EE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCCCcEEE
Confidence                              22 6889999999999999999999 9999999999854455554       6789999999


Q ss_pred             EEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEec-C
Q 010933          269 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDY-M  344 (497)
Q Consensus       269 ~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~-~  344 (497)
                      ++|+| ++ ..|++++.||.|++||++++...    ..+..            .+...+.+++|+|  ++.+|++++. +
T Consensus       146 ~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~~l~~~~~dg  208 (814)
T 3mkq_A          146 VAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLTT------------GQERGVNYVDYYPLPDKPYMITASDDL  208 (814)
T ss_dssp             EEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEEC------------CCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEec------------CCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence            99999 77 89999999999999999876543    22222            1236799999999  9999999864 9


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      .|++||+++ ++.+..+.+|...+               .+++|+|++++|++++.||.|++||+.+++. ...+..|..
T Consensus       209 ~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~  271 (814)
T 3mkq_A          209 TIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKTLNVGLE  271 (814)
T ss_dssp             EEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCSE-EEEECCSSS
T ss_pred             EEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEeecCCC
Confidence            999999986 88888898887754               6899999999999999999999999998754 488899999


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCceecCCCCC--c----------------------------------------
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGH--H----------------------------------------  462 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~--~----------------------------------------  462 (497)
                      ++.+++++|.....+     +++++.++..+|.....  .                                        
T Consensus       272 ~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (814)
T 3mkq_A          272 RSWCIATHPTGRKNY-----IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS  346 (814)
T ss_dssp             SEEEEEECTTCGGGE-----EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred             cEEEEEEccCCCceE-----EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence            999999999422112     55555444455521100  0                                        


Q ss_pred             ---ccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          463 ---ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       463 ---~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                         .....+...+.+++|+|+|++||+++++.+++|.
T Consensus       347 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~  383 (814)
T 3mkq_A          347 LQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYT  383 (814)
T ss_dssp             CCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred             eeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEE
Confidence               0012244468899999999999999988899986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.3e-38  Score=295.55  Aligned_cols=321  Identities=13%  Similarity=0.127  Sum_probs=255.5

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      +.++|.+++|+|||++++++..++.+.+|......                      . .....+|.            +
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~----------------------~-~~~~~~h~------------~   52 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA----------------------R-QINTLNHG------------E   52 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE----------------------E-EEEEECCS------------S
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc----------------------c-cceeccCC------------C
Confidence            56789999999999999998877776666433211                      1 22234677            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.+++|  +|+++++++++ |+.|++|++.++.....                                          
T Consensus        53 ~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------------------------------   87 (337)
T 1gxr_A           53 VVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------------------------------   87 (337)
T ss_dssp             CCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------------------------------
T ss_pred             ceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceee------------------------------------------
Confidence            8999999  68999999998 99999999987653211                                          


Q ss_pred             ceEEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          191 ATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     ...+ ..+|...|.+++|+|+++.|+++ .|+.|++||++........      .+..|...|.+
T Consensus        88 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~~~i~~  146 (337)
T 1gxr_A           88 ---------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------ELTSSAPACYA  146 (337)
T ss_dssp             ---------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------EEECSSSCEEE
T ss_pred             ---------------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee------ecccCCCceEE
Confidence                           0100 13788899999999999999999 9999999999843321211      25678899999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ ++|++++.||.|++||+++++..    ..+.             .|...+.+++|+|++++|++++ ++.|+
T Consensus       147 ~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~  208 (337)
T 1gxr_A          147 LAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQFQ-------------GHTDGASCIDISNDGTKLWTGGLDNTVR  208 (337)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEECCCC-CEEEEEeCCCcEEEEeCCCCcee----eeee-------------cccCceEEEEECCCCCEEEEEecCCcEE
Confidence            9999999 99999999999999999987543    3333             3557899999999999999986 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||++. ++.+..+.. ...+               .+++|+|++++|++++.|+.|++||+.+++.  ..+..|..++.
T Consensus       209 ~~d~~~-~~~~~~~~~-~~~v---------------~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~v~  269 (337)
T 1gxr_A          209 SWDLRE-GRQLQQHDF-TSQI---------------FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVL  269 (337)
T ss_dssp             EEETTT-TEEEEEEEC-SSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCEE
T ss_pred             EEECCC-CceEeeecC-CCce---------------EEEEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCcccee
Confidence            999986 777766643 3322               6899999999999999999999999987643  67889999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eecCCC-CCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      .+++++  ++..     +++++.|+. ++|... ........+...|.+++|+|++++|++++.+ .+++|+
T Consensus       270 ~~~~~~--~~~~-----l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          270 SLKFAY--CGKW-----FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEECC--CCCE-----EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            999998  6666     999999999 999322 2333456788999999999999999999855 499996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.5e-39  Score=305.90  Aligned_cols=298  Identities=15%  Similarity=0.168  Sum_probs=237.9

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      .+..++++|.            +.|++++|  +|++++|++|+.|++|++||+.+++...                    
T Consensus        57 ~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~--------------------  102 (380)
T 3iz6_a           57 VCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTH--------------------  102 (380)
T ss_dssp             EEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEE--------------------
T ss_pred             EEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccce--------------------
Confidence            4567889999            99999999  6899999999999999999998765322                    


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                              .+ ..|...|.+++|+|+++.|++| .|+.+++||+....
T Consensus       103 ----------------------------------------~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a          103 ----------------------------------------AI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             ----------------------------------------EE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred             ----------------------------------------EE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence                                                    22 6888899999999999999999 99999999987322


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      ...... .....+.+|...+.++.|.|++...|++++.|+.|++||+++++..    ..+..        ....+|...+
T Consensus       142 ~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----~~~~~--------~~~~~h~~~v  208 (380)
T 3iz6_a          142 DRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI----SIFGS--------EFPSGHTADV  208 (380)
T ss_dssp             SCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE----EEECC--------CSSSSCCSCE
T ss_pred             cccCCc-cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE----EEeec--------ccCCCCccCe
Confidence            110000 0012367899999999999986478999999999999999988654    22221        0113567889


Q ss_pred             cEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933          327 SDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  404 (497)
Q Consensus       327 ~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i  404 (497)
                      .+++|++ ++++|++|+ |+.|++||++...+.+..+.+|...+               ++++|+|++++|++|+.||.|
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~i  273 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI---------------NSVKFFPDGQRFGTGSDDGTC  273 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC---------------CEEEECTTSSEEEEECSSSCE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe---------------EEEEEecCCCeEEEEcCCCeE
Confidence            9999987 788999986 59999999986567888899998865               699999999999999999999


Q ss_pred             EEEEcCCCCcceEEEeccC-------cceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcccc----cccCC
Q 010933          405 RIFSHGVGSAGGITVEAGK-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS----YNLSS  470 (497)
Q Consensus       405 ~vw~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~~~----~~~~~  470 (497)
                      ++||+.+++.+ ..+..+.       ..+.+++|+|  ++.+     +++|+.|+. ++|..  ++.....    .+|..
T Consensus       274 ~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~  345 (380)
T 3iz6_a          274 RLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSI--SGRL-----LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG  345 (380)
T ss_dssp             EEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECS--SSSE-----EEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred             EEEECCCCcEE-EEecccccccccccCceEEEEECC--CCCE-----EEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence            99999988544 4444432       2488999998  6666     999999999 99933  3332222    57899


Q ss_pred             CeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          471 KLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       471 ~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      .|++++|+|+|.+||+|+ ++.+++|.
T Consensus       346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          346 RISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            999999999999999999 55699997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.7e-38  Score=295.18  Aligned_cols=290  Identities=13%  Similarity=0.146  Sum_probs=235.4

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      +...++.+|.            +.|++++|  +|++++|++++.|++|++||..+++...                    
T Consensus        55 ~~~~~l~gH~------------~~V~~~~~--s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--------------------  100 (354)
T 2pbi_B           55 KTRRTLKGHG------------NKVLCMDW--CKDKRRIVSSSQDGKVIVWDSFTTNKEH--------------------  100 (354)
T ss_dssp             CEEEEEECCS------------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEE--------------------
T ss_pred             EEEEEecCCC------------CeEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCcce--------------------
Confidence            3456788999            99999999  6899999999999999999987655322                    


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                              .+ ..|...|.+++|+|+|..+++| .|+.+++|++....
T Consensus       101 ----------------------------------------~~-~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B          101 ----------------------------------------AV-TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             ----------------------------------------EE-ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             ----------------------------------------EE-ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence                                                    11 4677889999999999999999 99999999986321


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      .....  .....+..|...|.+++|+|++ ..|++++.|+.|++||+++++..    ..+.             +|...+
T Consensus       140 ~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~----~~~~-------------~h~~~v  199 (354)
T 2pbi_B          140 NENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL----QSFH-------------GHGADV  199 (354)
T ss_dssp             TCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCE
T ss_pred             ccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE----EEEc-------------CCCCCe
Confidence            10000  0001256799999999999999 99999999999999999987654    3443             356789


Q ss_pred             cEEEEee--CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933          327 SDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  403 (497)
Q Consensus       327 ~~~~~s~--~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  403 (497)
                      .+++|+|  +|++|++|+ |+.|++||+++ ++++..+.+|...+               ++++|+|++.+|++|+.|+.
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~  263 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDV---------------NSVRYYPSGDAFASGSDDAT  263 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCe---------------EEEEEeCCCCEEEEEeCCCe
Confidence            9999987  578999985 59999999997 88899999888765               79999999999999999999


Q ss_pred             EEEEEcCCCCcceEEEec--cCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEe
Q 010933          404 LRIFSHGVGSAGGITVEA--GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH  478 (497)
Q Consensus       404 i~vw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~  478 (497)
                      |++||+..+... ..+..  +...+.+++|++  ++.+     +++|+.|+. ++|  ..+.....+.+|...|++++|+
T Consensus       264 v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s  335 (354)
T 2pbi_B          264 CRLYDLRADREV-AIYSKESIIFGASSVDFSL--SGRL-----LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS  335 (354)
T ss_dssp             EEEEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred             EEEEECCCCcEE-EEEcCCCcccceeEEEEeC--CCCE-----EEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence            999999877443 34433  334788999998  6666     999999999 999  3445556677899999999999


Q ss_pred             cCCCEEEEEeCC-ceEEEe
Q 010933          479 PTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       479 p~~~~la~~~~~-~~~i~~  496 (497)
                      |+|++||+|+.| .+++|+
T Consensus       336 pdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          336 PDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEcCCCCEEecC
Confidence            999999999955 599995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.9e-37  Score=291.21  Aligned_cols=294  Identities=14%  Similarity=0.148  Sum_probs=227.0

Q ss_pred             ccccccccccCcccccccccccccceeEEEEEe----cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccc
Q 010933           87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  162 (497)
Q Consensus        87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~----s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  162 (497)
                      +.....+++|.            +.|++++|.+    .+++++|++|+.|++|++||+...+....              
T Consensus        11 ~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------   64 (343)
T 2xzm_R           11 VVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------   64 (343)
T ss_dssp             EEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB--------------
T ss_pred             eeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc--------------
Confidence            35567889999            8999999932    24888999999999999999875431110              


Q ss_pred             cccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 010933          163 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  241 (497)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd  241 (497)
                                                             ...+...+ .+|...|.+++|+|++.++++| .|++|++||
T Consensus        65 ---------------------------------------~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd  104 (343)
T 2xzm_R           65 ---------------------------------------FGIPHKAL-TGHNHFVSDLALSQENCFAISSSWDKTLRLWD  104 (343)
T ss_dssp             ---------------------------------------SEEEEEEE-CCCSSCEEEEEECSSTTEEEEEETTSEEEEEE
T ss_pred             ---------------------------------------cccccchh-ccCCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence                                                   11233333 7999999999999999999999 999999999


Q ss_pred             CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933          242 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  321 (497)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (497)
                      ++ .++....       +.+|...|.+++|+|++ .+|++++.|+.|++||++.....     ....          ..+
T Consensus       105 ~~-~~~~~~~-------~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~-----~~~~----------~~~  160 (343)
T 2xzm_R          105 LR-TGTTYKR-------FVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF-----SSAE----------KEN  160 (343)
T ss_dssp             TT-SSCEEEE-------EECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE-----ECCT----------TTS
T ss_pred             CC-CCcEEEE-------EcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee-----eeec----------ccC
Confidence            99 4555544       67899999999999999 99999999999999999743211     1110          124


Q ss_pred             ccccccEEEEeeCC----------CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933          322 IIASISDIKFANDG----------QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       322 ~~~~i~~~~~s~~g----------~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                      |...+.+++|+|++          .+|++++ |+.|++||..  .+....+.+|...+               ++++|+|
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v---------------~~~~~s~  223 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNV---------------NHLSISP  223 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCE---------------EEEEECT
T ss_pred             CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccc---------------eEEEECC
Confidence            56789999999987          6888875 5999999953  67777888888754               7899999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcc--cc
Q 010933          391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHE--LS  465 (497)
Q Consensus       391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~--~~  465 (497)
                      ++++|++|+.||.|++||+.........+ .+...+.+++|+|  ++++     ++++ .|+. ++|..  .....  ..
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp--~~~~-----la~~-~d~~v~iw~~~~~~~~~~~~~  294 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNP--KLQW-----VAVG-TDQGVKIFNLMTQSKAPVCTI  294 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS--SSCE-----EEEE-ESSCEEEEESSSCCSCSEEEC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECC--CCCE-----EEEE-CCCCEEEEEeCCCCCCceEEe
Confidence            99999999999999999996544443444 3556799999998  4555     5554 5555 99932  22111  11


Q ss_pred             -----------cccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          466 -----------YNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       466 -----------~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                                 .+|...|.+++|+|+|++||+|+.| .+++|.
T Consensus       295 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          295 EAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             CCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             ecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence                       2577889999999999999999955 588996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1e-37  Score=292.73  Aligned_cols=301  Identities=16%  Similarity=0.161  Sum_probs=228.3

Q ss_pred             ccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .+|.+.|++|+|+|+ +++||||+.|++|+|||+.+.+.                  ........+++|.          
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~------------------~~~~~~~~l~~h~----------   86 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET------------------NYGIPQRALRGHS----------   86 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS------------------CSEEEEEEECCCS----------
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc------------------ccceeeEEEeCCC----------
Confidence            369999999999997 68999999999999999987542                  0123456788998          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..|.+++|  +|++++|++++.|+.|++|+..............             .........+....+++++. 
T Consensus        87 --~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s~s~-  148 (340)
T 4aow_A           87 --HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-------------KDVLSVAFSSDNRQIVSGSR-  148 (340)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------------SCEEEEEECTTSSCEEEEET-
T ss_pred             --CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCC-------------CceeEEEEeecCccceeecC-
Confidence              89999999  6899999999999999999998776544322211             12223333455566666654 


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                       ++.+++|+.....   .......+|...+..++|++++  ..++++ .|+.|++||++ ..+....       +.+|..
T Consensus       149 -d~~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~-------~~~h~~  216 (340)
T 4aow_A          149 -DKTIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTN-------HIGHTG  216 (340)
T ss_dssp             -TSCEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSS
T ss_pred             -CCeEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeE-------ecCCCC
Confidence             8899999987532   2222337899999999998754  467777 99999999999 5555554       678999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  344 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~  344 (497)
                      .|++++|+|++ ++|++++.|+.|++||+++.+.+    ..+..              ...+.++.|+|++.+++++.++
T Consensus       217 ~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~~~~d~  277 (340)
T 4aow_A          217 YLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLCAATGP  277 (340)
T ss_dssp             CEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEEEEETT
T ss_pred             cEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceeeccCCC
Confidence            99999999999 99999999999999999987654    33333              3578999999999888888889


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      .|++||++. +..+..+..+.....      .......+++++|+||+++|++|+.||.|+|||+++|.
T Consensus       278 ~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          278 SIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999999985 666655543221100      00001123799999999999999999999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.4e-37  Score=290.50  Aligned_cols=288  Identities=17%  Similarity=0.257  Sum_probs=226.3

Q ss_pred             cCCcceEEEEE-----cC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933           30 QDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  103 (497)
Q Consensus        30 ~h~~~I~~i~~-----sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  103 (497)
                      +|.+.|++++|     ++ ++++||+|+.|++|+|||+...+..                .........+.+|.      
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~----------------~~~~~~~~~l~~h~------   76 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN----------------GYFGIPHKALTGHN------   76 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS----------------SBSEEEEEEECCCS------
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc----------------cccccccchhccCC------
Confidence            59999999999     77 9999999999999999999764320                00113356688998      


Q ss_pred             cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                            ..|.+++|  +|++.++++++.|++|++||+.+++..                                     
T Consensus        77 ------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~-------------------------------------  111 (343)
T 2xzm_R           77 ------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTY-------------------------------------  111 (343)
T ss_dssp             ------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEE-------------------------------------
T ss_pred             ------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEE-------------------------------------
Confidence                  88999999  688999999999999999999876532                                     


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                             ..+ .+|...|.+++|+|+++.|++| .|+.|++||+. .......     ....+|
T Consensus       112 -----------------------~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----~~~~~~  161 (343)
T 2xzm_R          112 -----------------------KRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS-----AEKENH  161 (343)
T ss_dssp             -----------------------EEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC-----CTTTSC
T ss_pred             -----------------------EEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee-----ecccCC
Confidence                                   222 6899999999999999999999 99999999998 3333221     123478


Q ss_pred             CCCeEEEEEeCCCC---------cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933          263 TEVITSAEFHPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  333 (497)
Q Consensus       263 ~~~i~~~~~~~~~~---------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  333 (497)
                      ...|.+++|+|++.         .+|++++.|+.|++||.+. +..    ..             +.+|...|.+++|+|
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~~-------------~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----YT-------------FKAHESNVNHLSISP  223 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----EE-------------EECCSSCEEEEEECT
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----EE-------------EcCccccceEEEECC
Confidence            99999999999852         5899999999999999532 211    22             234668899999999


Q ss_pred             CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          334 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       334 ~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      +|++|++|+ |+.|++||+.....+...+.. ...               +.+++|+|++++|+++ .|+.|++|++.++
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~---------------v~~v~~sp~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDILNLTYPQREFDA-GST---------------INQIAFNPKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSC---------------EEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceeecC-CCc---------------EEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence            999999986 599999999543444444432 222               2689999999887655 5788999999876


Q ss_pred             Ccce-EEEe-----------ccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          413 SAGG-ITVE-----------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       413 ~~~~-~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +... ..+.           +|...+.+++|+|  ++..     |++|+.||. ++|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~-----l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA--LGKK-----LFAGFTDGVIRTF  336 (343)
T ss_dssp             CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS--SSCC-----EEEEETTSEEEEE
T ss_pred             CCCceEEeecCcchhhhhhcCCCCceEEEEECC--CCCe-----EEEecCCceEEEE
Confidence            5432 1333           6888899999999  6666     999999999 999

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-38  Score=307.27  Aligned_cols=295  Identities=15%  Similarity=0.169  Sum_probs=218.2

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .|...|+||+|+| ++++||+|+.||.|+|||+.+++.                     .....+.+|.           
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~---------------------~~~~~~~gH~-----------  164 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK---------------------PTFIKGIGAG-----------  164 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC---------------------CEEECCCSSS-----------
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc---------------------eeEEEccCCC-----------
Confidence            4778899999999 567999999999999999987643                     3345567898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|++|+|+| .++.+|++++.|++|++||++++.......                                      
T Consensus       165 -~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------------------------------  204 (435)
T 4e54_B          165 -GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFAS--------------------------------------  204 (435)
T ss_dssp             -CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEEC--------------------------------------
T ss_pred             -CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEec--------------------------------------
Confidence             8999999943 367899999999999999997654222110                                      


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                           ...+...+.+++|+|++++|++| .||.|++||++ ++. +.       ++.+|...|.
T Consensus       205 ---------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~-~~-------~~~~h~~~v~  254 (435)
T 4e54_B          205 ---------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKE-LW-------NLRMHKKKVT  254 (435)
T ss_dssp             ---------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCB-CC-------CSBCCSSCEE
T ss_pred             ---------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cce-eE-------EEecccceEE
Confidence                                 02445567889999999999999 99999999997 332 22       3778999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      +++|+|++..+|++++.|+.|++||+++.+...    .+.          ...+|...|++++|+|+|++|++++ |+.|
T Consensus       255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----~~~----------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i  320 (435)
T 4e54_B          255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----SFL----------YSLPHRHPVNAACFSPDGARLLTTDQKSEI  320 (435)
T ss_dssp             EEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----CCS----------BCCBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred             eeeecCCCceEEEEecCcceeeEEecccccccc----eEE----------EeeeccccccceeECCCCCeeEEEcCCCEE
Confidence            999999985689999999999999998865431    111          1235678999999999999999985 5999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCCc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHGVGSA  414 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~------------~dg~i~vw~~~~~~~  414 (497)
                      ++||+.. +.....+..|.......      ..   .....|+|++.++++++            .++.|++||..+++.
T Consensus       321 ~iwd~~~-~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          321 RVYSASQ-WDCPLGLIPHPHRHFQH------LT---PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             EEEESSS-SSSEEEECCCCCCCCSS------SC---CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             EEEECCC-CccceEEeccccccccc------ce---eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            9999986 66666666554321100      00   12466777777666654            235688999887744


Q ss_pred             ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEE-EEecCCCEEEEEeCCceE
Q 010933          415 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANGNSLF  493 (497)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l-~~~p~~~~la~~~~~~~~  493 (497)
                      +.....+|                                              ...|.++ +|||+|++||+|+++.++
T Consensus       391 ~~~l~~~~----------------------------------------------~~~v~s~~~fspdg~~lasg~d~~i~  424 (435)
T 4e54_B          391 MCQLYDPE----------------------------------------------SSGISSLNEFNPMGDTLASAMGYHIL  424 (435)
T ss_dssp             EEEECCSS----------------------------------------------CCCCCCEEEECTTSSCEEEECSSEEE
T ss_pred             EEEEeCCC----------------------------------------------CCcEEEEEEECCCCCEEEEEcCCcEE
Confidence            32111222                                              2244454 678888888888777788


Q ss_pred             EEe
Q 010933          494 FHY  496 (497)
Q Consensus       494 i~~  496 (497)
                      ||+
T Consensus       425 iW~  427 (435)
T 4e54_B          425 IWS  427 (435)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            886

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=291.21  Aligned_cols=290  Identities=11%  Similarity=0.126  Sum_probs=216.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|||++|++++ |+++++||..............                                    
T Consensus        31 ~~v~~~~f--s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~------------------------------------   71 (344)
T 4gqb_B           31 RQLEAARY--RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPN------------------------------------   71 (344)
T ss_dssp             SEEEEEEE--CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTC------------------------------------
T ss_pred             CCEEEEEE--CCCCCEEEEEe-CCceEEeeceeeeeccccccCC------------------------------------
Confidence            77999999  78999888877 7889999743221111000000                                    


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                  ...+...  ..|...|.+++|+|++ .|++| .||.|++||+++.+ ......   ..+.+|...|++
T Consensus        72 ------------~~~~~~~--~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~-~~~~~~---~~~~~H~~~V~~  132 (344)
T 4gqb_B           72 ------------EGFCSAG--VQTEAGVADLTWVGER-GILVASDSGAVELWELDENE-TLIVSK---FCKYEHDDIVST  132 (344)
T ss_dssp             ------------GGGCSEE--EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTS-SCEEEE---EEEECCSSCEEE
T ss_pred             ------------cceeeee--eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCC-ceeEee---ccccCCCCCEEE
Confidence                        0001111  3566789999999986 56676 99999999998443 322211   124589999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEEe-cCeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i  346 (497)
                      ++|+|++ ++|++++.|+.|++||+++++.+    ..+.             +|...|++++|+|++. +|++++ |+.|
T Consensus       133 v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~----~~~~-------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v  194 (344)
T 4gqb_B          133 VSVLSSG-TQAVSGSKDICIKVWDLAQQVVL----SSYR-------------AHAAQVTCVAASPHKDSVFLSCSEDNRI  194 (344)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             EEECCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEc-------------CcCCceEEEEecCCCCCceeeecccccc
Confidence            9999999 99999999999999999987654    4443             4678999999999985 677775 5999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      ++||+++ +++...+..+....             .+++++|+|+ +++|++|+.||.|++||+++++.+ ..+.+|...
T Consensus       195 ~iwd~~~-~~~~~~~~~~~~~~-------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~-~~~~~h~~~  259 (344)
T 4gqb_B          195 LLWDTRC-PKPASQIGCSAPGY-------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV-LSSAVHSQC  259 (344)
T ss_dssp             EEEETTS-SSCEEECC----CC-------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC-EEEECCSSC
T ss_pred             ccccccc-cceeeeeecceeec-------------cceeeeecCCCCcceEEeccCCcEEEEECCCCcEE-EEEcCCCCC
Confidence            9999987 77777665433211             1268999995 678899999999999999988555 889999999


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eecC-CCCCcccccccCCCeEEEEEecCCC-EEEEEe-CCceEEEe
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLFFHY  496 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~-~~~~~~~~~~~~~~i~~l~~~p~~~-~la~~~-~~~~~i~~  496 (497)
                      |++++|+|. ...+     |++|+.|+. ++|. .........+|...|++|+|+|+++ +|++++ ++.+++|.
T Consensus       260 v~~v~fsp~-g~~~-----lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          260 VTGLVFSPH-SVPF-----LASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             EEEEEECSS-SSCC-----EEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEEEccC-CCeE-----EEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            999999993 2245     899999999 9993 2234455678999999999999986 567777 66699996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-37  Score=287.15  Aligned_cols=290  Identities=13%  Similarity=0.130  Sum_probs=218.7

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      +.+..+.+|.            ++|++++|  +++  +|++++.|++|++|++..+...                     
T Consensus         5 ~~~~~~~~h~------------~~v~~~~~--s~~--~las~~~D~~i~lw~~~~~~~~---------------------   47 (330)
T 2hes_X            5 NLIKSLKLYK------------EKIWSFDF--SQG--ILATGSTDRKIKLVSVKYDDFT---------------------   47 (330)
T ss_dssp             EEEEEEECCS------------SCEEEEEE--ETT--EEEEEESSSCEEEEECSSSCCE---------------------
T ss_pred             ccceeeccCC------------Cceeeecc--CCC--EEEEEcCCCEEEEEEecCCCeE---------------------
Confidence            4577788999            89999999  455  9999999999999999764311                     


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  245 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  245 (497)
                                                           ....+ ..+|...|.+++|+|++++|++| .|+.|++||++..
T Consensus        48 -------------------------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~   90 (330)
T 2hes_X           48 -------------------------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES   90 (330)
T ss_dssp             -------------------------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---
T ss_pred             -------------------------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccC
Confidence                                                 11111 13499999999999999999999 9999999998621


Q ss_pred             ------ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccc
Q 010933          246 ------DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  319 (497)
Q Consensus       246 ------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (497)
                            .....       .+.+|...|.+++|+|++ ++|++++.|+.|++||++......+....             +
T Consensus        91 ~~~~~~~~~~~-------~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~-------------~  149 (330)
T 2hes_X           91 ADRTFEMDLLA-------IIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISV-------------L  149 (330)
T ss_dssp             ----CCCEEEE-------EEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEE-------------E
T ss_pred             cCccccceeEE-------EEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEE-------------e
Confidence                  12222       267899999999999999 99999999999999999643211111122             3


Q ss_pred             ccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCC--CCE
Q 010933          320 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLH  394 (497)
Q Consensus       320 ~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~  394 (497)
                      .+|...|.+++|+|++++|++++ |+.|++||... +  +++..+.+|...+               ++++|+|+  +.+
T Consensus       150 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~  213 (330)
T 2hes_X          150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTV---------------WSSDFDKTEGVFR  213 (330)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECCSSSSCE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCcE---------------EEEEecCCCCeeE
Confidence            45678899999999999999986 59999999875 4  5778888888765               78999998  779


Q ss_pred             EEEEeCCCcEEEEEcCCCCc-------ceEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC----C
Q 010933          395 FATGSYSNLLRIFSHGVGSA-------GGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----H  461 (497)
Q Consensus       395 l~s~~~dg~i~vw~~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~----~  461 (497)
                      |++|+.|+.|++||+..+..       ....+.. |..+|.+++|++  ++ .     +++++.|+. ++|....    .
T Consensus       214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~-~-----l~s~~~dg~v~iw~~~~~~~~~  285 (330)
T 2hes_X          214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NG-L-----IASVGADGVLAVYEEVDGEWKV  285 (330)
T ss_dssp             EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT--TS-C-----EEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC--CC-E-----EEEEeCCCEEEEEEcCCCceEE
Confidence            99999999999999875421       2234444 899999999985  22 3     899999999 9994321    1


Q ss_pred             c-ccccccCC-CeEEEEEec--CCCEEEEEeCCc-eEEEe
Q 010933          462 H-ELSYNLSS-KLLHLAWHP--TTNLIACANGNS-LFFHY  496 (497)
Q Consensus       462 ~-~~~~~~~~-~i~~l~~~p--~~~~la~~~~~~-~~i~~  496 (497)
                      . .....|.. .|++++|+|  ++++||+|+.|+ +++|+
T Consensus       286 ~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~  325 (330)
T 2hes_X          286 FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS  325 (330)
T ss_dssp             EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred             EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence            1 12346776 899999999  789999999555 99997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-37  Score=283.60  Aligned_cols=256  Identities=14%  Similarity=0.221  Sum_probs=200.4

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.|+.|+|||+.+..                     .+.+.++.+|.            
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------~~~~~~l~gH~------------   53 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE------------   53 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------BCCCEEECCCS------------
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------cEEEEEEcccc------------
Confidence            599999999999999999999999999999997542                     14467889999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|++++|++..++.+|++++.|++|++||+.+++...                                          
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~------------------------------------------   91 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ------------------------------------------   91 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC------------------------------------------
T ss_pred             CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE------------------------------------------
Confidence            89999999532348899999999999999998654211                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                      +..+ .+|...|.+++|+|+  +..|++| .|+.|++||++........      .+.+|...|
T Consensus        92 ----------------~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------~~~~h~~~v  148 (297)
T 2pm7_B           92 ----------------IAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGV  148 (297)
T ss_dssp             ----------------CEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE------EEECCSSCE
T ss_pred             ----------------EEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee------eeecccCcc
Confidence                            1112 678999999999997  8899999 9999999999844322111      256899999


Q ss_pred             EEEEEeCCC------------CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC
Q 010933          267 TSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  334 (497)
Q Consensus       267 ~~~~~~~~~------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  334 (497)
                      .+++|+|++            ..+|++++.|+.|++||+++++........             +.+|...|.+++|+|+
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-------------l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEEEEECCC
T ss_pred             ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-------------ecCCCCceEEEEECCC
Confidence            999999972            168999999999999999876422111122             3457789999999998


Q ss_pred             C---CEEEEEe-cCeEEEEecCCCCce--eeee--eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          335 G---QHLLSRD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       335 g---~~l~~~~-~~~i~lwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                      +   .+|++++ |+.|++||++.....  ...+  ..|...               +++++|+|++++||+++.||.|+|
T Consensus       216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~las~~~D~~v~l  280 (297)
T 2pm7_B          216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVTL  280 (297)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEETTSCEEE
T ss_pred             CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc---------------EEEEEECCCCCEEEEEcCCCcEEE
Confidence            5   7888885 599999999752211  1222  233332               268999999999999999999999


Q ss_pred             EEcCC
Q 010933          407 FSHGV  411 (497)
Q Consensus       407 w~~~~  411 (497)
                      |+...
T Consensus       281 w~~~~  285 (297)
T 2pm7_B          281 WKENL  285 (297)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-36  Score=311.46  Aligned_cols=307  Identities=14%  Similarity=0.199  Sum_probs=231.4

Q ss_pred             ccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ..|.+.|++++|+|++ ++|++|+.|++|+||++.+...                  ........+.+|.          
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~------------------~~~~~~~~~~~h~----------  430 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK------------------AYGVAQRRLTGHS----------  430 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT------------------CSCEEEEEEECCS----------
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc------------------ccccccceecCCC----------
Confidence            3699999999999864 7999999999999999876432                  0112345678999          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..|.+++|  ++++++|++++.|++|++||+.++...                                         
T Consensus       431 --~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~-----------------------------------------  465 (694)
T 3dm0_A          431 --HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVST-----------------------------------------  465 (694)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEE-----------------------------------------
T ss_pred             --CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcce-----------------------------------------
Confidence              88999999  689999999999999999999876532                                         


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                         +.+ .+|...|.+++|+|+++.|++| .|++|++||.. ........    ....+|...|
T Consensus       466 -------------------~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~----~~~~~h~~~v  520 (694)
T 3dm0_A          466 -------------------RRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTIS----EGGEGHRDWV  520 (694)
T ss_dssp             -------------------EEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEEC----SSTTSCSSCE
T ss_pred             -------------------eEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceeec----cCCCCCCCcE
Confidence                               222 6899999999999999999999 99999999987 33333221    1245789999


Q ss_pred             EEEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          267 TSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       267 ~~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      .+++|+|++ ...|++++.|+.|++||+++++..    ..+             .+|...|++++|+|++++|++++ |+
T Consensus       521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~v~~spdg~~l~sg~~Dg  583 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----STL-------------AGHTGYVSTVAVSPDGSLCASGGKDG  583 (694)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE----EEE-------------cCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            999999986 247999999999999999886543    333             34678999999999999999986 59


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      .|++||+++ ++.+..+..+..                +.+++|+|++.+|++++ |+.|++||++++..+ ..+..+..
T Consensus       584 ~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~-~~~~~~~~  644 (694)
T 3dm0_A          584 VVLLWDLAE-GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV-EDLKVDLK  644 (694)
T ss_dssp             BCEEEETTT-TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE-EEECCCCC
T ss_pred             eEEEEECCC-CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh-hhhccccc
Confidence            999999986 777777655432                26899999998887766 456999999987443 44433322


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                      .........   +                        ......+.-.+++++|+|+|++|++|+.|+ ++||+
T Consensus       645 ~~~~~~~~~---~------------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          645 AEAEKADNS---G------------------------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG  690 (694)
T ss_dssp             -------------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccccccc---c------------------------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence            110000000   0                        000011122578999999999999999555 99997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.4e-37  Score=291.98  Aligned_cols=301  Identities=16%  Similarity=0.180  Sum_probs=226.0

Q ss_pred             ccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ..|.+.|++++|+|+| ++||+|+.||.|+|||+.+++.                     .....+.+|.          
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~h~----------  118 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK---------------------TSFIQGMGPG----------  118 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC---------------------EEEECCCSTT----------
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc---------------------ceeeecCCcC----------
Confidence            3589999999999999 9999999999999999987643                     2223334688          


Q ss_pred             cccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          108 IEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       108 ~~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                        ..|.+++|+  | ++.+|++++.|+.|++||+.+......                                      
T Consensus       119 --~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------------------------  156 (383)
T 3ei3_B          119 --DAITGMKFN--QFNTNQLFVSSIRGATTLRDFSGSVIQVF--------------------------------------  156 (383)
T ss_dssp             --CBEEEEEEE--TTEEEEEEEEETTTEEEEEETTSCEEEEE--------------------------------------
T ss_pred             --CceeEEEeC--CCCCCEEEEEeCCCEEEEEECCCCceEEE--------------------------------------
Confidence              889999994  6 678999999999999999985332111                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                          .. ...|...|.+++|+|+++.|++| .|+.|++||++ .. ....       +.+|...
T Consensus       157 --------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~-------~~~h~~~  206 (383)
T 3ei3_B          157 --------------------AK-TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFK-------EKLHKAK  206 (383)
T ss_dssp             --------------------EC-CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEE-------EECSSSC
T ss_pred             --------------------ec-cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEE-------eccCCCc
Confidence                                00 14566889999999999999999 99999999996 33 4433       5689999


Q ss_pred             eEEEEEeCCCCc-EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe-
Q 010933          266 ITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-  342 (497)
Q Consensus       266 i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-  342 (497)
                      |.+++|+|++ . +|++++.|+.|++||+++.+........+              +|...+.+++|+| ++++|++++ 
T Consensus       207 v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          207 VTHAEFNPRC-DWLMATSSVDATVKLWDLRNIKDKNSYIAEM--------------PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             EEEEEECSSC-TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--------------ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             EEEEEECCCC-CCEEEEEeCCCEEEEEeCCCCCcccceEEEe--------------cCCCceEEEEEcCCCCCEEEEEcC
Confidence            9999999999 6 99999999999999999854321111222              3567899999999 999999986 


Q ss_pred             cCeEEEEecCCCCceeeeeeeccccccc----ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933          343 YMNLKLWDIRMDSTPVATFKIHEHLRPK----LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  418 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  418 (497)
                      |+.|++||+++ ++....+..|......    +...+..+  ..+..++|+|++++  +|+.||.|++||+.+++.+ ..
T Consensus       272 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-~~  345 (383)
T 3ei3_B          272 RNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPM--YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV-HQ  345 (383)
T ss_dssp             SSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSS--SSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE-EE
T ss_pred             CCcEEEEECCC-CccccccccccccccccccceEEeccCC--CCceEEEecCCccc--ccCCCCeEEEEecCCCcee-ee
Confidence            59999999986 7777777766532110    00000000  01134677777777  7889999999999987443 33


Q ss_pred             EeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEeC
Q 010933          419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  497 (497)
Q Consensus       419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~~  497 (497)
                      +.+|.                                            +...+..++|+|++++||+++++.+++|..
T Consensus       346 l~~~~--------------------------------------------~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          346 LRDPN--------------------------------------------AAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             ECBTT--------------------------------------------BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             ecCCC--------------------------------------------CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence            33221                                            223566779999999999998888999973

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-36  Score=281.00  Aligned_cols=249  Identities=18%  Similarity=0.237  Sum_probs=203.3

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|...|++++|+|+|++|++|+.|++|+|||+.+++                       .+..+.+|.            
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-----------------------~~~~~~~h~------------  107 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----------------------TYQRFVGHK------------  107 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS------------
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----------------------eeEEEccCC------------
Confidence            599999999999999999999999999999998874                       367788999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  ++++.+|++++.|++|++||+....                                             
T Consensus       108 ~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~---------------------------------------------  140 (319)
T 3frx_A          108 SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQC---------------------------------------------  140 (319)
T ss_dssp             SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCE---------------------------------------------
T ss_pred             CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCe---------------------------------------------
Confidence            88999999  6889999999999999999986422                                             


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC------CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                      +..+ .+|...|.++.++|.      +..++++ .|+.|++||++ ..+....       +.+|
T Consensus       141 ----------------~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~-------~~~h  195 (319)
T 3frx_A          141 ----------------LATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEAD-------FIGH  195 (319)
T ss_dssp             ----------------EEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEE-------ECCC
T ss_pred             ----------------EEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhhee-------ecCC
Confidence                            2222 688999999999985      4478888 99999999998 4444443       6789


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      ...|.+++|+|++ .+|++++.||.|++||+++++..    ..+..              ...+.+++|+|++.+|+++.
T Consensus       196 ~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          196 NSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             CSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSSEEEEEE
T ss_pred             CCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCCEEEEEc
Confidence            9999999999999 99999999999999999987654    33332              25799999999999999998


Q ss_pred             cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      ++.+++|++.. ...+..+..+......       .....+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       257 ~~~i~v~~~~~-~~~~~~~~~~~~~~~~-------~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          257 ATGIKVFSLDP-QYLVDDLRPEFAGYSK-------AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             TTEEEEEEETT-EEEEEEECCCCTTCCG-------GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCcEEEEeCc-CeeeeccCcccccccc-------CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            88899999975 5555555433211000       00011368999999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-36  Score=287.41  Aligned_cols=302  Identities=14%  Similarity=0.151  Sum_probs=236.3

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      |.++|++++|+|+|++||+|+.|+.|++||+.+++                     ++.+..+.+|.            .
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------------------~~~~~~~~~h~------------~   53 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------------------WVQVHELKEHN------------G   53 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------------------EEEEEEEECCS------------S
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------------------EEeeeeecCCC------------C
Confidence            78999999999999999999999999999998763                     13577788998            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.+++|  +|++++|++++.|+.|++||+.+++....                                          
T Consensus        54 ~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------------------------------------   89 (372)
T 1k8k_C           54 QVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPT------------------------------------------   89 (372)
T ss_dssp             CEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEE------------------------------------------
T ss_pred             cccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeee------------------------------------------
Confidence            8999999  57899999999999999999977653221                                          


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCCCCCCeE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~  267 (497)
                                      .. ...|...|.+++|+|+++.|+++ .|+.|++||++....  ....      ....|...|.
T Consensus        90 ----------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~i~  146 (372)
T 1k8k_C           90 ----------------LV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH------IKKPIRSTVL  146 (372)
T ss_dssp             ----------------EE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE------ECTTCCSCEE
T ss_pred             ----------------EE-eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee------eecccCCCee
Confidence                            11 15788899999999999999999 999999999984432  1222      1467899999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc-eecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      +++|+|++ .+|++++.||.|++||++.......... .+............+.+|...+.+++|+|++++|++++ |+.
T Consensus       147 ~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  225 (372)
T 1k8k_C          147 SLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST  225 (372)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             EEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE
Confidence            99999999 9999999999999999864322110000 00000000111122446778999999999999999986 599


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC--CCc---------
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSA---------  414 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~--~~~---------  414 (497)
                      |++||+++ ++++..+..|...+               .+++|+|++++|++| .|+.|++|++.+  +..         
T Consensus       226 i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~  288 (372)
T 1k8k_C          226 VCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP  288 (372)
T ss_dssp             EEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred             EEEEECCC-CceeEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence            99999986 88899998887654               689999999988888 899999999987  310         


Q ss_pred             ----------------------ce------EEE-eccCcceeeeEeecCCCc---ccccccceeEeeccCc-eec
Q 010933          415 ----------------------GG------ITV-EAGKNENRKPILQAAPRA---RRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       415 ----------------------~~------~~~-~~~~~~v~~~~~~~~~~~---~~~~~~~l~~~~~d~~-~iw  456 (497)
                                            ..      ..+ .+|..+|+++++.+. ++   ..     |++|+.||. ++|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~g~~~~~-----l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG-GKAKCSQ-----FCTTGMDGGMSIW  357 (372)
T ss_dssp             --------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES-TTTSCSE-----EEEEETTSEEEEE
T ss_pred             ccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC-CCcceee-----EEEecCCCceEEE
Confidence                                  00      223 489999999997764 44   55     999999999 999

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1e-35  Score=289.83  Aligned_cols=305  Identities=14%  Similarity=0.229  Sum_probs=247.3

Q ss_pred             cCCcce-EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I-~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +|.+.| +|+.  ++|++||+|+.||.|++||+.+++.                       +..+.+|.           
T Consensus       116 ~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~-----------------------~~~~~~h~-----------  159 (445)
T 2ovr_B          116 GHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKC-----------------------LRTLVGHT-----------  159 (445)
T ss_dssp             CSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCE-----------------------EEECCCCS-----------
T ss_pred             ccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcE-----------------------EEEEcCCC-----------
Confidence            587765 5554  5689999999999999999987743                       67788999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|.+++|.    +..+++++.|+.|++||+.+++..                                          
T Consensus       160 -~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~------------------------------------------  192 (445)
T 2ovr_B          160 -GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECI------------------------------------------  192 (445)
T ss_dssp             -SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEE------------------------------------------
T ss_pred             -CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEE------------------------------------------
Confidence             899999993    469999999999999999876632                                          


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        ..+ .+|...|.+++++  ++.+++| .|+.|++||++ .++....       +.+|...|.
T Consensus       193 ------------------~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~-~~~~~~~-------~~~~~~~v~  243 (445)
T 2ovr_B          193 ------------------HTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE-TGQCLHV-------LMGHVAAVR  243 (445)
T ss_dssp             ------------------EEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS-SCCEEEE-------EECCSSCEE
T ss_pred             ------------------EEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC-CCcEEEE-------EcCCcccEE
Confidence                              222 6899999999995  5678888 99999999999 4555544       568999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      ++++  ++ .++++++.||.|++||+++++..    ..+.             +|...+.++.|  ++.++++++ |+.|
T Consensus       244 ~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~----~~~~-------------~~~~~v~~~~~--~~~~l~~~~~d~~i  301 (445)
T 2ovr_B          244 CVQY--DG-RRVVSGAYDFMVKVWDPETETCL----HTLQ-------------GHTNRVYSLQF--DGIHVVSGSLDTSI  301 (445)
T ss_dssp             EEEE--CS-SCEEEEETTSCEEEEEGGGTEEE----EEEC-------------CCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred             EEEE--CC-CEEEEEcCCCEEEEEECCCCcEe----EEec-------------CCCCceEEEEE--CCCEEEEEeCCCeE
Confidence            9999  56 78999999999999999987544    3333             35578999988  788899885 5999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec---cC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GK  423 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~---~~  423 (497)
                      ++||+++ ++++..+.+|...+               .++.+  ++++|++|+.||.|++||+.+++.. ..+..   |.
T Consensus       302 ~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~  362 (445)
T 2ovr_B          302 RVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQ  362 (445)
T ss_dssp             EEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCS
T ss_pred             EEEECCC-CCEEEEEcCCcccE---------------EEEEE--eCCEEEEEeCCCeEEEEECCCCcEE-EEEccCCCCC
Confidence            9999987 88888888887653               34444  6789999999999999999987554 67775   88


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccc-----cccCCCeEEEEEecCCCEEEEEeCCc----
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS----  491 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~-----~~~~~~i~~l~~~p~~~~la~~~~~~----  491 (497)
                      .++.++++.+    ..     +++|+.||. ++|  ..++.....     ..+...|.+++|+|++.+||+|+.|+    
T Consensus       363 ~~v~~~~~~~----~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~  433 (445)
T 2ovr_B          363 SAVTCLQFNK----NF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET  433 (445)
T ss_dssp             SCEEEEEECS----SE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred             CCEEEEEECC----CE-----EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence            8999999953    34     899999999 999  334433333     46788999999999999999999776    


Q ss_pred             -eEEEe
Q 010933          492 -LFFHY  496 (497)
Q Consensus       492 -~~i~~  496 (497)
                       ++||+
T Consensus       434 ~l~v~d  439 (445)
T 2ovr_B          434 KLLVLD  439 (445)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             78875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-35  Score=277.30  Aligned_cols=281  Identities=14%  Similarity=0.187  Sum_probs=231.0

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc--ccCccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLKSL  106 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~  106 (497)
                      ..|.+.|++++|+|+|++|++++ ||.|++||+.+++.                    ......+.  +|.         
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~--------------------~~~~~~~~~~~~~---------   97 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN--------------------KSPVSQLDCLNRD---------   97 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--------------------CSCSEEEECSCTT---------
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--------------------eeeeecccccCCC---------
Confidence            46899999999999999999999 99999999987642                    01122232  566         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         ..|.+++|  +|++++|++++.|+.|++||+.+++...                                       
T Consensus        98 ---~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~---------------------------------------  133 (337)
T 1gxr_A           98 ---NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRI---------------------------------------  133 (337)
T ss_dssp             ---SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EE---------------------------------------
T ss_pred             ---CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcce---------------------------------------
Confidence               88999999  6899999999999999999998765211                                       


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                         ... +..|...|.+++|+|+++.++++ .|+.|++||++ .++....       +..|...
T Consensus       134 -------------------~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~-------~~~~~~~  185 (337)
T 1gxr_A          134 -------------------KAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHTDG  185 (337)
T ss_dssp             -------------------EEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSC
T ss_pred             -------------------eee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeee-------eecccCc
Confidence                               111 26788899999999999999999 99999999998 5555554       5679999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      +.+++|+|++ .+|++++.|+.|++||+++++..    ..+.              +...+.+++|+|+++++++++ ++
T Consensus       186 i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~~~l~~~~~~~  246 (337)
T 1gxr_A          186 ASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec--------------CCCceEEEEECCCCCEEEEEcCCC
Confidence            9999999999 99999999999999999987643    2222              246799999999999999986 49


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      .|++||++. .+ ...+..|...+               .+++|+|++++|++++.||.|++|++.+++..  ....|..
T Consensus       247 ~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~  307 (337)
T 1gxr_A          247 NVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESS  307 (337)
T ss_dssp             CEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSS
T ss_pred             cEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecCCC
Confidence            999999985 44 34556666543               69999999999999999999999999987554  4456889


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ++.++++++  ++..     +++++.|+. ++|
T Consensus       308 ~v~~~~~s~--~~~~-----l~~~~~dg~i~iw  333 (337)
T 1gxr_A          308 SVLSCDISV--DDKY-----IVTGSGDKKATVY  333 (337)
T ss_dssp             CEEEEEECT--TSCE-----EEEEETTSCEEEE
T ss_pred             cEEEEEECC--CCCE-----EEEecCCCeEEEE
Confidence            999999998  5666     899999998 888

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-36  Score=314.91  Aligned_cols=397  Identities=9%  Similarity=0.061  Sum_probs=249.8

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|...|++++|+| |++||+++.|+.|+|||+.+++.                       +..+. |.           
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-----------------------~~~~~-~~-----------   98 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV-----------------------LTTVF-VP-----------   98 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE-----------------------EEEEE-CS-----------
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE-----------------------EEEEc-CC-----------
Confidence            35788999999999 88999999999999999987643                       34443 55           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCC-cccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWT  187 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  187 (497)
                       +.|++++|  +|++.+|++|+.||.|++||+.++++...........  ......+.+.+....+.++ ...++.+.. 
T Consensus        99 -~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~--~~~~~~h~~~V~sl~~sp~~~~~l~~g~~-  172 (902)
T 2oaj_A           99 -GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS--SFFPAARLSPIVSIQWNPRDIGTVLISYE-  172 (902)
T ss_dssp             -SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH--HTCSSSCCCCCCEEEEETTEEEEEEEECS-
T ss_pred             -CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceecccccc--ccccccCCCCeEEEEEccCCCCEEEEEeC-
Confidence             77999999  6899999999999999999998876531110000000  0000112233444444443 234454443 


Q ss_pred             cCcceEEEeecCCccceeeeeeccC------------------CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHA------------------HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  248 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  248 (497)
                       ++.+ +||+...   ++++.+ ..                  |...|.+++|+|+|+.|++| .|+.|++||+++ ++.
T Consensus       173 -dg~v-lWd~~~~---~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~-g~~  245 (902)
T 2oaj_A          173 -YVTL-TYSLVEN---EIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS-GHM  245 (902)
T ss_dssp             -SCEE-EEETTTT---EEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT-CCE
T ss_pred             -CCcE-EEECCCC---ceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcE
Confidence             7889 9999854   444444 33                  35789999999999999999 999999999974 333


Q ss_pred             eEEeecCCCccC-----------CCCCCeEEEEEeC----CCCcEEEE--------------------------------
Q 010933          249 FNIVDMKPSNMD-----------DLTEVITSAEFHP----IYCNLLAY--------------------------------  281 (497)
Q Consensus       249 ~~~~~~~~~~~~-----------~~~~~i~~~~~~~----~~~~~l~~--------------------------------  281 (497)
                      +....+......           .|...|.+++|++    ++..+|++                                
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  325 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK  325 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence            221000000000           1222344444421    11012222                                


Q ss_pred             --------------------------------------------EeCCCeEEEEEccCCcccccc---------------
Q 010933          282 --------------------------------------------SSSRGFVRLVDMRQSALCDHS---------------  302 (497)
Q Consensus       282 --------------------------------------------~~~dg~i~v~d~~~~~~~~~~---------------  302 (497)
                                                                  ++.||.|++||+.++..+...               
T Consensus       326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~  405 (902)
T 2oaj_A          326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT  405 (902)
T ss_dssp             HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred             hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence                                                        222344444444332111000               


Q ss_pred             ----------------------cceecccc-------cccCC---------------------c---ccc---------c
Q 010933          303 ----------------------ARILRDAA-------ESHGS---------------------K---SFF---------T  320 (497)
Q Consensus       303 ----------------------~~~~~~~~-------~~~~~---------------------~---~~~---------~  320 (497)
                                            ...+.+|.       ..+..                     .   ..+         .
T Consensus       406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~  485 (902)
T 2oaj_A          406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK  485 (902)
T ss_dssp             EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred             EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence                                  00000000       00000                     0   000         1


Q ss_pred             cccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCC--------------------------------------------
Q 010933          321 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS--------------------------------------------  355 (497)
Q Consensus       321 ~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~--------------------------------------------  355 (497)
                      +|...|.+++|+|+|++||+|+ |+.|+|||+....                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            6778999999999999999986 5999999997521                                            


Q ss_pred             ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce----EEEe-ccCcceeeeE
Q 010933          356 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG----ITVE-AGKNENRKPI  430 (497)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~-~~~~~v~~~~  430 (497)
                      +++..+.+|...+               ++++|+||| +||+|+.|++|+|||++++..+.    ..+. +|.+.|++++
T Consensus       566 ~~~~~l~~h~~~V---------------~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~  629 (902)
T 2oaj_A          566 MPSTAVHANKGKT---------------SAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIE  629 (902)
T ss_dssp             EEEEEECCCSCSE---------------EEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEE
T ss_pred             ceeEEEEcCCCcE---------------EEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEE
Confidence            1245556666544               799999999 99999999999999987763321    1232 8899999999


Q ss_pred             ee-----cC-CCcccccccceeEeeccCc-eecC-----CCCCccccccc-----CCCeEEEE-Ee--------------
Q 010933          431 LQ-----AA-PRARRSSLSNLTRGLYRQA-HENS-----SSGHHELSYNL-----SSKLLHLA-WH--------------  478 (497)
Q Consensus       431 ~~-----~~-~~~~~~~~~~l~~~~~d~~-~iw~-----~~~~~~~~~~~-----~~~i~~l~-~~--------------  478 (497)
                      |+     ++ .+++.     |++|+.|+. ++|.     .++....+.+|     ..+|..++ |+              
T Consensus       630 Fs~~~~~~Dg~~~~~-----l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~  704 (902)
T 2oaj_A          630 FVIMEYGDDGYSSIL-----MVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKM  704 (902)
T ss_dssp             EEEEECTTSSSEEEE-----EEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHH
T ss_pred             EEEEecCCCCCcceE-----EEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHH
Confidence            99     73 12456     999999999 9993     33333344444     46777776 76              


Q ss_pred             --------cCCCEEEEEeCCceEEEe
Q 010933          479 --------PTTNLIACANGNSLFFHY  496 (497)
Q Consensus       479 --------p~~~~la~~~~~~~~i~~  496 (497)
                              +++.+|| ++++.+++|+
T Consensus       705 ~~l~~~~~~~~~~l~-~~~~~ir~~~  729 (902)
T 2oaj_A          705 QNLSKGLCIPGIVLI-TGFDDIRLIT  729 (902)
T ss_dssp             HGGGGTCCCCEEEEE-ECSSEEEEEC
T ss_pred             hccCCCCCCCeEEEE-EeccceEEEe
Confidence                    4444444 4488899996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-36  Score=284.06  Aligned_cols=251  Identities=18%  Similarity=0.249  Sum_probs=193.7

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|...|++++|+|++++| +++.||.|+|||+.+++.                   .........+|+           
T Consensus        91 ~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~-------------------~~~~~~~~~~h~-----------  139 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKES-------------------LLVNKFAKYEHD-----------  139 (357)
T ss_dssp             EECSSCEEEEEEETTTEEE-EEETTSCEEEC---------------------------CCCCEEECCCS-----------
T ss_pred             CCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccce-------------------eEEEeeccCCCC-----------
Confidence            4688899999999998655 577899999999987643                   011122345787           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|++++|  +|++++|++++.|+.|++||+.+++..                                          
T Consensus       140 -~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~------------------------------------------  174 (357)
T 4g56_B          140 -DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVL------------------------------------------  174 (357)
T ss_dssp             -SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEE------------------------------------------
T ss_pred             -CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEE------------------------------------------
Confidence             88999999  689999999999999999999876633                                          


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                        ..+ .+|...|.+++|++++. .++++ .|+.|++||++. ++....     .....+...+
T Consensus       175 ------------------~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~-----~~~~~~~~~v  229 (357)
T 4g56_B          175 ------------------KSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATR-----IDFCASDTIP  229 (357)
T ss_dssp             ------------------EEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCB-----CCCTTCCSCE
T ss_pred             ------------------EEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeee-----eeeccccccc
Confidence                              223 78999999999999875 67777 999999999984 333322     1245677889


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEe-cC
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YM  344 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~  344 (497)
                      .+++|+|++..+|++++.|+.|++||+++++..    ..+..             |...|++++|+|++ ++|++|+ |+
T Consensus       230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~~-------------~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSAV-------------HSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             EEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEECC-------------CSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             cchhhhhcccceEEEeecccceeEEECCCCcEe----EEEec-------------cceeEEEEEEcCCCCCEEEEEeCCC
Confidence            999999986579999999999999999987654    34433             56789999999987 5788875 59


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      .|+|||+++ ++++..+ +|...+               ++++|+| ++++|++++.||+|++|++.+...
T Consensus       293 ~i~iwd~~~-~~~~~~~-~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          293 TVAVLDADF-SEVFRDL-SHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             CEEEECTTS-CEEEEEC-CCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EEEEEECCC-CcEeEEC-CCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            999999986 6666554 677654               7999998 899999999999999999976533

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.7e-37  Score=283.39  Aligned_cols=256  Identities=14%  Similarity=0.183  Sum_probs=198.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.|++|+|||+.++..                     ..+..+.+|.            
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~------------   57 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE------------   57 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC------------
Confidence            6999999999999999999999999999999987532                     3466788999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|++++|++..++.+|++++.|++|++||+.++...                                           
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~-------------------------------------------   94 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE-------------------------------------------   94 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-------------------------------------------
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-------------------------------------------
Confidence            8999999953235789999999999999999865421                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                     +...+ .+|...|.+++|+|+  +.+|++| .|+.|++||++........     ..+.+|...+
T Consensus        95 ---------------~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~-----~~~~~h~~~v  153 (316)
T 3bg1_A           95 ---------------KSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK-----KINNAHTIGC  153 (316)
T ss_dssp             ---------------EEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC-----CBTTSSSSCB
T ss_pred             ---------------EEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee-----eeeccccCCc
Confidence                           11222 689999999999997  7899999 9999999999843222110     2367899999


Q ss_pred             EEEEEeCCC----------------CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933          267 TSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       267 ~~~~~~~~~----------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      .+++|+|+.                ..+|++++.|+.|++||++..... .....             +.+|...|.+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~-------------l~~h~~~V~~v~  219 (316)
T 3bg1_A          154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQK-------------LEAHSDWVRDVA  219 (316)
T ss_dssp             CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEEC-------------CBCCSSCEEEEE
T ss_pred             ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeee-------------cccCCCceEEEE
Confidence            999999972                168999999999999999754211 00122             345778999999


Q ss_pred             EeeCC----CEEEEEe-cCeEEEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          331 FANDG----QHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       331 ~s~~g----~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      |+|++    ++|++++ |+.|++|+++...   .....+..|...+               ++++|+|++++||+++.|+
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEEEESSS
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEEEcCCC
Confidence            99986    7899885 5999999987511   1223445565543               7999999999999999999


Q ss_pred             cEEEEEcCC
Q 010933          403 LLRIFSHGV  411 (497)
Q Consensus       403 ~i~vw~~~~  411 (497)
                      .|++|+...
T Consensus       285 ~v~lw~~~~  293 (316)
T 3bg1_A          285 KVTLWKESV  293 (316)
T ss_dssp             CEEEEEECT
T ss_pred             eEEEEEECC
Confidence            999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-35  Score=280.87  Aligned_cols=286  Identities=12%  Similarity=0.142  Sum_probs=235.6

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|++++|+|+|++||+|+.||.|++||+.+++.                       +..+.+|.           
T Consensus        29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~~~~h~-----------   74 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------------------LGTLDGHT-----------   74 (369)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------------------EEEECCCS-----------
T ss_pred             EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------------------hhhhhhcC-----------
Confidence            36999999999999999999999999999999987643                       67788898           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  +|++.+|++++.|+.|++||+.+++...                                         
T Consensus        75 -~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------------------------  110 (369)
T 3zwl_B           75 -GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVA-----------------------------------------  110 (369)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEE-----------------------------------------
T ss_pred             -CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------------------------------
Confidence             88999999  6889999999999999999998766332                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCccCceeeEEeecC---CCcc
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMK---PSNM  259 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~---~~~~  259 (497)
                                         .+  .+...+.+++|+|+++.++++ .+     +.|++||+.............   ...+
T Consensus       111 -------------------~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~  169 (369)
T 3zwl_B          111 -------------------TW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI  169 (369)
T ss_dssp             -------------------EE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred             -------------------Ee--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence                               22  367789999999999999998 88     999999998443211111000   0123


Q ss_pred             CCCCC--CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC-cccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          260 DDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       260 ~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                      ..|..  .+.+++|+|++ .+|++++.||.|++||+++. +..    ..+.             .|...|.+++|+|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~~~-------------~~~~~v~~~~~~~~~~  231 (369)
T 3zwl_B          170 ITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DSID-------------LHEKSISDMQFSPDLT  231 (369)
T ss_dssp             ECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EEEE-------------CCSSCEEEEEECTTSS
T ss_pred             cCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EEEe-------------cCCCceeEEEECCCCC
Confidence            34555  89999999999 99999999999999999873 322    3333             3557899999999999


Q ss_pred             EEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-------------
Q 010933          337 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-------------  402 (497)
Q Consensus       337 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-------------  402 (497)
                      +|++++ ++.|++||+++ ++.+..+..... +               ..++|+|+++++++++.++             
T Consensus       232 ~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  294 (369)
T 3zwl_B          232 YFITSSRDTNSFLVDVST-LQVLKKYETDCP-L---------------NTAVITPLKEFIILGGGQEAKDVTTTSANEGK  294 (369)
T ss_dssp             EEEEEETTSEEEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECCC-------------
T ss_pred             EEEEecCCceEEEEECCC-CceeeeecCCCC-c---------------eeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence            999986 59999999986 787877773332 2               6899999999999999988             


Q ss_pred             -cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          403 -LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       403 -~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                       .+++||..+++.. ..+.+|...|.+++|+|  ++.+     |++++.|+. ++|
T Consensus       295 ~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~v~iw  342 (369)
T 3zwl_B          295 FEARFYHKIFEEEI-GRVQGHFGPLNTVAISP--QGTS-----YASGGEDGFIRLH  342 (369)
T ss_dssp             CEEEEEETTTCCEE-EEEECCSSCEEEEEECT--TSSE-----EEEEETTSEEEEE
T ss_pred             ceeEEEecCCCcch-hheecccCcEEEEEECC--CCCE-----EEEEcCCCeEEEE
Confidence             8999999988554 88899999999999999  6666     999999999 999

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=288.36  Aligned_cols=343  Identities=14%  Similarity=0.151  Sum_probs=236.1

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .|.+.|++++|+| +|++||+|+.||.|+|||+.+.+..                 ..++....+ +|.           
T Consensus        61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-----------------~~~~~~~~~-~h~-----------  111 (437)
T 3gre_A           61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-----------------EVYSSSLTY-DCS-----------  111 (437)
T ss_dssp             TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-----------------CCCSCSEEE-ECS-----------
T ss_pred             CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-----------------cccceeeec-cCC-----------
Confidence            5789999999999 9999999999999999998762110                 001112222 476           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecC---chheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                       ..|.+++|  ++++.+|++++.|+.|++||+.   .++.......                                  
T Consensus       112 -~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------------------------------  154 (437)
T 3gre_A          112 -STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC----------------------------------  154 (437)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE----------------------------------
T ss_pred             -CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeecccc----------------------------------
Confidence             88999999  6789999999999999999995   4433221100                                  


Q ss_pred             cccCcceEEEeecCCccceeeeee-ccC--CCCCeeEEE--eCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc
Q 010933          186 WTENMATKIANVGNSVHARCQKVY-PHA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--h~~~v~~~~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                        .++..+ +..  +...+.++.  +++++..|++| .|+.|++||++ .++....       +
T Consensus       155 ------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~-------~  208 (437)
T 3gre_A          155 ------------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQI-------I  208 (437)
T ss_dssp             ------------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEE-------E
T ss_pred             ------------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEE-------E
Confidence                              011111 122  667788888  57899999999 99999999998 4555544       3


Q ss_pred             CC--CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe----e
Q 010933          260 DD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA----N  333 (497)
Q Consensus       260 ~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~  333 (497)
                      ..  |...|++++|+|++ .+|++++.||.|++||+++++..    ..+..            .|...|.+++|+    |
T Consensus       209 ~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~s~  271 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWSF------------GDHAPITHVEVCQFYGK  271 (437)
T ss_dssp             ECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEBC------------TTCEEEEEEEECTTTCT
T ss_pred             ccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEec------------CCCCceEEEEeccccCC
Confidence            44  88999999999999 99999999999999999987544    33321            234679999665    4


Q ss_pred             CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccC-----------CCCCccceeEEEEcCCCCEEEEEeCC
Q 010933          334 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY-----------NNDSIFDKFECSVSGDGLHFATGSYS  401 (497)
Q Consensus       334 ~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~~~~~l~s~~~d  401 (497)
                      ++.+|++++ |+.|++||+++ ++.+..+.+|...+.......           .......+++++|+ ++++|++|+.|
T Consensus       272 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d  349 (437)
T 3gre_A          272 NSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT  349 (437)
T ss_dssp             TEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred             CccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence            677999985 59999999986 888888887765443221100           00122234789999 78999999999


Q ss_pred             CcEEEEEcCCCCcceEEEeccCcc---eeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEe
Q 010933          402 NLLRIFSHGVGSAGGITVEAGKNE---NRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH  478 (497)
Q Consensus       402 g~i~vw~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~  478 (497)
                      |.|++||+.+++.. ..+.+|...   .....+.+.  ..+     ++.. .+  .  ...........|...|++++|+
T Consensus       350 ~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~-~~--~--~~~~~~~~~~~h~~~I~~i~~~  416 (437)
T 3gre_A          350 SSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTAN--LTM-----LLRK-MK--R--TSTHSVDDSLYHHDIINSISTC  416 (437)
T ss_dssp             TEEEEEETTCGGGC-EEEECC--CCCEEEEEEEETT--EEE-----EEEE-CC-----------------CCCEEEEEEE
T ss_pred             CeEEEEECCCcccc-eEEecccccCceEEEEEeecc--eEE-----EEEe-cc--c--ccccccCcccccccceeeEeee
Confidence            99999999988554 777776443   222223221  111     1111 00  0  1111223344688999999999


Q ss_pred             cC--CCEEEEEeCC-ceEEEe
Q 010933          479 PT--TNLIACANGN-SLFFHY  496 (497)
Q Consensus       479 p~--~~~la~~~~~-~~~i~~  496 (497)
                      ++  +.+|++|+.+ .++||+
T Consensus       417 ~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          417 EVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ESSSSEEEEEEETTSCEEEEC
T ss_pred             ccCCceEEEEEcCCceEEEeC
Confidence            99  7799999955 499985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.6e-37  Score=291.23  Aligned_cols=262  Identities=12%  Similarity=0.133  Sum_probs=196.1

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      +.++|++++|+|+|++||+|+.|+.|+|||+.++.                     ++....+.+|.            .
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---------------------~~~~~~~~~h~------------~   56 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---------------------WKHARTFSDHD------------K   56 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---------------------EEECCCBCCCS------------S
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---------------------eEEEEEEecCC------------c
Confidence            46799999999999999999999999999998762                     13467788998            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.+++|  +|++++|++++.|+.|++||+.+++..                                            
T Consensus        57 ~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~--------------------------------------------   90 (377)
T 3dwl_C           57 IVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTW--------------------------------------------   90 (377)
T ss_dssp             CEEEEEE--CTTTCCEEEEETTSSEEEC------CC--------------------------------------------
T ss_pred             eEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCce--------------------------------------------
Confidence            9999999  688999999999999999999876510                                            


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCC-CCCCe
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD-LTEVI  266 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~-~~~~i  266 (497)
                                   .+... +.+|...|.+++|+|+++.|++| .|+.|++||++....  ....       +.. |...|
T Consensus        91 -------------~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~h~~~v  149 (377)
T 3dwl_C           91 -------------KQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH-------LKRPLRSTI  149 (377)
T ss_dssp             -------------CCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE-------ECSSCCSCE
T ss_pred             -------------eeeeE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE-------eecccCCCe
Confidence                         01111 26889999999999999999999 999999999984332  2333       445 99999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc-cccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      .+++|+|++ .+|++++.|+.|++||++.+.............. ........+ +|...|.+++|+|++++|++++ |+
T Consensus       150 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~  227 (377)
T 3dwl_C          150 LSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS  227 (377)
T ss_dssp             EEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT
T ss_pred             EEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC
Confidence            999999999 9999999999999999975442211000000000 000011123 6788999999999999999986 59


Q ss_pred             eEEEEecCCCCce----eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          345 NLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       345 ~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      .|++||+.+ ++.    +..+.+|...+               ++++|+|++++|++|+.|+.+ +|+...
T Consensus       228 ~i~iwd~~~-~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          228 SVTIAYPSA-PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             EEC-CEECS-TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             cEEEEECCC-CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            999999987 655    77888887754               699999999999999877666 666653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.6e-35  Score=287.01  Aligned_cols=315  Identities=12%  Similarity=0.227  Sum_probs=242.4

Q ss_pred             cCCcc-eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~-I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +|.+. +.|+.|  ++++|++|+.||.|++||+.+++                       .+..+.+|.           
T Consensus       119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~-----------  162 (464)
T 3v7d_B          119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD-----------  162 (464)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred             CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC-----------
Confidence            57776 467666  56799999999999999998764                       377788999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       +.|.+++|  ++++ .+++++.||+|++||+.+++..                                          
T Consensus       163 -~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~------------------------------------------  196 (464)
T 3v7d_B          163 -GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCT------------------------------------------  196 (464)
T ss_dssp             -SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEE------------------------------------------
T ss_pred             -cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEE------------------------------------------
Confidence             99999999  4565 9999999999999999876632                                          


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeC--CCCCEEEEE-cCCeEEEEeCccCceeeEEeecC----------
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMK----------  255 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~----------  255 (497)
                                        ..+ .+|...|.+++|+  ++++.+++| .|+.|++||++........ ...          
T Consensus       197 ------------------~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~  256 (464)
T 3v7d_B          197 ------------------HVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-GEEHDYPLVFHTP  256 (464)
T ss_dssp             ------------------EEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-------CCSSEEESCG
T ss_pred             ------------------EEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc-cccCCcceEeecc
Confidence                              222 6899999999998  578899999 9999999999843321110 000          


Q ss_pred             ------CCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933          256 ------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  329 (497)
Q Consensus       256 ------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  329 (497)
                            ...+.+|...+.++  ++++ .++++++.|+.|++||+++++..    ..+.             +|...+.++
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~----~~~~-------------~~~~~v~~~  316 (464)
T 3v7d_B          257 EENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILS-------------GHTDRIYST  316 (464)
T ss_dssp             GGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEE
T ss_pred             CCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEec-------------CCCCCEEEE
Confidence                  01256788888877  5667 89999999999999999987644    3333             356789999


Q ss_pred             EEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          330 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       330 ~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      +|+|+++++++|+ |+.|++||+++ ++++..+.+|...+               .+++|+  +++|++++.||.|++||
T Consensus       317 ~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          317 IYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcE---------------EEEEEc--CCEEEEEeCCCcEEEEE
Confidence            9999999999986 49999999987 88999999988765               678886  58999999999999999


Q ss_pred             cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCccc-ccccCCCeEEEEEecCCCEE
Q 010933          409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL-SYNLSSKLLHLAWHPTTNLI  484 (497)
Q Consensus       409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~-~~~~~~~i~~l~~~p~~~~l  484 (497)
                      +.++...  ....+...+..+++++  ++.+     +++|+ ++. ++|  ..++.... ...+...|.+++|+ ...++
T Consensus       379 ~~~~~~~--~~~~~~~~~~~~~~~~--~~~~-----l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~  447 (464)
T 3v7d_B          379 ANDYSRK--FSYHHTNLSAITTFYV--SDNI-----LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLV  447 (464)
T ss_dssp             TTTCCEE--EEEECTTCCCEEEEEE--CSSE-----EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEE
T ss_pred             CCCCcee--eeecCCCCccEEEEEe--CCCE-----EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEE
Confidence            9987443  2224666777888888  5555     78877 777 999  44444443 56788999999997 33444


Q ss_pred             EEEeCCceEEE
Q 010933          485 ACANGNSLFFH  495 (497)
Q Consensus       485 a~~~~~~~~i~  495 (497)
                      +++++++..+|
T Consensus       448 ~~~~~~g~~~i  458 (464)
T 3v7d_B          448 AAVEKDGQSFL  458 (464)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEeCCeEEE
Confidence            45555654433

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.3e-36  Score=285.28  Aligned_cols=257  Identities=16%  Similarity=0.266  Sum_probs=202.6

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ..|++++|+|+|++||+|+.|+.|+|||+.+++                       .+..+.+|.            ..|
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v  168 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----------------------IVMILQGHE------------QDI  168 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------SCE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----------------------EEEEEccCC------------CCE
Confidence            459999999999999999999999999998764                       366788999            889


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .+++|  +|++.+|++++.|++|++||+.+++...                                             
T Consensus       169 ~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~---------------------------------------------  201 (393)
T 1erj_A          169 YSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSL---------------------------------------------  201 (393)
T ss_dssp             EEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE---------------------------------------------
T ss_pred             EEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEE---------------------------------------------
Confidence            99999  6899999999999999999998766322                                             


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                     .  ..+...+.+++|+| ++++|++| .|+.|++||++ .+.....+........+|...|.+++
T Consensus       202 ---------------~--~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~v~  263 (393)
T 1erj_A          202 ---------------T--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVV  263 (393)
T ss_dssp             ---------------E--EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEEEEE
T ss_pred             ---------------E--EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCCEEEEE
Confidence                           1  13456789999999 89999999 99999999998 45454443222223467999999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw  349 (497)
                      |+|++ .+|++++.|+.|++||+++......    ... .........+.+|...|.+++|+|++++|++|+ |+.|++|
T Consensus       264 ~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~----~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          264 FTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  337 (393)
T ss_dssp             ECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             ECCCC-CEEEEEeCCCEEEEEECCCCCCccc----ccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            99999 9999999999999999987543210    000 000111223567888999999999999999986 5999999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC------CCCEEEEEeCCCcEEEEEcCC
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      |+.+ ++++..+.+|...+               .+++|++      ++++|++|+.||.|+||++..
T Consensus       338 d~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          338 DKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9987 88899999998865               6888876      688999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-36  Score=288.83  Aligned_cols=318  Identities=14%  Similarity=0.179  Sum_probs=242.5

Q ss_pred             cchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE   92 (497)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (497)
                      .|++...-. ......+.|...|++++|+|+|++||+|+.||.|++||+.+...                   ..+.+..
T Consensus        49 iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~~~~~~  108 (416)
T 2pm9_A           49 LWSLLAADS-EKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AINSMAR  108 (416)
T ss_dssp             EEESSSGGG-CSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CCCEEEE
T ss_pred             EEEccCCCC-CcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cccchhh
Confidence            566543211 12334456899999999999999999999999999999987321                   1134667


Q ss_pred             ccccCcccccccccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933           93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  171 (497)
Q Consensus        93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (497)
                      +.+|.            ..|.+++|  +|+ +.+|++++.|+.|++||+.+++........                   
T Consensus       109 ~~~h~------------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------------------  155 (416)
T 2pm9_A          109 FSNHS------------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP-------------------  155 (416)
T ss_dssp             CCCSS------------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC-------------------
T ss_pred             ccCCc------------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccc-------------------
Confidence            78898            88999999  566 789999999999999999876521100000                   


Q ss_pred             cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceee
Q 010933          172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF  249 (497)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~  249 (497)
                                                      ..... ...|...|.+++|+|+ +..|+++ .|+.|++||++ .++..
T Consensus       156 --------------------------------~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~  201 (416)
T 2pm9_A          156 --------------------------------LTPGQ-SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-AKKEV  201 (416)
T ss_dssp             --------------------------------BCCCC-SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-TTEEE
T ss_pred             --------------------------------ccccc-ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-CCCcc
Confidence                                            00000 1578899999999998 7889998 99999999999 45555


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      ..+... ....+|...|.+++|+|++..+|++++.|+   .|++||++++....   ..+.            .+|...+
T Consensus       202 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---~~~~------------~~~~~~v  265 (416)
T 2pm9_A          202 IHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---QTLN------------QGHQKGI  265 (416)
T ss_dssp             EEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS---BCCC------------SCCSSCE
T ss_pred             eEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc---EEee------------cCccCce
Confidence            442111 111234789999999999757999999998   99999999863221   2222            0456789


Q ss_pred             cEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCc
Q 010933          327 SDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNL  403 (497)
Q Consensus       327 ~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~  403 (497)
                      .+++|+| ++++|++++ |+.|++||+++ ++++..+..|...+               ++++|+|++ ++|++++.||.
T Consensus       266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          266 LSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             EEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEEECCSSSE
T ss_pred             eEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEEEEecCCc
Confidence            9999999 899999986 59999999987 88899999888764               689999999 89999999999


Q ss_pred             EEEEEcCCCCcceEE----------------------------------EeccCcceeeeEeecCCCcccccccceeEee
Q 010933          404 LRIFSHGVGSAGGIT----------------------------------VEAGKNENRKPILQAAPRARRSSLSNLTRGL  449 (497)
Q Consensus       404 i~vw~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  449 (497)
                      |++|++.+.......                                  ...|..++..++|++  ++++     +++|+
T Consensus       330 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~-----la~~~  402 (416)
T 2pm9_A          330 IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF--GGKL-----VQITP  402 (416)
T ss_dssp             EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET--TTEE-----ECBCT
T ss_pred             EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee--CCeE-----EEEeC
Confidence            999999886533111                                  011677888999999  7777     99999


Q ss_pred             ccCc-eec
Q 010933          450 YRQA-HEN  456 (497)
Q Consensus       450 ~d~~-~iw  456 (497)
                      .|+. ++|
T Consensus       403 ~d~~v~~w  410 (416)
T 2pm9_A          403 DGKGVSIT  410 (416)
T ss_dssp             TSSCBCCB
T ss_pred             CCCeEEEE
Confidence            9999 999

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.2e-35  Score=283.16  Aligned_cols=300  Identities=10%  Similarity=0.081  Sum_probs=232.1

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|  ++||+|+.||.|+|||+.+++.                 ...+.....+.+|.            
T Consensus        14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~~~~h~------------   62 (397)
T 1sq9_A           14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN-----------------ENPKDKSYSHFVHK------------   62 (397)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT-----------------CCGGGGEEEEECCT------------
T ss_pred             hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc-----------------ccCCCcceEEecCC------------
Confidence            5999999999999  7999999999999999988642                 11234567778898            


Q ss_pred             cceeEEEEEecCC----C---CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          110 EKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       110 ~~i~~l~~~~s~~----~---~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                      ..|.+++|+  ++    +   .+|++++.|+.|++|++.+++....                                  
T Consensus        63 ~~v~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~----------------------------------  106 (397)
T 1sq9_A           63 SGLHHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDETKK----------------------------------  106 (397)
T ss_dssp             TCEEEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC----------------------------------
T ss_pred             CcEEEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCccccc----------------------------------
Confidence            889999995  55    7   8999999999999999987663100                                  


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCC-----CCCeeEEEeC----CCCCE-EEEE-cCCeEEEEeCccC-----c
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAH-----DFNINSISNN----SDCET-FVSA-DDLRINLWNLEIS-----D  246 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~-l~~~-~d~~i~iwd~~~~-----~  246 (497)
                                           .....+ ..|     ...|.+++|+    |+++. |+++ .|+.|++||++..     .
T Consensus       107 ---------------------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A          107 ---------------------VIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             ---------------------EEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             ---------------------ccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence                                 001122 556     5899999999    99999 9998 9999999999840     2


Q ss_pred             eeeE-----EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933          247 QCFN-----IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  321 (497)
Q Consensus       247 ~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (497)
                      ....     .+.........|...|.+++|+|++  +|++++.|+.|++||+++++..    ..+..          ..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~----~~~~~----------~~~  228 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES----------QHS  228 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC----------CC-
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee----EEEec----------ccc
Confidence            2222     1100000014588999999999997  8999999999999999987543    33322          011


Q ss_pred             c---cccccEEEEeeCCCEEEEE-ec---CeEEEEecCCCCceeeeeee-------------cccccccccccCCCCCcc
Q 010933          322 I---IASISDIKFANDGQHLLSR-DY---MNLKLWDIRMDSTPVATFKI-------------HEHLRPKLCDLYNNDSIF  381 (497)
Q Consensus       322 ~---~~~i~~~~~s~~g~~l~~~-~~---~~i~lwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  381 (497)
                      |   ...+.+++|+|++++|+++ .+   +.|++||+++ ++.+..+..             |...+             
T Consensus       229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v-------------  294 (397)
T 1sq9_A          229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV-------------  294 (397)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE-------------
T ss_pred             ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE-------------
Confidence            4   5789999999999999987 56   8999999986 788888887             66643             


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe------cc---------------CcceeeeEeecCC-----
Q 010933          382 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE------AG---------------KNENRKPILQAAP-----  435 (497)
Q Consensus       382 ~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~-----  435 (497)
                        .+++|+|++++|++++.||.|++||+.+++. ...+.      +|               ..+|+.++|++..     
T Consensus       295 --~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          295 --MSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             --EEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             --EEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence              6999999999999999999999999998854 47788      77               9999999999942     


Q ss_pred             ---CcccccccceeEeeccCc-eec
Q 010933          436 ---RARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       436 ---~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                         ++..     |++++.|+. ++|
T Consensus       372 ~~~~~~~-----l~s~~~dg~i~iw  391 (397)
T 1sq9_A          372 GADLNES-----LCCVCLDRSIRWF  391 (397)
T ss_dssp             TCTTSCE-----EEEEETTTEEEEE
T ss_pred             cccccce-----EEEecCCCcEEEE
Confidence               0145     899999999 999

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=268.25  Aligned_cols=273  Identities=14%  Similarity=0.107  Sum_probs=217.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++| |++++||+|+.||.|++||+.+++                       ....+..|.            
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~------------   59 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ------------   59 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS------------
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC------------
Confidence            59999999999 999999999999999999997763                       356677887            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|++.+|++++.|+.|++|++......                                           
T Consensus        60 ~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~-------------------------------------------   94 (313)
T 3odt_A           60 GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGE-------------------------------------------   94 (313)
T ss_dssp             SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTS-------------------------------------------
T ss_pred             ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCC-------------------------------------------
Confidence            88999999  578999999999999999998764311                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                    +++..+ .+|...|.+++|  +++.++++ .|+.|++||.   +.....       +..|...+.+
T Consensus        95 --------------~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~-------~~~~~~~v~~  147 (313)
T 3odt_A           95 --------------DPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYN-------LQAHNASVWD  147 (313)
T ss_dssp             --------------CC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEE-------EECCSSCEEE
T ss_pred             --------------Ccccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEe-------cccCCCceeE
Confidence                          122222 689999999999  57789998 9999999992   333333       5679999999


Q ss_pred             EEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933          269 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL  346 (497)
Q Consensus       269 ~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i  346 (497)
                      ++|.| ++ .++++++.||.|++||....  .    ..+..            .|...+.+++|+|++. ++++ .++.|
T Consensus       148 ~~~~~~~~-~~l~~~~~d~~i~i~d~~~~--~----~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~dg~i  207 (313)
T 3odt_A          148 AKVVSFSE-NKFLTASADKTIKLWQNDKV--I----KTFSG------------IHNDVVRHLAVVDDGH-FISCSNDGLI  207 (313)
T ss_dssp             EEEEETTT-TEEEEEETTSCEEEEETTEE--E----EEECS------------SCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred             EEEccCCC-CEEEEEECCCCEEEEecCce--E----EEEec------------cCcccEEEEEEcCCCe-EEEccCCCeE
Confidence            99998 66 99999999999999994432  1    22222            1457899999999998 5555 56999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  426 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  426 (497)
                      ++||+++ ++++..+..|...+               ++++|+|++ .|++++.||.|++||+.+++.. ..+..|..++
T Consensus       208 ~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~i  269 (313)
T 3odt_A          208 KLVDMHT-GDVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLK-QVITLPAISI  269 (313)
T ss_dssp             EEEETTT-CCEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTCCEE-EEEECSSSCE
T ss_pred             EEEECCc-hhhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCCcee-EEEeccCceE
Confidence            9999987 88899998888764               799999999 6899999999999999988543 6677777777


Q ss_pred             eeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ..+++++  +++      +++++.|+. ++|
T Consensus       270 ~~~~~~~--~~~------~~~~~~dg~i~iw  292 (313)
T 3odt_A          270 WSVDCMS--NGD------IIVGSSDNLVRIF  292 (313)
T ss_dssp             EEEEECT--TSC------EEEEETTSCEEEE
T ss_pred             EEEEEcc--CCC------EEEEeCCCcEEEE
Confidence            7777766  222      345666666 666

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.8e-34  Score=270.69  Aligned_cols=288  Identities=15%  Similarity=0.174  Sum_probs=226.6

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                      ....+|+||.            +.|++|+|  +|+ +++|++||.|++|++||+...+...                   
T Consensus        29 ~l~~tL~GH~------------~~V~~v~~--sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------------------   75 (340)
T 4aow_A           29 TLRGTLKGHN------------GWVTQIAT--TPQFPDMILSASRDKTIIMWKLTRDETNY-------------------   75 (340)
T ss_dssp             EEEEEECCCS------------SCEEEEEE--CTTCTTEEEEEETTSCEEEEEECCSSSCS-------------------
T ss_pred             EEEEEECCcc------------CCEEEEEE--eCCCCCEEEEEcCCCeEEEEECCCCCccc-------------------
Confidence            5567899999            99999999  565 6799999999999999998654211                   


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  245 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  245 (497)
                                                          ..+.+.+ .+|...|.+++|+|++++|++| .|+.|++|+.. .
T Consensus        76 ------------------------------------~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~-~  117 (340)
T 4aow_A           76 ------------------------------------GIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-T  117 (340)
T ss_dssp             ------------------------------------EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-T
T ss_pred             ------------------------------------ceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceEEeec-c
Confidence                                                1233444 7999999999999999999999 99999999998 4


Q ss_pred             ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          246 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      ......       ...+...+..+.+++++ .+|++++.|+.+++||+......     ...           ..+|...
T Consensus       118 ~~~~~~-------~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~-----~~~-----------~~~~~~~  173 (340)
T 4aow_A          118 GTTTRR-------FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY-----TVQ-----------DESHSEW  173 (340)
T ss_dssp             TEEEEE-------EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EEC-----------SSSCSSC
T ss_pred             cceeee-------ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE-----EEE-----------eccccCc
Confidence            444333       45677888999999999 99999999999999998765322     111           2345678


Q ss_pred             ccEEEEeeCC--CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          326 ISDIKFANDG--QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       326 i~~~~~s~~g--~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      +..++|++++  .++++++ |+.|++||++. ++.+..+.+|...+               ++++|+|++++|++|+.||
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYL---------------NTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTC
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcE---------------EEEEECCCCCEEEEEeCCC
Confidence            9999998865  4666664 59999999986 88888999888764               7899999999999999999


Q ss_pred             cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCC-----------cccccccCC
Q 010933          403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----------HELSYNLSS  470 (497)
Q Consensus       403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~-----------~~~~~~~~~  470 (497)
                      .|++||+.+.+.+ ..+. +...+..++++|  ++.      +++++.|+. ++|.....           ......|..
T Consensus       238 ~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~--~~~------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~  307 (340)
T 4aow_A          238 QAMLWDLNEGKHL-YTLD-GGDIINALCFSP--NRY------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP  307 (340)
T ss_dssp             EEEEEETTTTEEE-EEEE-CSSCEEEEEECS--SSS------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred             eEEEEEeccCcee-eeec-CCceEEeeecCC--CCc------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence            9999999987443 4554 446889999988  333      567777888 99933211           112346888


Q ss_pred             CeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          471 KLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       471 ~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      .|++++|+|++++||+|+.| .++||+
T Consensus       308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          308 QCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            99999999999999999955 599997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-34  Score=271.97  Aligned_cols=293  Identities=14%  Similarity=0.158  Sum_probs=235.8

Q ss_pred             ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      ....+.+|.            +.|++++|  +|++++|++++.|+.|++||+.+++..                      
T Consensus        24 ~~~~l~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------   67 (369)
T 3zwl_B           24 KAIKLTGHE------------RPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGERL----------------------   67 (369)
T ss_dssp             EEEEEECCS------------SCEEEEEE--CTTSCEEEEEESSSCEEEEETTTCCEE----------------------
T ss_pred             ccEEEEEee------------ceEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCchhh----------------------
Confidence            345578888            99999999  689999999999999999999876532                      


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  247 (497)
                                                            ..+ .+|...|.+++|+|+++.|+++ .|+.|++||+. .++
T Consensus        68 --------------------------------------~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~  107 (369)
T 3zwl_B           68 --------------------------------------GTL-DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQ  107 (369)
T ss_dssp             --------------------------------------EEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCC
T ss_pred             --------------------------------------hhh-hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCc
Confidence                                                  222 6899999999999999999999 99999999999 455


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                      ....       +. +...+.+++|+|++ .+|++++.+     +.|++||++.+....    .+..  ........+..|
T Consensus       108 ~~~~-------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~----~~~~--~~~~~~~~~~~~  172 (369)
T 3zwl_B          108 CVAT-------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH----ELTK--VSEEPIHKIITH  172 (369)
T ss_dssp             EEEE-------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC----CEEE--ECSSCSEEEECC
T ss_pred             EEEE-------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce----eecc--cccceeeeccCC
Confidence            5544       22 77899999999999 999999998     999999998875432    1111  011112223344


Q ss_pred             cc--cccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          323 IA--SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       323 ~~--~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      ..  .+.+++|+|++++|++++. +.|++||++...+.+..+..|...+               .+++|+|++++|++++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI---------------SDMQFSPDLTYFITSS  237 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE---------------EEEEECTTSSEEEEEE
T ss_pred             cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce---------------eEEEECCCCCEEEEec
Confidence            44  8999999999999999864 9999999986567888888887754               6899999999999999


Q ss_pred             CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccC--------------c-eec--CCCCCc
Q 010933          400 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ--------------A-HEN--SSSGHH  462 (497)
Q Consensus       400 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~--------------~-~iw--~~~~~~  462 (497)
                      .||.|++||+.+++.. ..+. +..++..++++|  ++..     +++++.++              . .+|  ..++..
T Consensus       238 ~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~-----l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  308 (369)
T 3zwl_B          238 RDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITP--LKEF-----IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI  308 (369)
T ss_dssp             TTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECS--SSSE-----EEEEECCC-------------CEEEEEETTTCCEE
T ss_pred             CCceEEEEECCCCcee-eeec-CCCCceeEEecC--CCce-----EEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence            9999999999987544 4454 788999999998  5666     88888777              4 666  344445


Q ss_pred             ccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933          463 ELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       463 ~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      ....+|...|++++|+|++++||+++.| .+++|.
T Consensus       309 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          309 GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            5667899999999999999999999954 599996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=280.22  Aligned_cols=257  Identities=15%  Similarity=0.217  Sum_probs=204.3

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.||.|+|||+....                     .+....+.+|.            
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~~h~------------   55 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE------------   55 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCS------------
T ss_pred             CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------------ceeeeEecCCC------------
Confidence            599999999999999999999999999999997542                     24567788998            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|++++|++..++.+|++++.|+.|++||+.+++..                                           
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------------------------------------   92 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-------------------------------------------   92 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE-------------------------------------------
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee-------------------------------------------
Confidence            8999999954334899999999999999999876522                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                     .+..+ ..|...|.+++|+|+  ++.|+++ .|+.|++||++........      .+..|...|
T Consensus        93 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~v  150 (379)
T 3jrp_A           93 ---------------QIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGV  150 (379)
T ss_dssp             ---------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEECCTTCE
T ss_pred             ---------------Eeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecCCCCce
Confidence                           11222 678999999999999  9999999 9999999999844322221      256799999


Q ss_pred             EEEEEeC-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933          267 TSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  333 (497)
Q Consensus       267 ~~~~~~~-------------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  333 (497)
                      .+++|+|             ++ .+|++++.|+.|++||++++.........             +.+|...|.+++|+|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRDVAWSP  216 (379)
T ss_dssp             EEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEEEEECC
T ss_pred             EEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEE-------------EecccCcEeEEEECC
Confidence            9999999             57 89999999999999999876533211122             344678899999999


Q ss_pred             C---CCEEEEEe-cCeEEEEecCCCCce--eeee--eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          334 D---GQHLLSRD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       334 ~---g~~l~~~~-~~~i~lwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      +   +++|++++ |+.|++||++.....  ...+  ..|...               +++++|+|++++|++++.||.|+
T Consensus       217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~i~  281 (379)
T 3jrp_A          217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVT  281 (379)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEESSSSEE
T ss_pred             CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEecCCCcEE
Confidence            9   89999986 599999999863211  1111  223332               26899999999999999999999


Q ss_pred             EEEcCCCC
Q 010933          406 IFSHGVGS  413 (497)
Q Consensus       406 vw~~~~~~  413 (497)
                      +|++....
T Consensus       282 iw~~~~~~  289 (379)
T 3jrp_A          282 LWKENLEG  289 (379)
T ss_dssp             EEEEEETT
T ss_pred             EEeCCCCC
Confidence            99998653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=277.46  Aligned_cols=348  Identities=16%  Similarity=0.204  Sum_probs=227.8

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .|.+.|++++|+| +|++||+|+.||.|++||+.+++.........          ..........+|.           
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----------   99 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----------VCSIGRDHPDVHR-----------   99 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------EEEECTTCTTCCS-----------
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------cccccccccccCC-----------
Confidence            4999999999999 99999999999999999998865310000000          0000011123576           


Q ss_pred             ccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          109 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       109 ~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                       ..|.+++|  +| ++.+|++++.|+.|++||+.+++....                                       
T Consensus       100 -~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------------------------------------  137 (408)
T 4a11_B          100 -YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADV---------------------------------------  137 (408)
T ss_dssp             -SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEE---------------------------------------
T ss_pred             -CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCcccee---------------------------------------
Confidence             88999999  46 677999999999999999987663321                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                             ..+...+.++.+++   ++..++++ .|+.|++||++ .+.....       +..|.
T Consensus       138 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~-------~~~~~  186 (408)
T 4a11_B          138 -----------------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHI-------LQGHR  186 (408)
T ss_dssp             -----------------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEE-------ECCCC
T ss_pred             -----------------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-Ccceeee-------ecCCC
Confidence                                   13566788899987   44589998 99999999998 4444443       67899


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc--cccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--ESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      ..|.+++|+|++..+|++++.||.|++||++++....   ..+..+.  ........+.+|...|.+++|+|++++|+++
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc---ccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            9999999999993479999999999999998875332   2222111  1111223346788999999999999999998


Q ss_pred             e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          342 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       342 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      + ++.|++||+.+ ++....+..+......       ...   ........+..+++++.|+.|++||+.+++.+ ..+.
T Consensus       264 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~  331 (408)
T 4a11_B          264 GTDNRMRLWNSSN-GENTLVNYGKVCNNSK-------KGL---KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-TMLK  331 (408)
T ss_dssp             ETTSCEEEEETTT-CCBCCCCCCCCCCCCS-------SCC---CCEECCSSSSCEEEEEETTEEEEEETTTCCEE-EEEC
T ss_pred             cCCCeEEEEECCC-Cccceecccccccccc-------ccc---eeEEecCCCceEEEEecCCEEEEEECcCCcce-eeec
Confidence            5 59999999986 5554444333221100       000   11222334566777888999999999988554 8899


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcccccccCCCeEEEEEecCCC--EEEEEeCCceEEE
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTN--LIACANGNSLFFH  495 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~~~~~~~~~i~~l~~~p~~~--~la~~~~~~~~i~  495 (497)
                      +|..+|.+++|+|  ++..     |++|+.||. ++|..  .+.........   ....+.|...  +...+.++.+.+|
T Consensus       332 ~~~~~v~~~~~s~--~~~~-----l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W  401 (408)
T 4a11_B          332 GHYKTVDCCVFQS--NFQE-----LYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAW  401 (408)
T ss_dssp             CCSSCEEEEEEET--TTTE-----EEEEETTSCEEEEEECC---------------------------------------
T ss_pred             cCCCeEEEEEEcC--CCCE-----EEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeec
Confidence            9999999999999  6666     999999999 99933  22222111111   1223444322  2233346778888


Q ss_pred             e
Q 010933          496 Y  496 (497)
Q Consensus       496 ~  496 (497)
                      +
T Consensus       402 ~  402 (408)
T 4a11_B          402 S  402 (408)
T ss_dssp             -
T ss_pred             C
Confidence            6

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-34  Score=274.23  Aligned_cols=306  Identities=14%  Similarity=0.152  Sum_probs=229.5

Q ss_pred             cCCcceEEEEEcCC----CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        30 ~h~~~I~~i~~sp~----g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      +|.++|++++|+|+    ...+++++.++.|++||+.+++.                       +..+..|..       
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------------------~~~~~~~~~-------   65 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------------------IRLLQSYVD-------   65 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------------------EEEEEEEEC-------
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------------------EEeeeeccc-------
Confidence            59999999999984    45666677778999999986542                       233332220       


Q ss_pred             cccccceeEEEEEecCC--CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          106 LEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      ..+...|++++|+|..+  +.+|++++.|+.|++||+.+++..                                     
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-------------------------------------  108 (366)
T 3k26_A           66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI-------------------------------------  108 (366)
T ss_dssp             SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE-------------------------------------
T ss_pred             cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe-------------------------------------
Confidence            00127899999975322  679999999999999999876532                                     


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                             ..+ .+|...|.+++|+| +++.|++| .|+.|++||++ .++....+    ..+.+
T Consensus       109 -----------------------~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~----~~~~~  159 (366)
T 3k26_A          109 -----------------------KHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIF----GGVEG  159 (366)
T ss_dssp             -----------------------EEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEE----CSTTS
T ss_pred             -----------------------eee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEe----ccccc
Confidence                                   222 68999999999999 99999999 99999999998 45555442    12368


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc-----------cccccCCccccccccccccEEE
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-----------AAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      |...|.+++|+|++ .+|++++.||.|++||+++++...........           .............|...|.+++
T Consensus       160 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          160 HRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             ccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            99999999999999 99999999999999999987543111000000           0000011122334788999999


Q ss_pred             EeeCCCEEEEEe-cCeEEEEecCCCCc-------------eeeeeeecccccccccccCCCCCccceeEEEEcCC--CCE
Q 010933          331 FANDGQHLLSRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLH  394 (497)
Q Consensus       331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~  394 (497)
                      |+  +++|++++ ++.|++||+.....             .+..+..|...+               ++++|+|+  +++
T Consensus       239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~~  301 (366)
T 3k26_A          239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSMDFWQKM  301 (366)
T ss_dssp             EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEECTTSSE
T ss_pred             Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcCCCCCcE
Confidence            99  77888885 59999999986322             255556665543               58999999  999


Q ss_pred             EEEEeCCCcEEEEEcCCCCcc---eEEEecc--CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          395 FATGSYSNLLRIFSHGVGSAG---GITVEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       395 l~s~~~dg~i~vw~~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      |++|+.||.|++||+.+++..   ...+.+|  ..+|.+++|++  ++.+     |++++.|+. ++|
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~i~iw  362 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR--DSSI-----LIAVCDDASIWRW  362 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSEEEEE
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC--CCCe-----EEEEeCCCEEEEE
Confidence            999999999999999987543   3477777  79999999999  6666     999999999 999

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5e-35  Score=276.32  Aligned_cols=286  Identities=13%  Similarity=0.154  Sum_probs=221.2

Q ss_pred             cCCcceEEEEEcCCCCEE-EEeec---CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~l-asg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      +|.+.|++++|+|+++.+ ++|+.   ||.|+|||+.+++.                     .. ....+|.        
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~---------------------~~-~~~~~~~--------   65 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL---------------------KL-LREIEKA--------   65 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE---------------------EE-EEEEEES--------
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc---------------------cc-eeeeccc--------
Confidence            489999999999999654 56665   89999999987643                     11 1122576        


Q ss_pred             cccccceeEEEEEecCC---CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          106 LEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~---~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                          ..|.+++|  +|+   +.+|++++.|+.|++||+.+++.                                     
T Consensus        66 ----~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------------------------------  102 (357)
T 3i2n_A           66 ----KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEM-------------------------------------  102 (357)
T ss_dssp             ----SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSS-------------------------------------
T ss_pred             ----CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCc-------------------------------------
Confidence                88999999  566   69999999999999999987551                                     


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEE------eCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  255 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  255 (497)
                                            ++..+ .+|...|.++.      |+|+++.|+++ .|+.|++||++........+...
T Consensus       103 ----------------------~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A          103 ----------------------PVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             ----------------------CSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             ----------------------cEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence                                  11222 68899999994      57899999999 99999999999544344442110


Q ss_pred             CCccCCCCCCeEEEE----EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEE
Q 010933          256 PSNMDDLTEVITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  331 (497)
Q Consensus       256 ~~~~~~~~~~i~~~~----~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  331 (497)
                         ...+...+.+++    |+|++ .+|++++.||.|++||+++++..    ..              ..|...+.+++|
T Consensus       160 ---~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~--------------~~~~~~v~~~~~  217 (357)
T 3i2n_A          160 ---QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----WE--------------TNIKNGVCSLEF  217 (357)
T ss_dssp             ---TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----EE--------------EECSSCEEEEEE
T ss_pred             ---CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----ee--------------cCCCCceEEEEc
Confidence               111234888888    67888 99999999999999999987542    11              224578999999


Q ss_pred             ee---CCCEEEEEe-cCeEEEEecCCCCceeeeee-----ecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCC
Q 010933          332 AN---DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS  401 (497)
Q Consensus       332 s~---~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~d  401 (497)
                      +|   ++.+|++++ ++.|++||++. ++.+..+.     +|...+               ++++|+|+++ +|++++.|
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~~~~d  281 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFLTAGGA  281 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEEEEETT
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEEEEeCC
Confidence            99   899999986 59999999986 55555444     666543               7999999998 89999999


Q ss_pred             CcEEEEEcCCCCc------------------ceEEEeccCcceeeeEeecCCCccccccccee-EeeccCc-eec
Q 010933          402 NLLRIFSHGVGSA------------------GGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQA-HEN  456 (497)
Q Consensus       402 g~i~vw~~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~d~~-~iw  456 (497)
                      |.|++||+.++..                  ....+.+|..+|.+++|+|  ++..     ++ +++.|+. ++|
T Consensus       282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP--DKRG-----LCVCSSFDQTVRVL  349 (357)
T ss_dssp             SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS--SSTT-----EEEEEETTSEEEEE
T ss_pred             CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC--CCCe-----EEEEecCCCcEEEE
Confidence            9999999986532                  3567889999999999999  6666     77 7999999 999

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.1e-35  Score=277.12  Aligned_cols=295  Identities=9%  Similarity=0.040  Sum_probs=208.0

Q ss_pred             cceEEEEEcCCCCEEEEeecC-------CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           33 DIVSAIEFDKTGDYLAVGDRG-------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      -||+|++|+|||++||+|+.+       +.|++|++..+...... .+            .......+.+|+        
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-~~------------~~~~~~~l~~~~--------   73 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-QF------------HILSEFALEDND--------   73 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-HE------------EEEEEEECCTTS--------
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-ee------------eeeeEEEccCCC--------
Confidence            489999999999999999753       36999999875431000 00            001112456677        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeC-----------CccEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  174 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (497)
                          ..|.++++    ++..++++..           |+.+++|++.......                           
T Consensus        74 ----~~v~s~~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~---------------------------  118 (365)
T 4h5i_A           74 ----DSPTAIDA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL---------------------------  118 (365)
T ss_dssp             ----CCCCEEEE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE---------------------------
T ss_pred             ----CceEEEEe----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE---------------------------
Confidence                77888887    2446776654           4555555554322100                           


Q ss_pred             CCCcccccccccccCcceEEEeecCCccceeeee-eccCCCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCccCceeeE
Q 010933          175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFN  250 (497)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~  250 (497)
                                        +...        .... ....+...+.+++|+|||+++++  + .|++|++||++ ..+...
T Consensus       119 ------------------~~~~--------~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-~~~~~~  171 (365)
T 4h5i_A          119 ------------------EFLT--------SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-DLTEKF  171 (365)
T ss_dssp             ------------------EEEE--------EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-TTEEEE
T ss_pred             ------------------EEee--------eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-CCcEEE
Confidence                              0000        0000 01345667899999999999864  4 68999999999 454444


Q ss_pred             EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933          251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      .       + .|...|.+++|+|+| ++|++++.+ .+++|+..+++....  ..             ...|...+.+++
T Consensus       172 ~-------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~--~~-------------~~~~~~~v~~v~  226 (365)
T 4h5i_A          172 E-------I-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIAR--KT-------------DFDKNWSLSKIN  226 (365)
T ss_dssp             E-------E-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEE--EC-------------CCCTTEEEEEEE
T ss_pred             E-------e-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceee--ee-------------cCCCCCCEEEEE
Confidence            3       2 377789999999999 999998855 466777666543211  11             123557899999


Q ss_pred             EeeCCCEEEEEe-cC----eEEEEecCCCCce----eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933          331 FANDGQHLLSRD-YM----NLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  401 (497)
Q Consensus       331 ~s~~g~~l~~~~-~~----~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  401 (497)
                      |+|+++++++++ ++    .+++|++.. ...    ...+.+|...+               ++++|+|||++||+|+.|
T Consensus       227 fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~V---------------~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          227 FIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRFKGI---------------TSMDVDMKGELAVLASND  290 (365)
T ss_dssp             EEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSCSCE---------------EEEEECTTSCEEEEEETT
T ss_pred             EcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCCCCe---------------EeEEECCCCCceEEEcCC
Confidence            999999999874 33    688899875 322    23455565543               799999999999999999


Q ss_pred             CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC
Q 010933          402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  458 (497)
Q Consensus       402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~  458 (497)
                      +.|+|||+++++.+...+++|..+|++++|+|  ++++     |++|+.|+. +||..
T Consensus       291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp--dg~~-----laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISP--DSTY-----VASVSAANTIHIIKL  341 (365)
T ss_dssp             SCEEEEETTTTEEEEEETTSSSSCEEEEEECT--TSCE-----EEEEETTSEEEEEEC
T ss_pred             CEEEEEECCCCcEEEEecCcccCCEEEEEECC--CCCE-----EEEEeCCCeEEEEEc
Confidence            99999999998666455689999999999999  7777     999999999 99943

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=280.65  Aligned_cols=292  Identities=15%  Similarity=0.177  Sum_probs=230.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      |.+.|++++|+|+|++||+|+.||.|++||. ++                       ..+..+.+|.            .
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~-----------------------~~~~~~~~~~------------~  150 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TG-----------------------ALLNVLNFHR------------A  150 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TS-----------------------CEEEEECCCC------------S
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CC-----------------------CeeeeccCCC------------c
Confidence            6789999999999999999999999999993 33                       3366778888            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.+++|  +|++.+|++++.|+.|++||+.+++............                                  
T Consensus       151 ~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------  194 (425)
T 1r5m_A          151 PIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG----------------------------------  194 (425)
T ss_dssp             CEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred             cEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc----------------------------------
Confidence            8999999  6899999999999999999998876544321111000                                  


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                  ..............+.+++|++++. ++++ .++.|++||++ .+.....       +..|...|.++
T Consensus       195 ------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~-~~~~~~~-------~~~~~~~i~~~  253 (425)
T 1r5m_A          195 ------------SSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQIT-EKTPTGK-------LIGHHGPISVL  253 (425)
T ss_dssp             -----------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETT-CSSCSEE-------ECCCSSCEEEE
T ss_pred             ------------cceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcC-CCceeee-------eccCCCceEEE
Confidence                        0000000023334488899998864 6666 99999999999 4444443       56799999999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l  348 (497)
                      +|+|++ .+|++++.|+.|++||+++++..    ..+.             .|...+.+++|+|++ ++++++ ++.|++
T Consensus       254 ~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i  314 (425)
T 1r5m_A          254 EFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NCFY-------------GHSQSIVSASWVGDD-KVISCSMDGSVRL  314 (425)
T ss_dssp             EEETTT-TEEEEEETTSCEEEECSSSBSCS----EEEC-------------CCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred             EECCCC-CEEEEEcCCCEEEEEECCCCccc----eEec-------------CCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence            999999 89999999999999999987544    3333             345789999999999 777775 599999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC---------------
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS---------------  413 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~---------------  413 (497)
                      ||+++ ++.+..+..|...+               .+++|+|++++|++++.||.|++||+.++.               
T Consensus       315 ~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  378 (425)
T 1r5m_A          315 WSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN  378 (425)
T ss_dssp             EETTT-TEEEEEEECTTCCE---------------EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred             EECCC-CcEeEecccCCccE---------------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence            99986 88888888877654               689999999999999999999999998764               


Q ss_pred             ----cceEEEeccCc--ceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          414 ----AGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       414 ----~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                          .....+..|..  ++.+++|++  ++.+     |++++.|+. ++|.
T Consensus       379 ~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          379 PLPIPLYASYQSSQDNDYIFDLSWNC--AGNK-----ISVAYSLQEGSVVA  422 (425)
T ss_dssp             CEECCEEEEECCTTCCCCEEEEEECT--TSSE-----EEEEESSSCCEEEE
T ss_pred             cccchhhhhhcCcccCCceEEEEccC--CCce-----EEEEecCceEEEEe
Confidence                14578889977  999999998  6666     999999998 9993

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.6e-34  Score=290.02  Aligned_cols=343  Identities=15%  Similarity=0.132  Sum_probs=263.2

Q ss_pred             cCCcc-eEEEEEcC--CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QDVDI-VSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h~~~-I~~i~~sp--~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      +|.+. |++++|+|  +|++||+|+.||.|+|||+.+++..               ..........+.+|.         
T Consensus        61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~---------------~~~~~~~~~~~~~~~---------  116 (615)
T 1pgu_A           61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES---------------NSVEVNVKSEFQVLA---------  116 (615)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG---------------TEEEEEEEEEEECCS---------
T ss_pred             cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc---------------ccccccccchhhccc---------
Confidence            58899 99999999  9999999999999999999754100               000114456777888         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCC----ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG  181 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  181 (497)
                         ..|.+++|  +|++++|++++.+    +.|.+||.  ++......             .+.+.+....+.++.. .+
T Consensus       117 ---~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l  176 (615)
T 1pgu_A          117 ---GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS-------------GHSQRINACHLKQSRPMRS  176 (615)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTT--CCEEEECC-------------SCSSCEEEEEECSSSSCEE
T ss_pred             ---ccEEEEEE--eCCCCEEEEeccCCCCccEEEEEEC--CCcceeee-------------cCCccEEEEEECCCCCcEE
Confidence               88999999  6899999999987    78999983  22222111             1223344455555655 45


Q ss_pred             cccccccCcceEEEeecCCccceeeeeeccCCCC---CeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933          182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP  256 (497)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  256 (497)
                      +.++.  ++.+++|+...   .+++..+ .+|..   .|.+++|+|+ ++.|+++ .|+.|++||++ .++....     
T Consensus       177 ~~~~~--d~~v~vwd~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~-----  244 (615)
T 1pgu_A          177 MTVGD--DGSVVFYQGPP---FKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFLKY-----  244 (615)
T ss_dssp             EEEET--TTEEEEEETTT---BEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEEEE-----
T ss_pred             EEEeC--CCcEEEEeCCC---cceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-CCCEeEE-----
Confidence            55554  88999999774   4566665 78988   9999999999 9999999 99999999998 4555544     


Q ss_pred             Ccc-C---CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc------------------------------
Q 010933          257 SNM-D---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS------------------------------  302 (497)
Q Consensus       257 ~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------------------------------  302 (497)
                        + .   .|...|.+++|+ ++ .+|++++.|+.|++||+++++.....                              
T Consensus       245 --~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  320 (615)
T 1pgu_A          245 --IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT  320 (615)
T ss_dssp             --CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred             --ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence              4 4   799999999999 88 99999999999999999865422100                              


Q ss_pred             -----------cceeccccc------------------------------------------------------------
Q 010933          303 -----------ARILRDAAE------------------------------------------------------------  311 (497)
Q Consensus       303 -----------~~~~~~~~~------------------------------------------------------------  311 (497)
                                 ...+..|..                                                            
T Consensus       321 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~  400 (615)
T 1pgu_A          321 LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI  400 (615)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             EEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEc
Confidence                       000000000                                                            


Q ss_pred             -----------------------------------c---------------------------c-CC-----------c-
Q 010933          312 -----------------------------------S---------------------------H-GS-----------K-  316 (497)
Q Consensus       312 -----------------------------------~---------------------------~-~~-----------~-  316 (497)
                                                         .                           . ..           . 
T Consensus       401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~  480 (615)
T 1pgu_A          401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS  480 (615)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred             ccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccc
Confidence                                               0                           0 00           0 


Q ss_pred             -cccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeee-cccccccccccCCCCCccceeEEEEcC---
Q 010933          317 -SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSG---  390 (497)
Q Consensus       317 -~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~---  390 (497)
                       ..+.+|...|.+++|+|++++|++++ |+.|++||+.+ ++.+..+.+ |...+               ++++|+|   
T Consensus       481 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v---------------~~~~~sp~~~  544 (615)
T 1pgu_A          481 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI---------------NAISWKPAEK  544 (615)
T ss_dssp             EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE---------------EEEEECCCC-
T ss_pred             ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce---------------eEEEEcCccc
Confidence             23456788899999999999999986 59999999986 888888877 77654               7999999   


Q ss_pred             -------CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          391 -------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       391 -------~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                             ++++|++++.||.|++||+.++......+.+|..+|.+++|++.       .. |++++.|+. ++|
T Consensus       545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~-------~~-l~s~~~d~~v~iw  610 (615)
T 1pgu_A          545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-------ST-LVSSGADACIKRW  610 (615)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET-------TE-EEEEETTSCEEEE
T ss_pred             cccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC-------CC-eEEecCCceEEEE
Confidence                   99999999999999999999885666889999999999999995       23 799999998 999

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-34  Score=302.17  Aligned_cols=365  Identities=14%  Similarity=0.139  Sum_probs=271.8

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|++++|+|+|++||+|+.||.|++||+.+++.                       +..+.+|.            
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~~~~~~~------------   97 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------------------VVDFEAHP------------   97 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------EEEEECCS------------
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEecCC------------
Confidence            4889999999999999999999999999999988743                       66778898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCch-heeccccCCCCCccccccccccccCccccCCCC-Ccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEWT  187 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  187 (497)
                      +.|.+++|  +|++.+|++++.|+.|++|++.++ .......             .+.+.+....+.+ +...++.++. 
T Consensus        98 ~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~~l~~~~~-  161 (814)
T 3mkq_A           98 DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-------------GHEHFVMCVAFNPKDPSTFASGCL-  161 (814)
T ss_dssp             SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-------------CCSSCEEEEEEETTEEEEEEEEET-
T ss_pred             CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-------------CCCCcEEEEEEEcCCCCEEEEEeC-
Confidence            88999999  689999999999999999999876 3222211             1223344444444 4556666655 


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                       ++.+++|++...   .....+...+...+.+++|+|  ++..++++ .|+.|++||++ .+.....       +.+|..
T Consensus       162 -dg~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-------~~~~~~  229 (814)
T 3mkq_A          162 -DRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT-------LEGHMS  229 (814)
T ss_dssp             -TSEEEEEETTCS---SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT-TTEEEEE-------EECCSS
T ss_pred             -CCeEEEEECCCC---cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC-CCcEEEE-------EcCCCC
Confidence             789999998754   333444345568999999999  99999999 99999999998 4555554       567899


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC--EEEEEe
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRD  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~  342 (497)
                      .|.+++|+|++ .+|++++.||.|++||+.+++..    ..+..             |...+.+++|+|++.  +++++.
T Consensus       230 ~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~  291 (814)
T 3mkq_A          230 NVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTLNV-------------GLERSWCIATHPTGRKNYIASGF  291 (814)
T ss_dssp             CEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EEECC-------------SSSSEEEEEECTTCGGGEEEEEE
T ss_pred             CEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEeec-------------CCCcEEEEEEccCCCceEEEEEe
Confidence            99999999999 99999999999999999987644    33333             346899999999987  577788


Q ss_pred             cCeEEEEecCCCCceeeeeeeccccccc-----------------ccccCC-----------CCCccceeEEEEcCCCCE
Q 010933          343 YMNLKLWDIRMDSTPVATFKIHEHLRPK-----------------LCDLYN-----------NDSIFDKFECSVSGDGLH  394 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~s~~~~~  394 (497)
                      ++.+.+|++.. ......+......+..                 ......           ......+.+++|+|+|++
T Consensus       292 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  370 (814)
T 3mkq_A          292 DNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF  370 (814)
T ss_dssp             TTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE
T ss_pred             CCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE
Confidence            88999999865 3322222100000000                 000000           001112368999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeE
Q 010933          395 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLL  473 (497)
Q Consensus       395 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~  473 (497)
                      |++++ |+.+.+|++.....      .+.+++.+++|+|  ++..     +++++.++. .+|.      ...++...|.
T Consensus       371 la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~sp--dg~~-----la~~~~~g~v~l~~------~~~~~~~~v~  430 (814)
T 3mkq_A          371 VTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGP--DSNS-----YALIDETGQIKYYK------NFKEVTSWSV  430 (814)
T ss_dssp             EEEEE-TTEEEEEETTTTEE------EEEEECSEEEECT--TSSC-----EEEECTTCCEEEEE------TTEECTTCCC
T ss_pred             EEEec-CCEEEEEECccccc------cCCCceEEEEEeC--CCCe-----EEEEeCCCcEEEEE------CCCCccceEE
Confidence            99998 89999999864421      2356788999998  6666     999999998 9992      3345667888


Q ss_pred             EEEEecCC---CEEEEEe-CCceEEEe
Q 010933          474 HLAWHPTT---NLIACAN-GNSLFFHY  496 (497)
Q Consensus       474 ~l~~~p~~---~~la~~~-~~~~~i~~  496 (497)
                      +++|+|++   ..|++++ ++.+++|.
T Consensus       431 ~~~~s~dg~~~~~l~~~~~d~~v~~~d  457 (814)
T 3mkq_A          431 PMHSAIDRLFSGALLGVKSDGFVYFFD  457 (814)
T ss_dssp             CCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred             cCCcCccceecceEEEEecCCEEEEEE
Confidence            99999998   4566555 67799996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.9e-34  Score=273.52  Aligned_cols=278  Identities=13%  Similarity=0.187  Sum_probs=226.9

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      .++.|+||++ ++||+|. |++|+|||..+++.                     ..+..+.+|.            ..|+
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~---------------------~~~~~~~~~~------------~~V~  151 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDI---------------------LQLLQMEQPG------------EYIS  151 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCE---------------------EEEEECCSTT------------CCEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCE---------------------EEEEEecCCC------------CcEE
Confidence            4578999985 5888875 89999999998854                     2223345666            8899


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      +|+|  +|++.+|++|+.|+.|++||+.+++..                                               
T Consensus       152 sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~-----------------------------------------------  182 (420)
T 4gga_A          152 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRL-----------------------------------------------  182 (420)
T ss_dssp             EEEE--CTTSSEEEEEETTSCEEEEETTTTEEE-----------------------------------------------
T ss_pred             EEEE--CCCCCEEEEEECCCeEEEEEcCCCcEE-----------------------------------------------
Confidence            9999  689999999999999999999877633                                               


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  272 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  272 (497)
                                   +.+ .+|...+.+++++  +..+++| .|+.+++||..........       +.+|...+..+.++
T Consensus       183 -------------~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~  239 (420)
T 4gga_A          183 -------------RNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWA  239 (420)
T ss_dssp             -------------EEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEEC
T ss_pred             -------------EEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeec
Confidence                         222 7899999888775  6789999 9999999999855555544       67899999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE---ecCeEEE
Q 010933          273 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR---DYMNLKL  348 (497)
Q Consensus       273 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~---~~~~i~l  348 (497)
                      |++ .++++++.|+.+++||..+++.........             ..|...|.+++|+|++. +++++   .|+.|++
T Consensus       240 ~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-------------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          240 PDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-------------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             TTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE-------------CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             CCC-CeeeeeeccccceEEeeccccccceeeeee-------------cccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence            999 999999999999999998875432222222             34568899999999765 55554   2599999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcceEEEeccCcce
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNEN  426 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v  426 (497)
                      ||+.+ ++++..+..+...                .++.|+|+++.|++++  .|+.|+|||+.+++.+ ..+.+|.++|
T Consensus       306 wd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-~~l~gH~~~V  367 (420)
T 4gga_A          306 WNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRV  367 (420)
T ss_dssp             EETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCE
T ss_pred             EeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-EEEcCCCCCE
Confidence            99997 8888888776653                5899999999988765  7999999999998554 8899999999


Q ss_pred             eeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      ++++|+|  ++..     |++|+.|+. ++|.
T Consensus       368 ~~l~~sp--dg~~-----l~S~s~D~tvriWd  392 (420)
T 4gga_A          368 LSLTMSP--DGAT-----VASAAADETLRLWR  392 (420)
T ss_dssp             EEEEECT--TSSC-----EEEEETTTEEEEEC
T ss_pred             EEEEEcC--CCCE-----EEEEecCCeEEEEE
Confidence            9999999  6777     999999999 9994

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-35  Score=279.94  Aligned_cols=320  Identities=8%  Similarity=-0.004  Sum_probs=222.9

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...|.+++|||||+++|+++.|++|+  |.+.++                          .+.+|.            ..
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------------------------~l~gh~------------~~   54 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------------------------DINCNS------------KN   54 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------------------------CCSSBG------------GG
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc--------------------------eecCCC------------cc
Confidence            47899999999999999999999999  754432                          235666            56


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |++++|  +|+|       .++.+.+|+.+.......               .++..+....+++++..+++++.  ++.
T Consensus        55 v~~V~F--sPdg-------~~~~~~~~~~~~~~~~~~---------------~~~~~V~~vawSPdG~~LAs~s~--dg~  108 (588)
T 2j04_A           55 LFHVKE--FPLE-------FENKLDFELAQQNGLLNS---------------QPVCYPRVCKPSPIDDWMAVLSN--NGN  108 (588)
T ss_dssp             TEEEEE--ECCC-------CCCTTTTSCCCSSCSSTT---------------SCSCCEEEEEECSSSSCEEEEET--TSC
T ss_pred             EEEEEE--CCCC-------CcceEEEEeCCCceEeec---------------CCCCcEEEEEECCCCCEEEEEeC--CCc
Confidence            666666  3454       344444443322111110               11234555555666666666654  666


Q ss_pred             eEEEeecCCccceeeeeeccCCCC-----CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce------eeEEeecCCCcc
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDF-----NINSISNNSDCETFVSA-DDLRINLWNLEISDQ------CFNIVDMKPSNM  259 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~------~~~~~~~~~~~~  259 (497)
                      +++|+...     ++..+ . |..     .+.+++|+|+|+.|++| .||+|++||+..+..      .+..+..   ..
T Consensus       109 V~iwd~~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~---~~  178 (588)
T 2j04_A          109 VSVFKDNK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL---SD  178 (588)
T ss_dssp             EEEEETTE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC---SC
T ss_pred             EEEEeCCc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec---cc
Confidence            66666432     33333 4 554     59999999999999999 999999999984321      2333211   13


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      .+|...|.+++|+|+|   +++++.|+.|++||+.++... ...+.+.            .+|...|.+++|+  |++||
T Consensus       179 ~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~------------~~h~~~V~svaFs--g~~LA  240 (588)
T 2j04_A          179 AGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ------------NASRRKITDLKIV--DYKVV  240 (588)
T ss_dssp             TTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE------------CCCSSCCCCEEEE--TTEEE
T ss_pred             ccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec------------ccccCcEEEEEEE--CCEEE
Confidence            6788999999999986   889999999999999876521 0001221            1345789999999  68999


Q ss_pred             EEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE--cCCCCEEEEEeCCCcEEEEEcCCCCcceE
Q 010933          340 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGSYSNLLRIFSHGVGSAGGI  417 (497)
Q Consensus       340 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~~~dg~i~vw~~~~~~~~~~  417 (497)
                      +++++.|++||+.. ++......+|...+               .+++|  +||++.|+++++||. ++|..+       
T Consensus       241 Sa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~edG~-klw~~d-------  296 (588)
T 2j04_A          241 LTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNKTSY-KVLLED-------  296 (588)
T ss_dssp             EECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSSCEE-EEEESS-------
T ss_pred             EEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcCCCC-EEEeec-------
Confidence            98889999999984 44423333777754               68999  999999999999999 999987       


Q ss_pred             EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933          418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~  488 (497)
                                .+.++|  ++..     +++.  |+. ++|...............|.+++|+|||+.+|+++
T Consensus       297 ----------~~~~sp--d~~l-----~a~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          297 ----------ELHVTA--DNII-----APYL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             ----------SEEEEC--CCSS-----HHHH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred             ----------cEEECC--CceE-----EEEc--CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence                      144666  5554     4543  777 99954333233444467899999999999999987

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.1e-34  Score=270.44  Aligned_cols=285  Identities=10%  Similarity=0.027  Sum_probs=225.7

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.+.|++++|+|+|++|++|+.||.|+||++.+++.                    ......+.+|.            
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------------------~~~~~~~~~~~------------   56 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------------NVDLLQSLRYK------------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------------EEEEEEEEECS------------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------------------cccceeeeecC------------
Confidence            5899999999999999999999999999999987641                    01233445787            


Q ss_pred             cceeEEEEEecCCCC-EEEEEeCCccEEEeec-CchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          110 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      ..|.+++|+  +++. +|++++.|+.|++|++ .+++...                                        
T Consensus        57 ~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~----------------------------------------   94 (342)
T 1yfq_A           57 HPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSFQA----------------------------------------   94 (342)
T ss_dssp             SCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred             CceEEEEEC--CCCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence            889999994  6789 9999999999999999 7665321                                        


Q ss_pred             cCcceEEEeecCCccceeeeeeccC--CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC--------ceeeEEeecCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIVDMKP  256 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~--------~~~~~~~~~~~  256 (497)
                                            +.+  |...|.+++|+| ++.++++ .|+.|++||++..        .+...      
T Consensus        95 ----------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------  145 (342)
T 1yfq_A           95 ----------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN------  145 (342)
T ss_dssp             ----------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS------
T ss_pred             ----------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee------
Confidence                                  156  899999999999 9999999 9999999998831        22222      


Q ss_pred             CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEee-C
Q 010933          257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-D  334 (497)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  334 (497)
                       .+. |...|.+++|+|++   +++++.|+.|++||+++ +....   ....            ..|...+.+++|+| +
T Consensus       146 -~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~~~------------~~~~~~i~~i~~~~~~  205 (342)
T 1yfq_A          146 -NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TIEE------------SGLKYQIRDVALLPKE  205 (342)
T ss_dssp             -SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EEEE------------CSCSSCEEEEEECSGG
T ss_pred             -EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---eeee------------cCCCCceeEEEECCCC
Confidence             233 88999999999874   99999999999999987 54221   1111            22456899999999 9


Q ss_pred             CCEEEEEec-CeEEEEecCCC-----CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          335 GQHLLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       335 g~~l~~~~~-~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      ++++++++. |.|++|+++..     .+....+..|.....      .......+++++|+|++++|++++.||.|++||
T Consensus       206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             CCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            999999865 99999999874     277788887754110      000111237999999999999999999999999


Q ss_pred             cCCCCcceEEEecc-CcceeeeEeecCCCcccccccceeEeeccCc
Q 010933          409 HGVGSAGGITVEAG-KNENRKPILQAAPRARRSSLSNLTRGLYRQA  453 (497)
Q Consensus       409 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~  453 (497)
                      +.+++. ...+.+| ..+|.+++  +  ++.+     |++++.|+.
T Consensus       280 ~~~~~~-~~~~~~~h~~~v~~~~--~--~~~~-----l~s~s~Dg~  315 (342)
T 1yfq_A          280 LQTRKK-IKNFAKFNEDSVVKIA--C--SDNI-----LCLATSDDT  315 (342)
T ss_dssp             TTTTEE-EEECCCCSSSEEEEEE--E--CSSE-----EEEEEECTH
T ss_pred             CccHhH-hhhhhcccCCCceEec--C--CCCe-----EEEEecCCc
Confidence            998854 4788898 99999999  4  6666     999999987

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-34  Score=274.73  Aligned_cols=271  Identities=12%  Similarity=0.147  Sum_probs=207.5

Q ss_pred             eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccccccee
Q 010933           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        35 I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~i~  113 (497)
                      +.+++|++  +.+++++.|+.|++||+.+++.                       ...+.. |.            ..|.
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~-----------------------~~~~~~~~~------------~~v~  138 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV-----------------------SALAETDES------------TYVA  138 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCE-----------------------EEEEECCTT------------CCEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcE-----------------------eEeeecCCC------------CCEE
Confidence            44566665  5578888999999999988753                       233333 66            8899


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      +++|  +|++.+|++++.||.|++||+.+++..                                               
T Consensus       139 ~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------------------------------------  169 (401)
T 4aez_A          139 SVKW--SHDGSFLSVGLGNGLVDIYDVESQTKL-----------------------------------------------  169 (401)
T ss_dssp             EEEE--CTTSSEEEEEETTSCEEEEETTTCCEE-----------------------------------------------
T ss_pred             EEEE--CCCCCEEEEECCCCeEEEEECcCCeEE-----------------------------------------------
Confidence            9999  689999999999999999999876532                                               


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  272 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  272 (497)
                                   ..+ .+|...|.+++|  +++.+++| .|+.|++||++........       +.+|...|.+++|+
T Consensus       170 -------------~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~  226 (401)
T 4aez_A          170 -------------RTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGLAWR  226 (401)
T ss_dssp             -------------EEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEEC
T ss_pred             -------------EEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEEEEc
Confidence                         222 688999999999  45789998 9999999999855555544       67899999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEEe---cCeEEE
Q 010933          273 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YMNLKL  348 (497)
Q Consensus       273 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~---~~~i~l  348 (497)
                      |++ .+|++++.|+.|++||+++++..    ..+.             .|...|.+++|+|++. ++++++   ++.|++
T Consensus       227 ~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~-------------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          227 SDG-LQLASGGNDNVVQIWDARSSIPK----FTKT-------------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             TTS-SEEEEEETTSCEEEEETTCSSEE----EEEC-------------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             CCC-CEEEEEeCCCeEEEccCCCCCcc----EEec-------------CCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence            999 99999999999999999986543    2332             3567899999999774 566654   699999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE--eCCCcEEEEEcCCCCcc-eEEEeccCcc
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAG-GITVEAGKNE  425 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~vw~~~~~~~~-~~~~~~~~~~  425 (497)
                      ||+.+ ++++..+..+..                +.+++|+|++++|+++  +.||.|++|++.+++.. ...+.+|...
T Consensus       289 ~d~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~  351 (401)
T 4aez_A          289 WNAAT-GARVNTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR  351 (401)
T ss_dssp             EETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred             EECCC-CCEEEEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence            99986 788887764432                2699999999999984  48999999999876333 2234566665


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +..++++|  ++..     +++++.|+. ++|
T Consensus       352 v~~~~~s~--dg~~-----l~s~~~dg~i~iw  376 (401)
T 4aez_A          352 VLYSALSP--DGRI-----LSTAASDENLKFW  376 (401)
T ss_dssp             CCEEEECT--TSSE-----EEEECTTSEEEEE
T ss_pred             EEEEEECC--CCCE-----EEEEeCCCcEEEE
Confidence            55555555  3444     555555555 555

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7e-34  Score=274.84  Aligned_cols=285  Identities=14%  Similarity=0.179  Sum_probs=219.2

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ..+....|+|+|++||+|+.||.|++||+.+++                       ....+.+|.            ..|
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v  142 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI  142 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence            555666889999999999999999999988764                       356677898            899


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .+++|  +|++.+|++++.|+.|++||+.+++..                                              
T Consensus       143 ~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~----------------------------------------------  174 (420)
T 3vl1_A          143 TKLKF--FPSGEALISSSQDMQLKIWSVKDGSNP----------------------------------------------  174 (420)
T ss_dssp             EEEEE--CTTSSEEEEEETTSEEEEEETTTCCCC----------------------------------------------
T ss_pred             EEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCc----------------------------------------------
Confidence            99999  688999999999999999999876522                                              


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC------
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV------  265 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------  265 (497)
                                    ..+ .+|...|.+++|+|+++.|+++ .|+.|++||++ .++....+..    ...+...      
T Consensus       175 --------------~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~----~~~~~~~v~~~~~  234 (420)
T 3vl1_A          175 --------------RTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNR----KENPHDGVNSIAL  234 (420)
T ss_dssp             --------------EEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECB----TTBTTCCEEEEEE
T ss_pred             --------------eEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeec----CCCCCCCccEEEE
Confidence                          222 6899999999999999999999 99999999999 5555554321    1123344      


Q ss_pred             ---------------eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933          266 ---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       266 ---------------i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                                     +.+++|+|++ .+|++++.||.|++||+++++..    ..+.            ..|...+.+++
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~------------~~~~~~v~~~~  297 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLP------------SKFTCSCNSLT  297 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEEC------------CTTSSCEEEEE
T ss_pred             ecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEcc------------cccCCCceeEE
Confidence                           4445557888 89999999999999999987643    2211            23457899999


Q ss_pred             EeeCCC-EEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          331 FANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       331 ~s~~g~-~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      |+|+++ +|++|+. |.|++||+++...++..+..|....              +..+ +.+++++|++++.||.|++|+
T Consensus       298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEEETTTEEEEEEE
T ss_pred             EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEEecCCccEEEEe
Confidence            999998 8888864 9999999987445677887754321              1455 556889999999999999999


Q ss_pred             cCCCCc--------ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          409 HGVGSA--------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       409 ~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +.....        ....+..|...+..++|+|.  +..  .+.+++.+.+|. .+|
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~--~g~l~a~g~~g~~~~~  415 (420)
T 3vl1_A          363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD--DES--NGEVLEVGKNNFCALY  415 (420)
T ss_dssp             ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC--SSS--SCEEEEEETTTEEEEE
T ss_pred             ccCCCCCccceeccCccEEccCCcceEEEEEccC--CCC--cceEEEEcCCceEEEE
Confidence            987422        23457789999999999994  430  011455555666 888

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.7e-33  Score=267.36  Aligned_cols=282  Identities=9%  Similarity=0.065  Sum_probs=224.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|++++|  +|++++|++++.|+.|++||+.+++..                                           
T Consensus         9 ~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~~-------------------------------------------   43 (372)
T 1k8k_C            9 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWV-------------------------------------------   43 (372)
T ss_dssp             SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEE-------------------------------------------
T ss_pred             CCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------------------------------
Confidence            88999999  689999999999999999999876411                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     ++..+ .+|...|.+++|+|+++.|+++ .|+.|++||++ .++.....     .+..|...|.+
T Consensus        44 ---------------~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~-----~~~~~~~~v~~  101 (372)
T 1k8k_C           44 ---------------QVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTL-----VILRINRAARC  101 (372)
T ss_dssp             ---------------EEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEE-----ECCCCSSCEEE
T ss_pred             ---------------eeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC-CCeeeeeE-----EeecCCCceeE
Confidence                           22222 6899999999999999999999 99999999998 44433321     25678999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ .+|++++.|+.|++||++.+...... ..+            ..+|...+.+++|+|++++|++++ ++.|+
T Consensus       102 ~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  167 (372)
T 1k8k_C          102 VRWAPNE-KKFAVGSGSRVISICYFEQENDWWVC-KHI------------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  167 (372)
T ss_dssp             EEECTTS-SEEEEEETTSSEEEEEEETTTTEEEE-EEE------------CTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEECCCC-CEEEEEeCCCEEEEEEecCCCcceee-eee------------ecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence            9999999 99999999999999999876531100 111            123567899999999999999986 59999


Q ss_pred             EEecCC-----------------CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          348 LWDIRM-----------------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       348 lwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      +||++.                 .++++..+..|...+               .+++|+|++++|++++.||.|++||+.
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV---------------HGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE---------------EEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             EEEcccccccccccccccccccchhhheEecCCCCCeE---------------EEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999641                 256777777776654               689999999999999999999999999


Q ss_pred             CCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC--C--------------------------
Q 010933          411 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--H--------------------------  461 (497)
Q Consensus       411 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~--~--------------------------  461 (497)
                      +++. ...+..|..++.++++++  ++.+     +++| .|+. ++|....  .                          
T Consensus       233 ~~~~-~~~~~~~~~~v~~~~~~~--~~~~-----l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (372)
T 1k8k_C          233 KKMA-VATLASETLPLLAVTFIT--ESSL-----VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ  303 (372)
T ss_dssp             GTTE-EEEEECSSCCEEEEEEEE--TTEE-----EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred             CCce-eEEEccCCCCeEEEEEec--CCCE-----EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhh
Confidence            8854 488899999999999998  5555     7776 7777 9993222  0                          


Q ss_pred             ---------------cccccccCCCeEEEEEe-cCC---CEEEEEeCC-ceEEEe
Q 010933          462 ---------------HELSYNLSSKLLHLAWH-PTT---NLIACANGN-SLFFHY  496 (497)
Q Consensus       462 ---------------~~~~~~~~~~i~~l~~~-p~~---~~la~~~~~-~~~i~~  496 (497)
                                     .....+|...|++++|+ ++|   .+|++++.| .+++|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          304 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             hcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence                           11124899999999977 566   899999955 599996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.9e-33  Score=259.22  Aligned_cols=245  Identities=14%  Similarity=0.271  Sum_probs=201.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|.+++|+|+|++|++|+.|+.|++||+.+++                       .+..+.+|.            
T Consensus        63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------------------~~~~~~~~~------------  107 (312)
T 4ery_A           63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-----------------------CLKTLKGHS------------  107 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCS------------
T ss_pred             cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-----------------------EEEEEcCCC------------
Confidence            588999999999999999999999999999998764                       367788898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|++.+|++++.|+.|++||+.+++..                                           
T Consensus       108 ~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------------------------------  142 (312)
T 4ery_A          108 NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCL-------------------------------------------  142 (312)
T ss_dssp             SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEE-------------------------------------------
T ss_pred             CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEE-------------------------------------------
Confidence            88999999  688999999999999999999876532                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                       ..+ ..|...|.+++|+|+++.|++| .|+.|++||++ .++....+      ...+...+..
T Consensus       143 -----------------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~------~~~~~~~~~~  197 (312)
T 4ery_A          143 -----------------KTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTL------IDDDNPPVSF  197 (312)
T ss_dssp             -----------------EEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE------CCSSCCCEEE
T ss_pred             -----------------EEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeEE------eccCCCceEE
Confidence                             222 6888999999999999999999 99999999998 44444432      3456778999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ .+|++++.|+.|++||+++++..    ..+..|...          ...+......+++++|++|+ |+.|+
T Consensus       198 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~dg~i~  262 (312)
T 4ery_A          198 VKFSPNG-KYILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSEDNLVY  262 (312)
T ss_dssp             EEECTTS-SEEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred             EEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECCCCEEE
Confidence            9999999 99999999999999999987654    444432110          01122223336788999885 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG  410 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~  410 (497)
                      +||+++ ++.+..+.+|...+               .+++|+|++++|++++  .|+.|++|+.+
T Consensus       263 vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          263 IWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence            999986 88899999998764               6899999999999987  69999999964

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8e-34  Score=266.80  Aligned_cols=271  Identities=13%  Similarity=0.132  Sum_probs=209.1

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.||.|+|||+.++..                   ..+....+.+|.            
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~------------   57 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD------------   57 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS------------
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC------------
Confidence            5999999999999999999999999999999987532                   234567788898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|+|..++.+|++++.|+.|++||+..+......                                        
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~----------------------------------------   97 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG----------------------------------------   97 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS----------------------------------------
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc----------------------------------------
Confidence            8999999953226899999999999999999876521100                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEe------ecCCCccC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIV------DMKPSNMD  260 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~------~~~~~~~~  260 (497)
                                 ...+++..+ ..|...|.+++|+|+  ++.|+++ .|+.|++||++... ....+      ........
T Consensus        98 -----------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           98 -----------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS-DLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             -----------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT-CTTCCEEEEEEESCSCCCS
T ss_pred             -----------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH-HhccccccccccccccccC
Confidence                       001233333 689999999999999  9999999 99999999998433 22111      11111234


Q ss_pred             CCCCCeEEEEEeCC---CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--
Q 010933          261 DLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--  335 (497)
Q Consensus       261 ~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--  335 (497)
                      .|...+.+++|+|+   + .+|++++.|+.+.+|+...++..  ....             +.+|...|++++|+|++  
T Consensus       165 ~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAK-------------LPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             SCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEE-------------CCCCCSCEEEEEECCCSSC
T ss_pred             CcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeee-------------cCCCCcceeEEEECCCCCC
Confidence            68889999999997   6 89999999999988887765431  0012             24467899999999998  


Q ss_pred             --CEEEEEe-cCeEEEEecCCCC---------------------------------------------ceeeeeeecccc
Q 010933          336 --QHLLSRD-YMNLKLWDIRMDS---------------------------------------------TPVATFKIHEHL  367 (497)
Q Consensus       336 --~~l~~~~-~~~i~lwd~~~~~---------------------------------------------~~~~~~~~~~~~  367 (497)
                        ++|++++ |+.|++||++...                                             +.+..+.+|...
T Consensus       229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  308 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE  308 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred             cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence              7888885 5999999997521                                             344555556554


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      +               ++++|+|++++|++|+.||.|++|++.+++..
T Consensus       309 v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          309 V---------------WSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             E---------------EEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             E---------------EEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            3               79999999999999999999999999987543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.6e-34  Score=269.51  Aligned_cols=285  Identities=14%  Similarity=0.124  Sum_probs=221.4

Q ss_pred             cceeEEEEEec--CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          110 EKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       110 ~~i~~l~~~~s--~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      ++|++++|+|.  .....+++++.++.|++|++.+++.....                                      
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------------------------------   60 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------------------------------   60 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------------------------------
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------------------------------
Confidence            89999999542  13456777777779999999876643211                                      


Q ss_pred             cCcceEEEeecCCccceeeeee-ccCCCCCeeEEEeCCC----CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          188 ENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSD----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                         ..+ ...|...|.+++|+|+    +++|++| .|+.|++||+. .++....       +.+
T Consensus        61 -------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~-------~~~  113 (366)
T 3k26_A           61 -------------------QSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI-TMQCIKH-------YVG  113 (366)
T ss_dssp             -------------------EEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT-TCCEEEE-------EES
T ss_pred             -------------------eeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch-hceEeee-------ecC
Confidence                               111 1347789999999998    6689998 99999999998 4555544       568


Q ss_pred             CCCCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          262 LTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       262 ~~~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      |...|.+++|+| ++ .+|++++.||.|++||+++++..    ..+..          +.+|...|.+++|+|++++|++
T Consensus       114 ~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~----------~~~~~~~v~~~~~~~~~~~l~~  178 (366)
T 3k26_A          114 HGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLV----AIFGG----------VEGHRDEVLSADYDLLGEKIMS  178 (366)
T ss_dssp             CCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEE----EEECS----------TTSCSSCEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEE----EEecc----------cccccCceeEEEECCCCCEEEE
Confidence            999999999999 77 99999999999999999987644    33311          1346688999999999999999


Q ss_pred             Ee-cCeEEEEecCCCCceeeeeee----------------------------cccccccccccCCCCCccceeEEEEcCC
Q 010933          341 RD-YMNLKLWDIRMDSTPVATFKI----------------------------HEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       341 ~~-~~~i~lwd~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                      ++ |+.|++||++. ++....+..                            |...               +.+++|+  
T Consensus       179 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~--  240 (366)
T 3k26_A          179 CGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY---------------VDCVRWL--  240 (366)
T ss_dssp             EETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC---------------CCEEEEE--
T ss_pred             ecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcce---------------EEEEEEc--
Confidence            86 59999999986 554443332                            3332               2689998  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCc-------------ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          392 GLHFATGSYSNLLRIFSHGVGSA-------------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       392 ~~~l~s~~~dg~i~vw~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      +++|++++.||.|++||+.++..             ....+..|..++..+++++..++.+     |++|+.|+. ++|.
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-----l~~~~~dg~i~vwd  315 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM-----LALGNQVGKLYVWD  315 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE-----EEEECTTSCEEEEE
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE-----EEEEecCCcEEEEE
Confidence            77999999999999999987643             2577889999999999999533777     999999999 9993


Q ss_pred             CC--CCc----cccccc--CCCeEEEEEecCCCEEEEEeCC-ceEEEeC
Q 010933          458 SS--GHH----ELSYNL--SSKLLHLAWHPTTNLIACANGN-SLFFHYA  497 (497)
Q Consensus       458 ~~--~~~----~~~~~~--~~~i~~l~~~p~~~~la~~~~~-~~~i~~~  497 (497)
                      ..  +..    ..+..|  ...|++++|+|++++||+++.| .+++|+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            32  222    134555  7899999999999999999955 5999973

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-33  Score=270.82  Aligned_cols=299  Identities=9%  Similarity=0.087  Sum_probs=230.6

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      .....+.+|.            +.|++++|  +|  .+|++++.||.|++|++.+++....                   
T Consensus         7 ~~~~~~~~h~------------~~i~~~~~--~~--~~l~s~~~dg~i~iw~~~~~~~~~~-------------------   51 (397)
T 1sq9_A            7 ATANAGKAHD------------ADIFSVSA--CN--SFTVSCSGDGYLKVWDNKLLDNENP-------------------   51 (397)
T ss_dssp             EEEEESSCSS------------SCEEEEEE--CS--SEEEEEETTSEEEEEESBCCTTCCG-------------------
T ss_pred             hhhhhhhhhh------------cCeEEEEe--cC--CeEEEEcCCCEEEEEECCCcccccC-------------------
Confidence            3456678898            99999999  45  6999999999999999987652110                   


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC----C---CEEEEE-cCCeEEE
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----C---ETFVSA-DDLRINL  239 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~---~~l~~~-~d~~i~i  239 (497)
                                                         ..++..+ .+|...|.+++|+|+    +   +.|+++ .|+.|++
T Consensus        52 -----------------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i   95 (397)
T 1sq9_A           52 -----------------------------------KDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF   95 (397)
T ss_dssp             -----------------------------------GGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred             -----------------------------------CCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence                                               0122223 689999999999999    9   999998 9999999


Q ss_pred             EeCccCcee----eEEeecCCCccCCC-----CCCeEEEEEe----CCCCcE-EEEEeCCCeEEEEEccC------Cccc
Q 010933          240 WNLEISDQC----FNIVDMKPSNMDDL-----TEVITSAEFH----PIYCNL-LAYSSSRGFVRLVDMRQ------SALC  299 (497)
Q Consensus       240 wd~~~~~~~----~~~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~~-l~~~~~dg~i~v~d~~~------~~~~  299 (497)
                      ||+......    ...       +..|     ...|.+++|+    |++ .+ |++++.||.|++||+++      ++..
T Consensus        96 w~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           96 YRITREDETKKVIFEK-------LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             EEEEECTTTCCEEEEE-------ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             EEccCCccccccccee-------ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            999843320    332       4566     5899999999    999 88 99999999999999988      4433


Q ss_pred             cc-ccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeee---c---ccccccc
Q 010933          300 DH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI---H---EHLRPKL  371 (497)
Q Consensus       300 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~---~---~~~~~~~  371 (497)
                      .- ....+...      ......|...+.+++|+|++ ++++++. +.|++||+++ ++++..+..   |   ...+   
T Consensus       168 ~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i---  236 (397)
T 1sq9_A          168 NWSPTLELQGT------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSI---  236 (397)
T ss_dssp             CCCCEEEEEEE------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCE---
T ss_pred             eccCcceeeee------eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCcc---
Confidence            10 00012100      00012356789999999999 9998864 9999999986 888888887   6   5543   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEec-------------cCcceeeeEeecCC
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEA-------------GKNENRKPILQAAP  435 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~  435 (497)
                                  .+++|+|++++|++++.|   |.|++||+.+++.+ ..+.+             |..++.+++|+|  
T Consensus       237 ------------~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  301 (397)
T 1sq9_A          237 ------------RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFND--  301 (397)
T ss_dssp             ------------EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECS--
T ss_pred             ------------ceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCCcEEEEEECC--
Confidence                        699999999999999999   99999999987544 77888             999999999998  


Q ss_pred             CcccccccceeEeeccCc-eecC--CCCCccccc------cc---------------CCCeEEEEEecCC----------
Q 010933          436 RARRSSLSNLTRGLYRQA-HENS--SSGHHELSY------NL---------------SSKLLHLAWHPTT----------  481 (497)
Q Consensus       436 ~~~~~~~~~l~~~~~d~~-~iw~--~~~~~~~~~------~~---------------~~~i~~l~~~p~~----------  481 (497)
                      ++.+     |++++.|+. ++|.  .++......      .|               ...|++++|+|++          
T Consensus       302 ~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  376 (397)
T 1sq9_A          302 SGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN  376 (397)
T ss_dssp             SSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred             CCCE-----EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence            6666     999999999 9993  333444444      56               8999999999998          


Q ss_pred             CEEEEEe-CCceEEEe
Q 010933          482 NLIACAN-GNSLFFHY  496 (497)
Q Consensus       482 ~~la~~~-~~~~~i~~  496 (497)
                      ++|++++ ++.+++|+
T Consensus       377 ~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          377 ESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             CEEEEEETTTEEEEEE
T ss_pred             ceEEEecCCCcEEEEE
Confidence            7999988 55599996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-33  Score=290.16  Aligned_cols=259  Identities=19%  Similarity=0.297  Sum_probs=204.3

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|...|++++|+|+|++|++|+.||.|+|||+.+++                       ....+.+|.           
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~-----------------------~~~~~~~h~-----------  472 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV-----------------------STRRFVGHT-----------  472 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS-----------
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----------------------ceeEEeCCC-----------
Confidence            3699999999999999999999999999999998764                       366788999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  +|++++|++++.|++|++||+.........                                       
T Consensus       473 -~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~---------------------------------------  510 (694)
T 3dm0_A          473 -KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTIS---------------------------------------  510 (694)
T ss_dssp             -SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEEC---------------------------------------
T ss_pred             -CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeec---------------------------------------
Confidence             88999999  689999999999999999997543211110                                       


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                         ....+|...|.+++|+|++  ..+++| .|+.|++||++ ..+....       +.+|...
T Consensus       511 -------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~-------~~~h~~~  563 (694)
T 3dm0_A          511 -------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRST-------LAGHTGY  563 (694)
T ss_dssp             -------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEE-------ECCCSSC
T ss_pred             -------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEE-------EcCCCCC
Confidence                               0015788999999999986  578888 99999999998 4555544       6789999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  345 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~  345 (497)
                      |.+++|+|++ .+|++++.||.|++||+++++.+    ..+..              ...+.+++|+|++.+++++.++.
T Consensus       564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEEEEETTE
T ss_pred             EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEEEEcCCC
Confidence            9999999999 99999999999999999988644    22222              25699999999999999998888


Q ss_pred             EEEEecCCCCceeeeeeecccccccccc----cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCD----LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      |++||+++ ++.+..+..+.........    ......+..+++++|+|+|++|++|+.||.|+||++.
T Consensus       625 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          625 IKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            99999986 7777766543221100000    0000111124689999999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-33  Score=267.36  Aligned_cols=254  Identities=15%  Similarity=0.252  Sum_probs=200.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|++++|+|+|++||+|+.||.|++||+.+++.                       +..+.+|.            
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~------------  176 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------------------LRTMAGHQ------------  176 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS------------
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------------------EEEecCCC------------
Confidence            3788999999999999999999999999999987643                       66778898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +  +..|++++.|+.|++||+.....                                            
T Consensus       177 ~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~--------------------------------------------  208 (401)
T 4aez_A          177 ARVGCLSW--N--RHVLSSGSRSGAIHHHDVRIANH--------------------------------------------  208 (401)
T ss_dssp             SCEEEEEE--E--TTEEEEEETTSEEEEEETTSSSC--------------------------------------------
T ss_pred             CceEEEEE--C--CCEEEEEcCCCCEEEEecccCcc--------------------------------------------
Confidence            88999999  2  46999999999999999974331                                            


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     .+..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .+.....       +..|...|.+
T Consensus       209 ---------------~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~-------~~~~~~~v~~  264 (401)
T 4aez_A          209 ---------------QIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFT-------KTNHNAAVKA  264 (401)
T ss_dssp             ---------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEE-------ECCCSSCCCE
T ss_pred             ---------------eeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEE-------ecCCcceEEE
Confidence                           12222 6899999999999999999999 99999999999 4444443       5679999999


Q ss_pred             EEEeCCCCcEEEEEe--CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c
Q 010933          269 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y  343 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~  343 (497)
                      ++|+|++..++++++  .|+.|++||+++++..    ..+..              ...+.+++|+|++++++++.   +
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~g~~d  326 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDA--------------GSQVTSLIWSPHSKEIMSTHGFPD  326 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEECTTT
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeC--------------CCcEEEEEECCCCCeEEEEeecCC
Confidence            999998867788776  7999999999987654    33332              35799999999999999843   5


Q ss_pred             CeEEEEecCCCCceeee--eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          344 MNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                      +.|++||+.. ++....  +.+|...+               ++++|+|++++|++++.||.|++|++.+++.+...+..
T Consensus       327 g~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  390 (401)
T 4aez_A          327 NNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPI  390 (401)
T ss_dssp             CEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC----------
T ss_pred             CcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccc
Confidence            9999999986 544443  55676654               68999999999999999999999999988665444433


Q ss_pred             cCc
Q 010933          422 GKN  424 (497)
Q Consensus       422 ~~~  424 (497)
                      +..
T Consensus       391 ~~~  393 (401)
T 4aez_A          391 TKT  393 (401)
T ss_dssp             ---
T ss_pred             cCC
Confidence            333

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=253.91  Aligned_cols=278  Identities=13%  Similarity=0.185  Sum_probs=217.9

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      ..++|+||+++ +||+|. |++|+|||+++++.                     .....+.+|.            ..|+
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~---------------------~~~~~~~~~~------------~~V~   71 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI---------------------LQLLQMEQPG------------EYIS   71 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCE---------------------EEEEECCSTT------------CCEE
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCE---------------------EEEEEecCCC------------CeEE
Confidence            35789999986 777765 89999999998754                     1122344666            8899


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      +++|  +|++++|++|+.|++|++|++.+++...                                              
T Consensus        72 ~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~----------------------------------------------  103 (318)
T 4ggc_A           72 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLR----------------------------------------------  103 (318)
T ss_dssp             EEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE----------------------------------------------
T ss_pred             EEEE--CCCCCEEEEEECCCcEEEeecCCceeEE----------------------------------------------
Confidence            9999  6899999999999999999998876332                                              


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  272 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  272 (497)
                                    .+ .+|...+.++.+  ++..++++ .++.+++|+..........       +.+|...+..+.+.
T Consensus       104 --------------~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  159 (318)
T 4ggc_A          104 --------------NM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWA  159 (318)
T ss_dssp             --------------EE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEEC
T ss_pred             --------------Ee-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEEEEEc
Confidence                          22 678887776554  56789999 9999999999855555544       67899999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE-E--Ee-cCeEEE
Q 010933          273 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S--RD-YMNLKL  348 (497)
Q Consensus       273 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~--~~-~~~i~l  348 (497)
                      +++ .+|++++.|+.|++||+++++.........             ..+...+.++.++|++..++ .  ++ ++.|++
T Consensus       160 ~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l  225 (318)
T 4ggc_A          160 PDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-------------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  225 (318)
T ss_dssp             TTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEE-------------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred             CCC-CEEEEEecCcceeEEECCCCcccccceeee-------------cccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence            999 999999999999999999876432221222             23457899999999775443 2  33 389999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcceEEEeccCcce
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNEN  426 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v  426 (497)
                      ||.+. .........+.. +               ..+.|+|+++.+++++  .|+.|++||+.+++.+ ..+++|.++|
T Consensus       226 wd~~~-~~~~~~~~~~~~-v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~-~~l~gH~~~V  287 (318)
T 4ggc_A          226 WNVCS-GACLSAVDAHSQ-V---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRV  287 (318)
T ss_dssp             EETTT-CCEEEEEECSSC-E---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCE
T ss_pred             Eeccc-ccccccccceee-e---------------eeeeecccccceEEEEEcCCCEEEEEECCCCcEE-EEEcCCCCCE
Confidence            99986 555544443332 2               5899999999887655  7999999999998554 8899999999


Q ss_pred             eeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          427 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      ++++|+|  ++.+     |++|+.|+. ++|.
T Consensus       288 ~~l~~sp--dg~~-----l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          288 LSLTMSP--DGAT-----VASAAADETLRLWR  312 (318)
T ss_dssp             EEEEECT--TSSC-----EEEEETTTEEEEEC
T ss_pred             EEEEEcC--CCCE-----EEEEecCCeEEEEE
Confidence            9999999  6777     999999999 9994

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7e-33  Score=254.45  Aligned_cols=247  Identities=14%  Similarity=0.138  Sum_probs=197.6

Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                      ..+.+|.            +.|++++|  ++++++|++++.|++|++|++.++..                         
T Consensus         3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~-------------------------   43 (297)
T 2pm7_B            3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETH-------------------------   43 (297)
T ss_dssp             EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCB-------------------------
T ss_pred             eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCc-------------------------
Confidence            3467888            89999999  78999999999999999999874321                         


Q ss_pred             ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCc-
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD-  246 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~-  246 (497)
                                                       +++.++ .+|...|++++|+++  ++.|++| .|++|++||++... 
T Consensus        44 ---------------------------------~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~   89 (297)
T 2pm7_B           44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW   89 (297)
T ss_dssp             ---------------------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred             ---------------------------------EEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence                                             122333 799999999999863  8899999 99999999998432 


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  324 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (497)
                      .....       +.+|...|.+++|+|+  + .+|++++.|+.|++||++++....  ...             +.+|..
T Consensus        90 ~~~~~-------~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~-------------~~~h~~  146 (297)
T 2pm7_B           90 SQIAV-------HAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PII-------------IDAHAI  146 (297)
T ss_dssp             CCCEE-------ECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEE-------------EECCSS
T ss_pred             EEEEE-------eecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eee-------------eecccC
Confidence            12222       5679999999999997  7 899999999999999998753210  012             244668


Q ss_pred             cccEEEEeeC-------------CCEEEEEe-cCeEEEEecCCCCc----eeeeeeecccccccccccCCCCCccceeEE
Q 010933          325 SISDIKFAND-------------GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFEC  386 (497)
Q Consensus       325 ~i~~~~~s~~-------------g~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (497)
                      .+.+++|+|+             +++|++|+ |+.|++||++. ++    ....+.+|...+               +++
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v  210 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDV  210 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEE
Confidence            8999999997             56888885 59999999986 44    556778888765               799


Q ss_pred             EEcCCC---CEEEEEeCCCcEEEEEcCCCCc--ceEEE--eccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          387 SVSGDG---LHFATGSYSNLLRIFSHGVGSA--GGITV--EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       387 ~~s~~~---~~l~s~~~dg~i~vw~~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +|+|++   ++|++++.|++|+|||+++...  ....+  ..|...+.+++|+|  ++..     |++++.|+. ++|
T Consensus       211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----las~~~D~~v~lw  281 (297)
T 2pm7_B          211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLW  281 (297)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS--SSCC-----EEEEETTSCEEEE
T ss_pred             EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC--CCCE-----EEEEcCCCcEEEE
Confidence            999984   8999999999999999987532  12233  56888999999999  6666     999999999 999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=262.91  Aligned_cols=292  Identities=13%  Similarity=0.147  Sum_probs=220.9

Q ss_pred             cCCcceEEEEEcCC---CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h~~~I~~i~~sp~---g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .|.+.|+|++|+|+   |++||+|+.||.|+|||+.+...                     .....+.+|.         
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~---------   86 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQMHT---------   86 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEEECS---------
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEecccc---------
Confidence            58999999999999   69999999999999999987322                     2236678898         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         ..|.+++|  +|++++|++++.|+.|++||+.+++....                                      
T Consensus        87 ---~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--------------------------------------  123 (368)
T 3mmy_A           87 ---GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI--------------------------------------  123 (368)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE--------------------------------------
T ss_pred             ---CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee--------------------------------------
Confidence               88999999  68999999999999999999987663321                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEe--CCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                              ..|...|.+++|  +++++.|+++ .|+.|++||++ .++....       +..+ 
T Consensus       124 ------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~-------~~~~-  170 (368)
T 3mmy_A          124 ------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMV-------LQLP-  170 (368)
T ss_dssp             ------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEE-------EECS-
T ss_pred             ------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEE-------EecC-
Confidence                                    478899999999  8999999999 99999999998 4444443       2223 


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE----EE
Q 010933          264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH----LL  339 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~----l~  339 (497)
                      ..+.++.+.+   ..+++++.++.+++||++.......   ....            .+.....++.+.++...    ++
T Consensus       171 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          171 ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RIES------------PLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---ECCC------------SCSSCEEEEEEEECTTSCEEEEE
T ss_pred             CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hccc------------cccCCCceEEEcccCCCCCCeEE
Confidence            3566666664   5688899999999999987543211   1111            11245667777766654    77


Q ss_pred             EEe-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933          340 SRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  416 (497)
Q Consensus       340 ~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~  416 (497)
                      +++ ++.|++||++...  ..+..+..|........   .......+++++|+|++++|++|+.||.|++||+.+++. .
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~  308 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS---APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK-L  308 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEEEECSEEC----C---CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-E
T ss_pred             EecCCCcEEEEecCCCCccccceeeeeeeccccccc---ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE-E
Confidence            765 5999999998622  45667777764210000   000000137999999999999999999999999998744 4


Q ss_pred             EEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          417 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       417 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ..+.+|..++.+++|+|  ++.+     |++++.|+. +.|
T Consensus       309 ~~~~~~~~~v~~~~~s~--~g~~-----l~~~s~d~~~~~~  342 (368)
T 3mmy_A          309 KTSEQLDQPISACCFNH--NGNI-----FAYASSYDWSKGH  342 (368)
T ss_dssp             EECCCCSSCEEEEEECT--TSSC-----EEEEECCCSTTCG
T ss_pred             EEecCCCCCceEEEECC--CCCe-----EEEEecccccccc
Confidence            88899999999999999  6777     999998876 444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=262.86  Aligned_cols=280  Identities=12%  Similarity=0.110  Sum_probs=215.1

Q ss_pred             cceeEEEEEecCCCCEEE-EEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          110 EKINRVRWCAAPNGSMFI-LSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~-s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                      ..|.+++|  +|++..++ +++.   |+.|++|++.+++....                                     
T Consensus        19 ~~v~~~~~--~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-------------------------------------   59 (357)
T 3i2n_A           19 YTVFDCKW--VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-------------------------------------   59 (357)
T ss_dssp             SCEEEEEE--CTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------------------------------------
T ss_pred             CceEEEEE--cCCCceEEEecCccCCCcEEEEEeCCCCcccce-------------------------------------
Confidence            89999999  67776665 4554   99999999987663221                                     


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                           .  ..+|...|.+++|+|+   ++.|++| .|+.|++||+.........       +.+
T Consensus        60 ---------------------~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~  109 (357)
T 3i2n_A           60 ---------------------R--EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS-------VKG  109 (357)
T ss_dssp             ---------------------E--EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-------ECC
T ss_pred             ---------------------e--eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE-------EEe
Confidence                                 1  1378889999999998   6999999 9999999999954424443       678


Q ss_pred             CCCCeEEEEE------eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE----E
Q 010933          262 LTEVITSAEF------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK----F  331 (497)
Q Consensus       262 ~~~~i~~~~~------~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~  331 (497)
                      |...|.+++|      +|++ .+|++++.||.|++||+++++...   ..+..|..         .+...+.+++    |
T Consensus       110 ~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~---------~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A          110 HKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQG---------ENKRDCWTVAFGNAY  176 (357)
T ss_dssp             CSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCS---EEECCCTT---------SCCCCEEEEEEECCC
T ss_pred             cccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcc---eeccccCC---------CCCCceEEEEEEecc
Confidence            9999999965      6788 899999999999999999875221   33332110         0124688888    7


Q ss_pred             eeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC---CCCEEEEEeCCCcEEEE
Q 010933          332 ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIF  407 (497)
Q Consensus       332 s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~s~~~dg~i~vw  407 (497)
                      +|++++|++++. +.|++||++. ++... ...|...+               .+++|+|   ++++|++++.||.|++|
T Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~~v---------------~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          177 NQEERVVCAGYDNGDIKLFDLRN-MALRW-ETNIKNGV---------------CSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             C-CCCEEEEEETTSEEEEEETTT-TEEEE-EEECSSCE---------------EEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             CCCCCEEEEEccCCeEEEEECcc-Cceee-ecCCCCce---------------EEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            889999999865 9999999986 55533 34455433               6999999   99999999999999999


Q ss_pred             EcCCCCcceEE-----EeccCcceeeeEeecCCCcc-cccccceeEeeccCc-eecCCC---------------------
Q 010933          408 SHGVGSAGGIT-----VEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSS---------------------  459 (497)
Q Consensus       408 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~d~~-~iw~~~---------------------  459 (497)
                      |+.+++.. ..     +.+|..++.+++++|  ++. +     +++++.|+. ++|...                     
T Consensus       240 d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          240 DMRTQHPT-KGFASVSEKAHKSTVWQVRHLP--QNREL-----FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             EEEEEETT-TEEEEEEEECCSSCEEEEEEET--TEEEE-----EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             eCcCCCcc-cceeeeccCCCcCCEEEEEECC--CCCcE-----EEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            99876544 33     349999999999999  444 5     899999999 999322                     


Q ss_pred             CCcccccccCCCeEEEEEecCCCEEE-EEe-CCceEEEe
Q 010933          460 GHHELSYNLSSKLLHLAWHPTTNLIA-CAN-GNSLFFHY  496 (497)
Q Consensus       460 ~~~~~~~~~~~~i~~l~~~p~~~~la-~~~-~~~~~i~~  496 (497)
                      ........|...|++++|+|++++|+ +++ ++.+++|+
T Consensus       312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence            12334567899999999999999998 677 55699996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-34  Score=295.08  Aligned_cols=257  Identities=15%  Similarity=0.204  Sum_probs=204.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|+|++||+|+.||.|+|||+.++.                     ......+.+|.            
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------~~~~~~l~~h~------------   53 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE------------   53 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------EEEEEEECCCS------------
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------CccceeccCCc------------
Confidence            599999999999999999999999999999998542                     24567788998            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|++++|+|..++.+|++++.||.|++||+.+++..                                           
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~-------------------------------------------   90 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-------------------------------------------   90 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE-------------------------------------------
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc-------------------------------------------
Confidence            8999999954334899999999999999999876521                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                     .+..+ .+|...|.+++|+|+  ++.+++| .||.|++||++........      .+.+|...|
T Consensus        91 ---------------~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~~~~~v  148 (753)
T 3jro_A           91 ---------------QIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGV  148 (753)
T ss_dssp             ---------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEECCSSCE
T ss_pred             ---------------ccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------EeecCCCce
Confidence                           11222 689999999999999  9999999 9999999999844222211      256799999


Q ss_pred             EEEEEeC-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933          267 TSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  333 (497)
Q Consensus       267 ~~~~~~~-------------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  333 (497)
                      .+++|+|             ++ .+|++++.||.|++||++++.........             +.+|...|.+++|+|
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------~~~h~~~V~~l~~sp  214 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRDVAWSP  214 (753)
T ss_dssp             EEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEEEEECC
T ss_pred             EEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee-------------ecCCCCcEEEEEecc
Confidence            9999999             47 89999999999999999886432111122             345678999999999


Q ss_pred             C---CCEEEEEe-cCeEEEEecCCCCc----eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933          334 D---GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  405 (497)
Q Consensus       334 ~---g~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~  405 (497)
                      +   +++|++++ ||.|++||+.....    .......|...+               ++++|+|++++|++|+.||.|+
T Consensus       215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~Dg~I~  279 (753)
T 3jro_A          215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGDNKVT  279 (753)
T ss_dssp             CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECSSSCEE
T ss_pred             CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcCCCEEE
Confidence            9   89999986 59999999986321    222223344332               6899999999999999999999


Q ss_pred             EEEcCCCC
Q 010933          406 IFSHGVGS  413 (497)
Q Consensus       406 vw~~~~~~  413 (497)
                      +|++..+.
T Consensus       280 vwd~~~~~  287 (753)
T 3jro_A          280 LWKENLEG  287 (753)
T ss_dssp             CCBCCSSS
T ss_pred             EEecCCCC
Confidence            99998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.5e-33  Score=258.75  Aligned_cols=242  Identities=13%  Similarity=0.090  Sum_probs=192.5

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|++++|  ++++++|++++.|++|++||+.++...                                           
T Consensus        14 ~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~-------------------------------------------   48 (316)
T 3bg1_A           14 DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQI-------------------------------------------   48 (316)
T ss_dssp             CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEE-------------------------------------------
T ss_pred             CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcE-------------------------------------------
Confidence            89999999  688999999999999999999765421                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-eeeEEeecCCCccCCCCCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~  265 (497)
                                     ++..+ .+|...|++++|++  +++.|++| .|++|++||++... .....       +.+|...
T Consensus        49 ---------------~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-------~~~h~~~  105 (316)
T 3bg1_A           49 ---------------LIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE-------HAGHDSS  105 (316)
T ss_dssp             ---------------EEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE-------ECCCSSC
T ss_pred             ---------------EEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE-------ccCCCCc
Confidence                           12222 79999999999986  48899999 99999999998432 22222       6789999


Q ss_pred             eEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC---------
Q 010933          266 ITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------  334 (497)
Q Consensus       266 i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------  334 (497)
                      |.+++|+|+  + .+|++++.|+.|++||++.+...    ...          ..+.+|...+.+++|+|+         
T Consensus       106 V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~----~~~----------~~~~~h~~~v~~~~~~~~~~~~~~~~~  170 (316)
T 3bg1_A          106 VNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW----EVK----------KINNAHTIGCNAVSWAPAVVPGSLIDH  170 (316)
T ss_dssp             CCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE----EEC----------CBTTSSSSCBCCCEECCCCCC------
T ss_pred             eEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc----cee----------eeeccccCCcceEEEccccCCcccccc
Confidence            999999998  6 89999999999999999875321    000          112346678999999997         


Q ss_pred             --------CCEEEEEe-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCC----CEEEEEe
Q 010933          335 --------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHFATGS  399 (497)
Q Consensus       335 --------g~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~s~~  399 (497)
                              +++|++|+ |+.|++||++..+  +++..+.+|...+               ++++|+|++    ++|++|+
T Consensus       171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECCCCSSCSCCEEEEEE
T ss_pred             ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEecCCCCCCCceEEEEc
Confidence                    46888875 5999999997422  4667788888765               799999986    8999999


Q ss_pred             CCCcEEEEEcCCC---CcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          400 YSNLLRIFSHGVG---SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       400 ~dg~i~vw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .|++|++|++.+.   ......+..|...|++++|+|  ++..     |++++.|+. ++|
T Consensus       236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----las~~~D~~v~lw  289 (316)
T 3bg1_A          236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI--TANI-----LAVSGGDNKVTLW  289 (316)
T ss_dssp             TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT--TTCC-----EEEEESSSCEEEE
T ss_pred             CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC--CCCE-----EEEEcCCCeEEEE
Confidence            9999999999863   222345678888999999998  5666     899999998 999

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.5e-32  Score=265.74  Aligned_cols=297  Identities=14%  Similarity=0.192  Sum_probs=225.1

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|++++|+|++ +|++|+.||.|++||+.+++                       .+..+.+|.            
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----------------------~~~~~~~h~------------  203 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----------------------CTHVFEGHN------------  203 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------
T ss_pred             CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----------------------EEEEECCCC------------
Confidence            599999999999988 99999999999999998764                       367788898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|++.+++.++++++.|+.|++||+.++............                                  
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------------------------------  249 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----------------------------------  249 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS----------------------------------
T ss_pred             CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc----------------------------------
Confidence            8999999987788899999999999999999876533221111000                                  


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                       .......  ......+..+ .+|...+.++  +++++.+++| .|+.|++||++ .++....       +.+|...|.+
T Consensus       250 -~~~~~~~--~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~-------~~~~~~~v~~  315 (464)
T 3v7d_B          250 -PLVFHTP--EENPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA-QMKCLYI-------LSGHTDRIYS  315 (464)
T ss_dssp             -SEEESCG--GGCTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSCEEE
T ss_pred             -ceEeecc--CCCeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------ecCCCCCEEE
Confidence             0000000  0001122233 7888888877  5778899999 99999999998 5555554       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ .+|++++.||.|++||+++++..    ..+.             +|...+.++.|+  +++|++++ ||.|+
T Consensus       316 ~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~~~-------------~h~~~v~~~~~~--~~~l~s~s~dg~v~  375 (464)
T 3v7d_B          316 TIYDHER-KRCISASMDTTIRIWDLENGELM----YTLQ-------------GHTALVGLLRLS--DKFLVSAAADGSIR  375 (464)
T ss_dssp             EEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred             EEEcCCC-CEEEEEeCCCcEEEEECCCCcEE----EEEe-------------CCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence            9999999 99999999999999999987654    3333             356789999997  57888875 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||+.+ ........ +...+               ..++|+|++++|++|+ ||.|++||+.+++.+...+..|..+|.
T Consensus       376 vwd~~~-~~~~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~  437 (464)
T 3v7d_B          376 GWDAND-YSRKFSYH-HTNLS---------------AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIW  437 (464)
T ss_dssp             EEETTT-CCEEEEEE-CTTCC---------------CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEE
T ss_pred             EEECCC-Cceeeeec-CCCCc---------------cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEE
Confidence            999986 55444443 22221               4789999999999999 899999999998766555788999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eec
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +++|+.   ...     +++++.++. .+|
T Consensus       438 ~v~~~~---~~l-----~~~~~~~g~~~i~  459 (464)
T 3v7d_B          438 SVNFKG---KTL-----VAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEEET---TEE-----EEEEEETTEEEEE
T ss_pred             EEEecC---CEE-----EEEEEeCCeEEEE
Confidence            999963   222     566666666 444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-32  Score=265.56  Aligned_cols=248  Identities=19%  Similarity=0.290  Sum_probs=205.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|+||+|+|+|++||+|+.||.|+|||+.+++                       .+..+.+|.            
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~------------  189 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS------------  189 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC------------
Confidence            577899999999999999999999999999998874                       377788999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.++.|    ++..|++++.|+.+++||......                                            
T Consensus       190 ~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~--------------------------------------------  221 (420)
T 4gga_A          190 ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH--------------------------------------------  221 (420)
T ss_dssp             SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC--------------------------------------------
T ss_pred             CceEEEee----CCCEEEEEeCCCceeEeeecccce--------------------------------------------
Confidence            88999888    356999999999999999875431                                            


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     .+..+ .+|...+..+.++|+++.++++ .|+.+++|+..........    ......|...|.+
T Consensus       222 ---------------~~~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~~V~~  281 (420)
T 4gga_A          222 ---------------HVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKA  281 (420)
T ss_dssp             ---------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSSCEEE
T ss_pred             ---------------eeEEe-cccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCCceee
Confidence                           12222 6899999999999999999999 9999999999843321110    0125678999999


Q ss_pred             EEEeCCCCcEEEEE--eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c
Q 010933          269 AEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y  343 (497)
Q Consensus       269 ~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~  343 (497)
                      ++|+|.+..+++++  +.|+.|++||+++++..    ..+..              ...+.++.|+|+++.+++++   |
T Consensus       282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~sg~~d  343 (420)
T 4gga_A          282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGHGFAQ  343 (420)
T ss_dssp             EEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEECTTT
T ss_pred             eeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEEecCC
Confidence            99999886777765  47999999999998654    33333              25689999999999988763   5


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      +.|+|||+.+ ++++.++.+|...|               ++++|+|||++|+||+.|++|+|||+.+...
T Consensus       344 ~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          344 NQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             CCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             CEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence            9999999987 89999999998865               7999999999999999999999999987543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-32  Score=266.32  Aligned_cols=270  Identities=12%  Similarity=0.204  Sum_probs=221.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|...|+|++|  +|++|++|+.||.|++||..+++.                       ...+.+|.            
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-----------------------~~~~~~h~------------  173 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-----------------------KRILTGHT------------  173 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-----------------------EEEECCCS------------
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-----------------------EEEEcCCC------------
Confidence            46678999887  789999999999999999987643                       67788998            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|.+++|    ++.+|++|+.||.|++||+.+++..                                           
T Consensus       174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~-------------------------------------------  206 (435)
T 1p22_A          174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEML-------------------------------------------  206 (435)
T ss_dssp             SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEE-------------------------------------------
T ss_pred             CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEE-------------------------------------------
Confidence            88999998    5679999999999999999876632                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                       ..+ .+|...|.+++|++  ..+++| .|+.|++||++........     ..+.+|...|.+
T Consensus       207 -----------------~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~v~~  261 (435)
T 1p22_A          207 -----------------NTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNV  261 (435)
T ss_dssp             -----------------EEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSSCEEE
T ss_pred             -----------------EEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-----eEecCCCCcEEE
Confidence                             222 68899999999974  588888 9999999999844322110     126789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|  ++ .+|++++.||.|++||+++++..    ..+.             +|...+.++.++  ++++++|+ |+.|+
T Consensus       262 ~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~~~-------------~~~~~v~~~~~~--~~~l~~g~~dg~i~  319 (435)
T 1p22_A          262 VDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RTLN-------------GHKRGIACLQYR--DRLVVSGSSDNTIR  319 (435)
T ss_dssp             EEE--ET-TEEEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             EEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EEEc-------------CCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence            999  55 78999999999999999987654    3333             355788888884  67888875 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc--------ceEEE
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------GGITV  419 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~--------~~~~~  419 (497)
                      +||+++ ++++..+.+|...+               .+++|  ++++|++|+.||.|++||+.++..        ....+
T Consensus       320 iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  381 (435)
T 1p22_A          320 LWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL  381 (435)
T ss_dssp             EEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             EEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence            999997 88999999888764               57777  789999999999999999976541        45788


Q ss_pred             eccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          420 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      .+|.++|.++++    ++..     +++|+.||. ++|.
T Consensus       382 ~~h~~~v~~l~~----~~~~-----l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          382 VEHSGRVFRLQF----DEFQ-----IVSSSHDDTILIWD  411 (435)
T ss_dssp             CCCSSCCCCEEE----CSSC-----EEECCSSSEEEEEC
T ss_pred             cCCCCCeEEEEe----CCCE-----EEEEeCCCEEEEEE
Confidence            999999999999    3444     899999999 9994

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-33  Score=274.93  Aligned_cols=297  Identities=10%  Similarity=0.044  Sum_probs=205.2

Q ss_pred             cCCcceEEEEEcCC------CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933           30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  103 (497)
Q Consensus        30 ~h~~~I~~i~~sp~------g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  103 (497)
                      .|.+.|.+++|+|+      +.+||+|+.||+|+|||+.+++.... ..           ........++.+|.      
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~-~~-----------~~~~~p~~~l~~h~------  266 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH-VF-----------KMCEKPSLTLSLAD------  266 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-EE-----------ECCCSCSEEECCTT------
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-cc-----------eeecCceEEEEcCC------
Confidence            46789999999997      57999999999999999987532000 00           00001234577888      


Q ss_pred             cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                            ..|++++|+  ++ ..|++|+.||+|++||+.++..                                      
T Consensus       267 ------~~v~sv~~s--~~-~~lasgs~DgtV~lWD~~~~~~--------------------------------------  299 (524)
T 2j04_B          267 ------SLITTFDFL--SP-TTVVCGFKNGFVAEFDLTDPEV--------------------------------------  299 (524)
T ss_dssp             ------TCEEEEEES--SS-SEEEEEETTSEEEEEETTBCSS--------------------------------------
T ss_pred             ------CCEEEEEec--CC-CeEEEEeCCCEEEEEECCCCCC--------------------------------------
Confidence                  889999994  44 4899999999999999986531                                      


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEE--EeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSI--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                           +... +.+|...|.++  .|+|++ .+|++| .|++|++||++ ..+....       +
T Consensus       300 ---------------------~~~~-~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~-~~~~~~~-------~  349 (524)
T 2j04_B          300 ---------------------PSFY-DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK-DIATTKT-------T  349 (524)
T ss_dssp             ---------------------CSEE-EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG-GHHHHCE-------E
T ss_pred             ---------------------ceEE-eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC-CCCcccc-------c
Confidence                                 1111 26899999999  578887 889999 99999999998 4443332       3


Q ss_pred             CCCC--CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933          260 DDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  337 (497)
Q Consensus       260 ~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  337 (497)
                      .+|.  ..|.+++|+|++ ..|++++.|+.|++||++++...    ..+             .+|.+.|++++|+|+|++
T Consensus       350 ~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~~l-------------~gH~~~V~sva~Sp~g~~  411 (524)
T 2j04_B          350 VSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----HPL-------------VSRETTITAIGVSRLHPM  411 (524)
T ss_dssp             EEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC----EEE-------------EECSSCEEEEECCSSCCB
T ss_pred             ccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc----eee-------------ecCCCceEEEEeCCCCCe
Confidence            3443  357899999999 88999999999999999987543    233             346789999999999999


Q ss_pred             EEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933          338 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  416 (497)
Q Consensus       338 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~  416 (497)
                      |++|+ |+.|++||+..  +.+...+.+....          ....+++++|+|+++.+ ....+  ..+|+........
T Consensus       412 l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~-~~~~~--~~~~~~~~~g~~~  476 (524)
T 2j04_B          412 VLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKY-RIDSS--YEVYPLTVNDVSK  476 (524)
T ss_dssp             CEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEE-EECCC--CCCCC--------
T ss_pred             EEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeE-EccCC--ceecccccCCcce
Confidence            99986 59999999863  3333222111100          00012589999999855 23222  3344433112345


Q ss_pred             EEEeccCcceeeeEeecCCC-cccccccceeEeeccCc-eecCCC
Q 010933          417 ITVEAGKNENRKPILQAAPR-ARRSSLSNLTRGLYRQA-HENSSS  459 (497)
Q Consensus       417 ~~~~~~~~~v~~~~~~~~~~-~~~~~~~~l~~~~~d~~-~iw~~~  459 (497)
                      ..+.+|..+|++++|+|..+ +..     +|+|+.+|. ++|...
T Consensus       477 ~~l~gh~~~V~~Vafsp~~~~~~~-----lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          477 AKIDAHGINITCTKWNETSAGGKC-----YAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             -----CCCSCCCEEECCSTTTTTE-----EEEECTTSEEEEEECS
T ss_pred             eeecCCCceEEEEECCCCCCccHH-----HHhhccCceEEEEEcc
Confidence            78999999999999999533 345     999999999 999433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.5e-32  Score=259.36  Aligned_cols=286  Identities=14%  Similarity=0.120  Sum_probs=217.0

Q ss_pred             ceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        34 ~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ....++++|+...+ ++|+.||.|+||++.....                   ....+..+.+|.            +.|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-------------------~~~~~~~~~~h~------------~~V   84 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-------------------VDKNVPLVCGHT------------APV   84 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-------------------CCTTCCCBCCCS------------SCE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-------------------CCCCCceEecCC------------CCE
Confidence            44568899987544 4578899999999865321                   112355678898            899


Q ss_pred             eEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          113 NRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       113 ~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      ++++|  +| ++.+|++++.|+.|++|++.++......                                          
T Consensus        85 ~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------------------------------------  120 (402)
T 2aq5_A           85 LDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------------------------------------------  120 (402)
T ss_dssp             EEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCB------------------------------------------
T ss_pred             EEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCcccc------------------------------------------
Confidence            99999  57 8899999999999999999876532110                                          


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc--CCCCCCeE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVIT  267 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~  267 (497)
                                 .+++..+ .+|...|.+++|+|++ +.|++| .|+.|++||++ .++....       +  ..|...|.
T Consensus       121 -----------~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~-------~~~~~~~~~v~  180 (402)
T 2aq5_A          121 -----------REPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLT-------LGPDVHPDTIY  180 (402)
T ss_dssp             -----------CSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEE-------ECTTTCCSCEE
T ss_pred             -----------CCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEE-------EecCCCCCceE
Confidence                       0123333 7899999999999998 688998 99999999999 5555544       4  67999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccccee-cccccccCCccccccccc-cccEEEEeeCCCEEEEE----
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR----  341 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~----  341 (497)
                      +++|+|++ .+|++++.|+.|++||+++++..    ..+ ..             |.+ .+.++.|+|++++|++|    
T Consensus       181 ~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~-------------~~~~~~~~~~~~~~~~~l~~g~~~~  242 (402)
T 2aq5_A          181 SVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKDRP-------------HEGTRPVHAVFVSEGKILTTGFSRM  242 (402)
T ss_dssp             EEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEECS-------------SCSSSCCEEEECSTTEEEEEEECTT
T ss_pred             EEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeeccC-------------CCCCcceEEEEcCCCcEEEEeccCC
Confidence            99999999 99999999999999999987654    333 22             233 38999999999999998    


Q ss_pred             ecCeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcceEEE
Q 010933          342 DYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       342 ~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~  419 (497)
                      .++.|++||++....++.... .+...+               ..++|+|++++|+ +|+.||.|++||+.+++.....+
T Consensus       243 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l  307 (402)
T 2aq5_A          243 SERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL  307 (402)
T ss_dssp             CCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred             CCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence            459999999986333343333 222222               6899999999997 55579999999999886534555


Q ss_pred             ecc--CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          420 EAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       420 ~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ..|  ..++.+++|+|  ++..     ++++  ++. ++|
T Consensus       308 ~~~~~~~~v~~~~~sp--~~~~-----~~s~--~~~~~~~  338 (402)
T 2aq5_A          308 SMFSSKESQRGMGYMP--KRGL-----EVNK--CEIARFY  338 (402)
T ss_dssp             EEECCSSCCSEEEECC--GGGS-----CGGG--TEEEEEE
T ss_pred             cccccCCcccceEEec--cccc-----ceec--ceeEEEE
Confidence            554  59999999998  5554     4443  334 777

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.9e-32  Score=261.29  Aligned_cols=312  Identities=16%  Similarity=0.233  Sum_probs=219.6

Q ss_pred             cccccccCcccccccccccccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      ...+.+|.            +.|++++|  +| ++.+|++++.||.|++|++.++..........               
T Consensus        36 ~~~~~~h~------------~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------   86 (408)
T 4a11_B           36 RDVERIHG------------GGINTLDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------   86 (408)
T ss_dssp             EEECCCCS------------SCEEEEEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------
T ss_pred             eeeeeccC------------CcEEEEEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------
Confidence            55677888            99999999  67 89999999999999999998766433211000               


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCc
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                               ....        ......+|...|.+++|+| +++.|+++ .|+.|++||+. .+
T Consensus        87 -------------------------~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~  132 (408)
T 4a11_B           87 -------------------------VCSI--------GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN-TL  132 (408)
T ss_dssp             -------------------------EEEE--------CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT-TT
T ss_pred             -------------------------cccc--------cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC-CC
Confidence                                     0000        0000146899999999999 77899998 99999999999 55


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCC--cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  324 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (497)
                      +....+        .+...+.++.++|.+.  .++++++.|+.|++||+++++..    ..+.             .|..
T Consensus       133 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~-------------~~~~  187 (408)
T 4a11_B          133 QTADVF--------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HILQ-------------GHRQ  187 (408)
T ss_dssp             EEEEEE--------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EEEC-------------CCCS
T ss_pred             ccceec--------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----eeec-------------CCCC
Confidence            555442        3677899999998641  49999999999999999987644    3333             3567


Q ss_pred             cccEEEEeeCCCE-EEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          325 SISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       325 ~i~~~~~s~~g~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      .|.+++|+|++++ +++++ ++.|++||++....++..+..+..................+++++|+|++++|++++.||
T Consensus       188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  267 (408)
T 4a11_B          188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN  267 (408)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence            8999999999984 77775 599999999874445555533322110000000001111237999999999999999999


Q ss_pred             cEEEEEcCCCCcceEEEeccC--c--ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEE
Q 010933          403 LLRIFSHGVGSAGGITVEAGK--N--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHL  475 (497)
Q Consensus       403 ~i~vw~~~~~~~~~~~~~~~~--~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l  475 (497)
                      .|++||+.+++.. ..+..+.  .  .......... ...     .++.++.++. .+|  ..++......+|...|+++
T Consensus       268 ~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~  340 (408)
T 4a11_B          268 RMRLWNSSNGENT-LVNYGKVCNNSKKGLKFTVSCG-CSS-----EFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC  340 (408)
T ss_dssp             CEEEEETTTCCBC-CCCCCCCCCCCSSCCCCEECCS-SSS-----CEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             eEEEEECCCCccc-eeccccccccccccceeEEecC-CCc-----eEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE
Confidence            9999999987553 2222111  1  1111222221 122     2677777888 999  4455566677899999999


Q ss_pred             EEecCCCEEEEEeCC-ceEEEe
Q 010933          476 AWHPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       476 ~~~p~~~~la~~~~~-~~~i~~  496 (497)
                      +|+|++++|++++.| .+++|+
T Consensus       341 ~~s~~~~~l~s~~~dg~i~iw~  362 (408)
T 4a11_B          341 VFQSNFQELYSGSRDCNILAWV  362 (408)
T ss_dssp             EEETTTTEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEECCCCeEEEEe
Confidence            999999999999954 599996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-31  Score=251.61  Aligned_cols=299  Identities=16%  Similarity=0.129  Sum_probs=204.6

Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                      ..+.+|.            +.|++++|  +|++.+|++++.||.|++|++.++....                       
T Consensus         5 ~~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------   47 (351)
T 3f3f_A            5 PFDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNW-----------------------   47 (351)
T ss_dssp             CEECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCE-----------------------
T ss_pred             ccCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcc-----------------------
Confidence            3467888            89999999  6899999999999999999998654211                       


Q ss_pred             ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-  246 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-  246 (497)
                                                       +....+ .+|...|.+++|+|  +++.|++| .|+.|++||++... 
T Consensus        48 ---------------------------------~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           48 ---------------------------------ELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             ---------------------------------EEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred             ---------------------------------eeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence                                             122233 68999999999999  69999999 99999999998432 


Q ss_pred             -------eeeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc
Q 010933          247 -------QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  317 (497)
Q Consensus       247 -------~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  317 (497)
                             +....       +..|...|.+++|+|+  + .+|++++.||.|++||+++++...    .+...........
T Consensus        94 ~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~  161 (351)
T 3f3f_A           94 ECSGRRWNKLCT-------LNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR----SWTLTSEMKVLSI  161 (351)
T ss_dssp             TTSSCSEEEEEE-------ECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT----CCEEEEEEESCSC
T ss_pred             cccccCcceeee-------ecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc----ccccccccccccc
Confidence                   22332       6689999999999999  8 999999999999999999876542    2221111111111


Q ss_pred             ccccccccccEEEEeeC---CCEEEEEec-CeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933          318 FFTEIIASISDIKFAND---GQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       318 ~~~~~~~~i~~~~~s~~---g~~l~~~~~-~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                      ....|...+.+++|+|+   +.++++++. +.+.+|+... ++.  +..+.+|...+               ++++|+|+
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~  225 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPS  225 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCC
Confidence            12356788999999997   889998865 7777777654 543  66677777654               79999999


Q ss_pred             C----CEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-----eecC--CCC
Q 010933          392 G----LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-----HENS--SSG  460 (497)
Q Consensus       392 ~----~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-----~iw~--~~~  460 (497)
                      +    ++|++|+.||.|++||+.++... .....+..........+  ....     ++.+..++.     .+|.  ...
T Consensus       226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  297 (351)
T 3f3f_A          226 IGRWYQLIATGCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSA--DVDM-----DAQGRSDSNTEEKAELQSNLQVE  297 (351)
T ss_dssp             SSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------------CCSEEEE
T ss_pred             CCCcceEEEEEcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCc--cccc-----ccccccccccceeeeeccccccc
Confidence            8    89999999999999999876433 22222222222222222  1111     222322222     3331  112


Q ss_pred             CcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          461 HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       461 ~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                      ......+|...|++++|+|++++||+++.|+ +++|.
T Consensus       298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            3444567899999999999999999999554 99996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.4e-32  Score=258.15  Aligned_cols=290  Identities=9%  Similarity=0.068  Sum_probs=210.3

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCc-------cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDK-------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                      -+|++++|  +||+++|++|+.|.       .|++|++..+.........                              
T Consensus        15 ~PV~sv~f--s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~------------------------------   62 (365)
T 4h5i_A           15 YPAYGAKF--LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH------------------------------   62 (365)
T ss_dssp             SCEEEEEE--EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE------------------------------
T ss_pred             CCEEEEEE--eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee------------------------------
Confidence            67999999  57899999987543       5999998765422110000                              


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE------------cCCeEEEEeCccCceeeE
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA------------DDLRINLWNLEISDQCFN  250 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~------------~d~~i~iwd~~~~~~~~~  250 (497)
                                           ......+.+|...+.+++++  ++.+++|            .|+.+++|++........
T Consensus        63 ---------------------~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~  119 (365)
T 4h5i_A           63 ---------------------ILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE  119 (365)
T ss_dssp             ---------------------EEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred             ---------------------eeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence                                 00001126777888877664  4455553            467899999875443333


Q ss_pred             Eeec-CCCccCCCCCCeEEEEEeCCCCcEEEEEe--CCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          251 IVDM-KPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       251 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      .+.. .......++..+..++|+|+| +++++++  .|+.|++||+++++..    ..+.              |...|.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~----~~~~--------------~~~~V~  180 (365)
T 4h5i_A          120 FLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEK----FEIE--------------TRGEVK  180 (365)
T ss_dssp             EEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEE----EEEE--------------CSSCCC
T ss_pred             EeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEE----EEeC--------------CCCceE
Confidence            2211 112234456779999999999 8776554  6899999999987654    2222              346799


Q ss_pred             EEEEeeCCCEEEEEecCeEEEEecCCCCceeee--eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC---
Q 010933          328 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---  402 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---  402 (497)
                      +++|+|+|+++++++++.+++|+..+ ++.+..  ...|...+               .+++|+|+++++++++.|+   
T Consensus       181 ~v~fspdg~~l~s~s~~~~~~~~~~~-~~~~~~~~~~~~~~~v---------------~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          181 DLHFSTDGKVVAYITGSSLEVISTVT-GSCIARKTDFDKNWSL---------------SKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             EEEECTTSSEEEEECSSCEEEEETTT-CCEEEEECCCCTTEEE---------------EEEEEEETTEEEEEEEESSSCC
T ss_pred             EEEEccCCceEEeccceeEEEEEecc-CcceeeeecCCCCCCE---------------EEEEEcCCCCEEEEEecCCcce
Confidence            99999999999999887888888776 444432  33444433               6899999999999999887   


Q ss_pred             -cEEEEEcCCCCcc---eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC--CCCCccc-ccccCCCeEE
Q 010933          403 -LLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHEL-SYNLSSKLLH  474 (497)
Q Consensus       403 -~i~vw~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~--~~~~~~~-~~~~~~~i~~  474 (497)
                       .+++|++......   ...+.+|..+|++++|+|  ++++     ||+|+.|+. ++|.  .++.... ..+|...|++
T Consensus       245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp--dg~~-----lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~  317 (365)
T 4h5i_A          245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM--KGEL-----AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE  317 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT--TSCE-----EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred             eEEeecccccceecceeeeeecCCCCCeEeEEECC--CCCc-----eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence             6888998765432   356788999999999999  7777     999999999 9993  3344444 4679999999


Q ss_pred             EEEecCCCEEEEEe-CCceEEEe
Q 010933          475 LAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       475 l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      |+|+|||++||+|+ ++.++||.
T Consensus       318 v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          318 VTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999 45599996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-31  Score=251.29  Aligned_cols=268  Identities=9%  Similarity=0.040  Sum_probs=213.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|++++|  +|++.+|++++.|+.|++|++.++....                                          
T Consensus        12 ~~v~~~~~--s~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------------------------------   47 (342)
T 1yfq_A           12 DYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------------   47 (342)
T ss_dssp             SCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEE------------------------------------------
T ss_pred             CcEEEEEE--cCCCCEEEEEcCCCeEEEEEeCCCCccc------------------------------------------
Confidence            89999999  5788999999999999999998655110                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeC-ccCceeeEEeecCCCccCC--CCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNL-EISDQCFNIVDMKPSNMDD--LTE  264 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~--~~~  264 (497)
                                     ..... .+|...|.+++|+|+++ .|++| .|+.|++||+ . .++...        +.+  |..
T Consensus        48 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~--------~~~~~~~~  102 (342)
T 1yfq_A           48 ---------------DLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG-SPSFQA--------LTNNEANL  102 (342)
T ss_dssp             ---------------EEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS-SSSEEE--------CBSCCCCS
T ss_pred             ---------------cceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc-CCceEe--------ccccCCCC
Confidence                           11112 47889999999999999 99999 9999999999 7 443322        567  999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccC---------CcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ---------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  335 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  335 (497)
                      .|.+++|+| + .+|++++.|+.|++||+++         ++..    ..+.              |...+.+++|+|++
T Consensus       103 ~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~--------------~~~~v~~~~~~~~~  162 (342)
T 1yfq_A          103 GICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTK--------------VKNKIFTMDTNSSR  162 (342)
T ss_dssp             CEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSSS--------------SCCCEEEEEECSSE
T ss_pred             ceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCee----eEEe--------------eCCceEEEEecCCc
Confidence            999999999 7 9999999999999999986         4322    1111              45789999999988


Q ss_pred             CEEEEE-ecCeEEEEecCC-CCceee-eeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 010933          336 QHLLSR-DYMNLKLWDIRM-DSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       336 ~~l~~~-~~~~i~lwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~  411 (497)
                        ++++ .++.|++||++. ...... ....+...               +.+++|+| ++++|++++.||.|++|+++.
T Consensus       163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~  225 (342)
T 1yfq_A          163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---------------IRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---------------EEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             --EEEEeCCCeEEEEECCccccccceeeecCCCCc---------------eeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence              5555 569999999985 333222 22233332               26899999 999999999999999999988


Q ss_pred             C-----CcceEEEeccCc---------ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCccccccc-CCCeE
Q 010933          412 G-----SAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNL-SSKLL  473 (497)
Q Consensus       412 ~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~-~~~i~  473 (497)
                      .     ......+..|..         ++.+++++|  ++.+     |++++.|+. ++|  ..++.......| ..+|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  298 (342)
T 1yfq_A          226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKF-----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV  298 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred             CCcccccccceeeecccccccccccceeEEEEEEcC--CCCE-----EEEecCCceEEEEcCccHhHhhhhhcccCCCce
Confidence            7     355688888866         999999998  6666     999999999 999  334455566777 99999


Q ss_pred             EEEEecCCCEEEEEeCCce
Q 010933          474 HLAWHPTTNLIACANGNSL  492 (497)
Q Consensus       474 ~l~~~p~~~~la~~~~~~~  492 (497)
                      +++  |++++||+++.|+.
T Consensus       299 ~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          299 KIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EEE--ECSSEEEEEEECTH
T ss_pred             Eec--CCCCeEEEEecCCc
Confidence            999  99999999996653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=267.78  Aligned_cols=302  Identities=13%  Similarity=0.195  Sum_probs=224.0

Q ss_pred             EEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cccCcccccccccccccceeEEEE
Q 010933           39 EFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSLEIEEKINRVRW  117 (497)
Q Consensus        39 ~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~i~~l~~  117 (497)
                      .|+|+++.+++++      .|+.+.                        +.+..+ .+|.            +.|++++|
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g------------------------~~~~~~~~~h~------------~~V~~~~~   71 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRG------------------------KLIATLMENEP------------NSITSSAV   71 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCC------------------------CEEEEECTTTT------------SCEEEEEE
T ss_pred             hcCCccccccccc------cccccc------------------------eEEeeeccCCC------------CceEEEEE
Confidence            4789998888765      376433                        346667 8898            89999999


Q ss_pred             EecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEe
Q 010933          118 CAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN  196 (497)
Q Consensus       118 ~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (497)
                        +| ++.+|++++.|++|++||+.+......                                                
T Consensus        72 --s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------------------------  101 (437)
T 3gre_A           72 --SPGETPYLITGSDQGVIKIWNLKEIIVGEV------------------------------------------------  101 (437)
T ss_dssp             --ECSSSCEEEEEETTSEEEEEEHHHHHTTCC------------------------------------------------
T ss_pred             --CCCCCCEEEEecCCceEEEeECcccccCcc------------------------------------------------
Confidence              57 889999999999999999976331100                                                


Q ss_pred             ecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc--cCceeeEEeecC---CCccCC--CCCCeEE
Q 010933          197 VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMK---PSNMDD--LTEVITS  268 (497)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~--~~~~~~~~~~~~---~~~~~~--~~~~i~~  268 (497)
                            .++...  ..|...|.+++|+|+++.|++| .|+.|++||++  ..++........   ...+..  +...+.+
T Consensus       102 ------~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  173 (437)
T 3gre_A          102 ------YSSSLT--YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR  173 (437)
T ss_dssp             ------CSCSEE--EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred             ------cceeee--ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence                  001121  2689999999999999999999 99999999995  122222211100   001222  5677777


Q ss_pred             EE--EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          269 AE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       269 ~~--~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      +.  +++++ .+|++++.|+.|++||+++++..    ..+..           ..|...|++++|+|++++|++|+ |+.
T Consensus       174 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~-----------~~h~~~v~~~~~s~~~~~l~s~~~dg~  237 (437)
T 3gre_A          174 MRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIEN-----------SPRHGAVSSICIDEECCVLILGTTRGI  237 (437)
T ss_dssp             EEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEEC-----------CGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEcc-----------CCCCCceEEEEECCCCCEEEEEcCCCe
Confidence            77  56888 99999999999999999987654    33333           12567899999999999999986 499


Q ss_pred             EEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEc----CCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          346 LKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS----GDGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      |++||++. ++++..+. .|...+               ++++|+    |++++|++|+.||.|++||+.+++. ...+.
T Consensus       238 i~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~  300 (437)
T 3gre_A          238 IDIWDIRF-NVLIRSWSFGDHAPI---------------THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC-QYAFI  300 (437)
T ss_dssp             EEEEETTT-TEEEEEEBCTTCEEE---------------EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE-EEEEE
T ss_pred             EEEEEcCC-ccEEEEEecCCCCce---------------EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE-EEEEE
Confidence            99999997 88888775 454433               678555    5688999999999999999998854 48889


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccc--cCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYN--LSSKLLHLAWHPTTNLIACAN-GNSLFFHY  496 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~--~~~~i~~l~~~p~~~~la~~~-~~~~~i~~  496 (497)
                      +|...+..+.+++.  +..     +               ......+  |...|++++|+ ++++|++|+ ++.+++|+
T Consensus       301 ~~~~~~~~~~~~~~--~~~-----l---------------~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          301 NSDEQPSMEHFLPI--EKG-----L---------------EELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             SSSSCCCGGGGSCB--CSS-----G---------------GGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred             cCCCCCccceeccc--ccc-----c---------------ccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence            99998888888873  222     1               0111223  77789999999 788899988 66699997

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.3e-31  Score=255.99  Aligned_cols=261  Identities=14%  Similarity=0.156  Sum_probs=170.3

Q ss_pred             CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCC
Q 010933          121 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  200 (497)
Q Consensus       121 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (497)
                      +++.++++++.|++|++||+..+......                                                   
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~---------------------------------------------------  127 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQH---------------------------------------------------  127 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEE---------------------------------------------------
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceee---------------------------------------------------
Confidence            45668999999999999999877643211                                                   


Q ss_pred             ccceeeeeeccCCCCCeeEEEeCC--------CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          201 VHARCQKVYPHAHDFNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       201 ~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                          ++.. +.+|...|++++|+|        ++++|++| .|++|+|||++..+....        +..|...+.+++|
T Consensus       128 ----~~~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~  194 (393)
T 4gq1_A          128 ----VLGG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQF  194 (393)
T ss_dssp             ----EECT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEE
T ss_pred             ----eecc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEE
Confidence                1111 379999999999997        78999999 999999999984444433        4578899999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccc--------ccccCCccccccccccccEEEEe-eCCCEEEEEe
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA--------AESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD  342 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~  342 (497)
                      +|++..+|++++.|+.|++||+++++...........+        ...........+|...+.++.|+ |+++.|++++
T Consensus       195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s  274 (393)
T 4gq1_A          195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC  274 (393)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred             CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence            99874689999999999999999876542211111000        00011111235678899999997 7999999986


Q ss_pred             -cCeEEEEecCCCCceeeeeeeccccccccccc------CCCCCccceeEEEEcC--CCCEEEEEeCCCcEEEEEcCCCC
Q 010933          343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL------YNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                       |+.+++||+.. ++....+..|...+......      ......   ....|+|  ++.++++|+.||.|++||+.+++
T Consensus       275 ~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~  350 (393)
T 4gq1_A          275 KSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSL---LGACPHPRYMDYFATAHSQHGLIQLINTYEKD  350 (393)
T ss_dssp             TTSEEEEEEC--------------------CCSCSEEEECSSCCS---SCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred             CCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcc---eeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence             49999999986 66666555554332111100      000011   1344544  45577788899999999998874


Q ss_pred             cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceE
Q 010933          414 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF  493 (497)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~  493 (497)
                      .. ..                                              ..+|..+|++|+|||||++||+++++++.
T Consensus       351 ~~-~~----------------------------------------------~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          351 SN-SI----------------------------------------------PIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             CC-EE----------------------------------------------EEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             EE-EE----------------------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            43 11                                              12344588999999999999999999998


Q ss_pred             EEe
Q 010933          494 FHY  496 (497)
Q Consensus       494 i~~  496 (497)
                      +|.
T Consensus       384 lvr  386 (393)
T 4gq1_A          384 LTR  386 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-32  Score=258.26  Aligned_cols=210  Identities=11%  Similarity=0.139  Sum_probs=161.1

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|.+.|++++|+|+|++||+|+.|+.|++||+.+++.                    +.....+.+|.           
T Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~--------------------~~~~~~~~~~~-----------  100 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT--------------------WKQTLVLLRLN-----------  100 (377)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C--------------------CCCEEECCCCS-----------
T ss_pred             ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc--------------------eeeeeEecccC-----------
Confidence            35899999999999999999999999999999987641                    13355677888           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  +|++.+|++++.|+.|++||++.++...                                         
T Consensus       101 -~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------------------------------------  136 (377)
T 3dwl_C          101 -RAATFVRW--SPNEDKFAVGSGARVISVCYFEQENDWW-----------------------------------------  136 (377)
T ss_dssp             -SCEEEEEC--CTTSSCCEEEESSSCEEECCC-----CC-----------------------------------------
T ss_pred             -CceEEEEE--CCCCCEEEEEecCCeEEEEEECCcccce-----------------------------------------
Confidence             88999999  6889999999999999999998765211                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-----------------ceee
Q 010933          189 NMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----------------DQCF  249 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-----------------~~~~  249 (497)
                                      +.+.+ .. |...|.+++|+|+++.|+++ .|+.|++||++..                 +...
T Consensus       137 ----------------~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  199 (377)
T 3dwl_C          137 ----------------VSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC  199 (377)
T ss_dssp             ----------------CCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred             ----------------eeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh
Confidence                            11222 44 89999999999999999999 9999999998521                 1122


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  329 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  329 (497)
                      .       .+ +|...|.+++|+|++ .+|++++.||.|++||+++++........+             .+|...+.++
T Consensus       200 ~-------~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~  257 (377)
T 3dwl_C          200 A-------EY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITV-------------KLSQLPLRSL  257 (377)
T ss_dssp             E-------CC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCE-------------ECSSSCEEEE
T ss_pred             h-------cc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEee-------------cCCCCceEEE
Confidence            2       24 899999999999999 999999999999999999876421111333             3456789999


Q ss_pred             EEeeCCCEEEEEecCeEEEEecC
Q 010933          330 KFANDGQHLLSRDYMNLKLWDIR  352 (497)
Q Consensus       330 ~~s~~g~~l~~~~~~~i~lwd~~  352 (497)
                      +|+|++++|++++++.+.+|+..
T Consensus       258 ~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          258 LWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEEETTEEEEEESSSSEEEECCC
T ss_pred             EEcCCCCEEEEEcCCcEEEEEeC
Confidence            99999999999988666688775

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-31  Score=254.35  Aligned_cols=254  Identities=14%  Similarity=0.106  Sum_probs=191.6

Q ss_pred             cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +|.+.|.+++|+| ++++|++|+.|+.|++||+.+...                     .......+|.           
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------~~~~~~~~~~-----------  163 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI---------------------QVFAKTDSWD-----------  163 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE---------------------EEEECCCCSS-----------
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce---------------------EEEeccCCCC-----------
Confidence            5899999999999 789999999999999999986422                     2222233445           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  +|++.+|++++.|+.|++||+.. +                                            
T Consensus       164 -~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~-~--------------------------------------------  195 (383)
T 3ei3_B          164 -YWYCCVDV--SVSRQMLATGDSTGRLLLLGLDG-H--------------------------------------------  195 (383)
T ss_dssp             -CCEEEEEE--ETTTTEEEEEETTSEEEEEETTS-C--------------------------------------------
T ss_pred             -CCeEEEEE--CCCCCEEEEECCCCCEEEEECCC-C--------------------------------------------
Confidence             77999999  57899999999999999999842 2                                            


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccC---ceeeEEeecCCCccCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~  263 (497)
                                      ++..+ .+|...|.+++|+|+++ ++++| .|+.|++||++..   +.....       + +|.
T Consensus       196 ----------------~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~-~~~  250 (383)
T 3ei3_B          196 ----------------EIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------M-PHE  250 (383)
T ss_dssp             ----------------EEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-------E-ECS
T ss_pred             ----------------EEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-------e-cCC
Confidence                            12222 68899999999999999 88998 9999999999842   333332       2 689


Q ss_pred             CCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCC----ccccccccccccEEEEeeCCCEE
Q 010933          264 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS----KSFFTEIIASISDIKFANDGQHL  338 (497)
Q Consensus       264 ~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~g~~l  338 (497)
                      ..|.+++|+| ++ .+|++++.|+.|++||+++++..    ..+..|......    ....-.....+..++|+|++++ 
T Consensus       251 ~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-  324 (383)
T 3ei3_B          251 KPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-  324 (383)
T ss_dssp             SCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred             CceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence            9999999999 98 99999999999999999987654    333332211000    0000001133445667777766 


Q ss_pred             EEEecCeEEEEecCCCCceeeeeeecc--cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          339 LSRDYMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       339 ~~~~~~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      ..+.|+.|++||+.+ ++++..+.++.  ..+               ..++|+|++++|++|+ ||.|++||+++
T Consensus       325 s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence            223569999999987 88888888753  322               4679999999999997 99999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-31  Score=249.30  Aligned_cols=213  Identities=16%  Similarity=0.214  Sum_probs=171.8

Q ss_pred             ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      .+..+.+|.            +.|++++|  +|++++|++++.|+.|++|++..+..                       
T Consensus         3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------   45 (379)
T 3jrp_A            3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETH-----------------------   45 (379)
T ss_dssp             --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEE-----------------------
T ss_pred             ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcc-----------------------
Confidence            356788998            99999999  68999999999999999999974331                       


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccC
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS  245 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~  245 (497)
                                                         +.+..+ .+|...|.+++|+++  ++.|++| .|+.|++||+. .
T Consensus        46 -----------------------------------~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~   88 (379)
T 3jrp_A           46 -----------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-N   88 (379)
T ss_dssp             -----------------------------------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE-T
T ss_pred             -----------------------------------eeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC-C
Confidence                                               122223 789999999999987  9999999 99999999999 4


Q ss_pred             ce--eeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933          246 DQ--CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  321 (497)
Q Consensus       246 ~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (497)
                      ++  ....       +..|...|.+++|+|+  + .+|++++.|+.|++||++++.....  ..             +..
T Consensus        89 ~~~~~~~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~--~~-------------~~~  145 (379)
T 3jrp_A           89 GRWSQIAV-------HAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--II-------------IDA  145 (379)
T ss_dssp             TEEEEEEE-------ECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCE--EE-------------EEC
T ss_pred             CceeEeee-------ecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceee--EE-------------ecC
Confidence            43  2222       5679999999999999  8 9999999999999999987643210  11             234


Q ss_pred             ccccccEEEEee-------------CCCEEEEEe-cCeEEEEecCCCCc---eeeeeeecccccccccccCCCCCcccee
Q 010933          322 IIASISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKF  384 (497)
Q Consensus       322 ~~~~i~~~~~s~-------------~g~~l~~~~-~~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (497)
                      |...|.+++|+|             ++.+|++++ ++.|++||++....   ....+.+|...+               +
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~  210 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------R  210 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------E
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------e
Confidence            567899999999             689999986 59999999986322   345666777654               7


Q ss_pred             EEEEcCC---CCEEEEEeCCCcEEEEEcCCCC
Q 010933          385 ECSVSGD---GLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       385 ~~~~s~~---~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      +++|+|+   +++|++++.||.|++||+.++.
T Consensus       211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence            9999999   8999999999999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-30  Score=254.40  Aligned_cols=238  Identities=14%  Similarity=0.071  Sum_probs=173.2

Q ss_pred             cceeEEEEEecCCCCEE-EEEeCCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l-~s~s~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      +.|.+++|  +|++++| ++++.|+.|++|++.  +++.....                                     
T Consensus       103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-------------------------------------  143 (450)
T 2vdu_B          103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-------------------------------------  143 (450)
T ss_dssp             CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-------------------------------------
T ss_pred             CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeee-------------------------------------
Confidence            67999999  6899996 888899999999998  55432210                                     


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                          .  ...|...|.+++|+|+++.|++| .++.|++|++.... ....   ....+.+|...
T Consensus       144 --------------------~--~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~-~~~~---~~~~~~~h~~~  197 (450)
T 2vdu_B          144 --------------------K--RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP-EEKF---TQEPILGHVSM  197 (450)
T ss_dssp             --------------------E--EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC-CSSC---CCCCSEECSSC
T ss_pred             --------------------e--cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc-cccc---cceeeecccCc
Confidence                                0  02567889999999999999999 99999999998333 2210   00136789999


Q ss_pred             eEEEEEeCC---CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          266 ITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       266 i~~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      |.+++|+|+   + .+|++++.|+.|++||+++++..    ..+            +.+|...|.+++|+ ++++|++++
T Consensus       198 v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~~------------~~~h~~~v~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          198 LTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DKW------------LFGHKHFVSSICCG-KDYLLLSAG  259 (450)
T ss_dssp             EEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EEE------------CCCCSSCEEEEEEC-STTEEEEEE
T ss_pred             eEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----eee------------ecCCCCceEEEEEC-CCCEEEEEe
Confidence            999999999   8 99999999999999999887543    221            12456889999999 999999986


Q ss_pred             -cCeEEEEecCCCCceeeeeeeccccccccccc-----------CCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 010933          343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH  409 (497)
Q Consensus       343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~  409 (497)
                       |+.|++||+++ ++++..+..+... ..++..           .....-..+.+++|+|++++|++++ .|+.|++|++
T Consensus       260 ~d~~v~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          260 GDDKIFAWDWKT-GKNLSTFDYNSLI-KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSEEEEEETTT-CCEEEEEECHHHH-GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             CCCeEEEEECCC-CcEeeeecchhhh-hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence             59999999987 8888877654311 000000           0001112347899999999999999 8999999999


Q ss_pred             --CCCC--cceEEEeccCcceeeeEeec
Q 010933          410 --GVGS--AGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       410 --~~~~--~~~~~~~~~~~~v~~~~~~~  433 (497)
                        .++.  .....+..| ..+.++++++
T Consensus       338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          338 SEKQKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             CSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred             ccCCCCceeeccEeccC-CceEEEEecC
Confidence              4332  222344444 5555555554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-31  Score=247.60  Aligned_cols=261  Identities=16%  Similarity=0.134  Sum_probs=191.3

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  117 (497)
Q Consensus        38 i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~  117 (497)
                      ..+.+++++||+|+.||.|++||+.+++.                       +..+.  .            ..|.++.|
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~-----------------------~~~~~--~------------~~v~~~~~   84 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKT-----------------------ITTIT--T------------PNPRTGGE   84 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSC-----------------------EEEEE--E------------ECCCTTCC
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcE-----------------------EEEEe--c------------CCceeeee
Confidence            34456889999999999999999988753                       33333  2            55788888


Q ss_pred             EecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933          118 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  197 (497)
Q Consensus       118 ~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (497)
                      +  |+   +++++.|++|++|+....                                                +.+|+.
T Consensus        85 ~--~~---~~s~s~D~~i~~w~~~~~------------------------------------------------~~~~~~  111 (343)
T 3lrv_A           85 H--PA---IISRGPCNRLLLLYPGNQ------------------------------------------------ITILDS  111 (343)
T ss_dssp             C--CS---EEEECSTTEEEEEETTTE------------------------------------------------EEEEET
T ss_pred             C--Cc---eEEecCCCeEEEEEccCc------------------------------------------------eEEeec
Confidence            4  44   999999999999997642                                                234444


Q ss_pred             cCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC
Q 010933          198 GNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  274 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  274 (497)
                      ...   +.++.+..+|...|.+++|+|  +++++++| .|+.|++||++ .++.....      ...+...+.+++|+|+
T Consensus       112 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~------~~~~~~~i~~~~~~pd  181 (343)
T 3lrv_A          112 KTN---KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVH------SAKSDVEYSSGVLHKD  181 (343)
T ss_dssp             TTC---CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEE------CCCSSCCCCEEEECTT
T ss_pred             CCc---ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEE------ecCCCCceEEEEECCC
Confidence            422   233333357888999999999  99999999 99999999999 45454432      2345668999999999


Q ss_pred             CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCC
Q 010933          275 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD  354 (497)
Q Consensus       275 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~  354 (497)
                      + .+|++|+.||.|++||+++++...   ..+..            +|...|++++|+|+|.+|++++++.|++||++. 
T Consensus       182 g-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~-  244 (343)
T 3lrv_A          182 S-LLLALYSPDGILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK-  244 (343)
T ss_dssp             S-CEEEEECTTSCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTS-
T ss_pred             C-CEEEEEcCCCEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC-
Confidence            9 999999999999999999875431   11211            256899999999999999999888999999987 


Q ss_pred             Cceeeeeee---cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcceEEEeccCcceeeeE
Q 010933          355 STPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKNENRKPI  430 (497)
Q Consensus       355 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~  430 (497)
                      .+.+..+..   |...+.         .    .+++|+|++++|++++. |+.|++|++....... ..    .++..+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~-~~----~~~~~~~  306 (343)
T 3lrv_A          245 DVGTLAYPTYTIPEFKTG---------T----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW-TK----DEESALC  306 (343)
T ss_dssp             STTCBSSCCCBC-----C---------C----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE-EE----EEEEECC
T ss_pred             CCcceeeccccccccccc---------c----eEEEECCCCCEEEEecCCCCcEEEEEEcccccce-Ee----cCceeEe
Confidence            665555443   222210         0    25999999999999998 9999999997664431 11    4455555


Q ss_pred             eec
Q 010933          431 LQA  433 (497)
Q Consensus       431 ~~~  433 (497)
                      +.+
T Consensus       307 ~~~  309 (343)
T 3lrv_A          307 LQS  309 (343)
T ss_dssp             C--
T ss_pred             cCc
Confidence            554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.4e-31  Score=255.62  Aligned_cols=266  Identities=16%  Similarity=0.248  Sum_probs=204.0

Q ss_pred             cccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .+.|.+.|++++|+|+ +.+||+|+.||.|+||++......             +........+..+.+|.         
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-------------~~~~~~~~~~~~~~~h~---------  181 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-------------PEPSGECQPDLRLRGHQ---------  181 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-------------CCTTCCCCCSEEEECCS---------
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-------------cCccccCCCcEEecCCC---------
Confidence            3568999999999997 789999999999999999763210             00001134567788898         


Q ss_pred             ccccceeEEEEEecCCCC-EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          107 EIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                         ..|++++|  ++++. +|++++.||.|++|++..+.....                                     
T Consensus       182 ---~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------  219 (430)
T 2xyi_A          182 ---KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHR-------------------------------------  219 (430)
T ss_dssp             ---SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGG-------------------------------------
T ss_pred             ---CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-------------------------------------
Confidence               88999999  57777 999999999999999986431110                                     


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCc--eeeEEeecCCCccCC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDD  261 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~  261 (497)
                                      ...+...+ .+|...|.+++|+| ++..|+++ .|+.|++||++...  .....       +..
T Consensus       220 ----------------~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~-------~~~  275 (430)
T 2xyi_A          220 ----------------VIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT-------VDA  275 (430)
T ss_dssp             ----------------EEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE-------EEC
T ss_pred             ----------------eeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE-------eec
Confidence                            00112222 68999999999999 67788888 99999999999442  23332       457


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEE
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS  340 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~  340 (497)
                      |...|++++|+|++..+|++++.||.|++||+++....   ...+             ..|...|.+++|+|+++ +|++
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~-------------~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSF-------------ESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEE-------------ECCSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEe-------------ecCCCCEEEEEECCCCCCEEEE
Confidence            89999999999998458999999999999999974321   1333             33568899999999996 5777


Q ss_pred             Ee-cCeEEEEecCCCC-------------ceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEE
Q 010933          341 RD-YMNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLR  405 (497)
Q Consensus       341 ~~-~~~i~lwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~  405 (497)
                      ++ ++.|++||+...+             ..+..+.+|...+               ++++|+|+++ +|++++.||.|+
T Consensus       340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~dg~i~  404 (430)
T 2xyi_A          340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSEDNIMQ  404 (430)
T ss_dssp             EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETTSEEE
T ss_pred             EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECCCCEE
Confidence            64 5999999997522             4555566666543               7999999999 899999999999


Q ss_pred             EEEcCCC
Q 010933          406 IFSHGVG  412 (497)
Q Consensus       406 vw~~~~~  412 (497)
                      ||++...
T Consensus       405 iw~~~~~  411 (430)
T 2xyi_A          405 VWQMAEN  411 (430)
T ss_dssp             EEEECHH
T ss_pred             EeEcccc
Confidence            9999753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.6e-30  Score=244.85  Aligned_cols=279  Identities=14%  Similarity=0.154  Sum_probs=214.5

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCC---CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  164 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~---~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (497)
                      +.+..+.+|.            +.|++++|  +|+   +.+|++++.|+.|++||+.+....                  
T Consensus        30 ~~~~~~~~h~------------~~v~~~~~--~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~------------------   77 (368)
T 3mmy_A           30 KDIEVTSSPD------------DSIGCLSF--SPPTLPGNFLIAGSWANDVRCWEVQDSGQT------------------   77 (368)
T ss_dssp             CCEECSSCCS------------SCEEEEEE--CCTTSSSEEEEEEETTSEEEEEEECTTSCE------------------
T ss_pred             ceeEeccCCC------------CceEEEEE--cCCCCCceEEEEECCCCcEEEEEcCCCCce------------------
Confidence            4466788998            89999999  566   589999999999999999862211                  


Q ss_pred             cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933          165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  243 (497)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~  243 (497)
                                                              .... +.+|...|.+++|+|+++.|+++ .|+.|++||++
T Consensus        78 ----------------------------------------~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           78 ----------------------------------------IPKA-QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             ----------------------------------------EEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ----------------------------------------eEEE-eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence                                                    1111 26899999999999999999999 99999999999


Q ss_pred             cCceeeEEeecCCCccCCCCCCeEEEEE--eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933          244 ISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  321 (497)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (497)
                       .++...        +..|...|.+++|  +|++ .+|++++.||.|++||+++++..    ..+..             
T Consensus       117 -~~~~~~--------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~-------------  169 (368)
T 3mmy_A          117 -SNQAIQ--------IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM----MVLQL-------------  169 (368)
T ss_dssp             -TTEEEE--------EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS----EEEEC-------------
T ss_pred             -CCCcee--------eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE----EEEec-------------
Confidence             555544        3468999999999  8898 89999999999999999987654    44443             


Q ss_pred             ccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCE----EE
Q 010933          322 IIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH----FA  396 (497)
Q Consensus       322 ~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~  396 (497)
                       ...+.++.+.  ...++++ .++.+++|+++...............              ....+++.++...    ++
T Consensus       170 -~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          170 -PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             -SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEEEEECTTSCEEEEE
T ss_pred             -CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEEEcccCCCCCCeEE
Confidence             1245555554  4466665 56999999998643333333221111              0135666655544    99


Q ss_pred             EEeCCCcEEEEEcCCCC--cceEEEeccCc------------ceeeeEeecCCCcccccccceeEeeccCc-eec--CCC
Q 010933          397 TGSYSNLLRIFSHGVGS--AGGITVEAGKN------------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSS  459 (497)
Q Consensus       397 s~~~dg~i~vw~~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~  459 (497)
                      +++.||.|++|++....  .....+.+|..            ++.+++++|  ++.+     |++|+.|+. ++|  ..+
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~-----l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP--VHGT-----LATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTT
T ss_pred             EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec--CCCE-----EEEEccCCeEEEEECCCC
Confidence            99999999999998864  23577888876            799999999  6666     999999999 999  334


Q ss_pred             CCcccccccCCCeEEEEEecCCCEEEEEeCC
Q 010933          460 GHHELSYNLSSKLLHLAWHPTTNLIACANGN  490 (497)
Q Consensus       460 ~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~  490 (497)
                      +.......|...|++++|+|++++||+++.+
T Consensus       306 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          306 TKLKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             cEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence            4555677889999999999999999999865

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5e-32  Score=262.79  Aligned_cols=256  Identities=11%  Similarity=0.077  Sum_probs=184.1

Q ss_pred             cccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ..+|.+.|++|+|+| ++++|++|+.||+|+|||++++..                     ........+.         
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~---------------------~~~~~~~~~~---------  209 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL---------------------RVFASSDTIN---------  209 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE---------------------EEEECCSSCS---------
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce---------------------eEEeccCCCC---------
Confidence            346999999999998 789999999999999999976532                     1112222233         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                         ..+.+++|  ++++.+|++|+.||.|++||+++.....                                       
T Consensus       210 ---~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~~---------------------------------------  245 (435)
T 4e54_B          210 ---IWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELWN---------------------------------------  245 (435)
T ss_dssp             ---CCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCCC---------------------------------------
T ss_pred             ---ccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeEE---------------------------------------
Confidence               56788999  6889999999999999999986433111                                       


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                             +.+|...|.+++|+|+++ ++++| .|+.|++||++........     ....+|..
T Consensus       246 -----------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~h~~  297 (435)
T 4e54_B          246 -----------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSLPHRH  297 (435)
T ss_dssp             -----------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCCBCSS
T ss_pred             -----------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEeeeccc
Confidence                                   268999999999999876 56777 9999999999843322211     12467999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE---
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---  341 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---  341 (497)
                      .|++++|+|++ .+|++++.||.|++||++++...    ..+..|......       ......+.|+|++.+++++   
T Consensus       298 ~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  365 (435)
T 4e54_B          298 PVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQ-------HLTPIKAAWHPRYNLIVVGRYP  365 (435)
T ss_dssp             CEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCS-------SSCCCBCEECSSSSCEEEECCC
T ss_pred             cccceeECCCC-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccc-------cceeEEEEEcCCCCEEEEEEcC
Confidence            99999999999 99999999999999999987654    222222111100       0112334455555555443   


Q ss_pred             ---------ec-CeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEE-EEcCCCCEEEEEeCCCcEEEEEc
Q 010933          342 ---------DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       342 ---------~~-~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                               .+ +.|++||..+ ++.+..+. .|...+               .++ +|+|+|++|++|+ |+.|+||++
T Consensus       366 d~~~~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          366 DPNFKSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             CTTSCCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred             CCCeEEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence                     12 6799999987 77777664 444433               355 7999999999876 789999999


Q ss_pred             CCCCc
Q 010933          410 GVGSA  414 (497)
Q Consensus       410 ~~~~~  414 (497)
                      ++++.
T Consensus       429 ~~gk~  433 (435)
T 4e54_B          429 QEART  433 (435)
T ss_dssp             C----
T ss_pred             CcCee
Confidence            98743

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.9e-30  Score=248.70  Aligned_cols=264  Identities=14%  Similarity=0.202  Sum_probs=216.3

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.+.|.+++|+  +++|++|+.||.|++||+.+++                       .+..+.+|.            
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~------------  199 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CIHTLYGHT------------  199 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EEEEECCCC------------
Confidence            589999999998  5699999999999999998764                       367788898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|.    +..+++++.|+.|++||+.+++...                                          
T Consensus       200 ~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~------------------------------------------  233 (445)
T 2ovr_B          200 STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLH------------------------------------------  233 (445)
T ss_dssp             SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEE------------------------------------------
T ss_pred             CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEE------------------------------------------
Confidence            889999993    4589999999999999998765322                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                        .+ .+|...|.++++  +++.+++| .|+.|++||++ .++....       +.+|...|.+
T Consensus       234 ------------------~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~-------~~~~~~~v~~  284 (445)
T 2ovr_B          234 ------------------VL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHT-------LQGHTNRVYS  284 (445)
T ss_dssp             ------------------EE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEE-------ECCCSSCEEE
T ss_pred             ------------------EE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEE-------ecCCCCceEE
Confidence                              22 688899999999  67889998 99999999998 4555554       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|  ++ ..+++++.|+.|++||+++++..    ..+..             |...+.++.+  +++++++++ ||.|+
T Consensus       285 ~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~~~~~--~~~~l~~~~~dg~i~  342 (445)
T 2ovr_B          285 LQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HTLTG-------------HQSLTSGMEL--KDNILVSGNADSTVK  342 (445)
T ss_dssp             EEE--CS-SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CCSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred             EEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EEEcC-------------CcccEEEEEE--eCCEEEEEeCCCeEE
Confidence            999  56 89999999999999999987654    33333             4456776665  567888885 59999


Q ss_pred             EEecCCCCceeeeeee---cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE-----
Q 010933          348 LWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV-----  419 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~-----  419 (497)
                      +||+++ ++.+..+..   |...+               ++++|+  +++|++|+.||.|++||+.+++.+ ..+     
T Consensus       343 vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~  403 (445)
T 2ovr_B          343 IWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTGEFI-RNLVTLES  403 (445)
T ss_dssp             EEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EEEEECTT
T ss_pred             EEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCCcee-eeeecccc
Confidence            999986 888888876   44332               678885  689999999999999999998655 555     


Q ss_pred             eccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933          420 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  453 (497)
Q Consensus       420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~  453 (497)
                      ..|.+++++++++|  ++..     +++|+.||.
T Consensus       404 ~~~~~~v~~~~~s~--~~~~-----la~~~~dg~  430 (445)
T 2ovr_B          404 GGSGGVVWRIRASN--TKLV-----CAVGSRNGT  430 (445)
T ss_dssp             GGGTCEEEEEEECS--SEEE-----EEEECSSSS
T ss_pred             CCCCceEEEEEecC--CEEE-----EEEcccCCC
Confidence            47889999999998  5666     899998884

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.4e-30  Score=239.08  Aligned_cols=246  Identities=19%  Similarity=0.294  Sum_probs=198.9

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|...|++++|+|+|++||+|+.||.|+|||+++++                       .+..+.+|.            
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----------------------~~~~~~~h~------------  109 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS------------  109 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS------------
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----------------------eEEEecCcc------------
Confidence            578899999999999999999999999999998874                       367788998            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..+.++.+    ++..+++++.++.+++|+......                                            
T Consensus       110 ~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~--------------------------------------------  141 (318)
T 4ggc_A          110 ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH--------------------------------------------  141 (318)
T ss_dssp             SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC--------------------------------------------
T ss_pred             ceEEEeec----CCCEEEEEecCCceEeeecCCCce--------------------------------------------
Confidence            77777665    356999999999999999876441                                            


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     .+..+ .+|...+..+.++++++.++++ .|+.|++||+++........    .....+...|.+
T Consensus       142 ---------------~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~v~~  201 (318)
T 4ggc_A          142 ---------------HVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQGAVKA  201 (318)
T ss_dssp             ---------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----EEECCCCSCEEE
T ss_pred             ---------------eEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----eeecccCCceEE
Confidence                           12222 6889999999999999999999 99999999998433211110    124567889999


Q ss_pred             EEEeCCCCcEEE--EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c
Q 010933          269 AEFHPIYCNLLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y  343 (497)
Q Consensus       269 ~~~~~~~~~~l~--~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~  343 (497)
                      ++++|.+...+.  +++.++.|++||.+.....    ....              +...+..+.|+|++..+++++   |
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~~--------------~~~~v~~~~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVD--------------AHSQVCSILWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             EEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred             EEecCCCCcEEEEEecCCCCEEEEEeccccccc----cccc--------------ceeeeeeeeecccccceEEEEEcCC
Confidence            999998755543  5567899999999876533    1111              236789999999999887753   5


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      +.|++||+++ ++++.++.+|...+               ++++|+|++++|++|+.||+|+|||+.+.
T Consensus       264 ~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          264 NQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999999997 89999999998865               79999999999999999999999999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=2e-30  Score=249.04  Aligned_cols=255  Identities=13%  Similarity=0.129  Sum_probs=199.8

Q ss_pred             ccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .+|.+.|++++|+| ++++||+|+.||.|+|||+.++...                ....+.+..+.+|.          
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~----------------~~~~~~~~~~~~h~----------  131 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV----------------LPLREPVITLEGHT----------  131 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS----------------SCBCSCSEEEECCS----------
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc----------------cccCCceEEecCCC----------
Confidence            36999999999999 9999999999999999999876320                00113466788898          


Q ss_pred             cccceeEEEEEecCCC-CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          108 IEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                        ..|.+++|  +|++ .+|++++.|+.|++||+.+++...                                       
T Consensus       132 --~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------------------------  168 (402)
T 2aq5_A          132 --KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVL---------------------------------------  168 (402)
T ss_dssp             --SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEE---------------------------------------
T ss_pred             --CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccE---------------------------------------
Confidence              89999999  5776 699999999999999998766332                                       


Q ss_pred             ccCcceEEEeecCCccceeeeeec-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc-CCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLT  263 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~  263 (497)
                                           .+. ..|...|.+++|+|+++.|+++ .|+.|++||++ .++....       + ..|.
T Consensus       169 ---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~-------~~~~~~  219 (402)
T 2aq5_A          169 ---------------------TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAE-------KDRPHE  219 (402)
T ss_dssp             ---------------------EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEE-------EECSSC
T ss_pred             ---------------------EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeee-------eccCCC
Confidence                                 111 4788999999999999999999 99999999999 4555544       3 5676


Q ss_pred             CC-eEEEEEeCCCCcEEEEE---eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          264 EV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       264 ~~-i~~~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      .. +.+++|+|++ .+|+++   +.|+.|++||+++++...   .....            .|...+.+++|+|++++|+
T Consensus       220 ~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~~------------~~~~~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          220 GTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQEL------------DTSSGVLLPFFDPDTNIVY  283 (402)
T ss_dssp             SSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEEC------------CCCSSCEEEEEETTTTEEE
T ss_pred             CCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc---eEEec------------cCCCceeEEEEcCCCCEEE
Confidence            65 8999999999 899998   789999999999865321   11111            2346799999999999986


Q ss_pred             E-Ee-cCeEEEEecCCCCceeeeeeecc--cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          340 S-RD-YMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       340 ~-~~-~~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      + |+ |+.|++||+......+..+..+.  ..+               .+++|+|++.++++  .++.+++|++.++..
T Consensus       284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          284 LCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEETTCSCEEEEEECSSTTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EEEcCCCeEEEEEecCCCcceEeecccccCCcc---------------cceEEeccccccee--cceeEEEEEcCCCcE
Confidence            5 53 69999999987333366666554  322               68999999998874  567999999988644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.3e-30  Score=235.81  Aligned_cols=242  Identities=17%  Similarity=0.255  Sum_probs=196.1

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|.+++|+|++++|++|+.||.|++|++.....                    .+....+.+|.            
T Consensus        57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------------------~~~~~~~~~~~------------  104 (313)
T 3odt_A           57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG--------------------EDPLYTLIGHQ------------  104 (313)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--------------------SCC-CEECCCS------------
T ss_pred             cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--------------------CCcccchhhcc------------
Confidence            5789999999999999999999999999999876431                    23456678888            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|    ++.++++++.|+.|++||  .++                                             
T Consensus       105 ~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~---------------------------------------------  133 (313)
T 3odt_A          105 GNVCSLSF----QDGVVISGSWDKTAKVWK--EGS---------------------------------------------  133 (313)
T ss_dssp             SCEEEEEE----ETTEEEEEETTSEEEEEE--TTE---------------------------------------------
T ss_pred             cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCc---------------------------------------------
Confidence            88999999    356999999999999999  222                                             


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                     .+..+ ..|...+.++.|+| +++.++++ .|+.|++||..   .....+      ...|...+.
T Consensus       134 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~------~~~~~~~i~  188 (313)
T 3odt_A          134 ---------------LVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF------SGIHNDVVR  188 (313)
T ss_dssp             ---------------EEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE------CSSCSSCEE
T ss_pred             ---------------EEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE------eccCcccEE
Confidence                           11222 67889999999988 89999999 99999999944   333331      223889999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  347 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~  347 (497)
                      +++|+|++ . +++++.||.|++||+++++..    ..+.             +|...+.+++|+|++.+++++.++.|+
T Consensus       189 ~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~l~~~~~dg~v~  249 (313)
T 3odt_A          189 HLAVVDDG-H-FISCSNDGLIKLVDMHTGDVL----RTYE-------------GHESFVYCIKLLPNGDIVSCGEDRTVR  249 (313)
T ss_dssp             EEEEEETT-E-EEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEEEEEECTTSCEEEEETTSEEE
T ss_pred             EEEEcCCC-e-EEEccCCCeEEEEECCchhhh----hhhh-------------cCCceEEEEEEecCCCEEEEecCCEEE
Confidence            99999998 6 999999999999999987644    3333             356789999999999644444569999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      +||+++ ++++..+..|...+               ++++|+|+++ +++++.||.|++|++++++..
T Consensus       250 iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          250 IWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             EECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred             EEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence            999987 88888998887654               6899999998 667999999999999886443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=7.2e-30  Score=240.39  Aligned_cols=249  Identities=11%  Similarity=0.113  Sum_probs=175.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.+.|+|++|+|||++||+|+.++ ++||++++++.                       .  ...+.            
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------------------~--~~~~~------------   58 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------------------I--MSQEM------------   58 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------------E--EEEEC------------
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------------e--eeeec------------
Confidence            4889999999999999999998775 78999876532                       1  11121            


Q ss_pred             cceeEEEEEecCCCCEE-EEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      ..+..+++.  +++..+ ++++.|++|++||+.+++...                                         
T Consensus        59 ~~~~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~~~~~-----------------------------------------   95 (355)
T 3vu4_A           59 RHLSKVRML--HRTNYVAFVTGVKEVVHIWDDVKKQDVS-----------------------------------------   95 (355)
T ss_dssp             SCCCEEEEC--TTSSEEEEECSSTTEEEEEETTTTEEEE-----------------------------------------
T ss_pred             CCeEEEEEc--CCCCEEEEEECCccEEEEEECCCCcEEE-----------------------------------------
Confidence            336778884  555666 566788999999998776332                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                         .+  .+...|.+++++++.  ++++.++.|++||+....+.+..       +..   +...
T Consensus        96 -------------------~~--~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~-------~~~---~~~~  142 (355)
T 3vu4_A           96 -------------------RI--KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITD-------DIR---FGGV  142 (355)
T ss_dssp             -------------------EE--ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSC-------CEE---EEEE
T ss_pred             -------------------EE--ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEE-------ecc---CCce
Confidence                               11  345689999998764  55556889999999844233332       222   4445


Q ss_pred             EEEeCCCCcEEEE--EeCCCeEEEEEccCCcccccccceecccccccCC-ccccccccccccEEEEeeCCCEEEEEec-C
Q 010933          269 AEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY-M  344 (497)
Q Consensus       269 ~~~~~~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~  344 (497)
                      +++++ .  ++++  ++.||.|++||+++++..........  .....+ ...+.+|...|.+++|+|+|++|++|+. +
T Consensus       143 ~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~--~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          143 CEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ--QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEET-T--EEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEc-c--EEEEeCCCcCcEEEEEECCCCCcccccccccc--ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence            66777 3  4554  57899999999997642210000000  000011 2345678899999999999999999864 9


Q ss_pred             e-EEEEecCCCCceeeeee-e-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          345 N-LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       345 ~-i~lwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      . |++||+++ ++++..+. + |...+               ++++|+|++++|++++.|+.|++||+..+.
T Consensus       218 ~~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          218 TIIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             SEEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CEEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            8 99999997 88888887 4 76654               799999999999999999999999998753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.7e-29  Score=245.08  Aligned_cols=263  Identities=15%  Similarity=0.257  Sum_probs=213.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|    +++++++|+.||.|++||+.+++..                                           
T Consensus       134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~-------------------------------------------  166 (435)
T 1p22_A          134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECK-------------------------------------------  166 (435)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEE-------------------------------------------
T ss_pred             CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEE-------------------------------------------
Confidence            67888876    6789999999999999999876632                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                       ..+ .+|...|.+++|  +++.|++| .||.|++||+. .++....       +.+|...|.+
T Consensus       167 -----------------~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~-~~~~~~~-------~~~h~~~v~~  218 (435)
T 1p22_A          167 -----------------RIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-TGEMLNT-------LIHHCEAVLH  218 (435)
T ss_dssp             -----------------EEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-SCCEEEE-------ECCCCSCEEE
T ss_pred             -----------------EEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC-CCcEEEE-------EcCCCCcEEE
Confidence                             222 789999999998  78899999 99999999999 4555554       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|++   ..+++++.||.|++||+++++..    ....          .+.+|...|.+++|  +++++++|+ |+.|+
T Consensus       219 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----~~~~----------~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~  279 (435)
T 1p22_A          219 LRFNN---GMMVTCSKDRSIAVWDMASPTDI----TLRR----------VLVGHRAAVNVVDF--DDKYIVSASGDRTIK  279 (435)
T ss_dssp             EECCT---TEEEEEETTSCEEEEECSSSSCC----EEEE----------EECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             EEEcC---CEEEEeeCCCcEEEEeCCCCCCc----eeee----------EecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence            99974   58999999999999999886533    1111          12446688999988  678999885 59999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||+++ ++.+..+.+|...+               .+++|  ++++|++|+.||.|++||+.+++. ...+.+|..++.
T Consensus       280 vwd~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~  340 (435)
T 1p22_A          280 VWNTST-CEFVRTLNGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVR  340 (435)
T ss_dssp             EEETTT-CCEEEEEECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEE
T ss_pred             EEECCc-CcEEEEEcCCCCcE---------------EEEEe--CCCEEEEEeCCCeEEEEECCCCCE-EEEEeCCcCcEE
Confidence            999987 88899999888754               56777  578999999999999999998855 488999999999


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eecCC--CC---------CcccccccCCCeEEEEEecCCCEEEEEe-CCceEE
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SG---------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  494 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~---------~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i  494 (497)
                      ++++    ++..     +++|+.||. ++|..  +.         ......+|...|++++|  ++.+|++++ ++.+++
T Consensus       341 ~~~~----~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          341 CIRF----DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             EEEC----CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             EEEe----cCCE-----EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence            9998    3444     999999999 99921  11         33456689999999999  788899998 555999


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |+
T Consensus       410 wd  411 (435)
T 1p22_A          410 WD  411 (435)
T ss_dssp             EC
T ss_pred             EE
Confidence            96

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-31  Score=256.60  Aligned_cols=288  Identities=8%  Similarity=0.011  Sum_probs=203.9

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|||+++|+++.|++|+  |...++..   . ...                        ..+....+.++
T Consensus        16 ~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~-gh~------------------------~~v~~V~FsPd   63 (588)
T 2j04_A           16 DWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---N-CNS------------------------KNLFHVKEFPL   63 (588)
T ss_dssp             SSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---S-SBG------------------------GGTEEEEEECC
T ss_pred             ccEEEEEE--CCCCCEEEEEcCCceee--ccccccee---c-CCC------------------------ccEEEEEECCC
Confidence            88999999  79999999999999999  64433322   1 111                        11222223333


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC----
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE----  264 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----  264 (497)
                      +..+.|++...   +....+...|...|.+++|+|+|+.|+++ .||.|++||.+ .  ....       +. |..    
T Consensus        64 g~~~~~~~~~~---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-~--~l~~-------l~-~~~~~~~  129 (588)
T 2j04_A           64 EFENKLDFELA---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-K--MLTN-------LD-SKGNLSS  129 (588)
T ss_dssp             CCCCTTTTSCC---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-E--EEEE-------CC-CSSCSTT
T ss_pred             CCcceEEEEeC---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-c--eeee-------cc-CCCcccc
Confidence            33444444422   12122212668899999999999999999 99999999965 2  4443       44 444    


Q ss_pred             -CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc---ccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          265 -VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       265 -~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                       .+.+++|+|+| ++||+|+.||+|++||+.++.....   ....+..+         ..+|...|.+++|+|+| ++++
T Consensus       130 ~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~---------~~gh~~~V~sVawSPdg-Laas  198 (588)
T 2j04_A          130 RTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS---------DAGSKDWVTHIVWYEDV-LVAA  198 (588)
T ss_dssp             TCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS---------CTTCCCCEEEEEEETTE-EEEE
T ss_pred             ccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc---------cccccccEEEEEEcCCc-EEEE
Confidence             59999999999 9999999999999999998743110   11333221         13467899999999999 5555


Q ss_pred             EecCeEEEEecCCCCce---eeeee-ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933          341 RDYMNLKLWDIRMDSTP---VATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  416 (497)
Q Consensus       341 ~~~~~i~lwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~  416 (497)
                      +.|+.|++||+.. ++.   ..+++ +|...+               .+++|+  |+.||+++ ++.|++||+.+++.. 
T Consensus       199 s~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V---------------~svaFs--g~~LASa~-~~tIkLWd~~~~~~~-  258 (588)
T 2j04_A          199 LSNNSVFSMTVSA-SSHQPVSRMIQNASRRKI---------------TDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS-  258 (588)
T ss_dssp             ETTCCEEEECCCS-SSSCCCEEEEECCCSSCC---------------CCEEEE--TTEEEEEC-SSEEEEEETTTTEEE-
T ss_pred             eCCCeEEEEECCC-CccccceeeecccccCcE---------------EEEEEE--CCEEEEEe-CCeEEEEECCCCeEE-
Confidence            6779999999975 442   24563 665544               689999  68999998 699999999976443 


Q ss_pred             EEEeccCcceeeeEe--ecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933          417 ITVEAGKNENRKPIL--QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  494 (497)
Q Consensus       417 ~~~~~~~~~v~~~~~--~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i  494 (497)
                      ....+|...+..+++  ++  ++..     +++++.+|.++|...              .++++|++..+|.+ ++.+++
T Consensus       259 ~~~~gh~~~V~~va~~~s~--d~~~-----La~a~edG~klw~~d--------------~~~~spd~~l~a~~-d~~v~l  316 (588)
T 2j04_A          259 SLKTGSLENFHIIPLNHEK--ESTI-----LLMSNKTSYKVLLED--------------ELHVTADNIIAPYL-EKKFKK  316 (588)
T ss_dssp             EEECSCCSCCCEEEETTCS--SCEE-----EEECSSCEEEEEESS--------------SEEEECCCSSHHHH-HHHHHH
T ss_pred             EEEcCCCceEEEEEeeeCC--CCCE-----EEEEcCCCCEEEeec--------------cEEECCCceEEEEc-CCEEEE
Confidence            223389999999999  76  6666     899998888899333              36699999887765 444555


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |+
T Consensus       317 W~  318 (588)
T 2j04_A          317 WS  318 (588)
T ss_dssp             TT
T ss_pred             EE
Confidence            43

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.3e-29  Score=245.32  Aligned_cols=263  Identities=14%  Similarity=0.176  Sum_probs=198.1

Q ss_pred             ccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          105 SLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      .+.|.+.|++++|+  |+ +.+|++++.||.|++|++.........                                  
T Consensus       124 ~~~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~----------------------------------  167 (430)
T 2xyi_A          124 KINHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEP----------------------------------  167 (430)
T ss_dssp             EEEESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCT----------------------------------
T ss_pred             EEcCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCc----------------------------------
Confidence            33444999999995  54 678999999999999999763211000                                  


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                      .....++..+ .+|...|.+++|+|++. .|++| .||.|++|++.........+. ....+.+
T Consensus       168 ----------------~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~  229 (430)
T 2xyi_A          168 ----------------SGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTG  229 (430)
T ss_dssp             ----------------TCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEECC
T ss_pred             ----------------cccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeecC
Confidence                            0001233333 68999999999999988 99999 999999999984222111100 0012568


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEE
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS  340 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~  340 (497)
                      |...|.+++|+|++..+|++++.||.|++||++++... .....+             ..|...+++++|+|+++ ++++
T Consensus       230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~-------------~~~~~~v~~i~~~p~~~~~l~t  295 (430)
T 2xyi_A          230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTV-------------DAHTAEVNCLSFNPYSEFILAT  295 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEE-------------ECCSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEe-------------ecCCCCeEEEEeCCCCCCEEEE
Confidence            99999999999954489999999999999999976311 001222             34568899999999997 5777


Q ss_pred             Ee-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCC-----
Q 010933          341 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS-----  413 (497)
Q Consensus       341 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~~-----  413 (497)
                      |+ +|.|++||++....++..+..|...+               ++++|+|+++ +|++++.||.|+|||+....     
T Consensus       296 g~~dg~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          296 GSADKTVALWDLRNLKLKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EETTSEEEEEETTCTTSCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EeCCCeEEEEeCCCCCCCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            75 49999999987567788888887754               7999999985 69999999999999998732     


Q ss_pred             --------cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          414 --------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       414 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                              .....+.+|...++.++|+|  ++..    .+++++.|+. ++|
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~----~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDFSWNP--NEPW----IICSVSEDNIMQVW  406 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEEEECS--SSTT----EEEEEETTSEEEEE
T ss_pred             cccccCCcceEEEcCCCCCCceEEEECC--CCCC----EEEEEECCCCEEEe
Confidence                    34567788999999999999  4441    3899999999 999

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=247.29  Aligned_cols=247  Identities=14%  Similarity=0.183  Sum_probs=169.5

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|++++|  +|++.+|++|+.||.|++|++.+++.......                                      
T Consensus        29 ~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~--------------------------------------   68 (447)
T 3dw8_B           29 DIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSR--------------------------------------   68 (447)
T ss_dssp             GSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCC--------------------------------------
T ss_pred             CcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccc--------------------------------------
Confidence            88999999  68999999999999999999987652110000                                      


Q ss_pred             cceEEEeecCCccceeeeeeccCCC------------CCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeec
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDM  254 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  254 (497)
                      +           ..++...+ .+|.            ..|.+++|+|++  ..|+++ .|+.|++||+.........+..
T Consensus        69 ~-----------~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~  136 (447)
T 3dw8_B           69 G-----------EYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL  136 (447)
T ss_dssp             C-----------CEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC
T ss_pred             c-----------ceeEeccc-ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecc
Confidence            0           01122333 5776            889999999998  788888 9999999999832211000000


Q ss_pred             CC--------------------------------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010933          255 KP--------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS  302 (497)
Q Consensus       255 ~~--------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  302 (497)
                      ..                                ....+|...|.+++|+|++ .+|+++ .|+.|++||+++.....  
T Consensus       137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~--  212 (447)
T 3dw8_B          137 KEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF--  212 (447)
T ss_dssp             C--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE--
T ss_pred             cCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee--
Confidence            00                                0136799999999999999 999998 89999999998533221  


Q ss_pred             cceecccccccCCccccccccccccEEEEeeCC-CEEEEEe-cCeEEEEecCCCCce----eeeeeecccccccccccCC
Q 010933          303 ARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYN  376 (497)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~  376 (497)
                       ..+..      ....+.+|...|.+++|+|++ ++|++|+ |+.|++||+++ ++.    +..+..|.......-  + 
T Consensus       213 -~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~--~-  281 (447)
T 3dw8_B          213 -NIVDI------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSF--F-  281 (447)
T ss_dssp             -EEEEC------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCH--H-
T ss_pred             -eeeec------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCcccccc--c-
Confidence             21111      011345678899999999998 8999986 59999999986 554    677777764100000  0 


Q ss_pred             CCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933          377 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       377 ~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      ......+.+++|+|++++|++++. +.|++||+.+.......+.+|..
T Consensus       282 ~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  328 (447)
T 3dw8_B          282 SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY  328 (447)
T ss_dssp             HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred             cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence            000001379999999999999999 99999999873344466766643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.5e-29  Score=257.97  Aligned_cols=250  Identities=15%  Similarity=0.150  Sum_probs=189.7

Q ss_pred             ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933           91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus        91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                      ..+.+|.            +.|++++|  +|++++|++++.||.|++|++.++..                         
T Consensus         3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~-------------------------   43 (753)
T 3jro_A            3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETH-------------------------   43 (753)
T ss_dssp             -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEE-------------------------
T ss_pred             eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCC-------------------------
Confidence            4577888            99999999  68899999999999999999874331                         


Q ss_pred             ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCce
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~  247 (497)
                                                       +++..+ .+|...|.+++|+|+  ++.|++| .||.|++||+. .++
T Consensus        44 ---------------------------------~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~-~~~   88 (753)
T 3jro_A           44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-NGR   88 (753)
T ss_dssp             ---------------------------------EEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE-TTE
T ss_pred             ---------------------------------ccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC-CCc
Confidence                                             122233 789999999999987  9999999 99999999998 443


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      ....     ..+.+|...|.+++|+|+  + .++++++.||.|++||++++.....  ..             +.+|...
T Consensus        89 ~~~~-----~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~--~~-------------~~~~~~~  147 (753)
T 3jro_A           89 WSQI-----AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--II-------------IDAHAIG  147 (753)
T ss_dssp             EEEE-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--EE-------------EECCSSC
T ss_pred             cccc-----ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--eE-------------eecCCCc
Confidence            2111     126789999999999999  8 9999999999999999988643211  11             2345688


Q ss_pred             ccEEEEee-------------CCCEEEEEe-cCeEEEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933          326 ISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  388 (497)
Q Consensus       326 i~~~~~s~-------------~g~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (497)
                      |.+++|+|             ++.++++|+ ||.|++||++...   .+...+.+|...+               ++++|
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~~  212 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAW  212 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEE
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEEe
Confidence            99999999             588898885 5999999998632   4556677777654               79999


Q ss_pred             cCC---CCEEEEEeCCCcEEEEEcCCCCcc----eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          389 SGD---GLHFATGSYSNLLRIFSHGVGSAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       389 s~~---~~~l~s~~~dg~i~vw~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      +|+   +++|++|+.||.|++||+.++...    ......|...+.+++|+|  ++..     +++|+.||. ++|.
T Consensus       213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~-----l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLWK  282 (753)
T ss_dssp             CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT--TTCC-----EEEECSSSCEECCB
T ss_pred             ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC--CCCE-----EEEEcCCCEEEEEe
Confidence            999   899999999999999999886321    122334666666666666  4444     666666666 6663

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.3e-28  Score=235.97  Aligned_cols=280  Identities=7%  Similarity=0.048  Sum_probs=211.3

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ....+.+++|+|++.++++++.++.|++||+.+++..                  .......+.+|.            .
T Consensus       121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~------------------~~~~~~~~~~~~------------~  170 (433)
T 3bws_A          121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV------------------RLSPPEKYKKKL------------G  170 (433)
T ss_dssp             CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE------------------EECCCHHHHTTC------------C
T ss_pred             CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe------------------eecCcccccccC------------C
Confidence            3455779999998888888888999999999887530                  000111456777            8


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .|.+++|  ++++.++++++.|+.|++||+.+++...                                           
T Consensus       171 ~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~-------------------------------------------  205 (433)
T 3bws_A          171 FVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKA-------------------------------------------  205 (433)
T ss_dssp             EEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEE-------------------------------------------
T ss_pred             ceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEE-------------------------------------------
Confidence            8999999  6788999999999999999998765322                                           


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                       .+ ..|...+.+++|+|+++.++ ++ .++.|++||++ .++....       +.. ...+.+
T Consensus       206 -----------------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~-------~~~-~~~~~~  258 (433)
T 3bws_A          206 -----------------TV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRK-------TDK-IGLPRG  258 (433)
T ss_dssp             -----------------EE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEE-------CCC-CSEEEE
T ss_pred             -----------------EE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEE-------ecC-CCCceE
Confidence                             12 46778899999999999885 56 79999999998 5555544       332 345899


Q ss_pred             EEEeCCCCcEEEEEe--------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          269 AEFHPIYCNLLAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~--------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ++|+|++ ..+++++        .|+.|++||+++++..    ..+.              |...+.+++|+|+++.+++
T Consensus       259 ~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          259 LLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTIG--------------PPGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             EEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEEE--------------EEECEEEEEECSSTTEEEE
T ss_pred             EEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eecc--------------CCCCcceEEECCCCCEEEE
Confidence            9999999 8888887        5889999999987543    2221              2346789999999986654


Q ss_pred             -Ee-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---------------CCc
Q 010933          341 -RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---------------SNL  403 (497)
Q Consensus       341 -~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---------------dg~  403 (497)
                       +. ++.|++||+.+ ++.+..+..... +               .+++|+|++++|++++.               ||.
T Consensus       320 ~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~  382 (433)
T 3bws_A          320 SDMCCSKIEVYDLKE-KKVQKSIPVFDK-P---------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK  382 (433)
T ss_dssp             EETTTTEEEEEETTT-TEEEEEEECSSS-E---------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred             EecCCCEEEEEECCC-CcEEEEecCCCC-C---------------CeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence             43 59999999986 777777753322 1               58999999999988877               579


Q ss_pred             EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCE
Q 010933          404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNL  483 (497)
Q Consensus       404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~  483 (497)
                      |++||+.+++.+ ..+..                                               ...+.+++|+|+|++
T Consensus       383 v~~~d~~~~~~~-~~~~~-----------------------------------------------~~~~~~~~~s~dg~~  414 (433)
T 3bws_A          383 VYVIDTTTDTVK-EFWEA-----------------------------------------------GNQPTGLDVSPDNRY  414 (433)
T ss_dssp             EEEEETTTTEEE-EEEEC-----------------------------------------------SSSEEEEEECTTSCE
T ss_pred             EEEEECCCCcEE-EEecC-----------------------------------------------CCCCceEEEcCCCCE
Confidence            999999876332 11110                                               125678999999999


Q ss_pred             EEEEe--CCceEEEe
Q 010933          484 IACAN--GNSLFFHY  496 (497)
Q Consensus       484 la~~~--~~~~~i~~  496 (497)
                      |++++  ++.+++|.
T Consensus       415 l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          415 LVISDFLDHQIRVYR  429 (433)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEE
Confidence            88776  56699986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.1e-29  Score=239.46  Aligned_cols=265  Identities=9%  Similarity=-0.028  Sum_probs=172.2

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      |...+....+++++.+||+|+.|++|+|||..++..                  .....+..+.+|+            +
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~------------------~~~~~~~~~~gH~------------~  137 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI------------------ITQHVLGGKSGHH------------N  137 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEE------------------EEEEEECTTTSCS------------S
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc------------------ceeeeecccCCCC------------C
Confidence            334444455566778999999999999999987643                  0123456789999            9


Q ss_pred             ceeEEEEEec------CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          111 KINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       111 ~i~~l~~~~s------~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      .|++++|+|.      .++++|++++.|++|+|||+.++....                                     
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~-------------------------------------  180 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL-------------------------------------  180 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE-------------------------------------
T ss_pred             ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee-------------------------------------
Confidence            9999999751      278899999999999999997654221                                     


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeec--------
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDM--------  254 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~--------  254 (497)
                                             .+ ..|...+.+++|+|++. .|++| .|++|++||+++..........        
T Consensus       181 -----------------------~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          181 -----------------------AG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             -----------------------EE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             -----------------------ee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence                                   11 57788999999999875 78888 9999999999844322111000        


Q ss_pred             -----C----CCccCCCCCCeEEEEEe-CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCc------cc
Q 010933          255 -----K----PSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SF  318 (497)
Q Consensus       255 -----~----~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~  318 (497)
                           .    .....+|...+.++.|. |++ ..|++++.|+.+++||+..++..    ..+..|.......      ..
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEE
T ss_pred             EecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEcccccc
Confidence                 0    01234678889999987 788 99999999999999999877543    2222211111000      00


Q ss_pred             cccccccccEEEEee-CC-CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE
Q 010933          319 FTEIIASISDIKFAN-DG-QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  395 (497)
Q Consensus       319 ~~~~~~~i~~~~~s~-~g-~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  395 (497)
                      ...+ .......++| .+ .++++|+ |+.|++||+.+ ++.+..+..|...+               ++++|+|||++|
T Consensus       312 ~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspdG~~L  374 (393)
T 4gq1_A          312 ISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQDGSHL  374 (393)
T ss_dssp             ECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTTSSEE
T ss_pred             cccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCCCCEE
Confidence            1111 2233344444 33 4556665 59999999987 77777777777654               799999999999


Q ss_pred             EEEeCCCcEEEEEc
Q 010933          396 ATGSYSNLLRIFSH  409 (497)
Q Consensus       396 ~s~~~dg~i~vw~~  409 (497)
                      |+++.+| +.+|.+
T Consensus       375 A~as~~G-v~lvrL  387 (393)
T 4gq1_A          375 AIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEESSE-EEEEEE
T ss_pred             EEEeCCC-eEEEEE
Confidence            9999876 555554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.2e-27  Score=214.99  Aligned_cols=272  Identities=10%  Similarity=0.074  Sum_probs=185.1

Q ss_pred             ceEEEEEcCCCC---EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc-
Q 010933           34 IVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE-  109 (497)
Q Consensus        34 ~I~~i~~sp~g~---~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-  109 (497)
                      .+.++-|-..|-   .++++++ ..|++|+..++.                    +++.+.++..|+..   +..+... 
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~--------------------~~~~~~~~~~~~~~---v~~~~~~~   96 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW--------------------QWEKLYTWHFAEVP---VLQIVPVP   96 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSS--------------------BEEEEEEEECCSSC---EEEECCCT
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc--------------------cceeeEEEeccCce---eEEEEEcC
Confidence            345566655443   5677776 589999998863                    34556777777621   1111111 


Q ss_pred             ---------------cceeEEEEEecCC----CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933          110 ---------------EKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  170 (497)
Q Consensus       110 ---------------~~i~~l~~~~s~~----~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (497)
                                     ..|.+|++  +|+    ++.+++++.+  +++|++.++++.......                  
T Consensus        97 ~~~~~~~~~~~~~~~~~v~sla~--spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g------------------  154 (356)
T 2w18_A           97 DVYNLVCVALGNLEIREIRALFC--SSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL------------------  154 (356)
T ss_dssp             TCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--EEEEEETTTEEEEEESSS------------------
T ss_pred             cccceeeeeeccccccceEEEEE--CCCccccccEEEeCCCe--EEEEecCCCcEEEecccC------------------
Confidence                           46888888  577    8888888844  888998776644321100                  


Q ss_pred             ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCc
Q 010933          171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                       -++.+++|++...  ++.+..+ ..|...+..++|++   +++.|++| .|++|+|||+. .+
T Consensus       155 -----------------~d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-TG  213 (356)
T 2w18_A          155 -----------------SDQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-TG  213 (356)
T ss_dssp             -----------------TTCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-TC
T ss_pred             -----------------CCCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-CC
Confidence                             1678999999653  3444444 68888999999998   78999998 99999999999 56


Q ss_pred             eeeEEeecCCCccCCC---CCCeEEEEEeCCCCcEE------------EEEeCCCeEEEEEccCCcccccccceeccccc
Q 010933          247 QCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDAAE  311 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l------------~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~  311 (497)
                      +++++       +.+|   ...+.+++|+|+| .++            ++|+.|++|++||..+++.+    .++.. . 
T Consensus       214 k~l~t-------L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~-~-  279 (356)
T 2w18_A          214 QLLKK-------MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLY-C-  279 (356)
T ss_dssp             CEEEE-------EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEE-C-
T ss_pred             cEEEE-------EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEe-e-
Confidence            66665       3333   3467888999999 766            56788999999999988654    22211 0 


Q ss_pred             ccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933          312 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       312 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                            ...+|...+.  ..+.++.++++++ |++|+|||+.+ ++++.++.+|...+.              ..++|+|
T Consensus       280 ------~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vafSP  336 (356)
T 2w18_A          280 ------LPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKWSG  336 (356)
T ss_dssp             ------CCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEECS
T ss_pred             ------ccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEECC
Confidence                  0012333333  3344488899986 59999999997 999999998876431              3589999


Q ss_pred             CCCEEEEEeCCCcEEEEEc
Q 010933          391 DGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       391 ~~~~l~s~~~dg~i~vw~~  409 (497)
                      ||++|++|+.|++|+|||+
T Consensus       337 DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          337 TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEECCCcEEEecC
Confidence            9999999999999999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=232.99  Aligned_cols=259  Identities=9%  Similarity=0.028  Sum_probs=192.8

Q ss_pred             cCCcceEEEEEcCCCCEE-EEeecCCeEEEEEec--CCccccchhhhhhhcccCCCCCCccccccccc--ccCccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLK  104 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~  104 (497)
                      .|.+.|++++|+|+|++| |+|+.||.|+|||+.  +++.                       +..+.  .|.       
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------------------~~~~~~~~~~-------  149 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-----------------------LKLRKRFCFS-------  149 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------------------EEEEEEEECS-------
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-----------------------eeeeecccCC-------
Confidence            466789999999999996 899999999999998  5532                       44444  455       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           ..|.+++|  +|++.+|++++.|+.|++|++.++.....                                    
T Consensus       150 -----~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------------------  186 (450)
T 2vdu_B          150 -----KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKF------------------------------------  186 (450)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSC------------------------------------
T ss_pred             -----CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccc------------------------------------
Confidence                 78999999  68999999999999999999987653210                                    


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                          +... +.+|...|.+++|+|+   +++|++| .|+.|++||++. +.....+      +.
T Consensus       187 --------------------~~~~-~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~------~~  238 (450)
T 2vdu_B          187 --------------------TQEP-ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKW------LF  238 (450)
T ss_dssp             --------------------CCCC-SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEE------CC
T ss_pred             --------------------ccee-eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeee------ec
Confidence                                1111 2688999999999999   9999999 999999999984 4444332      56


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccC------------CccccccccccccE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG------------SKSFFTEIIASISD  328 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~  328 (497)
                      +|...|.+++|+ ++ .+|++++.|+.|++||+++++..    ..+..+.....            ...........+.+
T Consensus       239 ~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          239 GHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             CCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             CCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            899999999999 88 99999999999999999998754    33322110000            00000122457899


Q ss_pred             EEEeeCCCEEEEEe--cCeEEEEec--CCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-
Q 010933          329 IKFANDGQHLLSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-  400 (497)
Q Consensus       329 ~~~s~~g~~l~~~~--~~~i~lwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-  400 (497)
                      ++|+|++++|+++.  ++.|++|++  .. +   +.+..+..+ ..+               ++++|+|++.++++++. 
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~~v~~~~~~  375 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEFQVTLDNKE  375 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEEEEEECCTT
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcEEEEEeccc
Confidence            99999999999885  499999999  43 4   556667766 322               68999996544444443 


Q ss_pred             -----CCcEEEEEcCCC
Q 010933          401 -----SNLLRIFSHGVG  412 (497)
Q Consensus       401 -----dg~i~vw~~~~~  412 (497)
                           +..|.+|.+...
T Consensus       376 ~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          376 SSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             CCSSCCCSEEEEEEETT
T ss_pred             CCCCCCcceEEEEEEcC
Confidence                 556899987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.7e-26  Score=220.81  Aligned_cols=251  Identities=12%  Similarity=0.135  Sum_probs=192.2

Q ss_pred             cCCcceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+...+.+++|+|+|++| ++++.|+.|++||+.+++.                       +..+..+            
T Consensus        29 ~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~------------   73 (391)
T 1l0q_A           29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAG------------   73 (391)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECS------------
T ss_pred             ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------EEEEECC------------
Confidence            344668999999999987 6777899999999987643                       3334333            


Q ss_pred             ccceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                       ..+.+++|  +|++++++.+ +.|+.|++||+.+++....                                       
T Consensus        74 -~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~---------------------------------------  111 (391)
T 1l0q_A           74 -SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGT---------------------------------------  111 (391)
T ss_dssp             -SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEE---------------------------------------
T ss_pred             -CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEE---------------------------------------
Confidence             45899999  6888888655 4679999999987764321                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                           +  .+...+.+++|+|+++.+ +++ .++.|++||+. .++....       +.. ...
T Consensus       112 ---------------------~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~-------~~~-~~~  159 (391)
T 1l0q_A          112 ---------------------V--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINT-------VSV-GRS  159 (391)
T ss_dssp             ---------------------E--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEE-------EEC-CSS
T ss_pred             ---------------------E--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEE-------Eec-CCC
Confidence                                 1  223468899999999987 567 89999999998 5555554       222 345


Q ss_pred             eEEEEEeCCCCcEE-EEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933          266 ITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  342 (497)
Q Consensus       266 i~~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--  342 (497)
                      +.+++|+|++ ..| ++++.++.|++||+++++..    ..+..              ...+.+++|+|++++|++++  
T Consensus       160 ~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~  220 (391)
T 1l0q_A          160 PKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYVTNVD  220 (391)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEEEEEC
T ss_pred             cceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEE----EEEec--------------CCCccceEECCCCCEEEEEecC
Confidence            6999999999 665 67788999999999987543    22222              24688999999999888864  


Q ss_pred             --cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcceEEE
Q 010933          343 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       343 --~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~  419 (497)
                        ++.|++||+.+ ++.+..+..+...                .+++|+|++++| ++++.|+.|++||+.+++. ...+
T Consensus       221 ~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~-~~~~  282 (391)
T 1l0q_A          221 KYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATNTI-TATM  282 (391)
T ss_dssp             SSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEE
T ss_pred             cCCCcEEEEECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCCcE-EEEE
Confidence              49999999986 7788888776543                589999999987 5778899999999998744 4677


Q ss_pred             eccCcce
Q 010933          420 EAGKNEN  426 (497)
Q Consensus       420 ~~~~~~v  426 (497)
                      ..|..+.
T Consensus       283 ~~~~~~~  289 (391)
T 1l0q_A          283 AVGKNPY  289 (391)
T ss_dssp             ECSSSEE
T ss_pred             ECCcCCC
Confidence            7776653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6e-28  Score=226.45  Aligned_cols=262  Identities=10%  Similarity=0.038  Sum_probs=181.5

Q ss_pred             CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCC
Q 010933          121 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  200 (497)
Q Consensus       121 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (497)
                      +++.++++|+.||.|++||+.+++.....                                                   
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~---------------------------------------------------   74 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTI---------------------------------------------------   74 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEE---------------------------------------------------
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEE---------------------------------------------------
Confidence            56789999999999999999887643211                                                   


Q ss_pred             ccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCC-----ccCCCCCCeEEEEEeC-
Q 010933          201 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-----NMDDLTEVITSAEFHP-  273 (497)
Q Consensus       201 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~-  273 (497)
                                .  ...|.++.++|+   ++++ .|+.|++|+... .  ...++.+..     ...+|...|.+++|+| 
T Consensus        75 ----------~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  136 (343)
T 3lrv_A           75 ----------T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-Q--ITILDSKTNKVLREIEVDSANEIIYMYGHNE  136 (343)
T ss_dssp             ----------E--EECCCTTCCCCS---EEEECSTTEEEEEETTT-E--EEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred             ----------e--cCCceeeeeCCc---eEEecCCCeEEEEEccC-c--eEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence                      1  234556667777   7777 999999998762 1  111111110     0235668999999999 


Q ss_pred             -CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEec
Q 010933          274 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI  351 (497)
Q Consensus       274 -~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~  351 (497)
                       ++ .+|++++.||.|++||+++++..    .....            .|...+.+++|+|+|.+|++|+ |+.|++||+
T Consensus       137 ~~~-~~l~s~s~dg~i~~wd~~~~~~~----~~~~~------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          137 VNT-EYFIWADNRGTIGFQSYEDDSQY----IVHSA------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             --C-CEEEEEETTCCEEEEESSSSCEE----EEECC------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             CCC-CEEEEEeCCCcEEEEECCCCcEE----EEEec------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence             98 99999999999999999987643    22222            1235699999999999999985 599999999


Q ss_pred             CCCCcee-eeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc--eEEEeccCccee
Q 010933          352 RMDSTPV-ATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENR  427 (497)
Q Consensus       352 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~--~~~~~~~~~~v~  427 (497)
                      ++ ++.+ ..+.. |...+               ++++|+|++.+|++++ |+.|++||+++++..  ...+..|..++.
T Consensus       200 ~~-~~~~~~~~~~~h~~~v---------------~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  262 (343)
T 3lrv_A          200 SS-PDQASSRFPVDEEAKI---------------KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG  262 (343)
T ss_dssp             SC-TTSCCEECCCCTTSCE---------------EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred             CC-CCCCccEEeccCCCCE---------------EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccccc
Confidence            97 6655 77777 77654               7999999999999999 459999999987543  122223445555


Q ss_pred             --eeEeecCCCcccccccceeEeec-cCc-eecCCCCCcccccccCCCeEEEEEec---CCCEEEEEeCC-ceEE
Q 010933          428 --KPILQAAPRARRSSLSNLTRGLY-RQA-HENSSSGHHELSYNLSSKLLHLAWHP---TTNLIACANGN-SLFF  494 (497)
Q Consensus       428 --~~~~~~~~~~~~~~~~~l~~~~~-d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p---~~~~la~~~~~-~~~i  494 (497)
                        .++|+|  ++++     |++++. ++. ++|...........  .++..+.|+|   +...|++++.+ .+.+
T Consensus       263 ~~~~~~~~--~g~~-----l~~~s~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  328 (343)
T 3lrv_A          263 TVTYDIDD--SGKN-----MIAYSNESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCGDGGIAA  328 (343)
T ss_dssp             CEEEEECT--TSSE-----EEEEETTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred             ceEEEECC--CCCE-----EEEecCCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEecCCceEE
Confidence              488888  6666     888887 777 99933211111111  4666778887   77777776644 3444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=2.1e-26  Score=238.92  Aligned_cols=326  Identities=9%  Similarity=0.064  Sum_probs=223.9

Q ss_pred             CcceEEEEEcCCCCEEEEeec-CC-----eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc-------
Q 010933           32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP-------   98 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------   98 (497)
                      ...|.+++|||||++||+++. |+     .|++||+.+++...                     +.....+.+       
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---------------------~~~~~~~~~~~~~~~~   94 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---------------------LVDSKVVLPGTETLSD   94 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---------------------EECGGGTC--------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---------------------ccchhhcccccccccc
Confidence            457999999999999999998 88     99999998875411                     111111100       


Q ss_pred             ---ccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCch---heeccccCCCCCccccccccccccCcccc
Q 010933           99 ---EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNE  172 (497)
Q Consensus        99 ---~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (497)
                         +......+.....|.+++|  +|||++|++++. +.|.+||+.++   ....                         
T Consensus        95 ~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------------  146 (741)
T 2ecf_A           95 EEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------------  146 (741)
T ss_dssp             ------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------
T ss_pred             hhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------
Confidence               0000000000024788999  799999999987 89999999876   4222                         


Q ss_pred             CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEe
Q 010933          173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV  252 (497)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~  252 (497)
                                                           +..|...+..++|+|||+.|+++.++.|++||+. +++...+ 
T Consensus       147 -------------------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g~~~~~-  187 (741)
T 2ecf_A          147 -------------------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SGRQMQL-  187 (741)
T ss_dssp             -------------------------------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TTEEEEC-
T ss_pred             -------------------------------------cccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CCCEEEe-
Confidence                                                 1466678999999999999999866799999998 4554443 


Q ss_pred             ecCCCccCCCCC----------------CeEEEEEeCCCCcEEEEEeCCC------------------------------
Q 010933          253 DMKPSNMDDLTE----------------VITSAEFHPIYCNLLAYSSSRG------------------------------  286 (497)
Q Consensus       253 ~~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~~~dg------------------------------  286 (497)
                            ...+..                .+.+++|+|+| +.|++++.|+                              
T Consensus       188 ------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          188 ------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             ------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             ------ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence                  112222                14789999999 8888887765                              


Q ss_pred             ---eEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe------cCeEEEEecCCCCc
Q 010933          287 ---FVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWDIRMDST  356 (497)
Q Consensus       287 ---~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~~~i~lwd~~~~~~  356 (497)
                         .|++||+.+ ++..    .....           ..|...+..++| |||++|+++.      +..|++||+.+ ++
T Consensus       261 ~~~~l~~~d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~  323 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQ  323 (741)
T ss_dssp             CEEEEEEECSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CC
T ss_pred             CeeEEEEEECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-Cc
Confidence               788889887 6532    11110           123467899999 9999998752      26899999986 67


Q ss_pred             eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeee-EeecCC
Q 010933          357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAAP  435 (497)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~~~~~  435 (497)
                      ....+..+....           +..+..++|+|||+++++++.||.++||.++.... ...+..|...+..+ .|++  
T Consensus       324 ~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~--  389 (741)
T 2ecf_A          324 QRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE--  389 (741)
T ss_dssp             EEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET--
T ss_pred             eEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC--
Confidence            666665554210           00013799999999999999999888888763333 57788888888887 4888  


Q ss_pred             CcccccccceeEeeccC--c-eec--CC-CCCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933          436 RARRSSLSNLTRGLYRQ--A-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       436 ~~~~~~~~~l~~~~~d~--~-~iw--~~-~~~~~~~~~~~~~i~~l~~~p~~~~la~~~  488 (497)
                      +++.    .+++++.++  . ++|  .. +.....+.. ...+..++|+|||+.|+...
T Consensus       390 dg~~----l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~  443 (741)
T 2ecf_A          390 KAGL----AYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSW  443 (741)
T ss_dssp             TTTE----EEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEE
T ss_pred             CCCE----EEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEe
Confidence            5544    145555554  4 889  22 332333333 66788999999999988765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=3.2e-26  Score=218.87  Aligned_cols=259  Identities=10%  Similarity=0.112  Sum_probs=189.3

Q ss_pred             CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933           45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  124 (497)
Q Consensus        45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~  124 (497)
                      .++++++.|+.|++||+.+++.                       +..+..|.             .+.+++|  +|+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~~-------------~~~~~~~--s~dg~   44 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-----------------------TATIPVGS-------------NPMGAVI--SPDGT   44 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-----------------------EEEEECSS-------------SEEEEEE--CTTSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecCC-------------CcceEEE--CCCCC
Confidence            4678899999999999987643                       55566664             4899999  68888


Q ss_pred             EE-EEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933          125 MF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  203 (497)
Q Consensus       125 ~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (497)
                      ++ ++++.|+.|++||+.+++....                                                       
T Consensus        45 ~l~~~~~~d~~i~v~d~~~~~~~~~-------------------------------------------------------   69 (391)
T 1l0q_A           45 KVYVANAHSNDVSIIDTATNNVIAT-------------------------------------------------------   69 (391)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEE-------------------------------------------------------
T ss_pred             EEEEECCCCCeEEEEECCCCeEEEE-------------------------------------------------------
Confidence            77 5667999999999987764321                                                       


Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEE-E
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-A  280 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~  280 (497)
                           + .. ...+.+++|+|+++.|++ + .++.|++||+. .++....       +. +...+.+++|+|++ +.| +
T Consensus        70 -----~-~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~-------~~-~~~~~~~~~~s~dg-~~l~~  132 (391)
T 1l0q_A           70 -----V-PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGT-------VK-TGKSPLGLALSPDG-KKLYV  132 (391)
T ss_dssp             -----E-EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEE-------EE-CSSSEEEEEECTTS-SEEEE
T ss_pred             -----E-EC-CCCccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEE-------Ee-CCCCcceEEECCCC-CEEEE
Confidence                 1 22 238999999999998754 5 78999999999 5555544       22 34568999999999 655 7


Q ss_pred             EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE-EEe-cCeEEEEecCCCCcee
Q 010933          281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMDSTPV  358 (497)
Q Consensus       281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~-~~~i~lwd~~~~~~~~  358 (497)
                      +++.++.|++||+++++..    ..+..              ...+..++|+|++++++ ++. ++.|++||+++ ++.+
T Consensus       133 ~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~  193 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVI  193 (391)
T ss_dssp             EETTTTEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred             EeCCCCEEEEEECCCCcEE----EEEec--------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEE
Confidence            8888999999999987654    33333              13568999999999885 454 49999999986 7777


Q ss_pred             eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe---CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCC
Q 010933          359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  435 (497)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~  435 (497)
                      ..+..+...                .+++|+|++++|++++   .++.|++||+.+++.+ ..+..|.. +..++++|  
T Consensus       194 ~~~~~~~~~----------------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~-~~~~~~s~--  253 (391)
T 1l0q_A          194 DTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVGPD-PAGIAVTP--  253 (391)
T ss_dssp             EEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECCSS-EEEEEECT--
T ss_pred             EEEecCCCc----------------cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecCCC-ccEEEEcc--
Confidence            666544322                5899999999999888   6899999999887443 55555433 45566665  


Q ss_pred             CcccccccceeEeeccCc-eec
Q 010933          436 RARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       436 ~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      +++.    .+++++.++. ++|
T Consensus       254 dg~~----l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          254 DGKK----VYVALSFXNTVSVI  271 (391)
T ss_dssp             TSSE----EEEEETTTTEEEEE
T ss_pred             CCCE----EEEEcCCCCEEEEE
Confidence            3333    1244455555 555

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.4e-25  Score=221.89  Aligned_cols=320  Identities=8%  Similarity=0.052  Sum_probs=231.0

Q ss_pred             EEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEE
Q 010933           39 EFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  118 (497)
Q Consensus        39 ~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~  118 (497)
                      +|+|++.++++++.|++|.+||..+++.                       +.++..+.            . +..++| 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g~------------~-~~~v~~-  186 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY------------A-VHISRM-  186 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECST------------T-EEEEEE-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecCc------------c-cceEEE-
Confidence            4899999999999999999999988743                       55555332            3 788999 


Q ss_pred             ecCCCCEEEEEeCCccEEEeec--CchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEe
Q 010933          119 AAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN  196 (497)
Q Consensus       119 ~s~~~~~l~s~s~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (497)
                       +|++++|++++.|+.|++||+  .+++..                                                  
T Consensus       187 -spdg~~l~v~~~d~~V~v~D~~~~t~~~~--------------------------------------------------  215 (543)
T 1nir_A          187 -SASGRYLLVIGRDARIDMIDLWAKEPTKV--------------------------------------------------  215 (543)
T ss_dssp             -CTTSCEEEEEETTSEEEEEETTSSSCEEE--------------------------------------------------
T ss_pred             -CCCCCEEEEECCCCeEEEEECcCCCCcEE--------------------------------------------------
Confidence             789999999999999999999  554422                                                  


Q ss_pred             ecCCccceeeeeeccCCCCCeeEEEeCC----CCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccC---CC-CCCe
Q 010933          197 VGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DL-TEVI  266 (497)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~-~~~i  266 (497)
                                ..+ . +...+..++|+|    +|++++++  .+++|.+||.. ..+.++++........   .| ...+
T Consensus       216 ----------~~i-~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          216 ----------AEI-K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             ----------EEE-E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             ----------EEE-e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCce
Confidence                      222 2 334578999999    99999887  58999999998 5666666543211111   12 3378


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e-cC
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YM  344 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~~  344 (497)
                      .++.++|++..++++...++.|.+||+.+.+.+.  ...+.              +...+..+.|+|+|++++++ . ++
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~--------------~~~~~~~~~~spdg~~l~va~~~~~  346 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG--------------AAPFLHDGGWDSSHRYFMTAANNSN  346 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE--------------CCSSCCCEEECTTSCEEEEEEGGGT
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec--------------cCcCccCceECCCCCEEEEEecCCC
Confidence            9999999885677788889999999998765331  01111              12457889999999987765 3 49


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEE-EcCC-CCEEEEEe-CCCcEEEEEcCCC------Ccc
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGVG------SAG  415 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-~~~l~s~~-~dg~i~vw~~~~~------~~~  415 (497)
                      .|.+||+.+ ++++..+.....+-+.             .... ++|+ +..++++. .|++|.+||+.+.      -.+
T Consensus       347 ~v~v~D~~t-g~l~~~i~~g~~ph~g-------------~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~  412 (543)
T 1nir_A          347 KVAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  412 (543)
T ss_dssp             EEEEEETTT-TEEEEEEECSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             eEEEEECCC-CeEEEeeccCCCCCCC-------------CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence            999999997 8888887752211000             1222 4677 66677775 5899999999882      244


Q ss_pred             eEEEeccCcceeeeEeecCCCcccccccceeEee-------ccCc-eec--CCCCCcccc---------cccCCCeEEEE
Q 010933          416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-------YRQA-HEN--SSSGHHELS---------YNLSSKLLHLA  476 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-------~d~~-~iw--~~~~~~~~~---------~~~~~~i~~l~  476 (497)
                      ..++.+|...+..++++|  +++.     |.+++       .++. .+|  .+.+.....         ..+.+.+.+++
T Consensus       413 v~~l~~~g~~~~~v~~~p--dg~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  485 (543)
T 1nir_A          413 VAELQGQGGGSLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  485 (543)
T ss_dssp             EEEEECSCSCCCCEECCT--TCCE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred             EEEEEcCCCCceEEEcCC--CCCc-----EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence            588999998889999999  6766     77776       2445 888  223322122         24577899999


Q ss_pred             EecCCCEEEEEe------CCceEEEe
Q 010933          477 WHPTTNLIACAN------GNSLFFHY  496 (497)
Q Consensus       477 ~~p~~~~la~~~------~~~~~i~~  496 (497)
                      |+|+|+.|.++.      ++.|.||.
T Consensus       486 ~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          486 YNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             ECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCCCEEEEEeecCCCCCCeEEEEE
Confidence            999999988763      36688886

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.1e-26  Score=223.08  Aligned_cols=302  Identities=12%  Similarity=0.094  Sum_probs=214.1

Q ss_pred             CcceEEEEEcCCCC-EEEEee----cCC----eEEEEEe--cCCccccchhhhhhhcccCCCCCCcccccccccccCccc
Q 010933           32 VDIVSAIEFDKTGD-YLAVGD----RGG----RVILFET--VGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  100 (497)
Q Consensus        32 ~~~I~~i~~sp~g~-~lasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  100 (497)
                      ...+...+|++.|. ++++|+    .||    .|+|||+  .+++.                     .....+.+|.   
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~---------------------~~~~~~~~~~---  117 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV---------------------LAQNSYKVNK---  117 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE---------------------EEEEEEEECG---
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE---------------------EeeeEEEcCh---
Confidence            35788888988874 666886    467    8999999  77643                     1124466776   


Q ss_pred             ccccccccccceeEEEEEe------------cCCCCEEEEEeCC------ccEEEeecCchheeccccCCCCCccccccc
Q 010933          101 DYLKSLEIEEKINRVRWCA------------APNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENT  162 (497)
Q Consensus       101 ~~~~~~~~~~~i~~l~~~~------------s~~~~~l~s~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  162 (497)
                               ..+..+++.+            .+.+..++.++.+      +.|++||+.++....               
T Consensus       118 ---------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~---------------  173 (415)
T 2hqs_A          118 ---------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV---------------  173 (415)
T ss_dssp             ---------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEE---------------
T ss_pred             ---------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEE---------------
Confidence                     3344444321            1125566666543      789999986433211               


Q ss_pred             cccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC---eEE
Q 010933          163 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---RIN  238 (497)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~---~i~  238 (497)
                                                                     +.+|...+.+++|+|+|+.|+++ .++   .|+
T Consensus       174 -----------------------------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~  206 (415)
T 2hqs_A          174 -----------------------------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV  206 (415)
T ss_dssp             -----------------------------------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             -----------------------------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEE
Confidence                                                           15678899999999999999987 664   999


Q ss_pred             EEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE-EEeCCC--eEEEEEccCCcccccccceecccccccCC
Q 010933          239 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGS  315 (497)
Q Consensus       239 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  315 (497)
                      +||+. .++...        +..|...+.+++|+|+| +.|+ +++.++  .|++||+++++.     ..+..       
T Consensus       207 ~~d~~-tg~~~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~-------  264 (415)
T 2hqs_A          207 IQTLA-NGAVRQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI-----RQVTD-------  264 (415)
T ss_dssp             EEETT-TCCEEE--------EECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-----EECCC-------
T ss_pred             EEECC-CCcEEE--------eecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE-----EeCcC-------
Confidence            99998 444443        34577789999999999 7676 666655  499999987653     22222       


Q ss_pred             ccccccccccccEEEEeeCCCEEEEEec--C--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933          316 KSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       316 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                            |...+.+++|+|||++|+++++  +  .|++||+.. ++ ...+..+...+               ..++|+||
T Consensus       265 ------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~---------------~~~~~spd  321 (415)
T 2hqs_A          265 ------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQN---------------QDADVSSD  321 (415)
T ss_dssp             ------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEE---------------EEEEECTT
T ss_pred             ------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcc---------------cCeEECCC
Confidence                  3467899999999999888753  3  688888875 43 33343333322               58999999


Q ss_pred             CCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc----eec-CCCCCcc
Q 010933          392 GLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA----HEN-SSSGHHE  463 (497)
Q Consensus       392 ~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~----~iw-~~~~~~~  463 (497)
                      |++|++++.+   ..|++||+.+++.  ..+..+. .+..++|+|  +++.     +++++.++.    .+| ..++...
T Consensus       322 G~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~sp--dg~~-----l~~~s~~~~~~~l~~~d~~g~~~~  391 (415)
T 2hqs_A          322 GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAP--NGTM-----VIYSSSQGMGSVLNLVSTDGRFKA  391 (415)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECT--TSSE-----EEEEEEETTEEEEEEEETTSCCEE
T ss_pred             CCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcC--CCCE-----EEEEEcCCCccEEEEEECCCCcEE
Confidence            9999988864   5899999998744  4555554 889999998  6666     777777663    555 3455566


Q ss_pred             cccccCCCeEEEEEecCCCE
Q 010933          464 LSYNLSSKLLHLAWHPTTNL  483 (497)
Q Consensus       464 ~~~~~~~~i~~l~~~p~~~~  483 (497)
                      .+..+...|.+++|+|...+
T Consensus       392 ~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          392 RLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             ECCCSSSEEEEEEECCCCCC
T ss_pred             EeeCCCCCCcCCcccccccc
Confidence            67788999999999997643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.6e-25  Score=217.14  Aligned_cols=239  Identities=9%  Similarity=0.067  Sum_probs=188.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|.+++|+|+|+++++++.|+.|++||+.+++.                       ...+..|.            
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~-----------------------~~~~~~~~------------  211 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY-----------------------KATVDLTG------------  211 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECSS------------
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-----------------------EEEEcCCC------------
Confidence            5778999999999999999999999999999987643                       55666777            


Q ss_pred             cceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      ..+.+++|  +|+++.++++ +.|+.|++||+.+++....                                        
T Consensus       212 ~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~----------------------------------------  249 (433)
T 3bws_A          212 KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRK----------------------------------------  249 (433)
T ss_dssp             SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------------------------
T ss_pred             CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEE----------------------------------------
Confidence            78999999  5788888655 4899999999987663321                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--------CCeEEEEeCccCceeeEEeecCCCcc
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--------d~~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                          + .. ...+.+++|+|+++.++++ .        |+.|++||+. .++....        
T Consensus       250 --------------------~-~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~--------  298 (433)
T 3bws_A          250 --------------------T-DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDT--------  298 (433)
T ss_dssp             --------------------C-CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEE--------
T ss_pred             --------------------e-cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEee--------
Confidence                                1 22 3358899999999998886 3        7899999998 4555443        


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ..|...+.+++|+|++..++++++.|+.|++||+++++..    ..+..              ...+.+++|+|+|++++
T Consensus       299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPV--------------FDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSSEEEEEECTTSSEEE
T ss_pred             ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecC--------------CCCCCeEEEcCCCCEEE
Confidence            2355688999999999345567788999999999987544    22222              35688999999999888


Q ss_pred             EEec----------------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 010933          340 SRDY----------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN  402 (497)
Q Consensus       340 ~~~~----------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg  402 (497)
                      ++..                |.|++||+.+ ++.+..+..+...                .+++|+|++++|++++. |+
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEETTTT
T ss_pred             EEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEECCCC
Confidence            8643                4999999986 7888877764432                68999999999998875 99


Q ss_pred             cEEEEEcCC
Q 010933          403 LLRIFSHGV  411 (497)
Q Consensus       403 ~i~vw~~~~  411 (497)
                      .|++|+++.
T Consensus       424 ~i~v~~~~~  432 (433)
T 3bws_A          424 QIRVYRRDG  432 (433)
T ss_dssp             EEEEEEETT
T ss_pred             eEEEEEecC
Confidence            999999863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1e-24  Score=233.88  Aligned_cols=365  Identities=9%  Similarity=0.043  Sum_probs=245.8

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecC------CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRG------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  101 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  101 (497)
                      ...|...|.+++|||||++||+++.+      ..|++|++.+++                        ...+..|.    
T Consensus        48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~------------------------~~~lt~~~----   99 (1045)
T 1k32_A           48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE------------------------IKRITYFS----   99 (1045)
T ss_dssp             EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE------------------------EEECCCCC----
T ss_pred             eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC------------------------eEEcccCC----
Confidence            34688999999999999999988654      379999987764                        34566676    


Q ss_pred             cccccccccce-------eEEEEEecCCCCEEEEEeCC------ccEEEeecCchheeccccCCCCCccccccccc----
Q 010933          102 YLKSLEIEEKI-------NRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL----  164 (497)
Q Consensus       102 ~~~~~~~~~~i-------~~l~~~~s~~~~~l~s~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----  164 (497)
                              ..+       ..++|  +|||+.+++++.+      ..|.+|++.++....+......    .+.+.+    
T Consensus       100 --------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~~spG~l~  165 (1045)
T 1k32_A          100 --------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT----HILFADGRRV  165 (1045)
T ss_dssp             --------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS----EEEEETTEEE
T ss_pred             --------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc----eeeeCCCEEE
Confidence                    666       89999  6898877777654      3577778877765443322110    001000    


Q ss_pred             ------------------------------------cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeee
Q 010933          165 ------------------------------------AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV  208 (497)
Q Consensus       165 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (497)
                                                          +.+.+....+.++ .+++.+.  .++..++|.++...  ...+.
T Consensus       166 ~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~--~dg~~~l~~~~~~g--~~~~~  240 (1045)
T 1k32_A          166 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITD--IDGFGQIYSTDLDG--KDLRK  240 (1045)
T ss_dssp             EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEEC--TTSSCEEEEEETTS--CSCEE
T ss_pred             EeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEe--ccCceEEEEEeCCC--CcceE
Confidence                                                0001111111112 2222222  24677888876422  12222


Q ss_pred             eccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCC----CccCCCCCCeEEEEEe-CCCCcEEEEEe
Q 010933          209 YPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFH-PIYCNLLAYSS  283 (497)
Q Consensus       209 ~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~-~~~~~~l~~~~  283 (497)
                      + ..|. .+...+|+|+|+.|+++.++.|++|+.. ..... .+....    .....|...+.+++|+ |+| +.|++++
T Consensus       241 l-~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~  315 (1045)
T 1k32_A          241 H-TSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS  315 (1045)
T ss_dssp             C-CCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE
T ss_pred             e-cCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEee-eeccCcccccccccccccccceeeecCCCC-CEEEEEE
Confidence            2 3444 4667899999999999888999999985 43333 211000    0011245578999999 999 8888877


Q ss_pred             CCCeEEEEEccCCcccccccceecccccccCCccccccccc-cccEEEEeeCCCEEEEEec-CeEE-EEecCCCCceeee
Q 010933          284 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY-MNLK-LWDIRMDSTPVAT  360 (497)
Q Consensus       284 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~-~~i~-lwd~~~~~~~~~~  360 (497)
                       ++.|.+|++..++..     .+..             |.. .+..++|+ +|+.|+.+++ +.+. +||+.. ++. ..
T Consensus       316 -~~~i~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~-~~  373 (1045)
T 1k32_A          316 -RGQAFIQDVSGTYVL-----KVPE-------------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKA-EK  373 (1045)
T ss_dssp             -TTEEEEECTTSSBEE-----ECSC-------------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCE-EE
T ss_pred             -cCEEEEEcCCCCceE-----EccC-------------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCc-eE
Confidence             889999999876432     1221             224 68899999 9999998765 7788 889874 443 33


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccc
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  440 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  440 (497)
                      +..+...+               ..++|+|||++|++++.++.|++||+.+++. ...+.+|...+..++|+|  +++. 
T Consensus       374 l~~~~~~~---------------~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~Sp--DG~~-  434 (1045)
T 1k32_A          374 FEENLGNV---------------FAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISD--NSRF-  434 (1045)
T ss_dssp             CCCCCCSE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECT--TSCE-
T ss_pred             ecCCccce---------------eeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECC--CCCe-
Confidence            43443322               5899999999999999999999999998754 356668999999999999  7776 


Q ss_pred             cccceeEeeccC----------c-eecCC-CCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933          441 SLSNLTRGLYRQ----------A-HENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANG  489 (497)
Q Consensus       441 ~~~~l~~~~~d~----------~-~iw~~-~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~  489 (497)
                          +++++.++          . .+|.. ......+..+...+..++|+|||+.|++++.
T Consensus       435 ----la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          435 ----IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             ----EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             ----EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence                77776644          4 77832 2334556677788899999999999998885

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=2.2e-24  Score=202.84  Aligned_cols=270  Identities=10%  Similarity=0.052  Sum_probs=191.7

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      +.++.+|.            ..|++++|  +||+++|++|+.|+ +++|++..++...                      
T Consensus        12 ~~~~~~h~------------~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~----------------------   54 (355)
T 3vu4_A           12 IVPENHVS------------NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIM----------------------   54 (355)
T ss_dssp             -------C------------CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEE----------------------
T ss_pred             ccccccCC------------CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceee----------------------
Confidence            44567788            88999999  78999999888775 7899987654221                      


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCce
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~  247 (497)
                                                               ..+...+..+++.++++.++ +| .|+.|++||.. .++
T Consensus        55 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~-~~~   92 (355)
T 3vu4_A           55 -----------------------------------------SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV-KKQ   92 (355)
T ss_dssp             -----------------------------------------EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETT-TTE
T ss_pred             -----------------------------------------eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECC-CCc
Confidence                                                     11112467788888888774 46 88999999998 555


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC-cccccccceecccccccCCccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      ....       +. +...|.+++++++.   ++++ .|+.|++||+.++ +.+    ..+..                ..
T Consensus        93 ~~~~-------~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~----~~~~~----------------~~  140 (355)
T 3vu4_A           93 DVSR-------IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRI----TDDIR----------------FG  140 (355)
T ss_dssp             EEEE-------EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBS----SCCEE----------------EE
T ss_pred             EEEE-------EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceee----EEecc----------------CC
Confidence            5544       22 56789999999864   3333 4789999999987 433    22211                23


Q ss_pred             cEEEEeeCCCEEEEE---ecCeEEEEecCCCCc---------------e-eeeeeecccccccccccCCCCCccceeEEE
Q 010933          327 SDIKFANDGQHLLSR---DYMNLKLWDIRMDST---------------P-VATFKIHEHLRPKLCDLYNNDSIFDKFECS  387 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~---~~~~i~lwd~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (497)
                      ..+++++  .+++++   .+|.|++||+.. ++               + +..+.+|...+               ++++
T Consensus       141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v---------------~~~~  202 (355)
T 3vu4_A          141 GVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAILGKGVLIKAHTNPI---------------KMVR  202 (355)
T ss_dssp             EEEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCE---------------EEEE
T ss_pred             ceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccCcccEEEEccCCce---------------EEEE
Confidence            3456666  666664   349999999986 33               2 67788888765               7999


Q ss_pred             EcCCCCEEEEEeCCCc-EEEEEcCCCCcceEEEe-c-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCc-
Q 010933          388 VSGDGLHFATGSYSNL-LRIFSHGVGSAGGITVE-A-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-  462 (497)
Q Consensus       388 ~s~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~-  462 (497)
                      |+|++++|++|+.|++ |++||+.+++.+ ..+. + |..+|++++|+|  ++.+     |++++.|+. ++|...... 
T Consensus       203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~--~~~~-----l~s~s~d~~v~iw~~~~~~~  274 (355)
T 3vu4_A          203 LNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWST--DGSK-----LAVVSDKWTLHVFEIFNDQD  274 (355)
T ss_dssp             ECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECT--TSCE-----EEEEETTCEEEEEESSCCSC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECC--CCCE-----EEEEECCCEEEEEEccCCCC
Confidence            9999999999999998 999999998655 6776 5 999999999999  6766     999999999 999332110 


Q ss_pred             ---ccc---------------------cccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933          463 ---ELS---------------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  496 (497)
Q Consensus       463 ---~~~---------------------~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~  496 (497)
                         ..+                     .....+...++|+|+++.|++++.|+ +++|.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          275 NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             cccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence               000                     01122346799999999999998554 66664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=6.3e-25  Score=227.16  Aligned_cols=322  Identities=11%  Similarity=0.064  Sum_probs=211.2

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      .+.+++|+|||+++++ +.||.|++||+.+++.                       ...+.+|...         ...|.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----------------------~~~~~~~~~~---------~~~v~   64 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----------------------TVLIEGKKIE---------SLRAI   64 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----------------------EEEECTTTTT---------TTTCS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----------------------EEEecccccc---------ccccc
Confidence            4678999999998876 6899999999988753                       3334445400         01489


Q ss_pred             EEEEEecCCCCEEEEEeCC---------ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          114 RVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      +++|  +|||++|++++.+         +.+.+||+.+++...+.                                   
T Consensus        65 ~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-----------------------------------  107 (723)
T 1xfd_A           65 RYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD-----------------------------------  107 (723)
T ss_dssp             EEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC-----------------------------------
T ss_pred             eEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc-----------------------------------
Confidence            9999  7899999999765         67778888776632211                                   


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                             . ..+|...+..++|+|||+.|+++.++.|++||+. +++...+.       ..+..
T Consensus       108 -----------------------~-~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~g~~~~~~-------~~~~~  155 (723)
T 1xfd_A          108 -----------------------P-PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVV-------STGKE  155 (723)
T ss_dssp             -----------------------C-TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEE-------CCCBT
T ss_pred             -----------------------C-CccccccccccEECCCCCEEEEEECCeEEEEECC-CCceEEEe-------cCCCC
Confidence                                   0 1345556888999999999999966899999998 45444432       12222


Q ss_pred             ------------------CeEEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEE
Q 010933          265 ------------------VITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVD  292 (497)
Q Consensus       265 ------------------~i~~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d  292 (497)
                                        .+.+++|+|+| +.|++++.|+                                  .|++||
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d  234 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG  234 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence                              33789999999 8888887653                                  788888


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----c-CeEEEEecCCCCceeeeeeec-cc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EH  366 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~lwd~~~~~~~~~~~~~~-~~  366 (497)
                      +.+++..    ..+..+.       .+..+...+..++|+|||+++++..    + ..|++||+.+ ++....+..+ ..
T Consensus       235 ~~~~~~~----~~l~~~~-------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~  302 (723)
T 1xfd_A          235 LNGPTHD----LEMMPPD-------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEA  302 (723)
T ss_dssp             SSSSCCC----EECCCCC-------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSS
T ss_pred             CCCCcee----EEeeCCc-------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCC
Confidence            8776532    2222100       0112346789999999999887653    1 5899999986 6665555433 22


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEE--EeCCC------cEEEEE-cCCCCc-ceEEEeccCcceee-eEeecCC
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN------LLRIFS-HGVGSA-GGITVEAGKNENRK-PILQAAP  435 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg------~i~vw~-~~~~~~-~~~~~~~~~~~v~~-~~~~~~~  435 (497)
                      .+.         ..  ...++|+|||+.|+.  +..++      .|++|| ...+.. ....+..+...+.. ++|+|  
T Consensus       303 ~~~---------~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp--  369 (723)
T 1xfd_A          303 WLH---------RQ--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE--  369 (723)
T ss_dssp             CCC---------CC--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET--
T ss_pred             EEe---------cc--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC--
Confidence            210         00  026899999998775  45677      567777 344320 02344433334444 68888  


Q ss_pred             CcccccccceeEeecc---Cc-eecC--CCC--Ccccccc---cCCCeEEEEEecCCCEEEEEe
Q 010933          436 RARRSSLSNLTRGLYR---QA-HENS--SSG--HHELSYN---LSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       436 ~~~~~~~~~l~~~~~d---~~-~iw~--~~~--~~~~~~~---~~~~i~~l~~~p~~~~la~~~  488 (497)
                      +++.     ++..+.+   +. ++|.  ...  ....+..   +...+..++|+|||++|+...
T Consensus       370 dg~~-----l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          370 KGNK-----IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             TTTE-----EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             CCCE-----EEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            6665     6555444   44 8892  222  2222222   566788999999999988765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1e-24  Score=196.07  Aligned_cols=194  Identities=9%  Similarity=0.019  Sum_probs=141.5

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC---CCCcEEEEEeCC
Q 010933          212 AHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSR  285 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d  285 (497)
                      +|...|+++   ++++++.++   .|+.|++|++...++....       +..|...+..++|+|   ++ ..|++++.|
T Consensus       134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D  202 (356)
T 2w18_A          134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFLMPPEETILTFAEVQGMQ-EALLGTTIM  202 (356)
T ss_dssp             EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEECCCSSCEEEEEEEETST-TEEEEEETT
T ss_pred             CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeee-------eccCCCceeeEEeeccCCCC-ceEEEecCC
Confidence            344344443   456666663   4999999999655665543       557888888889988   67 899999999


Q ss_pred             CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE------------EEe-cCeEEEEecC
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL------------SRD-YMNLKLWDIR  352 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~------------~~~-~~~i~lwd~~  352 (497)
                      ++|+|||+++++.+    +.+..|.          .+...+.+++|+|+|++++            +|+ |++|++||..
T Consensus       203 ~TIkIWDl~TGk~l----~tL~g~~----------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          203 NNIVIWNLKTGQLL----KKMHIDD----------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             SEEEEEETTTCCEE----EEEECCC-------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             CcEEEEECCCCcEE----EEEcCCC----------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence            99999999999766    5554321          1124678889999998874            443 4899999998


Q ss_pred             CCCceeeeee-----ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          353 MDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       353 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      + ++.+..+.     +|...                 -+..+.++.++++|+.|++|+|||+.+++.+ .++.+|...+.
T Consensus       269 t-gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l-~tL~gH~~~vv  329 (356)
T 2w18_A          269 T-TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLGQCT-ALLPPVSDQHW  329 (356)
T ss_dssp             T-TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTCSEE-EEECCC--CCC
T ss_pred             C-CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCCcEE-EEecCCCCCeE
Confidence            6 77766552     33321                 1333334889999999999999999998554 88999988766


Q ss_pred             e-eEeecCCCcccccccceeEeeccCc-eec
Q 010933          428 K-PILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       428 ~-~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      . ++|+|  ++++     |++|+.|+. ++|
T Consensus       330 s~vafSP--DG~~-----LaSGS~D~TIklW  353 (356)
T 2w18_A          330 SFVKWSG--TDSH-----LLAGQKDGNIFVY  353 (356)
T ss_dssp             CEEEECS--SSSE-----EEEECTTSCEEEE
T ss_pred             EEEEECC--CCCE-----EEEEECCCcEEEe
Confidence            4 89999  7777     999999999 999

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.3e-23  Score=201.81  Aligned_cols=243  Identities=14%  Similarity=0.117  Sum_probs=186.4

Q ss_pred             CCEEEEeecC------CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933           44 GDYLAVGDRG------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  117 (497)
Q Consensus        44 g~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~  117 (497)
                      +..++.++.+      +.|++||+++..                        ...+.+|.            ..|.+++|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------------~~~l~~~~------------~~v~~~~~  186 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN------------------------QFVVHRSP------------QPLMSPAW  186 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS------------------------CEEEEEES------------SCEEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC------------------------CEEEeCCC------------CcceeeEE
Confidence            6677777765      799999987542                        45566787            88999999


Q ss_pred             EecCCCCEEEEEeCCc---cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933          118 CAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  194 (497)
Q Consensus       118 ~~s~~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (497)
                        +|++++|++++.|+   .|++||+.+++...+                                              
T Consensus       187 --Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l----------------------------------------------  218 (415)
T 2hqs_A          187 --SPDGSKLAYVTFESGRSALVIQTLANGAVRQV----------------------------------------------  218 (415)
T ss_dssp             --CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----------------------------------------------
T ss_pred             --cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe----------------------------------------------
Confidence              78999999999875   999999987763321                                              


Q ss_pred             EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCC--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                      ..|...+.+++|+|+|+.|+ ++ .++  .|++||+. .++...        +..|...+.+++
T Consensus       219 ----------------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~~~--------l~~~~~~~~~~~  273 (415)
T 2hqs_A          219 ----------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDGRSNNTEPT  273 (415)
T ss_dssp             ----------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------CCCCSSCEEEEE
T ss_pred             ----------------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCEEe--------CcCCCCcccceE
Confidence                            45667899999999999888 55 554  59999998 444432        567888999999


Q ss_pred             EeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c---
Q 010933          271 FHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---  343 (497)
Q Consensus       271 ~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---  343 (497)
                      |+|+| +.|++++. ++  .|.+||+.+++..     .+..             +...+.+++|+|+|++|++++ +   
T Consensus       274 ~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdG~~l~~~~~~~g~  334 (415)
T 2hqs_A          274 WFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-----RITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQ  334 (415)
T ss_dssp             ECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-----ECCC-------------SSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             ECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-----EEec-------------CCCcccCeEECCCCCEEEEEECcCCc
Confidence            99999 88888776 44  6888898876532     1111             224678999999999998864 2   


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCcceEEEe
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~  420 (497)
                      ..|++||+.+ ++. ..+..+. .+               .+++|+|||++|++++.++   .|++||+..+  ....+.
T Consensus       335 ~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~  394 (415)
T 2hqs_A          335 QHIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLP  394 (415)
T ss_dssp             EEEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECC
T ss_pred             eEEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEee
Confidence            5899999985 554 3444443 22               5899999999999988877   7999998743  347889


Q ss_pred             ccCcceeeeEeecC
Q 010933          421 AGKNENRKPILQAA  434 (497)
Q Consensus       421 ~~~~~v~~~~~~~~  434 (497)
                      .|.+.|+.++|+|.
T Consensus       395 ~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          395 ATDGQVKFPAWSPY  408 (415)
T ss_dssp             CSSSEEEEEEECCC
T ss_pred             CCCCCCcCCccccc
Confidence            99999999999995

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=2.1e-23  Score=215.11  Aligned_cols=334  Identities=10%  Similarity=0.056  Sum_probs=209.2

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCcc--ccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN--HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .+..+.|+  |+.+++++.|+ | +||+.+++.  ..+.....              ....+...+    ..+. .....
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~--------------~~~~l~~~~----~~~~-~~~~~   83 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAAD--------------LNALMPEGC----KFQT-TDAFP   83 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHH--------------HHTTC----------------CC
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhH--------------hhhhccchh----cccc-ccccC
Confidence            34557777  66777777777 8 999988754  21110000              000000000    0000 00045


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |.+++|  +|| +.++.+. ++.|++||+.+++...+                                           
T Consensus        84 v~~~~~--spd-~~~~~~~-~~~i~~~d~~~~~~~~l-------------------------------------------  116 (706)
T 2z3z_A           84 SFRTLD--AGR-GLVVLFT-QGGLVGFDMLARKVTYL-------------------------------------------  116 (706)
T ss_dssp             CEEEEE--TTT-TEEEEEE-TTEEEEEETTTTEEEEE-------------------------------------------
T ss_pred             ceeEEE--CCC-CeEEEEE-CCEEEEEECCCCceEEc-------------------------------------------
Confidence            899999  678 6666554 59999999987764321                                           


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccC----ceeeEEeecCCCccCCCCC---
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTE---  264 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~---  264 (497)
                                         ..+...+.+++|+|+|+.|+++.++.|++||+...    ++...+       ...+..   
T Consensus       117 -------------------~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~-------~~~~~~~~~  170 (706)
T 2z3z_A          117 -------------------FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAV-------TIDGTETLV  170 (706)
T ss_dssp             -------------------ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEES-------CSCCBTTEE
T ss_pred             -------------------cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEe-------ccCCCCCeE
Confidence                               23455677899999999999998899999999841    444332       111222   


Q ss_pred             -----------CeEEEEEeCCCCcEEEEEe---------------------------------CCCeEEEEEccCCcccc
Q 010933          265 -----------VITSAEFHPIYCNLLAYSS---------------------------------SRGFVRLVDMRQSALCD  300 (497)
Q Consensus       265 -----------~i~~~~~~~~~~~~l~~~~---------------------------------~dg~i~v~d~~~~~~~~  300 (497)
                                 .+.+++|+|+| +.|++++                                 .+..|++||+.+++.. 
T Consensus       171 ~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-  248 (706)
T 2z3z_A          171 YGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-  248 (706)
T ss_dssp             ESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-
T ss_pred             cccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-
Confidence                       25889999999 8899887                                 4468999999887532 


Q ss_pred             cccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC-----eEEEEecCCCCceeeeeeeccccccccccc
Q 010933          301 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIHEHLRPKLCDL  374 (497)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  374 (497)
                         .....           ..|...+..++|+|||++|+++. ++     .|++||+.+ ++....+.......      
T Consensus       249 ---~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~------  307 (706)
T 2z3z_A          249 ---YLQTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH------  307 (706)
T ss_dssp             ---ECCCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS------
T ss_pred             ---eeccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC------
Confidence               11111           12345789999999999888853 33     899999986 53333332211110      


Q ss_pred             CCCCCccceeEEEEcC--CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee-eEeecCCCcccccccceeEeecc
Q 010933          375 YNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLTRGLYR  451 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~~~~~d  451 (497)
                          .+..+..++|+|  ||++|++++.|+.++||.++........+..+...+.. +++++  ++..    .++++..+
T Consensus       308 ----~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp--dg~~----l~~~~~~~  377 (706)
T 2z3z_A          308 ----YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP--KGTR----LYFESTEA  377 (706)
T ss_dssp             ----CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT--TSSE----EEEEESSS
T ss_pred             ----eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC--CCCE----EEEEecCC
Confidence                000013689999  99999999999999999887333444677778777876 78888  5544    13444444


Q ss_pred             C--c-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-----ceEEEe
Q 010933          452 Q--A-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-----SLFFHY  496 (497)
Q Consensus       452 ~--~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-----~~~i~~  496 (497)
                      +  . .+|  ...........+...+.+++|+|||++|+.++.+     .+++|+
T Consensus       378 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          378 SPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             CTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             CCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            4  2 666  2222223334467789999999999998877532     388886

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=5.8e-23  Score=220.31  Aligned_cols=363  Identities=10%  Similarity=0.052  Sum_probs=244.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...+.++.|+++ .++++++.|+.+.||.+....                      .....+..|.            
T Consensus       201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g----------------------~~~~~l~~~~------------  245 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG----------------------KDLRKHTSFT------------  245 (1045)
T ss_dssp             CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS----------------------CSCEECCCCC------------
T ss_pred             CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC----------------------CcceEecCCC------------
Confidence            57889999999998 667778888999999876421                      1123334443            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCC-CCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  188 (497)
                       .+..++|  +|+|+.++++. ++.|.+|++....+..+.......   ......+.+.+....++ ++...++.+.   
T Consensus       246 -~~~~~~~--SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~---~~~~~~~~~~v~~~~~S~pdG~~la~~~---  315 (1045)
T 1k32_A          246 -DYYPRHL--NTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLES---PEDRIISIPSKFAEDFSPLDGDLIAFVS---  315 (1045)
T ss_dssp             -SSCEEEE--EESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCB---CCSEEEECGGGGEEEEEECGGGCEEEEE---
T ss_pred             -CcceeeE--cCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccc---cccccccccccceeeecCCCCCEEEEEE---
Confidence             2566788  57888888874 889999998544333111100000   00001122234444555 6666665554   


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCC-CeeEEEeCCCCCEEEEE-cCCeEE-EEeCccCceeeEEeecCCCccCCCCCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~-~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                      ++.+.+|+....   +... + ..|.. .+..++|+ +|+.|+++ .+..+. +|++. .+....        +.+|...
T Consensus       316 ~~~i~~~~~~~~---~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~--------l~~~~~~  380 (1045)
T 1k32_A          316 RGQAFIQDVSGT---YVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK--------FEENLGN  380 (1045)
T ss_dssp             TTEEEEECTTSS---BEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE--------CCCCCCS
T ss_pred             cCEEEEEcCCCC---ceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE--------ecCCccc
Confidence            567888887643   2222 2 56666 89999999 99999998 878888 89987 444333        3367788


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--  343 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--  343 (497)
                      +..++|+|+| +.|++++.++.|++||+.+++..    .....             |...+..++|+|||++|+++..  
T Consensus       381 ~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~~~~~~  442 (1045)
T 1k32_A          381 VFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAYGFPLK  442 (1045)
T ss_dssp             EEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             eeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEEEecCc
Confidence            9999999999 99999999999999999987643    33322             3467899999999999988642  


Q ss_pred             ---------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC-
Q 010933          344 ---------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-  413 (497)
Q Consensus       344 ---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~-  413 (497)
                               +.|++||+.. ++ ...+..|...+               ..++|+|||++|+.++.++...+|+..... 
T Consensus       443 ~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          443 HGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             SSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             cccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence                     3899999985 55 55555554432               579999999999999987777666543211 


Q ss_pred             -----------------------------------------cceEEEeccCcceeeeEeecCCCcccccccceeE-----
Q 010933          414 -----------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTR-----  447 (497)
Q Consensus       414 -----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~-----  447 (497)
                                                               .....+..|.+.+..+.+++  ++..     +++     
T Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~--dg~~-----~~~~~~~g  578 (1045)
T 1k32_A          506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE--SSIL-----IYSVPVHG  578 (1045)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS--SEEE-----EEECCCCC
T ss_pred             ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC--CCeE-----EEEecccC
Confidence                                                     11233444666777888877  5554     443     


Q ss_pred             ------eeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          448 ------GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       448 ------~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                            .+.+.. .+|  .........  ....+..++|+|||+.|++++.+.+.+|.
T Consensus       579 ~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~v~~~~~S~DG~~l~~~~~~~i~~~d  634 (1045)
T 1k32_A          579 EFAAYYQGAPEKGVLLKYDVKTRKVTE--VKNNLTDLRLSADRKTVMVRKDDGKIYTF  634 (1045)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCCEEE--EEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cccccccccCCCceEEEEECCCCcEEE--eecCcceEEECCCCCEEEEEcCCcEEEEe
Confidence                  122223 555  222111111  12678899999999999999999999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=7.2e-23  Score=187.25  Aligned_cols=226  Identities=12%  Similarity=0.142  Sum_probs=158.7

Q ss_pred             EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEE
Q 010933           49 VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL  128 (497)
Q Consensus        49 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s  128 (497)
                      .++.|+.|++||+.+++.                        ..+..|.            ..|.+++|  +|++++|++
T Consensus        17 ~~~~~~~i~~~d~~~~~~------------------------~~~~~~~------------~~v~~~~~--spdg~~l~~   58 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM------------------------RVVWQTP------------ELFEAPNW--SPDGKYLLL   58 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE------------------------EEEEEES------------SCCEEEEE--CTTSSEEEE
T ss_pred             CCCcceeEEEEeCCCCce------------------------eeeccCC------------cceEeeEE--CCCCCEEEE
Confidence            356789999999987643                        2344566            78999999  789999998


Q ss_pred             EeCCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeee
Q 010933          129 STNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK  207 (497)
Q Consensus       129 ~s~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (497)
                      ++ ++.|.+||+.+ ++...+.                                                          
T Consensus        59 ~~-~~~i~~~d~~~~~~~~~~~----------------------------------------------------------   79 (297)
T 2ojh_A           59 NS-EGLLYRLSLAGDPSPEKVD----------------------------------------------------------   79 (297)
T ss_dssp             EE-TTEEEEEESSSCCSCEECC----------------------------------------------------------
T ss_pred             Ec-CCeEEEEeCCCCCCceEec----------------------------------------------------------
Confidence            87 78999999987 6533211                                                          


Q ss_pred             eeccCC-CCCeeEEEeCCCCCEEEEE-cC--CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE-EE
Q 010933          208 VYPHAH-DFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YS  282 (497)
Q Consensus       208 ~~~~~h-~~~v~~~~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~  282 (497)
                         ..+ ...+.+++|+|+++.|+++ .+  +...+|.++........       +..+ ..+..++|+|++ +.|+ ++
T Consensus        80 ---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l~~~~  147 (297)
T 2ojh_A           80 ---TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSFTYCG  147 (297)
T ss_dssp             ---CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEEEEEE
T ss_pred             ---cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEEEEEE
Confidence               233 3567889999999999887 33  45555554422222222       2223 348899999999 6665 77


Q ss_pred             eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceeee
Q 010933          283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT  360 (497)
Q Consensus       283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~~  360 (497)
                      +.++.+++|+++......   ..+.             .+...+.+++|+|+|++|+.+.  ++.+++|++...+..+..
T Consensus       148 ~~~~~~~l~~~~~~~~~~---~~~~-------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~  211 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVE---TRLT-------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER  211 (297)
T ss_dssp             EETTEEEEEEEETTTCCE---EECC-------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred             CCCCceEEEEEECCCCcc---eEcc-------------cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence            889999999965321110   1111             2345789999999999888753  588999988744556666


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCCc
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGSA  414 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----------g~i~vw~~~~~~~  414 (497)
                      +..+...+               ..++|+|++++|++++.+           +.|++||+.+++.
T Consensus       212 ~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          212 ITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             EecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            66555432               589999999999988876           5699999987643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=2.1e-21  Score=180.88  Aligned_cols=238  Identities=11%  Similarity=0.084  Sum_probs=162.2

Q ss_pred             EEEcCCCCE-EEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        38 i~~sp~g~~-lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      ..|.+++++ +++++.++.|.+||..+++.                       ...+..+.            ..+ .++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------~~~-~~~   46 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI-----------------------LNQITLGY------------DFV-DTA   46 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECCC------------CEE-EEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccce-----------------------eeeEEccC------------Ccc-eEE
Confidence            346665555 67778899999999988753                       33333344            456 899


Q ss_pred             EEecCCCCEEEEEeC-CccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933          117 WCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  194 (497)
Q Consensus       117 ~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (497)
                      |  +|+++++++++. ++.|.+||+.+++. ...                                              
T Consensus        47 ~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------------------   78 (331)
T 3u4y_A           47 I--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVA----------------------------------------------   78 (331)
T ss_dssp             E--CSSSCEEEEEESTTCEEEEEECSSSSCEEEE----------------------------------------------
T ss_pred             E--cCCCCEEEEEeCCCCeEEEEECCCCceeEEe----------------------------------------------
Confidence            9  788887777664 89999999987663 111                                              


Q ss_pred             EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-C--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                    + ..+..+..+++|+|+|+.++++ .+ +  .|.+||+. .++....+       . ......+++
T Consensus        79 --------------~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~~~~~  134 (331)
T 3u4y_A           79 --------------I-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTI-------P-IPYDAVGIA  134 (331)
T ss_dssp             --------------E-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEE-------E-CCTTEEEEE
T ss_pred             --------------c-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEE-------E-CCCCccceE
Confidence                          1 2334445458999999999966 44 3  99999998 55555442       2 234568999


Q ss_pred             EeCCCCcEEEEEeCCCe-EEEEEccCCcccccc-cceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeE
Q 010933          271 FHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL  346 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i  346 (497)
                      |+|+|..++++...++. |.+|++......... ...+.              .......++|+|+|++++++.  ++.|
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--------------GGTRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--------------SSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--------------CCCCccceEECCCCCEEEEEeCCCCeE
Confidence            99999334555566688 999999854322110 01111              123478999999999776653  4899


Q ss_pred             EEEecCCCCce---eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 010933          347 KLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSA  414 (497)
Q Consensus       347 ~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~  414 (497)
                      ++||+.+ ++.   +..+..+...                ..++|+|||++|+.++ .++.|.+||..+++.
T Consensus       201 ~v~d~~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          201 GILETQN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEECSS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             EEEECCC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            9999986 676   6666544332                4799999999877665 578899999988743

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=9.6e-22  Score=194.48  Aligned_cols=278  Identities=12%  Similarity=0.093  Sum_probs=195.5

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEe--cCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .+.+++|+|||++|++++.|+.|++||+  .+++                       .+.++..+             ..
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----------------------~~~~i~~g-------------~~  223 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----------------------KVAEIKIG-------------IE  223 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----------------------EEEEEECC-------------SE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----------------------EEEEEecC-------------CC
Confidence            3889999999999999999999999999  5542                       24445432             45


Q ss_pred             eeEEEEEecC----CCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          112 INRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       112 i~~l~~~~s~----~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      +..++|  +|    +++++++++ .+++|.+||..+++..........                                
T Consensus       224 p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~--------------------------------  269 (543)
T 1nir_A          224 ARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--------------------------------  269 (543)
T ss_dssp             EEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--------------------------------
T ss_pred             cceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc--------------------------------
Confidence            789999  68    999999987 589999999887765443211000                                


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCC-CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHD-FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                        ..... ..|. ..+..+.++|++..++. . .++.|.+||..... ...+.      ...+.
T Consensus       270 ------------------~~~~~-~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~~~------~i~~~  323 (543)
T 1nir_A          270 ------------------TVDTQ-TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLTVT------SIGAA  323 (543)
T ss_dssp             ------------------CSSSC-CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCEEE------EEECC
T ss_pred             ------------------ccCcc-ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cceeE------EeccC
Confidence                              00000 1132 37889999998776655 5 89999999998433 22211      11245


Q ss_pred             CCeEEEEEeCCCCcEEEEE-eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEE
Q 010933          264 EVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR  341 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~  341 (497)
                      ..+..+.|+|+| ++|+++ ..++.|.+||+.++++.    ..+....         ..|.+....+ ++|+ |.+++++
T Consensus       324 ~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~g~---------~ph~g~g~~~-~~p~~g~~~~s~  388 (543)
T 1nir_A          324 PFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDVGK---------TPHPGRGANF-VHPKYGPVWSTS  388 (543)
T ss_dssp             SSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSS---------SBCCTTCEEE-EETTTEEEEEEE
T ss_pred             cCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----EeeccCC---------CCCCCCCccc-CCCCCccEEEec
Confidence            667889999999 765554 56899999999998755    3333200         1122222222 4677 6666666


Q ss_pred             e--cCeEEEEecCCC------CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-------CCCcEEE
Q 010933          342 D--YMNLKLWDIRMD------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRI  406 (497)
Q Consensus       342 ~--~~~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~i~v  406 (497)
                      .  +++|.+||+.+.      .++++++.+|....               ..++++|++++|++++       .+++|.|
T Consensus       389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v  453 (543)
T 1nir_A          389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYVDTTFNPDARISQSVAV  453 (543)
T ss_dssp             BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred             cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence            3  599999999752      67889998886543               4799999999999987       2779999


Q ss_pred             EEcCCCCcceEEE--------eccCcceeeeEeecCCCccc
Q 010933          407 FSHGVGSAGGITV--------EAGKNENRKPILQAAPRARR  439 (497)
Q Consensus       407 w~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~  439 (497)
                      ||+.+++.....+        ..+...+..+.|++  +++.
T Consensus       454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~g~~  492 (543)
T 1nir_A          454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK--RGDE  492 (543)
T ss_dssp             EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS--SSSE
T ss_pred             EECCCCCCCeEEeechhhcccCCCCCceEeccCCC--CCCE
Confidence            9999987653444        45678899999999  5555

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=2.8e-21  Score=181.69  Aligned_cols=254  Identities=9%  Similarity=0.031  Sum_probs=179.4

Q ss_pred             CCcceEEEEEcCCCCEEEEeec-------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  103 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  103 (497)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++.                       ...+...       
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~-------   88 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-----------------------TQAIHND-------   88 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-----------------------EEEEEES-------
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-----------------------EEEEecC-------
Confidence            4567889999999999988773       56899999987643                       2333222       


Q ss_pred             cccccccceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                            ..+..++|  ++++++++.+ ..++.|.+||..+++...........                           
T Consensus        89 ------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------------------  133 (353)
T 3vgz_A           89 ------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK---------------------------  133 (353)
T ss_dssp             ------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC---------------------------
T ss_pred             ------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc---------------------------
Confidence                  34677899  6788866555 56799999999887754322111000                           


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCcc
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                           ..    .......+.+++|+|+|+.++++   .++.|.+||.. .++....       +
T Consensus       134 ---------------------~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~-------~  180 (353)
T 3vgz_A          134 ---------------------RT----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTA-------I  180 (353)
T ss_dssp             ---------------------CC----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEE-------E
T ss_pred             ---------------------cc----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEE-------e
Confidence                                 00    00111236789999999987765   37899999998 5555554       3


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ..+...+..++|+|++ +.+++++.++.|.+||+.+++..    ..+....         .++...+..++|+|+|++++
T Consensus       181 ~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~---------~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          181 QNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD---------DGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             CCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC---------SSSCCCEEEEEEETTTTEEE
T ss_pred             cCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC---------CCCCcccceEEECCCCCEEE
Confidence            3344557889999999 88999999999999999987654    2222100         11234577899999999877


Q ss_pred             EEe-c-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 010933          340 SRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSA  414 (497)
Q Consensus       340 ~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~  414 (497)
                      ++. + +.|.+||+.+ ++.+..+.....                 ..++|+|++++|++++ .++.|.+||..+++.
T Consensus       247 ~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            764 3 8999999986 777777765443                 3699999999766555 689999999988743

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=3.6e-21  Score=180.12  Aligned_cols=279  Identities=14%  Similarity=0.128  Sum_probs=178.6

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecC-CeEEEEEec--CCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      +.|...+.+++|+|+|++|++++.+ +.|.+|++.  +++.                     +.+..+..+         
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~---------   83 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------TFAAESALP---------   83 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---------------------EEEEEEECS---------
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---------------------eeccccccC---------
Confidence            4567789999999999999988876 999999997  4432                     222233222         


Q ss_pred             cccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                          ..+..++|  +|+++++++++ .++.|.+|++..+....                                     
T Consensus        84 ----~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~-------------------------------------  120 (343)
T 1ri6_A           84 ----GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVG-------------------------------------  120 (343)
T ss_dssp             ----SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEE-------------------------------------
T ss_pred             ----CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccc-------------------------------------
Confidence                45788999  68999887776 48899999985322111                                     


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEe--ecCCCccC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMD  260 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~  260 (497)
                                          .+..+ . ....+.+++|+|+++.++++  .++.|.+||+...++.....  ..    ..
T Consensus       121 --------------------~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~  174 (343)
T 1ri6_A          121 --------------------VVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----TT  174 (343)
T ss_dssp             --------------------EEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----EC
T ss_pred             --------------------ccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc----cc
Confidence                                11111 2 23357889999999977665  79999999998424332211  00    11


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEE-eCCCeEEEEEccC--CcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  337 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  337 (497)
                      .....+..++|+|++ ++++++ ..++.|++||+..  ++..  ...........       ......+..++|+|+|++
T Consensus       175 ~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~-------~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          175 VEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPEN-------FSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             STTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTT-------CCSCCCEEEEEECTTSSE
T ss_pred             CCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcc-------ccccCCccceEECCCCCE
Confidence            233577899999999 766554 4789999999954  3221  00111110000       001234668999999998


Q ss_pred             EEEEe--cCeEEEEecCCC---CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcC-
Q 010933          338 LLSRD--YMNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG-  410 (497)
Q Consensus       338 l~~~~--~~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~-  410 (497)
                      |+++.  ++.|++||+...   .+.+..+..+...                ..++|+|++++|++++ .++.|.+|+++ 
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            87553  499999999731   2233334333321                5799999999988888 58999999654 


Q ss_pred             -CCCcc-eEEEeccCcceeeeEeec
Q 010933          411 -VGSAG-GITVEAGKNENRKPILQA  433 (497)
Q Consensus       411 -~~~~~-~~~~~~~~~~v~~~~~~~  433 (497)
                       ++... ...+... .....+++.+
T Consensus       309 ~~g~~~~~~~~~~g-~~p~~i~~~~  332 (343)
T 1ri6_A          309 EQGLLHEKGRYAVG-QGPMWVVVNA  332 (343)
T ss_dssp             TTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred             CCceeeEccccccC-CCCeeEEEEc
Confidence             44221 2223332 3344666655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=2.5e-21  Score=200.78  Aligned_cols=309  Identities=9%  Similarity=0.005  Sum_probs=196.9

Q ss_pred             cceeEEEEEecCCCCEEEEEeC-Cc-----cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      ..|.+++|  +|||++|++++. |+     .|++||+.+++...+.......         +++.           .+. 
T Consensus        37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~---------~~~~-----------~~~-   93 (741)
T 2ecf_A           37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL---------PGTE-----------TLS-   93 (741)
T ss_dssp             CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred             CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc---------cccc-----------ccc-
Confidence            56899999  799999999998 88     9999999988755433211100         0000           000 


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCc--eeeEEeecCCCccCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD--QCFNIVDMKPSNMDD  261 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~  261 (497)
                                   .+.. ..+....  ......+.+++|+|||+.|+++.++.|++||+....  ....        +..
T Consensus        94 -------------~~~~-~~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~--------l~~  149 (741)
T 2ecf_A           94 -------------DEEK-ARRERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ--------LTH  149 (741)
T ss_dssp             -----------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB--------CCC
T ss_pred             -------------chhh-hhhhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE--------ccc
Confidence                         0000 0000000  001134778999999999999955999999998331  3322        556


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccccc--CC-ccccccccccccEEEEeeCCCEE
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--GS-KSFFTEIIASISDIKFANDGQHL  338 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~~s~~g~~l  338 (497)
                      +...+..++|+|+| +.|++++ ++.|++||+.+++..    .....+....  .. .-........+..++|||||++|
T Consensus       150 ~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l  223 (741)
T 2ecf_A          150 GEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI  223 (741)
T ss_dssp             SSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred             CCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence            77889999999999 8888887 468999999887543    2111100000  00 00000001225789999999999


Q ss_pred             EEEe-cC---------------------------------eEEEEecCCCCceeeeee--ecccccccccccCCCCCccc
Q 010933          339 LSRD-YM---------------------------------NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFD  382 (497)
Q Consensus       339 ~~~~-~~---------------------------------~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  382 (497)
                      ++++ ++                                 .|++||+.+.++......  .+...               
T Consensus       224 ~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---------------  288 (741)
T 2ecf_A          224 AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY---------------  288 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE---------------
T ss_pred             EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE---------------
Confidence            8873 33                                 788889863033222221  12222               


Q ss_pred             eeEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCCcceEEEeccCc----ceeeeEeecCCCcccccccceeEeeccCc
Q 010933          383 KFECSVSGDGLHFATGSY-----SNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAAPRARRSSLSNLTRGLYRQA  453 (497)
Q Consensus       383 ~~~~~~s~~~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~l~~~~~d~~  453 (497)
                      +..++| |||++|++++.     +..|++||+.+++.. ..+..+..    .+..++|+|  ++++     +++++.++.
T Consensus       289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~  359 (741)
T 2ecf_A          289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD--DGSI-----LWSSERTGF  359 (741)
T ss_dssp             EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT--TSCE-----EEEECTTSS
T ss_pred             EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC--CCeE-----EEEecCCCc
Confidence            268999 99999997664     578999999988543 45555443    456889998  5656     888888887


Q ss_pred             -eec--C-CCCCcccccccCCCeEEE-EEecCCCEEEEEe-CC---ceEEEe
Q 010933          454 -HEN--S-SSGHHELSYNLSSKLLHL-AWHPTTNLIACAN-GN---SLFFHY  496 (497)
Q Consensus       454 -~iw--~-~~~~~~~~~~~~~~i~~l-~~~p~~~~la~~~-~~---~~~i~~  496 (497)
                       .+|  . .+. ...+..+...|..+ +|+|+++.|+..+ .+   .+.+|.
T Consensus       360 ~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          360 QHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             cEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence             888  2 333 55566777888887 5999999876554 44   567774

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.3e-21  Score=202.19  Aligned_cols=318  Identities=11%  Similarity=0.060  Sum_probs=202.4

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      .++|+|+|++++++ .|+.|++||+.+++.                       ...+.+|...         ...|.+++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~-----------------------~~~~~~~~~~---------~~~~~~~~   66 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS-----------------------YTILSNRTMK---------SVNASNYG   66 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE-----------------------EEEECHHHHH---------TTTCSEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE-----------------------EEEEcccccc---------ccceeeEE
Confidence            78999999766655 689999999988753                       2223333200         01388999


Q ss_pred             EEecCCCCEEEEEeC---------CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          117 WCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       117 ~~~s~~~~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      |  +|||++|++++.         ++.|++||+.+++....                                       
T Consensus        67 ~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------------------------  105 (719)
T 1z68_A           67 L--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------------------------  105 (719)
T ss_dssp             E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------------------------
T ss_pred             E--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------------------------
Confidence            9  799999999876         78999999988774110                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCe-
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-  266 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-  266 (497)
                                             ......+..++|+|||+.|+++.++.|++|++. +++...+.      ..++...+ 
T Consensus       106 -----------------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~------~~~~~~~v~  155 (719)
T 1z68_A          106 -----------------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQIT------FNGRENKIF  155 (719)
T ss_dssp             -----------------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECC------CCCBTTTEE
T ss_pred             -----------------------eecCcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEe------cCCCcCCeE
Confidence                                   000134778999999999999978899999998 44443321      22222222 


Q ss_pred             ----------------EEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEEccCC
Q 010933          267 ----------------TSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQS  296 (497)
Q Consensus       267 ----------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~  296 (497)
                                      .+++|+||| +.|++++.|.                                  .|++||+.++
T Consensus       156 ~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~  234 (719)
T 1z68_A          156 NGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP  234 (719)
T ss_dssp             ESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred             cccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence                            489999999 8999887652                                  7888998876


Q ss_pred             cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-----CeEEEEe----cCCCCceeeee----ee
Q 010933          297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF----KI  363 (497)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~lwd----~~~~~~~~~~~----~~  363 (497)
                      +...    .+..     .....+.+|...+..++|+||++++++..+     ..|.+||    +.+ ++....+    ..
T Consensus       235 ~~~~----~~~~-----~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~  304 (719)
T 1z68_A          235 AYVG----PQEV-----PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEES  304 (719)
T ss_dssp             HHHC----CEEC-----CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEEC
T ss_pred             Cccc----eeEc-----cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEeccccc
Confidence            5310    0000     000112345677899999999887777432     3588899    664 5554444    34


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEE--EeCCC--cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  439 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg--~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  439 (497)
                      +...+..        ..  ...+.|+|||+.|+.  ...+|  .|.+|++.+++  ...+..+...+..+.+. . ...+
T Consensus       305 ~~~~~~~--------~~--~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d-~~~i  370 (719)
T 1z68_A          305 RTGWAGG--------FF--VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-T-QDSL  370 (719)
T ss_dssp             SSSCSSS--------SS--CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-C-SSEE
T ss_pred             CCceEcc--------cc--CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-e-CCEE
Confidence            4443210        00  015899999996654  44555  56667776654  35666666667777766 2 3333


Q ss_pred             ccccceeEeec----cCc-eecC--C--CCC-cccc----cccCCCeEEEEEecCCCEEEEEe
Q 010933          440 SSLSNLTRGLY----RQA-HENS--S--SGH-HELS----YNLSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       440 ~~~~~l~~~~~----d~~-~iw~--~--~~~-~~~~----~~~~~~i~~l~~~p~~~~la~~~  488 (497)
                           ++++..    ++. ++|.  .  +.. ...+    .++...+..++|+|+++.++..+
T Consensus       371 -----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~  428 (719)
T 1z68_A          371 -----FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC  428 (719)
T ss_dssp             -----EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred             -----EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence                 444433    355 8882  2  211 1111    12556788999999999888654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=5e-21  Score=179.66  Aligned_cols=266  Identities=10%  Similarity=0.113  Sum_probs=170.4

Q ss_pred             cCCcceEEEEEcCCCCEEEEeec---CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .+...+..++|+|||+ |++++.   ++.|++|++.+++.                     +.+..+..+.         
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------~~~~~~~~~~---------   85 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------HKLNTVVAPG---------   85 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------------EEEEEEEEES---------
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------------EEeeeeecCC---------
Confidence            3556778899999999 555554   68999999977642                     3344444455         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                         ..+..++|  +|++++|++++ .++.|.+|++.. +....+.......                             
T Consensus        86 ---~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-----------------------------  131 (347)
T 3hfq_A           86 ---TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG-----------------------------  131 (347)
T ss_dssp             ---CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-----------------------------
T ss_pred             ---CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-----------------------------
Confidence               66889999  68999888887 789999999953 3322111000000                             


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                                       . .+.   ...+...+.+++|+|+|++++++ .++.|.+|++...+........    .....
T Consensus       132 -----------------~-~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~----~~~~g  186 (347)
T 3hfq_A          132 -----------------H-GPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL----TMEAG  186 (347)
T ss_dssp             -----------------C-CSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE----ECCTT
T ss_pred             -----------------C-CCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE----EcCCC
Confidence                             0 000   01234568899999999966666 7899999999843433221100    11123


Q ss_pred             CCeEEEEEeCCCCcEEEE-EeCCCeEEEEEccC--CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          264 EVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       264 ~~i~~~~~~~~~~~~l~~-~~~dg~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ..+..++|+|+| +++++ ...++.|++|++..  ++..  ....+......      + .....+..++|+|+|++|++
T Consensus       187 ~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~------~-~~~~~~~~i~~spdG~~l~v  256 (347)
T 3hfq_A          187 FGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD------Y-TAHNGAAAIRLSHDGHFLYV  256 (347)
T ss_dssp             CCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT------C-CSCCEEEEEEECTTSCEEEE
T ss_pred             CCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC------C-CCCCcceeEEECCCCCEEEE
Confidence            457889999999 75555 56689999999874  3321  00111110000      0 00135788999999998865


Q ss_pred             E-e-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-CcEEEEEcC
Q 010933          341 R-D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHG  410 (497)
Q Consensus       341 ~-~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~i~vw~~~  410 (497)
                      + . ++.|.+|++...+  +.+..+..+....               ..++|+|||++|++++.+ +.|.+|+++
T Consensus       257 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          257 SNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            4 4 4999999997423  3344444432221               589999999999888764 899999554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=4.7e-21  Score=175.13  Aligned_cols=234  Identities=12%  Similarity=0.128  Sum_probs=166.4

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecC-CccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ...|...|.+++|+|+|++|++++ ++.|++||+.+ ++.                       .....+|..        
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----------------------~~~~~~~~~--------   84 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----------------------EKVDTGFAT--------   84 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----------------------EECCCTTCC--------
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----------------------eEecccccc--------
Confidence            345788999999999999999987 78999999987 643                       223334421        


Q ss_pred             ccccceeEEEEEecCCCCEEEEEe--CCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s--~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                         ..|.+++|  +|++++|++++  .++..+||.++  ++....                                   
T Consensus        85 ---~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-----------------------------------  124 (297)
T 2ojh_A           85 ---ICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-----------------------------------  124 (297)
T ss_dssp             ---CBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-----------------------------------
T ss_pred             ---ccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEE-----------------------------------
Confidence               66889999  78999999998  44567777654  222111                                   


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                                + .. ...+..++|+|+++.|+ ++ .++.+.+|+++........       +.
T Consensus       125 --------------------------~-~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~-------~~  169 (297)
T 2ojh_A          125 --------------------------M-TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR-------LT  169 (297)
T ss_dssp             --------------------------C-CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-------CC
T ss_pred             --------------------------e-ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-------cc
Confidence                                      1 12 22488899999999887 56 8999999997533333322       55


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  338 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  338 (497)
                      .+...+.+++|+|++ ..|++++ .++.+++|++.. +...    ..+..             |...+..++|+|+|++|
T Consensus       170 ~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~----~~~~~-------------~~~~~~~~~~s~dg~~l  231 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV----ERITD-------------SAYGDWFPHPSPSGDKV  231 (297)
T ss_dssp             CSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCE----EECCC-------------CSEEEEEEEECTTSSEE
T ss_pred             cCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCc----EEEec-------------CCcccCCeEECCCCCEE
Confidence            677889999999999 7777665 589999999863 2221    22222             33568899999999998


Q ss_pred             EEEe-c-----------CeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          339 LSRD-Y-----------MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       339 ~~~~-~-----------~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      ++++ +           +.|++||+.. ++.  +..+..|...+               ..++|+|++++|++++.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          232 VFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEECC
T ss_pred             EEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEecc
Confidence            8763 2           4699999985 544  33344555433               5799999999999887754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=3.8e-20  Score=172.32  Aligned_cols=253  Identities=10%  Similarity=0.096  Sum_probs=167.5

Q ss_pred             CcceEEEEEcCCCCEEEEeec-CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ...+ +++|+|+|++|++++. ++.|.+||..+++.                      ....+..+.            .
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------~~~~~~~~~------------~   84 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------KVVAIQEGQ------------S   84 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------EEEEEEECS------------S
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------eEEecccCC------------C
Confidence            4556 9999999997776665 88999999987642                      023344444            4


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCc---cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      +..+++|  +|++++++++..++   .|.+||+.+++....                                       
T Consensus        85 ~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~---------------------------------------  123 (331)
T 3u4y_A           85 SMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST---------------------------------------  123 (331)
T ss_dssp             CCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEE---------------------------------------
T ss_pred             CccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEE---------------------------------------
Confidence            4555899  78999999555543   899999987764321                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCe-EEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                           +  .+.....+++|+|+|+.+++ + .++. |.+|++...+...... .   .......
T Consensus       124 ---------------------~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~~~~~  176 (331)
T 3u4y_A          124 ---------------------I--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFISGGT  176 (331)
T ss_dssp             ---------------------E--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEECSSS
T ss_pred             ---------------------E--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccccCCC
Confidence                                 1  12334689999999986655 4 6677 9999988444332210 0   0112345


Q ss_pred             CeEEEEEeCCCCcEE-EEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-
Q 010933          265 VITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-  342 (497)
                      .+..++|+|+| +++ +++..++.|++||+.+++... ....+..              ...+..++|+|+|++++++. 
T Consensus       177 ~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          177 RPFNITFTPDG-NFAFVANLIGNSIGILETQNPENIT-LLNAVGT--------------NNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             SEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC--------------SSCCCCEEECTTSSEEEEECS
T ss_pred             CccceEECCCC-CEEEEEeCCCCeEEEEECCCCcccc-eeeeccC--------------CCCCceEEECCCCCEEEEEEc
Confidence            57999999999 755 455568999999999876510 0122222              24578899999999877663 


Q ss_pred             -cCeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 010933          343 -YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  412 (497)
Q Consensus       343 -~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~  412 (497)
                       ++.|.+||+.+ ++.  +..+..+....        .........++|+||+++|++++. ++.|.+||+...
T Consensus       241 ~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          241 STVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             SEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence             38899999986 555  33333220000        001111135899999998876554 679999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=1.9e-20  Score=175.14  Aligned_cols=275  Identities=11%  Similarity=0.105  Sum_probs=169.8

Q ss_pred             cceeEEEEEecCCCCEEEEEeCC-ccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d-~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+..++|  +|++++|++++.+ +.|.+|++.  ++....                                       
T Consensus        38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~---------------------------------------   76 (343)
T 1ri6_A           38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTF---------------------------------------   76 (343)
T ss_dssp             SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEE---------------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceee---------------------------------------
Confidence            66889999  7899999988876 999999987  433221                                       


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                         +..+ ..+. .+..++|+|+++.++++  .++.|.+||+. .+.......    .+. ...
T Consensus        77 -------------------~~~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~----~~~-~~~  129 (343)
T 1ri6_A           77 -------------------AAES-ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVD----VVE-GLD  129 (343)
T ss_dssp             -------------------EEEE-ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEE----EEC-CCT
T ss_pred             -------------------cccc-ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccc----ccc-CCC
Confidence                               1111 2222 67899999999987665  68999999995 232221110    022 234


Q ss_pred             CeEEEEEeCCCCcEEEEEe-CCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          265 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      .+.+++|+|++ +.+++++ .++.|++||+.+ ++........+..            .....+..++|+|+|++++++.
T Consensus       130 ~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~pdg~~l~~~~  196 (343)
T 1ri6_A          130 GCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------VEGAGPRHMVFHPNEQYAYCVN  196 (343)
T ss_dssp             TBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------STTCCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeeccccccc------------CCCCCcceEEECCCCCEEEEEe
Confidence            57889999999 7777776 899999999987 4322100001111            0113577899999999876653


Q ss_pred             --cCeEEEEecCCC-Cce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCC--CC-
Q 010933          343 --YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV--GS-  413 (497)
Q Consensus       343 --~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~--~~-  413 (497)
                        ++.|++|++... ++.  ...+.......         .....+..++|+|++++|+ ++..++.|.+|++..  +. 
T Consensus       197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          197 ELNSSVDVWELKDPHGNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             TTTTEEEEEESSCTTSCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             CCCCEEEEEEecCCCCcEEEEeeccccCccc---------cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence              499999999631 222  22222111000         0001124799999999887 455799999999983  22 


Q ss_pred             cceEEEeccCcceeeeEeecCCCcccccccceeEee-ccCc-eecCCC---CCcc--cccccCCCeEEEEEecCCC
Q 010933          414 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQA-HENSSS---GHHE--LSYNLSSKLLHLAWHPTTN  482 (497)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~d~~-~iw~~~---~~~~--~~~~~~~~i~~l~~~p~~~  482 (497)
                      .....+..+.. +..+++++  ++..     +++++ .++. .+|...   +...  ..........+++|.|+.+
T Consensus       268 ~~~~~~~~~~~-~~~~~~s~--dg~~-----l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          268 SKEGFQPTETQ-PRGFNVDH--SGKY-----LIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEEEECSSS-CCCEEECT--TSSE-----EEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             EEeeeecCCCc-cceEEECC--CCCE-----EEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence            22233444444 88899998  5555     66666 5566 899221   1111  1112223455778877654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=5.7e-21  Score=197.54  Aligned_cols=289  Identities=11%  Similarity=0.064  Sum_probs=187.4

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..+.+++|  +|||+++++ +.|+.|++||+.+++...+.                                        
T Consensus        17 ~~~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~----------------------------------------   53 (723)
T 1xfd_A           17 IHDPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLI----------------------------------------   53 (723)
T ss_dssp             CCCCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEE----------------------------------------
T ss_pred             ccccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEe----------------------------------------
Confidence            44678899  688887665 78999999999887643321                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCC---CeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKP  256 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~  256 (497)
                                           ..|..   .|.+++|+|||+.|+++ .+         +.+++||+. +++...+     
T Consensus        54 ---------------------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l-----  106 (723)
T 1xfd_A           54 ---------------------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP-HGDPQSL-----  106 (723)
T ss_dssp             ---------------------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS-SCCCEEC-----
T ss_pred             ---------------------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC-CCceEec-----
Confidence                                 33332   48999999999999987 53         789999998 4443222     


Q ss_pred             CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc---------cccc
Q 010933          257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASIS  327 (497)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~  327 (497)
                      .....|...+..++|+|+| +.||+++. +.|++||+.+++..    +....+...    ..+.++.         ..+.
T Consensus       107 ~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~----~~~~~~~~~----~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A          107 DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAI----RVVSTGKEG----VIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCE----EEECCCBTT----TEEEEECCHHHHHTTSSSSE
T ss_pred             cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceE----EEecCCCCC----ceECcccceeEEEEeccCcc
Confidence            1234455668899999999 88888876 79999999887643    222211000    0001111         1347


Q ss_pred             EEEEeeCCCEEEEEe-cC----------------------------------eEEEEecCCCCceeeeeeeccccccccc
Q 010933          328 DIKFANDGQHLLSRD-YM----------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLC  372 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~-~~----------------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~  372 (497)
                      +++|||||++|++++ ++                                  .|++||+.+ ++....+..+.....   
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~---  252 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRM---  252 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGG---
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCC---
Confidence            899999999998864 22                                  788888875 554444543311000   


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeC----CCcEEEEEcCCCCcceEEEe-ccCccee----eeEeecCCCccccccc
Q 010933          373 DLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGSAGGITVE-AGKNENR----KPILQAAPRARRSSLS  443 (497)
Q Consensus       373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~vw~~~~~~~~~~~~~-~~~~~v~----~~~~~~~~~~~~~~~~  443 (497)
                            ....+..++|+|||++|++.+.    +..|++||+.+++.. ..+. .+...+.    .++|+|  +++.    
T Consensus       253 ------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~sp--dg~~----  319 (723)
T 1xfd_A          253 ------REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHEDESEAWLHRQNEEPVFSK--DGRK----  319 (723)
T ss_dssp             ------SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEEECSSCCCCCCCCCEECT--TSCS----
T ss_pred             ------ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce-EEEEeccCCEEeccCCCceEcC--CCCe----
Confidence                  0011268999999999977653    357999999988544 3333 3344443    788998  6665    


Q ss_pred             ceeE--eeccC----c-eec--C--CCCC---cccccccCCCeEE-EEEecCCCEEEEEeC----CceEEEe
Q 010933          444 NLTR--GLYRQ----A-HEN--S--SSGH---HELSYNLSSKLLH-LAWHPTTNLIACANG----NSLFFHY  496 (497)
Q Consensus       444 ~l~~--~~~d~----~-~iw--~--~~~~---~~~~~~~~~~i~~-l~~~p~~~~la~~~~----~~~~i~~  496 (497)
                       ++.  +..++    . .+|  .  .++.   ...+......+.. ++|+|||+.|+..+.    +...+|.
T Consensus       320 -l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          320 -FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             -EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             -EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence             554  44555    3 454  4  2333   3334434445555 699999999987663    3467774

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=9.4e-21  Score=195.29  Aligned_cols=280  Identities=8%  Similarity=0.049  Sum_probs=186.9

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ..|.+++|||| ++++.+ .++.|++||+.+++.                        ..+..+.            ..+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~  123 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV------------------------TYLFDTN------------EET  123 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence            57999999999 666655 459999999987642                        2233444            668


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCc-----hheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      .+++|  +|||+.|+++ .|+.|++|++.+     ++...+.......                                
T Consensus       124 ~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~--------------------------------  168 (706)
T 2z3z_A          124 ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET--------------------------------  168 (706)
T ss_dssp             TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT--------------------------------
T ss_pred             cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC--------------------------------
Confidence            88999  7899999885 679999999987     6544321111000                                


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c---------------------------------
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------------------------------  233 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---------------------------------  233 (497)
                           ..+..       .  .+ ..+...+.++.|+|||+.|+++ .                                 
T Consensus       169 -----~~~g~-------~--~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~  233 (706)
T 2z3z_A          169 -----LVYGQ-------A--VH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH  233 (706)
T ss_dssp             -----EEESS-------C--CG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred             -----eEccc-------c--hh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence                 00000       0  00 2334457789999999999886 3                                 


Q ss_pred             CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC-----eEEEEEccCCcccccccceecc
Q 010933          234 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRD  308 (497)
Q Consensus       234 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~  308 (497)
                      +..|++||+. +++...+.     ....|...+.+++|+|+| +.|++++.++     .|++||+.+++...   .....
T Consensus       234 ~~~l~~~d~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~~  303 (706)
T 2z3z_A          234 HVTVGIYHLA-TGKTVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---TLFVE  303 (706)
T ss_dssp             EEEEEEEETT-TTEEEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---EEEEE
T ss_pred             eeEEEEEECC-CCceEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---EEEEc
Confidence            2579999998 45443321     122567789999999999 8888887775     99999999873221   12111


Q ss_pred             cccccCCccccccccccccEEEEee--CCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeE
Q 010933          309 AAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  385 (497)
Q Consensus       309 ~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (497)
                      ...         .....+..++|+|  +|+++++++. +.++||++...++.+..+..+...+               ..
T Consensus       304 ~~~---------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v---------------~~  359 (706)
T 2z3z_A          304 TDK---------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV---------------TN  359 (706)
T ss_dssp             ECS---------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE---------------EE
T ss_pred             cCC---------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE---------------Ee
Confidence            000         0011346789999  9998888754 8888888764466677776655432               34


Q ss_pred             -EEEcCCCCEEEEEeC-CC----cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc
Q 010933          386 -CSVSGDGLHFATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  439 (497)
Q Consensus       386 -~~~s~~~~~l~s~~~-dg----~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  439 (497)
                       ++|+|+++.|+.++. ++    .|+.||+.++.  ...+. +...+..++|+|  +++.
T Consensus       360 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~sp--dg~~  414 (706)
T 2z3z_A          360 FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSP--DGSA  414 (706)
T ss_dssp             EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECT--TSSE
T ss_pred             eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECC--CCCE
Confidence             799999998876554 44    67777776653  23333 667788999998  5655

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=1.3e-20  Score=189.72  Aligned_cols=271  Identities=14%  Similarity=0.062  Sum_probs=180.6

Q ss_pred             CcceEEEEEcCCCCEEEEeec-CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ..+|++++|+|||++||+++. ||+++||++++++.                        ..+..|..           .
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~~-----------~   65 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREPI-----------N   65 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSCC-----------S
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeecccc-----------c
Confidence            457999999999999999886 99999999876542                        22333320           4


Q ss_pred             ceeEEEEEecCCCCEEEEEeC---CccEEEeecCc---hheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          111 KINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD---QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      .+..++|  +|| +.+++++.   +...++|.+..   +....                                     
T Consensus        66 ~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~-------------------------------------  105 (582)
T 3o4h_A           66 SVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR-------------------------------------  105 (582)
T ss_dssp             EECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE-------------------------------------
T ss_pred             ccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCcccc-------------------------------------
Confidence            6899999  677 67776664   55667766543   11110                                     


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCE--EEEEcCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                              + .. ...+...+|+|+|+.  ++++.++.+.+||+. +++...+.        .+
T Consensus       106 ------------------------l-~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~--------~~  150 (582)
T 3o4h_A          106 ------------------------L-EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA--------RL  150 (582)
T ss_dssp             ------------------------C-TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE--------EE
T ss_pred             ------------------------c-cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee--------cC
Confidence                                    0 11 112335577777764  344455556699998 55544431        12


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCC----CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  338 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  338 (497)
                      ..  .+++|+|+| +.|++++.+    +.|++||+.+++..     .+..             |...+..++|||||++|
T Consensus       151 ~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~-------------~~~~~~~~~~SpDG~~l  209 (582)
T 3o4h_A          151 PG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDS-------------GEGSFSSASISPGMKVT  209 (582)
T ss_dssp             SS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----EECC-------------SSCEEEEEEECTTSCEE
T ss_pred             CC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----Eeec-------------CCCccccceECCCCCEE
Confidence            22  789999999 999988877    78999999887642     2222             34668999999999999


Q ss_pred             EEEec-C--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          339 LSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       339 ~~~~~-~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      ++++. +  .|++||+.+ ++.. .+..+...+....       ..+....+|+|||.++++++.|+.+++|++  ++..
T Consensus       210 ~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          210 AGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             EEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             EEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence            97644 6  899999986 6555 5655554321000       000012339999999999999999999999  4222


Q ss_pred             eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc--eec
Q 010933          416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN  456 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~--~iw  456 (497)
                          ....+.+..++++   +++.     +++++.+..  .+|
T Consensus       279 ----~~~~~~v~~~~~s---dg~~-----l~~~s~~~~p~~l~  309 (582)
T 3o4h_A          279 ----EAPQGNHGRVVLW---RGKL-----VTSHTSLSTPPRIV  309 (582)
T ss_dssp             ----CCCSSEEEEEEEE---TTEE-----EEEEEETTEEEEEE
T ss_pred             ----ccCCCceEEEEec---CCEE-----EEEEcCCCCCCeEE
Confidence                2344677788887   4555     677766655  555

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=1.7e-19  Score=186.39  Aligned_cols=324  Identities=11%  Similarity=0.056  Sum_probs=197.6

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      ...+++|+|||++|+++  |+.|++||+.+++.                       ...+.+|...       .......
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~   65 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-----------------------SVFLENSTFD-------EFGHSIN   65 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-----------------------EEEECTTTTT-------TCCSCCC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCce-----------------------EEEEechhhh-------hhccccc
Confidence            45689999999999986  89999999998753                       3334555410       0002234


Q ss_pred             EEEEEecCCCCEEEEEeCC---------ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          114 RVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      +++|  +|||++|+.++.+         +.+.+||+.+++...+                                    
T Consensus        66 ~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------------  107 (740)
T 4a5s_A           66 DYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------------  107 (740)
T ss_dssp             EEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------------------------------------
T ss_pred             ceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc------------------------------------
Confidence            5788  7999999999876         4556888877764331                                    


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                                                ..|...+...+|||||+.|+.+.++.|++|+.. ++...++      +..++..
T Consensus       108 --------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~l------t~~g~~~  154 (740)
T 4a5s_A          108 --------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRI------TWTGKED  154 (740)
T ss_dssp             --------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEEC------CSCCBTT
T ss_pred             --------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEE------cCCCCcc
Confidence                                      456678999999999999999988899999998 4444432      1223322


Q ss_pred             Ce-----------------EEEEEeCCCCcEEEEEeCCC------------------------------------eEEEE
Q 010933          265 VI-----------------TSAEFHPIYCNLLAYSSSRG------------------------------------FVRLV  291 (497)
Q Consensus       265 ~i-----------------~~~~~~~~~~~~l~~~~~dg------------------------------------~i~v~  291 (497)
                      .+                 ..+.|+||| +.||.++.|.                                    .|++|
T Consensus       155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          155 IIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            22                 358999999 8888876432                                    34455


Q ss_pred             EccC---CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----c-CeEEEEecCCCCc----e--
Q 010933          292 DMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST----P--  357 (497)
Q Consensus       292 d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~lwd~~~~~~----~--  357 (497)
                      |+.+   ++... . ..+..       ...+.+|...+..++|+|||++++...    + ..|++||+.+ ++    +  
T Consensus       234 d~~~~~~~~~~~-~-~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~  303 (740)
T 4a5s_A          234 NTDSLSSVTNAT-S-IQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWNCLV  303 (740)
T ss_dssp             ETTSCCSSSCCC-E-EEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEEECG
T ss_pred             ECCCCCCCCcce-E-EEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-CccccceeE
Confidence            5544   31100 0 00000       000113566789999999999776642    1 4799999986 55    2  


Q ss_pred             eeee--eecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933          358 VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-S--NLLRIFSHGVGSAGGITVEAGKNENRKPIL  431 (497)
Q Consensus       358 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  431 (497)
                      +..+  ..+...+..          .......|+|||+.|+ ..+. +  ..|++|++.++..  ..+....-.+..+..
T Consensus       304 ~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~v~~~~~  371 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWEVIGIEA  371 (740)
T ss_dssp             GGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSCEEEEEE
T ss_pred             EEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEEEEEEEE
Confidence            2222  334433310          0012688999999877 6664 3  4588888876533  344444444544432


Q ss_pred             ecCCCcccccccceeEeec----cCc-eec--CCCC-Ccc-ccc----ccCCCeEEEEEecCCCEEEEEeCC
Q 010933          432 QAAPRARRSSLSNLTRGLY----RQA-HEN--SSSG-HHE-LSY----NLSSKLLHLAWHPTTNLIACANGN  490 (497)
Q Consensus       432 ~~~~~~~~~~~~~l~~~~~----d~~-~iw--~~~~-~~~-~~~----~~~~~i~~l~~~p~~~~la~~~~~  490 (497)
                       ++ ...+     ..++..    .+. ++|  .... ... .+.    +....+..++|+|++++++....+
T Consensus       372 -~d-~~~i-----~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          372 -LT-SDYL-----YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             -EC-SSEE-----EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred             -Ee-CCEE-----EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence             32 2222     344433    233 777  2111 111 111    123567899999999988766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=2e-19  Score=173.09  Aligned_cols=282  Identities=11%  Similarity=0.008  Sum_probs=173.0

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...++++++++++.++++|+.++ ++||+.......   ..            .... ...+..+    .....+.+...
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~------------~~~~-~~~~~~~----~~~~~~~~~~~   94 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NK------------PGDD-PNKIVDK----VQGLLVPMKFP   94 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CC------------TTCC-TTCEEEC----CCCEEECCSSC
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cc------------cccC-ccccccc----CccccccCCCc
Confidence            45689999999999999999887 999986532110   00            0000 0000000    00111222377


Q ss_pred             eeEEEEEecCCCCEEE----EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          112 INRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~----s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      |.+++|  ++++++|+    +++.|+.|++||+.++......   ..                                 
T Consensus        95 v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~---~~---------------------------------  136 (434)
T 2oit_A           95 IHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ---QK---------------------------------  136 (434)
T ss_dssp             EEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS---SC---------------------------------
T ss_pred             ccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcC---Cc---------------------------------
Confidence            999999  68999999    7889999999999875210000   00                                 


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                        .           ....... +.+|...|.+++|+|+ +..|+++ .||+|++||++.. .....       ..+|...
T Consensus       137 --~-----------~~~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~-------~~~~~~~  194 (434)
T 2oit_A          137 --R-----------PFAYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCA-------TLPSTVA  194 (434)
T ss_dssp             --C-----------CSEEEEC-CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEE-------EECGGGC
T ss_pred             --c-----------eeeeeec-cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceee-------ccCCCCc
Confidence              0           0001122 2689999999999997 7889998 9999999999844 33322       3468899


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y  343 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~  343 (497)
                      |.+++|+|+| ++|++|+.||.|++||++ ++..    ..+..|..      ....|...+.++.|++++.++++.+  +
T Consensus       195 v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~------~~~~~~~~v~~v~w~~~~~~l~~~~~~d  262 (434)
T 2oit_A          195 VTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF------YESDHPVRVLDVLWIGTYVFAIVYAAAD  262 (434)
T ss_dssp             EEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCTT------CCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred             eeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc------cCCCCceeEEEEEEecCceEEEEEccCC
Confidence            9999999999 999999999999999998 3322    22222110      0012345799999999988886642  2


Q ss_pred             C------eEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 010933          344 M------NLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV  411 (497)
Q Consensus       344 ~------~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~  411 (497)
                      |      .+++|+++... +.-..+..........+    ..... ..-+.+-++.+++++++. .+.|.|.....
T Consensus       263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~----~~r~~-~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSC----TERQH-HYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCC----SSSCC-CEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             CccCCCCceEEEEeccCCCCCCcceEecccCCCCCC----CCcCc-ceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            2      49999997522 11122222222111000    00100 012344466666665554 56677777543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=4.6e-20  Score=185.62  Aligned_cols=257  Identities=8%  Similarity=-0.029  Sum_probs=181.8

Q ss_pred             cceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      .+|++++|  +|||+.|++++. |++++||++.+++...+                                        
T Consensus        22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~l----------------------------------------   59 (582)
T 3o4h_A           22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKL----------------------------------------   59 (582)
T ss_dssp             SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEEC----------------------------------------
T ss_pred             cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEee----------------------------------------
Confidence            67999999  579999999886 99999999865553321                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCC-CCeeEEEeCCCCCEEEEE-c---CCeEEEEeCcc--CceeeEEeecCCCccCC
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHD-FNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~  261 (497)
                                            ..|. ..+..++|+|+ +.++++ .   +....+|.+..  .+....        +..
T Consensus        60 ----------------------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~--------l~~  108 (582)
T 3o4h_A           60 ----------------------NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR--------LEA  108 (582)
T ss_dssp             ----------------------CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE--------CTT
T ss_pred             ----------------------ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc--------ccC
Confidence                                  2333 57889999999 677666 4   45566665543  333222        111


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      . ..+...+|+|++...+++.+.++.+.+||+.+++..    .....                ...+++|||||++|+++
T Consensus       109 ~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~----------------~~~~~~~spDG~~la~~  167 (582)
T 3o4h_A          109 V-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARL----------------PGFGFVSDIRGDLIAGL  167 (582)
T ss_dssp             S-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEE----------------SSCEEEEEEETTEEEEE
T ss_pred             C-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecC----------------CCceEEECCCCCEEEEE
Confidence            1 223466888887444555555555669999887542    22222                12889999999999965


Q ss_pred             -ec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCc
Q 010933          342 -DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSA  414 (497)
Q Consensus       342 -~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~vw~~~~~~~  414 (497)
                       .+    +.|++||+.+ ++. ..+..+...+               ..++|||||++|+++..++  .|++||+.+++.
T Consensus       168 ~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             EEEETTEEEEEEEETTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred             EEcCCCCeEEEEEcCCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence             33    6799999875 443 4565555433               5899999999999888888  899999998754


Q ss_pred             ceEEEeccCcceeeeE--------eecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEE
Q 010933          415 GGITVEAGKNENRKPI--------LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIA  485 (497)
Q Consensus       415 ~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la  485 (497)
                      .  .+..|...+..++        |+|  ++.+     +++++.++. ++|..+ ....  .....|.+++|+ ++++++
T Consensus       231 ~--~~~~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~g-~~~~--~~~~~v~~~~~s-dg~~l~  297 (582)
T 3o4h_A          231 E--DLELPSKDFSSYRPTAITWLGYLP--DGRL-----AVVARREGRSAVFIDG-ERVE--APQGNHGRVVLW-RGKLVT  297 (582)
T ss_dssp             E--ECCCSCSHHHHHCCSEEEEEEECT--TSCE-----EEEEEETTEEEEEETT-EEEC--CCSSEEEEEEEE-TTEEEE
T ss_pred             E--EccCCCcChhhhhhccccceeEcC--CCcE-----EEEEEcCCcEEEEEEC-Ceec--cCCCceEEEEec-CCEEEE
Confidence            4  7778888888888        998  5565     888888988 999542 2211  344678899999 999888


Q ss_pred             EEeCC
Q 010933          486 CANGN  490 (497)
Q Consensus       486 ~~~~~  490 (497)
                      +++.+
T Consensus       298 ~~s~~  302 (582)
T 3o4h_A          298 SHTSL  302 (582)
T ss_dssp             EEEET
T ss_pred             EEcCC
Confidence            87743

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=3.7e-19  Score=171.24  Aligned_cols=229  Identities=9%  Similarity=0.087  Sum_probs=146.5

Q ss_pred             ccCCcceEEEEEcCCCCEEE----EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~la----sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      +.+...|++++|+|+|++||    +|+.|+.|+|||+.++....            .........+..+.+|.       
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~------------~~~~~~~~~~~~~~~h~-------  149 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA------------KQQKRPFAYHKLLKDAG-------  149 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT------------CSSCCCSEEEECCCSGG-------
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC------------cCCcceeeeeeccCCCC-------
Confidence            34567899999999999999    78899999999987541000            00000112245567788       


Q ss_pred             ccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          105 SLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                           ..|.+++|  +|+ +.+|++++.||+|++||++++....                                    
T Consensus       150 -----~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~------------------------------------  186 (434)
T 2oit_A          150 -----GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVC------------------------------------  186 (434)
T ss_dssp             -----GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEE------------------------------------
T ss_pred             -----CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCccee------------------------------------
Confidence                 88999999  455 7899999999999999998764211                                    


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                              .. .+|...|.+++|+|+|++|++| .|+.|++||.+ .. ....+.........|
T Consensus       187 ------------------------~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          187 ------------------------AT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDH  239 (434)
T ss_dssp             ------------------------EE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTS
T ss_pred             ------------------------ec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCC
Confidence                                    11 4678899999999999999999 99999999998 33 233322111111134


Q ss_pred             CCCeEEEEEeCCCCcEEEE-EeCCC------eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933          263 TEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  335 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~-~~~dg------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  335 (497)
                      ...+.+++|++++ .++++ ...||      .+++||++..+....  ..+......   ...+.+...+...+.+-++.
T Consensus       240 ~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~--~~~~~~~~~---~~~~~~~r~~~~~~~~l~dw  313 (434)
T 2oit_A          240 PVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHP--EIFVNFMEP---CYGSCTERQHHYYLSYIEEW  313 (434)
T ss_dssp             CEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCC--CEEEECCCS---SCCCCSSSCCCEEEEEEGGG
T ss_pred             ceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCC--cceEecccC---CCCCCCCcCcceeeehhccC
Confidence            4589999999987 65544 33443      389999986532100  111111100   00001112223334444777


Q ss_pred             CEEEEEec--CeEEEEecC
Q 010933          336 QHLLSRDY--MNLKLWDIR  352 (497)
Q Consensus       336 ~~l~~~~~--~~i~lwd~~  352 (497)
                      +++++++.  +.|.+....
T Consensus       314 ~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          314 DLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             TEEEEEETTCSBCEEEEEC
T ss_pred             CEEEEecCCCCceeEEEec
Confidence            88777643  666666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=4.6e-19  Score=166.22  Aligned_cols=216  Identities=12%  Similarity=0.083  Sum_probs=136.1

Q ss_pred             cceeEEEEEecCCCCEEEEEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      ..+..++|  +|+++ +++++.   ++.|.+|++.++....+                                      
T Consensus        40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~--------------------------------------   78 (347)
T 3hfq_A           40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL--------------------------------------   78 (347)
T ss_dssp             SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------------------------------
T ss_pred             CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------------------------------
Confidence            55778999  68888 565543   68999999976553221                                      


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCc----cC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MD  260 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~  260 (497)
                                          ..+ ..+...+..++|+|+|+.|+++  .++.|.+|++...+....+.......    ..
T Consensus        79 --------------------~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~  137 (347)
T 3hfq_A           79 --------------------NTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE  137 (347)
T ss_dssp             --------------------EEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred             --------------------eee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence                                111 2455678899999999987775  68999999996443322221110000    01


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc-CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      .....+.+++|+|+| +++++...++.|++||+. +++...  ...+..+            .......++|+|||++++
T Consensus       138 ~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~------------~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          138 QDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSE--QSVLTME------------AGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             CSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEE--EEEEECC------------TTCCEEEEEECTTSSEEE
T ss_pred             ccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEE--eeeEEcC------------CCCCCceEEECCCCCEEE
Confidence            123458899999999 666666678999999998 443210  0111110            012467899999999777


Q ss_pred             EEe--cCeEEEEecCCC-Cce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 010933          340 SRD--YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV  411 (497)
Q Consensus       340 ~~~--~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~  411 (497)
                      ++.  ++.|++|++... ++.  +..+.......         ........++|+|||++|+ +...++.|.+|++..
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            753  389999998741 332  22222211100         0001125799999999875 556689999999974

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=9.6e-19  Score=164.98  Aligned_cols=263  Identities=11%  Similarity=0.087  Sum_probs=165.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeecC----CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      +...+..++|+|||++|++++.+    +.|.+|+++...-                   ..+.+.....+.         
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~---------   99 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG---------   99 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence            56677889999999999999875    7999999876310                   112233333333         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                         .....+++    +++++++++ .++.|.+|++..........                                   
T Consensus       100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~-----------------------------------  137 (361)
T 3scy_A          100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPAS-----------------------------------  137 (361)
T ss_dssp             ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCS-----------------------------------
T ss_pred             ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccc-----------------------------------
Confidence               44566665    677777776 68899999997533211000                                   


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCce------ee-----EEe
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQ------CF-----NIV  252 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~------~~-----~~~  252 (497)
                             ........   .+..  ...+...+.+++|+|+|+.+++ + .++.|.+|++.....      ..     ...
T Consensus       138 -------~~~~~~g~---~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          138 -------DVIEFKGS---GPDK--ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             -------EEEECCCC---CSCT--TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             -------eeEEccCC---CCCc--cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence                   00000000   0000  0233456788999999997655 4 689999999874332      11     111


Q ss_pred             ecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEE
Q 010933          253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  331 (497)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  331 (497)
                            ...+...+.+++|+|+| +++++++ .++.|.+||+.+++...  ...+..          ...+......++|
T Consensus       206 ------~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~  266 (361)
T 3scy_A          206 ------KVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHL  266 (361)
T ss_dssp             ------ECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEE
T ss_pred             ------ecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEE
Confidence                  12334567899999999 7777766 68999999998664310  011111          0111234579999


Q ss_pred             eeCCCEEEEE-e--cCeEEEEecCC-CCc--eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcE
Q 010933          332 ANDGQHLLSR-D--YMNLKLWDIRM-DST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLL  404 (497)
Q Consensus       332 s~~g~~l~~~-~--~~~i~lwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i  404 (497)
                      +|||++|+++ .  ++.|.+|++.. .++  .+..+.. ...               ...++|+|||++|++++ .++.|
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l~~~~~~~~~v  330 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYLLVACRDTNVI  330 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEEEEEETTTTEE
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEEEEEECCCCCE
Confidence            9999988765 3  37999999962 133  2333333 111               15899999999998887 57899


Q ss_pred             EEEEcC
Q 010933          405 RIFSHG  410 (497)
Q Consensus       405 ~vw~~~  410 (497)
                      .+|+++
T Consensus       331 ~v~~~d  336 (361)
T 3scy_A          331 QIFERD  336 (361)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            997665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=1.5e-19  Score=168.64  Aligned_cols=232  Identities=13%  Similarity=0.006  Sum_probs=161.8

Q ss_pred             CeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe----------
Q 010933          216 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----------  283 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------  283 (497)
                      .+..++|+|+|+.++ ++ .++.|.+||+. .++....+....  ...+...+..++|+|+| +.|++++          
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCC--cccccccccceEECCCC-CEEEEEecccccccccc
Confidence            367899999998765 45 78999999998 444444332110  00022356789999999 8888876          


Q ss_pred             --CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeee
Q 010933          284 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       284 --~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~  361 (497)
                        .++.|.+||+.+++..    ..+..              ...+..++|+|+|++|+++ ++.|++||+.+ ++....+
T Consensus       111 ~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~  170 (337)
T 1pby_B          111 EVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDK  170 (337)
T ss_dssp             EECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEE
T ss_pred             cccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeee
Confidence              5799999999887543    22222              1357889999999988887 68999999986 7776666


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC------------------------cEEEEEcCCCCcceE
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN------------------------LLRIFSHGVGSAGGI  417 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg------------------------~i~vw~~~~~~~~~~  417 (497)
                      ..+...                ..+.|+|++++|+..+.++                        .|.+||+.+++....
T Consensus       171 ~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          171 PIQSWE----------------AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             CSTTTT----------------TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             eccccC----------------CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            544321                1357888888766554332                        468999998866545


Q ss_pred             EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC-CcccccccCCCeEEEEEecCCCEEEEEe-CCceEE
Q 010933          418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  494 (497)
Q Consensus       418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~-~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i  494 (497)
                      .+..+...+..++++|  +++.     ++++  ++. .+|.... ...........+.+++|+|+|++|++++ ++.+++
T Consensus       235 ~~~~~~~~~~~~~~s~--dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v  305 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNP--AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA  305 (337)
T ss_dssp             EEEECSSCEEEEEECT--TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred             ecCCCCCceeeEEECC--CCCE-----EEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEE
Confidence            5666777788899998  6655     5665  455 8883322 2222333445678999999999888877 556888


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |.
T Consensus       306 ~d  307 (337)
T 1pby_B          306 YD  307 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1e-19  Score=170.60  Aligned_cols=256  Identities=9%  Similarity=0.040  Sum_probs=170.7

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      .+++++++.++++++.++.|++||..+++.                       +..+..+..           ..+..++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~-----------~~~~~~~   49 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK-----------FGPGTAM   49 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC-----------CSSCEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCCC-----------CCCceeE
Confidence            457889999999999999999999987643                       333332210           2467899


Q ss_pred             EEecCCCCEEEE-EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933          117 WCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  195 (497)
Q Consensus       117 ~~~s~~~~~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (497)
                      |  +|++++++. ...++.|.+||+.+++..........+                                        
T Consensus        50 ~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~----------------------------------------   87 (349)
T 1jmx_B           50 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP----------------------------------------   87 (349)
T ss_dssp             E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------------
T ss_pred             E--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------------------------------------
Confidence            9  688886654 457899999999877643321100000                                        


Q ss_pred             eecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC------------CeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          196 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                     ..+...+..++|+|+|+.++++ .+            +.|.+||+.+ ++..+.+     ....+
T Consensus        88 ---------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~-----~~~~~  146 (349)
T 1jmx_B           88 ---------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPV-----RTFPM  146 (349)
T ss_dssp             ---------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCS-----EEEEC
T ss_pred             ---------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC-cccccee-----eeccC
Confidence                           0002246789999999999987 54            9999999984 2221110     01122


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc-cc--------------CC------------
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SH--------------GS------------  315 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~-~~--------------~~------------  315 (497)
                      ...+.+++|+|++ + +++++.  .|.+||+.+++...    .+..+.. .+              ..            
T Consensus       147 ~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (349)
T 1jmx_B          147 PRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  218 (349)
T ss_dssp             CSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             CCcccceeECCCC-c-EEEccC--cEEEEeCCCCceec----cccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence            3457889999999 7 555543  49999998876542    2211100 00              00            


Q ss_pred             ----------------------------ccccccccccccEEEEee-CCCEEEEEecCeEEEEecCCCCceeeeeeeccc
Q 010933          316 ----------------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       316 ----------------------------~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                                                  ...+..+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..+.....
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~  296 (349)
T 1jmx_B          219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHT  296 (349)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSC
T ss_pred             cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCC
Confidence                                        000001123456788999 99999988 89999999986 777777664433


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      .                .+++|+|++++|++++.++.|++||+.+++.+
T Consensus       297 ~----------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          297 Y----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             C----------------CEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             c----------------cceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            2                48999999999999999999999999887443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=6.8e-19  Score=164.09  Aligned_cols=250  Identities=11%  Similarity=0.056  Sum_probs=170.9

Q ss_pred             CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc-ccCccccccccccccc-ceeEEEEEecCC
Q 010933           45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWCAAPN  122 (497)
Q Consensus        45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~i~~l~~~~s~~  122 (497)
                      ++|++++.++.|++||..+++.                       +..+. ++.            . .+..++|  +|+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~--s~d   44 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMV--APG   44 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEE--CTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEE--cCC
Confidence            5789999999999999987643                       33332 221            1 4788999  688


Q ss_pred             CCEEEE-EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCc
Q 010933          123 GSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  201 (497)
Q Consensus       123 ~~~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (497)
                      ++.++. ++.++.|.+||+.+++..........                                               
T Consensus        45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------------------------------------------   77 (337)
T 1pby_B           45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-----------------------------------------------   77 (337)
T ss_dssp             SSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-----------------------------------------------
T ss_pred             CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc-----------------------------------------------
Confidence            877654 45678999999987764332110000                                               


Q ss_pred             cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-------------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          202 HARCQKVYPHAHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       202 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                               ..|...+..++|+|+|+.++++             .++.|.+||+. .++....+       . ....+.+
T Consensus        78 ---------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~~~  139 (337)
T 1pby_B           78 ---------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAF-------E-APRQITM  139 (337)
T ss_dssp             ---------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEE-------E-CCSSCCC
T ss_pred             ---------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEE-------e-CCCCcce
Confidence                     0122246678999999988876             36999999998 55554442       1 1345678


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc--c----ccCC---------------------------
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--E----SHGS---------------------------  315 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~--~----~~~~---------------------------  315 (497)
                      ++|+|++ ++|+++  ++.|++||+.+++...    .+..+.  .    .+..                           
T Consensus       140 ~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 1pby_B          140 LAWARDG-SKLYGL--GRDLHVMDPEAGTLVE----DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             EEECTTS-SCEEEE--SSSEEEEETTTTEEEE----EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             eEECCCC-CEEEEe--CCeEEEEECCCCcEee----eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence            8999999 777777  6889999998876431    111100  0    0000                           


Q ss_pred             --------------------ccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933          316 --------------------KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  375 (497)
Q Consensus       316 --------------------~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (497)
                                          ...+..+...+.+++|+|+|++++++ ++.|++||+.+ ++.+..+......        
T Consensus       213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~--------  282 (337)
T 1pby_B          213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY--------  282 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC--------
T ss_pred             cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce--------
Confidence                                00012233456679999999999988 69999999986 7777777654332        


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                              .+++|+|++++|++++.++.|++||+.+++.+ ..+..+
T Consensus       283 --------~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~-~~~~~~  320 (337)
T 1pby_B          283 --------YSVNVSTDGSTVWLGGALGDLAAYDAETLEKK-GQVDLP  320 (337)
T ss_dssp             --------CEEEECTTSCEEEEESBSSEEEEEETTTCCEE-EEEECG
T ss_pred             --------eeEEECCCCCEEEEEcCCCcEEEEECcCCcEE-EEEEcC
Confidence                    58999999999999999999999999988544 455443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=2.3e-18  Score=161.73  Aligned_cols=240  Identities=11%  Similarity=0.060  Sum_probs=167.7

Q ss_pred             CcceEEEEEcCCCCEEEEe-ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcc-cccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-FDYLKSLEIE  109 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~  109 (497)
                      ...+..++|+|+|++++++ ..++.|.+||..+++.                       +..+..+... ...    ...
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~~~~~~----~~~  140 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV-----------------------KGRLVLDDRKRTEE----VRP  140 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------EEEEESCCCCCCSS----CCC
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee-----------------------EEEEecCCCccccc----cCC
Confidence            4457789999999966554 5579999999988753                       2333332200 000    000


Q ss_pred             cceeEEEEEecCCCCEEEEEe--CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      ..+.+++|  +|+++++++++  .++.|.+||..+++....                                       
T Consensus       141 ~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~---------------------------------------  179 (353)
T 3vgz_A          141 LQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTA---------------------------------------  179 (353)
T ss_dssp             CEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEE---------------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEE---------------------------------------
Confidence            12688999  68888877775  578899999987664321                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                           + ..+...+..++|+|+|+.++++ .++.|.+||.. .++....+...   ..++...+
T Consensus       180 ---------------------~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~---~~~~~~~~  233 (353)
T 3vgz_A          180 ---------------------I-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL---DDGKEHFF  233 (353)
T ss_dssp             ---------------------E-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC---CSSSCCCE
T ss_pred             ---------------------e-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC---CCCCCccc
Confidence                                 1 2234456788999999999998 99999999998 55555443221   22355678


Q ss_pred             EEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c
Q 010933          267 TSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y  343 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~  343 (497)
                      ..++|+|++ +.+++++. ++.|.+||+.+++..    ..+..               .....++|+|+|++++++.  +
T Consensus       234 ~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v~~~~~  293 (353)
T 3vgz_A          234 INISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYVTHRQA  293 (353)
T ss_dssp             EEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEEEETTT
T ss_pred             ceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEEEECCC
Confidence            899999999 76665554 599999999887654    33332               1235799999999766653  4


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      +.|.+||+.+ ++.+..+......                ..++|+|||++|+++..++
T Consensus       294 ~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          294 GKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred             CeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence            9999999986 7777777655432                5899999999887777654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=5e-19  Score=168.66  Aligned_cols=238  Identities=13%  Similarity=0.138  Sum_probs=153.4

Q ss_pred             EEEcCCCCEEEEeec-CC--eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeE
Q 010933           38 IEFDKTGDYLAVGDR-GG--RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  114 (497)
Q Consensus        38 i~~sp~g~~lasg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~  114 (497)
                      .+|||||++||.++. +|  .|.+||+.+++.                       .....++.            ..+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~------------~~~~~   85 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG------------DNTFG   85 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC------------BCSSS
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC------------CCccc
Confidence            789999999999887 66  488888877643                       23334444            44556


Q ss_pred             EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933          115 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  194 (497)
Q Consensus       115 l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (497)
                      ++|  +||++.|+.++.++.|.+||+.+++...+.                                             
T Consensus        86 ~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~---------------------------------------------  118 (388)
T 3pe7_A           86 GFL--SPDDDALFYVKDGRNLMRVDLATLEENVVY---------------------------------------------  118 (388)
T ss_dssp             CEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEE---------------------------------------------
T ss_pred             eEE--cCCCCEEEEEeCCCeEEEEECCCCcceeee---------------------------------------------
Confidence            789  789999999999999999999887643321                                             


Q ss_pred             EeecCCccceeeeeeccCCCCCeeEE--EeCCCCCEEEEE-----------------------cCCeEEEEeCccCceee
Q 010933          195 ANVGNSVHARCQKVYPHAHDFNINSI--SNNSDCETFVSA-----------------------DDLRINLWNLEISDQCF  249 (497)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~~~-----------------------~d~~i~iwd~~~~~~~~  249 (497)
                                      ..+...+...  .++++++.++..                       .+..|++||+. .++..
T Consensus       119 ----------------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~  181 (388)
T 3pe7_A          119 ----------------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK-TGEST  181 (388)
T ss_dssp             ----------------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT-TCCEE
T ss_pred             ----------------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC-CCceE
Confidence                            1222223222  347888877631                       34689999998 44443


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeC-CCCcEEEEEeCC------CeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                      .        +..+...+..++|+| +| ..|+.+..+      ..|.++|+..+..     +.+..+.           .
T Consensus       182 ~--------l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~-----------~  236 (388)
T 3pe7_A          182 V--------ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHA-----------E  236 (388)
T ss_dssp             E--------EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCC-----------T
T ss_pred             E--------eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCC-----------C
Confidence            3        234556789999999 99 888877753      3788888765532     1111100           0


Q ss_pred             cccccEEEEeeCCCEEEEEe--cC----eEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCE
Q 010933          323 IASISDIKFANDGQHLLSRD--YM----NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  394 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~~--~~----~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  394 (497)
                      ...+..+.|+|||+.|+..+  ++    .|++||+.+ ++.  +..+.++.....         ..   ....|+|||+.
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~---------~~---~~~~~spdg~~  303 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS---------NY---DGSLMVGDGSD  303 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE---------CT---TSSEEEEEECC
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee---------cC---CCCeEccCCCc
Confidence            02467889999999776542  22    399999986 543  222222111000         00   13579999998


Q ss_pred             EEEE---------eCCCcEEEEEcCCC
Q 010933          395 FATG---------SYSNLLRIFSHGVG  412 (497)
Q Consensus       395 l~s~---------~~dg~i~vw~~~~~  412 (497)
                      |+..         ..+..|++||+.++
T Consensus       304 l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          304 APVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             C------------CCCCEEEEEETTTT
T ss_pred             ceeEeeeccccccCCCCEEEEEeccCC
Confidence            8854         45678999999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=2.2e-18  Score=162.62  Aligned_cols=258  Identities=11%  Similarity=0.014  Sum_probs=163.3

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEec-CCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++.                     ..+.....+             +.
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~---------------------~~~~~~~~~-------------g~   84 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI---------------------VHEASHPIG-------------GH   84 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE---------------------EEEEEEECC-------------SS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE---------------------EEeeEeecC-------------CC
Confidence            467899999999999999888 99999987 5532                     101111111             11


Q ss_pred             eeEEEEEecCCCCE--EEEEe-------------CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCC
Q 010933          112 INRVRWCAAPNGSM--FILST-------------NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  175 (497)
Q Consensus       112 i~~l~~~~s~~~~~--l~s~s-------------~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (497)
                      +..++|  +|++++  ++++.             .++.+.+|++.. ++...                            
T Consensus        85 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~----------------------------  134 (365)
T 1jof_A           85 PRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEK----------------------------  134 (365)
T ss_dssp             GGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEE----------------------------
T ss_pred             CccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcc----------------------------
Confidence            344677  788884  44443             578888888863 33211                            


Q ss_pred             CCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEee
Q 010933          176 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVD  253 (497)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~  253 (497)
                                                   .+..+...+...+.+++|+|+|+.++++  .++.|++|++...++......
T Consensus       135 -----------------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~  185 (365)
T 1jof_A          135 -----------------------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS  185 (365)
T ss_dssp             -----------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred             -----------------------------eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee
Confidence                                         0111101345678899999999988776  578999999972222221100


Q ss_pred             cCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEcc--CCcccc--cccceecccccccCCccccccccc----
Q 010933          254 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA----  324 (497)
Q Consensus       254 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----  324 (497)
                      .   ....+...+..++|+|+| +++++++. ++.|.+|++.  +++...  .....+..         .+.+|..    
T Consensus       186 ~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~~~~~  252 (365)
T 1jof_A          186 V---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDPETGK  252 (365)
T ss_dssp             E---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCTTTSS
T ss_pred             E---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCccccccc
Confidence            0   012245678999999999 88877765 7899999875  343210  00011111         0111222    


Q ss_pred             --cccEEE-EeeCCCEEEEEe-c-C-----eEEEEecCCCCceeee---eeecccccccccccCCCCCccceeEEEEcC-
Q 010933          325 --SISDIK-FANDGQHLLSRD-Y-M-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-  390 (497)
Q Consensus       325 --~i~~~~-~s~~g~~l~~~~-~-~-----~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  390 (497)
                        .+..++ |+|||++|+++. . +     .|.+|++...++....   ...+....               ..++|+| 
T Consensus       253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~sp~  317 (365)
T 1jof_A          253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAVSPC  317 (365)
T ss_dssp             BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCEEEC
T ss_pred             ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccceecCC
Confidence              478899 999999887763 2 3     8999999633554331   22222111               4789999 


Q ss_pred             --CCCEEEEEeCC-CcEEEEEcCCC
Q 010933          391 --DGLHFATGSYS-NLLRIFSHGVG  412 (497)
Q Consensus       391 --~~~~l~s~~~d-g~i~vw~~~~~  412 (497)
                        ||++|++++.+ +.|.+|+++..
T Consensus       318 ~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          318 PWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CcCCCEEEEEEcCCCeEEEEEEchh
Confidence              89999999874 89999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=3.4e-17  Score=154.30  Aligned_cols=272  Identities=9%  Similarity=0.042  Sum_probs=165.3

Q ss_pred             cceeEEEEEecCCCCEEEEEeCC----ccEEEeecCc--hheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      ..+..++|  +|++++|++++.+    +.|.+|++..  ++...+                                   
T Consensus        50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~-----------------------------------   92 (361)
T 3scy_A           50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL-----------------------------------   92 (361)
T ss_dssp             SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE-----------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe-----------------------------------
Confidence            55788999  7899999999875    7999998865  332211                                   


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEE---eecC---
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI---VDMK---  255 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~---~~~~---  255 (497)
                                             ... ..+......+++  +++.|+++  .++.|.+|++...+.....   ....   
T Consensus        93 -----------------------~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~  146 (361)
T 3scy_A           93 -----------------------NTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG  146 (361)
T ss_dssp             -----------------------EEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred             -----------------------eEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence                                   111 233445667777  77777665  7899999999744332111   0000   


Q ss_pred             CCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCcc------cccc--cceecccccccCCccccccccccc
Q 010933          256 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL------CDHS--ARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      +.....+...+++++|+|+| +++++++ .++.|++|++.....      +...  ......            .+....
T Consensus       147 ~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~  213 (361)
T 3scy_A          147 PDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGP  213 (361)
T ss_dssp             SCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCE
T ss_pred             CCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCC
Confidence            00011233456889999999 7665554 589999999875431      1000  000010            112456


Q ss_pred             cEEEEeeCCCEEEEEe--cCeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-
Q 010933          327 SDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-  401 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-  401 (497)
                      ..++|+|+|++++++.  ++.|.+|++.. ++.  +..+......            ......++|+|||++|+++..+ 
T Consensus       214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          214 RHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSS
T ss_pred             eEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCC
Confidence            7899999999887765  49999999984 543  2222221110            0011589999999999776654 


Q ss_pred             -CcEEEEEcC--CCCc-ceEEEeccCcceeeeEeecCCCcccccccceeEee-ccCc-eec--C--CCCCcccc-cccCC
Q 010933          402 -NLLRIFSHG--VGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQA-HEN--S--SSGHHELS-YNLSS  470 (497)
Q Consensus       402 -g~i~vw~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~d~~-~iw--~--~~~~~~~~-~~~~~  470 (497)
                       +.|.+|++.  ++.. ....+.. ...+..++|+|  ++++     |++++ .++. .+|  .  .++..... ..+..
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp--dg~~-----l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~  352 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP--NGKY-----LLVACRDTNVIQIFERDQATGLLTDIKKDIKVD  352 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT--TSCE-----EEEEETTTTEEEEEEECTTTCCEEECSCCEECS
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC--CCCE-----EEEEECCCCCEEEEEEECCCCcEeecceeeeCC
Confidence             899999996  3332 2233333 45678899998  6666     67766 4455 786  2  22221111 12334


Q ss_pred             CeEEEEEe
Q 010933          471 KLLHLAWH  478 (497)
Q Consensus       471 ~i~~l~~~  478 (497)
                      .+.++.|.
T Consensus       353 ~p~~v~~~  360 (361)
T 3scy_A          353 KPVCLKFV  360 (361)
T ss_dssp             SEEEEEEE
T ss_pred             CCeEEEEc
Confidence            67788875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=5.4e-18  Score=175.04  Aligned_cols=271  Identities=12%  Similarity=0.073  Sum_probs=173.4

Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .+++|  +|+++ ++..+.|+.|++||+.+++...+.                                           
T Consensus        19 ~~~~~--s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~-------------------------------------------   52 (719)
T 1z68_A           19 FFPNW--ISGQE-YLHQSADNNIVLYNIETGQSYTIL-------------------------------------------   52 (719)
T ss_dssp             CCCEE--SSSSE-EEEECTTSCEEEEESSSCCEEEEE-------------------------------------------
T ss_pred             CccEE--CCCCe-EEEEcCCCCEEEEEcCCCcEEEEE-------------------------------------------
Confidence            36789  68885 555557999999999887744321                                           


Q ss_pred             EEEeecCCccceeeeeeccCCC---CCeeEEEeCCCCCEEEEE-c---------CCeEEEEeCccCceeeEEeecCCCcc
Q 010933          193 KIANVGNSVHARCQKVYPHAHD---FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                        ..|.   ..+.+++|+|||+.|+++ .         ++.|++||+. +++....        
T Consensus        53 ------------------~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~g~~~~~--------  105 (719)
T 1z68_A           53 ------------------SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-NGEFVRG--------  105 (719)
T ss_dssp             ------------------CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECCS--------
T ss_pred             ------------------ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-CCccccc--------
Confidence                              2222   247899999999999987 5         6899999998 5544210        


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc---------ccEEE
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS---------ISDIK  330 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~~  330 (497)
                      ......+..++|+|+| +.|+++. ++.|++||+.+++..    +.... .   .....+.++...         ..+++
T Consensus       106 ~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~----~l~~~-~---~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A          106 NELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPF----QITFN-G---RENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             SCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCE----ECCCC-C---BTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             eecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcE----EEecC-C---CcCCeEcccccceeeeecccCcccEE
Confidence            1112467889999999 8888875 789999999887643    11111 0   000111222222         26899


Q ss_pred             EeeCCCEEEEEe-c-C---------------------------------eEEEEecCCCCcee--ee------eeecccc
Q 010933          331 FANDGQHLLSRD-Y-M---------------------------------NLKLWDIRMDSTPV--AT------FKIHEHL  367 (497)
Q Consensus       331 ~s~~g~~l~~~~-~-~---------------------------------~i~lwd~~~~~~~~--~~------~~~~~~~  367 (497)
                      |||||++|++++ + +                                 .|++||+.. ++..  ..      +.+|...
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcce
Confidence            999999999864 2 1                                 788999875 4432  11      1223322


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CcEEEEE----cCCCCcceEEE----eccCccee-----eeE
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFS----HGVGSAGGITV----EAGKNENR-----KPI  430 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~vw~----~~~~~~~~~~~----~~~~~~v~-----~~~  430 (497)
                                     +..++|+||++++++....    ..|.+||    +.+++.. ..+    ..|...+.     .+.
T Consensus       255 ---------------~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  318 (719)
T 1z68_A          255 ---------------FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPV  318 (719)
T ss_dssp             ---------------EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCE
T ss_pred             ---------------EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccE
Confidence                           2689999998877775432    2488899    7766433 233    46777776     788


Q ss_pred             eecCCCcccccccceeEeeccCc-eec--C-CCCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933          431 LQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSYNLSSKLLHLAWHPTTNLIACANG  489 (497)
Q Consensus       431 ~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~  489 (497)
                      |+|  +++.   ..+++...++. .+|  . .+.....+..+...+..+.++ +++.|+..+.
T Consensus       319 ~sp--dg~~---l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~  375 (719)
T 1z68_A          319 FSY--DAIS---YYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSN  375 (719)
T ss_dssp             ECT--TSSC---EEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred             ECC--CCCe---EEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEe
Confidence            998  5554   01223445555 666  2 222333444555668888877 8887776664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=2.4e-17  Score=168.59  Aligned_cols=297  Identities=9%  Similarity=0.020  Sum_probs=181.6

Q ss_pred             cCCcceEEEEEcCCCCEEEEe--ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .|...|..++|++++-++++.  +.++...||....+..                       ...+..|.          
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~l~~~~----------   67 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-----------------------EESALPAP----------   67 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-----------------------EEESSCTT----------
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-----------------------cceeCCCC----------
Confidence            478899999999887777777  5688999999643321                       22333343          


Q ss_pred             ccccee---------EEEEEecCCCCE-EEEEeC-CccEEEeecC--c-hheeccccCCCCCccccccccccccCccccC
Q 010933          108 IEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  173 (497)
Q Consensus       108 ~~~~i~---------~l~~~~s~~~~~-l~s~s~-d~~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (497)
                        ..+.         ...|+.+||++. |+.++. +..|.+|++.  + +....+....                     
T Consensus        68 --~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---------------------  124 (662)
T 3azo_A           68 --WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---------------------  124 (662)
T ss_dssp             --CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC---------------------
T ss_pred             --ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc---------------------
Confidence              2233         456653489988 776653 4556666654  2 3322110000                     


Q ss_pred             CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC----------CeEEEEeC
Q 010933          174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRINLWNL  242 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----------~~i~iwd~  242 (497)
                                                          ...|...+.+++|+|||+.|+++ .+          ..|++||+
T Consensus       125 ------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A          125 ------------------------------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             ------------------------------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             ------------------------------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence                                                01155678899999999999987 55          58999999


Q ss_pred             ccC-----ceeeEEeecCCCccC-CCCCCeEEEEEeCCCCcEEEEEeCC--------CeEEEEEcc-CCcccccccceec
Q 010933          243 EIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMR-QSALCDHSARILR  307 (497)
Q Consensus       243 ~~~-----~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~~~~~~~~~~~~  307 (497)
                      ...     +....        +. .+...+..++|+|+| +.|+.++.+        ..|++||+. +++.. .......
T Consensus       169 ~~~~~~~~~~~~~--------l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~~l~~  238 (662)
T 3azo_A          169 DGSAAADRSAVRE--------LSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTRTLLG  238 (662)
T ss_dssp             TSTTTTCGGGSEE--------SSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEEEEEE
T ss_pred             CCCccccCCceeE--------EEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccEEeCC
Confidence            831     33332        33 455677889999999 888887755        379999998 45210 0002221


Q ss_pred             ccccccCCccccccccccccEEEEeeCCCEEEEEec-C--eEEEEecCCCCceeeeeeecccccccccccCCCCCcccee
Q 010933          308 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  384 (497)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (497)
                      .             |...+..+.|+|||+++++++. +  .|.+||+.. ++.......+....       ......++.
T Consensus       239 ~-------------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~  297 (662)
T 3azo_A          239 G-------------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMR  297 (662)
T ss_dssp             E-------------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCC
T ss_pred             C-------------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cceeeccccccccc-------CccccccCc
Confidence            1             2356889999999997766643 5  677777654 54443333322210       000111124


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          385 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       385 ~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .++|+|+++++++++. +.++||.++........+..+...+..+. ++..+...     +++++.+.. .+|
T Consensus       298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~-s~~~~~~~-----~~~~~~~~~~~i~  363 (662)
T 3azo_A          298 WFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATL-TVSGTRAV-----GVAASPRTAYEVV  363 (662)
T ss_dssp             SEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEE-EEETTEEE-----EEEEETTEEEEEE
T ss_pred             eEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEE-ecCCCEEE-----EEEcCCCCCCEEE
Confidence            7999999999999999 99999954422222467777777776651 33212222     445554444 666

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=6.5e-16  Score=140.42  Aligned_cols=261  Identities=12%  Similarity=0.163  Sum_probs=177.4

Q ss_pred             ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT   91 (497)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (497)
                      ..|.+...|+...  ...++-..+.+++++|+|+++++...++.|.+||.+...                        +.
T Consensus        11 ~~~~~~~~~g~~g--~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~------------------------~~   64 (286)
T 1q7f_A           11 QRMIYHCKFGEFG--VMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF------------------------KF   64 (286)
T ss_dssp             EEECEEEEECCBS--SSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE------------------------EE
T ss_pred             ceeEEEEeccCCC--CCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE------------------------EE
Confidence            3455556666533  334566789999999999988888889999999976421                        11


Q ss_pred             cc------cccCcccccccccccccceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccc
Q 010933           92 EF------QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  164 (497)
Q Consensus        92 ~~------~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (497)
                      .+      .+|.            ..+..+++. .+++.++++... ++.|.+|+. +++....                
T Consensus        65 ~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~----------------  114 (286)
T 1q7f_A           65 QFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRK----------------  114 (286)
T ss_dssp             EECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEE----------------
T ss_pred             EecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEE----------------
Confidence            12      1233            457888884 245555555533 789999984 3332211                


Q ss_pred             cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933          165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  243 (497)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~  243 (497)
                                                                  +...+...+..++++++|+++++. .++.|.+||..
T Consensus       115 --------------------------------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  150 (286)
T 1q7f_A          115 --------------------------------------------FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  150 (286)
T ss_dssp             --------------------------------------------ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             --------------------------------------------ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence                                                        102334567899999999988887 88999999976


Q ss_pred             cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                       . +....+.     ...+...+..++++|+| +++++...++.|++||... +..    ..+..           .++.
T Consensus       151 -g-~~~~~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~~----~~~~~-----------~g~~  206 (286)
T 1q7f_A          151 -G-NVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-QYL----RQIGG-----------EGIT  206 (286)
T ss_dssp             -S-CEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-CEE----EEESC-----------TTTS
T ss_pred             -C-CEEEEeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-CEE----EEEcc-----------CCcc
Confidence             3 3333321     12344568999999999 8777777899999999753 222    22222           0112


Q ss_pred             ccccEEEEeeCCCEEEEEec-C-eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933          324 ASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  401 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~-~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d  401 (497)
                      ..+..++++++|+++++... + .|++||..  ++.+..+..+....          .   ..+++++|+|+++++ +.|
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~----------~---~~~i~~~~~g~l~vs-~~~  270 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA----------Q---CFDVALMDDGSVVLA-SKD  270 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS----------C---EEEEEEETTTEEEEE-ETT
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC----------c---ceeEEECCCCcEEEE-CCC
Confidence            45788999999988888754 4 99999964  67777776554321          0   158999999987777 679


Q ss_pred             CcEEEEEcCCC
Q 010933          402 NLLRIFSHGVG  412 (497)
Q Consensus       402 g~i~vw~~~~~  412 (497)
                      ++|++|++...
T Consensus       271 ~~v~v~~~~~~  281 (286)
T 1q7f_A          271 YRLYIYRYVQL  281 (286)
T ss_dssp             TEEEEEECSCC
T ss_pred             CeEEEEEcccc
Confidence            99999998654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=2.2e-16  Score=163.13  Aligned_cols=278  Identities=9%  Similarity=0.058  Sum_probs=170.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ....+++|  ++|+++++++  |+.|++|++.+++...+.....                                    
T Consensus        17 ~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~------------------------------------   56 (740)
T 4a5s_A           17 LKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST------------------------------------   56 (740)
T ss_dssp             CCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT------------------------------------
T ss_pred             ccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechh------------------------------------
Confidence            34678999  6888888876  9999999999887543211100                                    


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCCCcc
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                          ...+.....+++|||||+.|+.+ .+         +.+.+||+. +++...        +
T Consensus        57 --------------------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~~--------l  107 (740)
T 4a5s_A           57 --------------------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLIT--------E  107 (740)
T ss_dssp             --------------------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECC--------S
T ss_pred             --------------------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEEE--------c
Confidence                                01112233458899999999987 54         667899999 555433        5


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc---------ccccEEE
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIK  330 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~  330 (497)
                      ..+...+..++|+|+| +.||.+ .++.|++||+.+++...   -...+     .....+.++.         +....+.
T Consensus       108 ~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~---lt~~g-----~~~~~~~g~~~~v~~ee~~~~~~~~~  177 (740)
T 4a5s_A          108 ERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYR---ITWTG-----KEDIIYNGITDWVYEEEVFSAYSALW  177 (740)
T ss_dssp             SCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEE---CCSCC-----BTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             ccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEE---EcCCC-----CccceecCcccccccchhcCCCcceE
Confidence            5677889999999999 888887 46899999998876431   00111     0001112222         2234689


Q ss_pred             EeeCCCEEEEEe-c-C-----------------------------------eEEEEecCC---CCc-eeeeeee------
Q 010933          331 FANDGQHLLSRD-Y-M-----------------------------------NLKLWDIRM---DST-PVATFKI------  363 (497)
Q Consensus       331 ~s~~g~~l~~~~-~-~-----------------------------------~i~lwd~~~---~~~-~~~~~~~------  363 (497)
                      |||||++||.++ | +                                   .|++||+.+   +.. ....+..      
T Consensus       178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~  257 (740)
T 4a5s_A          178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI  257 (740)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred             ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence            999999998863 2 4                                   355555542   110 1112211      


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCcEEEEEcCCCC----cc-eEEE--eccCccee-----
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS----AG-GITV--EAGKNENR-----  427 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~vw~~~~~~----~~-~~~~--~~~~~~v~-----  427 (497)
                      +...               +..++|+|||+.++....    +..|++||+.+++    .. ...+  +.|...+.     
T Consensus       258 ~~~~---------------~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~  322 (740)
T 4a5s_A          258 GDHY---------------LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS  322 (740)
T ss_dssp             SCEE---------------EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred             CCeE---------------EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence            2111               268999999997765543    3479999999886    11 1222  55666555     


Q ss_pred             eeEeecCCCccccccccee-Eee-ccCc-eec---CCCCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933          428 KPILQAAPRARRSSLSNLT-RGL-YRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  489 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~-~~~-~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~  489 (497)
                      .+.|+|  |++.     ++ ..+ .+|. .||   ..+.....+......|..+. .+|++.|+..+.
T Consensus       323 ~p~fsp--DG~~-----l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~  382 (740)
T 4a5s_A          323 EPHFTL--DGNS-----FYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISN  382 (740)
T ss_dssp             CCEECT--TSSE-----EEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred             CceEcC--CCCE-----EEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence            788988  6655     55 554 4444 666   23333344444555666654 355776665543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=2.1e-16  Score=149.06  Aligned_cols=237  Identities=10%  Similarity=-0.006  Sum_probs=142.2

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecC-chheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      ..+..++|  +|++++|++++.+ .|.+|++. +++......                                      
T Consensus        40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~--------------------------------------   78 (365)
T 1jof_A           40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS--------------------------------------   78 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--------------------------------------
T ss_pred             CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--------------------------------------
Confidence            35788999  7899999998887 89999986 555322100                                      


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCE--EEEE--------------cCCeEEEEeCccCceeeEEe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIV  252 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~--------------~d~~i~iwd~~~~~~~~~~~  252 (497)
                                          . ..+ ..+..++|+|+|+.  ++++              .++.+.+|++...+.....+
T Consensus        79 --------------------~-~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~  136 (365)
T 1jof_A           79 --------------------H-PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV  136 (365)
T ss_dssp             --------------------E-ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred             --------------------e-ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence                                0 011 12445788999985  3333              47899999997444433321


Q ss_pred             ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEcc-CCcccccccceecccccccCCccccccccccccEEE
Q 010933          253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                      ...   ...+...+.+++|+|+| ++|+++.. ++.|++||+. +++...  ...+..           ..|...+..++
T Consensus       137 ~~~---~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~  199 (365)
T 1jof_A          137 QNY---EYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVA  199 (365)
T ss_dssp             EEE---ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEE
T ss_pred             eeE---EeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeE
Confidence            100   01245678999999999 87777654 6899999998 664321  011110           00124578999


Q ss_pred             EeeCCCEEEEEe--cCeEEEEecCC-CCcee---eeeeecccccccccccCCCCC----ccceeEEE-EcCCCCEEEEEe
Q 010933          331 FANDGQHLLSRD--YMNLKLWDIRM-DSTPV---ATFKIHEHLRPKLCDLYNNDS----IFDKFECS-VSGDGLHFATGS  399 (497)
Q Consensus       331 ~s~~g~~l~~~~--~~~i~lwd~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~s~~~~~l~s~~  399 (497)
                      |+|+|++++++.  ++.|.+|++.. .++..   ..+.......      .....    ......++ |+|||++|++++
T Consensus       200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI------PDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC------CCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc------CCcccccccccccccEEEECCCCCEEEEEC
Confidence            999999988764  38999998753 14432   1221110000      00000    00125899 999999988776


Q ss_pred             CCC------cEEEEEcC-CCCcceE---EEeccCcceeeeEeec
Q 010933          400 YSN------LLRIFSHG-VGSAGGI---TVEAGKNENRKPILQA  433 (497)
Q Consensus       400 ~dg------~i~vw~~~-~~~~~~~---~~~~~~~~v~~~~~~~  433 (497)
                      .+.      .|.+|++. +++ +..   ....+......++++|
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEE
T ss_pred             CCCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecC
Confidence            532      89999996 443 212   1222333445555655

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=1.8e-16  Score=148.47  Aligned_cols=288  Identities=9%  Similarity=-0.017  Sum_probs=166.8

Q ss_pred             cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecC
Q 010933          120 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  199 (497)
Q Consensus       120 s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (497)
                      ++++.++++++.++.|.+||+.+++......                                                 
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-------------------------------------------------   38 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-------------------------------------------------   38 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEE-------------------------------------------------
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEe-------------------------------------------------
Confidence            5677888999999999999998876433210                                                 


Q ss_pred             CccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCc
Q 010933          200 SVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  277 (497)
Q Consensus       200 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  277 (497)
                                 .+....+..++|+|+|+.++ ++ .++.|.+||+. .++....+..... .......+..++|+|+| +
T Consensus        39 -----------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~~~~~~~~~~-~~~~~~~~~~~~~spdg-~  104 (349)
T 1jmx_B           39 -----------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSSV-PGEVGRSMYSFAISPDG-K  104 (349)
T ss_dssp             -----------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCCS-TTEEEECSSCEEECTTS-S
T ss_pred             -----------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcEEEEEEcccc-cccccccccceEECCCC-C
Confidence                       11112467899999998665 45 78999999998 4554443221100 00002347789999999 8


Q ss_pred             EEEEEeCC------------CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933          278 LLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  345 (497)
Q Consensus       278 ~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~  345 (497)
                      +|++++.+            +.|.+||+.+++... ....+..              ...+.+++|+|+|+ ++++ .+.
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~s~dg~-l~~~-~~~  167 (349)
T 1jmx_B          105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPM--------------PRQVYLMRAADDGS-LYVA-GPD  167 (349)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEEC--------------CSSCCCEEECTTSC-EEEE-SSS
T ss_pred             EEEEEcccccccccccccCCCeEEEEECCCccccc-eeeeccC--------------CCcccceeECCCCc-EEEc-cCc
Confidence            88888865            899999998865321 1122221              23588999999999 5554 345


Q ss_pred             EEEEecCCCCceeeeeeecccccccc--------cccCCCCCc-cceeEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKL--------CDLYNNDSI-FDKFECSVSGDGLHFATGSYS-NLLRIFSHGVGSAG  415 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~s~~~~~l~s~~~d-g~i~vw~~~~~~~~  415 (497)
                      |++||+.+ ++.+..+..+.......        ......... .....+++++++......... ..+..++..+++..
T Consensus       168 i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  246 (349)
T 1jmx_B          168 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  246 (349)
T ss_dssp             EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             EEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence            99999986 77766665432100000        000000000 011346666654321111111 11222555554433


Q ss_pred             eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC-CcccccccCCCeEEEEEecCCCEEEEEe-CCce
Q 010933          416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSL  492 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~-~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~  492 (497)
                      ...+..+...+..++++|. +++.     ++++  ++. .+|.... ...........+.+++|+|++++|++++ ++.+
T Consensus       247 ~~~~~~~~~~~~~~~~sp~-dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v  318 (349)
T 1jmx_B          247 TQEFADLTELYFTGLRSPK-DPNQ-----IYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL  318 (349)
T ss_dssp             EEEEEECSSCEEEEEECSS-CTTE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             ecccccCCCcceeeEecCC-CCCE-----EEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeE
Confidence            3334445566778888872 3333     5555  555 8883322 2222233445677999999999888766 5568


Q ss_pred             EEEe
Q 010933          493 FFHY  496 (497)
Q Consensus       493 ~i~~  496 (497)
                      ++|.
T Consensus       319 ~v~d  322 (349)
T 1jmx_B          319 AVFN  322 (349)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8886

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=2.1e-16  Score=150.80  Aligned_cols=291  Identities=11%  Similarity=0.049  Sum_probs=173.3

Q ss_pred             ceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           34 IVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      .+.+++|||||++||.....   ..|.+||+.+++.                        ..+..+..           .
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------~~l~~~~~-----------~   81 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------VQLTEGKG-----------D   81 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------------EECCCSSC-----------B
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------------EEeecCCC-----------C
Confidence            37788999999998877543   3788889877642                        11222220           2


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC-ccc-------------cCCCC
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMN-------------EHNPP  176 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~  176 (497)
                      ....+.|  +||++.|+.++.++.|.+|++.+++...+......        ..+.+. +..             ....+
T Consensus        82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~~~~~sp  151 (396)
T 3c5m_A           82 NTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEILKRDWQP  151 (396)
T ss_dssp             CTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred             ccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCccccccccccccCC
Confidence            2233678  78999999999999999999988775544332211        011111 111             22344


Q ss_pred             Cccccccccc---ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cC------CeEEEEeCccC
Q 010933          177 SFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEIS  245 (497)
Q Consensus       177 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d------~~i~iwd~~~~  245 (497)
                      +...++....   .....+.+|++...   +....  ..+...+..+.|+| +++.|+.. .+      ..|.+||+. +
T Consensus       152 dg~~~~~~~~~~~~~~~~l~~~d~~~g---~~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~  225 (396)
T 3c5m_A          152 LTSWEKFAEFYHTNPTCRLIKVDIETG---ELEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-G  225 (396)
T ss_dssp             CCSHHHHHHHHHTCCCEEEEEEETTTC---CEEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-S
T ss_pred             CCcceeeeeeccCCCcceEEEEECCCC---cEEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-C
Confidence            4444433321   23457888887643   23222  24567789999999 78877764 32      468888886 3


Q ss_pred             ceeeEEeecCCCccCCC--CCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEccCCcccccccceecccccccCCccc
Q 010933          246 DQCFNIVDMKPSNMDDL--TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSF  318 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (497)
                      +....        +..+  ...+..++|+|+| +.|+.++.+     +.|++||+.+++..    .....          
T Consensus       226 ~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~----------  282 (396)
T 3c5m_A          226 SNVRK--------IKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE----EVMVM----------  282 (396)
T ss_dssp             CCCEE--------SSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE----EEEEC----------
T ss_pred             CceeE--------eeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE----EeeeC----------
Confidence            33322        2222  2357889999999 766666543     45999999877532    11111          


Q ss_pred             cccccccccEEEEee-CCCEEEEEe-----------------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCc
Q 010933          319 FTEIIASISDIKFAN-DGQHLLSRD-----------------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI  380 (497)
Q Consensus       319 ~~~~~~~i~~~~~s~-~g~~l~~~~-----------------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (497)
                           .... +.|+| +|++++++.                 +..|++||+.. ++. ..+..+......    +..+..
T Consensus       283 -----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~~~~~~  350 (396)
T 3c5m_A          283 -----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----LDGDRQ  350 (396)
T ss_dssp             -----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----BTTBSS
T ss_pred             -----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----cccccc
Confidence                 1122 88999 999888742                 27899999975 443 344444321000    000000


Q ss_pred             cceeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 010933          381 FDKFECSVSGDGLHFATGSY-SNLLRIFSHG  410 (497)
Q Consensus       381 ~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~  410 (497)
                      .....++|+|||+.|+.++. ++...||.++
T Consensus       351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            00146899999998887765 5555555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.8e-15  Score=140.34  Aligned_cols=258  Identities=11%  Similarity=0.079  Sum_probs=170.4

Q ss_pred             cceEEEEEcCCCCEEEEeecC------------------------CeEEEEEecCCccccchhhhhhhcccCCCCCCccc
Q 010933           33 DIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYR   88 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (497)
                      +.+.+++++|+|+++++...+                        +.|.+||..+++.                      
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------------------   81 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------------------   81 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence            679999999999999888777                        4689999876643                      


Q ss_pred             cccccc-ccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh-eeccccCCCCCccccccccccc
Q 010933           89 YKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        89 ~~~~~~-~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                       +..+. ++-            .....+++  ++++.++++...++.|++|+..... ...........           
T Consensus        82 -~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-----------  135 (329)
T 3fvz_A           82 -LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-----------  135 (329)
T ss_dssp             -EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------
T ss_pred             -EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------
Confidence             22222 222            46789999  6888888888889999999986542 11100000000           


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE--cCCeEEEEeCc
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINLWNLE  243 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~--~d~~i~iwd~~  243 (497)
                                                               -.-.++......++++| +++++++.  .++.|++|+..
T Consensus       136 -----------------------------------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~  174 (329)
T 3fvz_A          136 -----------------------------------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS  174 (329)
T ss_dssp             -----------------------------------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT
T ss_pred             -----------------------------------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC
Confidence                                                     00023445688999999 78888876  48999999954


Q ss_pred             cCceeeEEeecCCC---ccCCCCCCeEEEEEeCC-CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccc
Q 010933          244 ISDQCFNIVDMKPS---NMDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  319 (497)
Q Consensus       244 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (497)
                        +.....+.....   ...++-.....++++|+ + .++++...++.|++||..+++..    ..+..           
T Consensus       175 --g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~~----~~~~~-----------  236 (329)
T 3fvz_A          175 --GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEFV----REIKH-----------  236 (329)
T ss_dssp             --SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCEE----EEECC-----------
T ss_pred             --CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcEE----EEEec-----------
Confidence              444443211100   00123345799999998 6 77777788999999999877654    33322           


Q ss_pred             ccccccccEEEEeeCCCEEEEE-------e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933          320 TEIIASISDIKFANDGQHLLSR-------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       320 ~~~~~~i~~~~~s~~g~~l~~~-------~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                      ..+...+..++++| +..+++.       . ...|++||+.+ ++.+..+......            ......++++|+
T Consensus       237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------~~~p~~ia~~~d  302 (329)
T 3fvz_A          237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------FDMPHDIVASED  302 (329)
T ss_dssp             TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------CSSEEEEEECTT
T ss_pred             cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------cCCeeEEEECCC
Confidence            11224577888888 3333322       1 25899999986 7777776421110            001268999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q 010933          392 GLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       392 ~~~l~s~~~dg~i~vw~~~~  411 (497)
                      |.++++...+++|++|++..
T Consensus       303 G~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCc
Confidence            98888888999999999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=5.7e-16  Score=147.43  Aligned_cols=276  Identities=12%  Similarity=0.056  Sum_probs=151.1

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...+..++|||||++|+.++.++.|++||+.+++.                       ...+..+.            ..
T Consensus        80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~-----------------------~~~~~~~~------------~~  124 (388)
T 3pe7_A           80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE-----------------------NVVYQVPA------------EW  124 (388)
T ss_dssp             CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECCT------------TE
T ss_pred             CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------eeeeechh------------hc
Confidence            33444678999999999999999999999988753                       12223333            43


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      +....|..++++.+++....++         .......     .                     ...+...........
T Consensus       125 ~~~~~~~~~~dg~~l~~~~~~~---------~~~~~~~-----~---------------------~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A          125 VGYGTWVANSDCTKLVGIEIRR---------EDWVPLT-----D---------------------WKKFHEFYFTKPCCR  169 (388)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEG---------GGCCCCC-----S---------------------HHHHHHHGGGCCCEE
T ss_pred             ccccceeECCCCCeeccccccC---------ccccccc-----c---------------------cchhhhhhccCCcce
Confidence            5455554478888876532110         0000000     0                     000000000001234


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-c------CCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLT  263 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (497)
                      +.+|++...   +....  ..+...+..++|+| +|+.|+.. .      ...|.++|.. ++....        +..+.
T Consensus       170 l~~~d~~~g---~~~~l--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~~--------l~~~~  235 (388)
T 3pe7_A          170 LMRVDLKTG---ESTVI--LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED-GTNMRK--------VKTHA  235 (388)
T ss_dssp             EEEEETTTC---CEEEE--EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT-SCCCEE--------SCCCC
T ss_pred             EEEEECCCC---ceEEe--ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC-CCceEE--------eeeCC
Confidence            555555432   12221  34556788999999 99998876 4      2377788876 333322        22333


Q ss_pred             --CCeEEEEEeCCCCcEEEEEeC-CC----eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          264 --EVITSAEFHPIYCNLLAYSSS-RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       264 --~~i~~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                        ..+..++|+|+| +.|+..+. ++    .|++||+.+++...  +..+..+.          ........+.|+|||+
T Consensus       236 ~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~~~----------~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          236 EGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENRQ--LTSMPACS----------HLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             TTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEEE--EEEECCEE----------EEEECTTSSEEEEEEC
T ss_pred             CCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceEE--EEcCCCce----------eeeecCCCCeEccCCC
Confidence              357789999999 66655443 22    39999999876320  01111100          0000123347999999


Q ss_pred             EEEEE---------e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEE
Q 010933          337 HLLSR---------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR  405 (497)
Q Consensus       337 ~l~~~---------~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~  405 (497)
                      .|+..         . +..|++||+.. ++ +..+..+......+   + .+....+..++|+|||+.|+..+ .+|...
T Consensus       303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~~---~-~~~~~~~~~~~~spDg~~l~~~s~~~g~~~  376 (388)
T 3pe7_A          303 DAPVDVQDDSGYKIENDPFLYVFNMKN-GT-QHRVARHDTSWKVF---E-GDRQVTHPHPSFTPDDKQILFTSDVHGKPA  376 (388)
T ss_dssp             CC------------CCCCEEEEEETTT-TE-EEEEEECCCCCCCB---T-TBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred             cceeEeeeccccccCCCCEEEEEeccC-Cc-eEEeccccCccccc---c-cccccCCCCccCCCCCCEEEEEecCCCcee
Confidence            88753         2 36899999975 44 44555444310000   0 00000014789999999888666 477777


Q ss_pred             EEEcC
Q 010933          406 IFSHG  410 (497)
Q Consensus       406 vw~~~  410 (497)
                      ||.++
T Consensus       377 l~~~~  381 (388)
T 3pe7_A          377 LYLAT  381 (388)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=1.5e-14  Score=135.79  Aligned_cols=302  Identities=10%  Similarity=0.022  Sum_probs=187.6

Q ss_pred             CCCEEEEee------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           43 TGDYLAVGD------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        43 ~g~~lasg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      +++++.+..      .|+.|.+||..+++.                       +..+..+.            .+  .++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-----------------------~~~i~~g~------------~p--~i~   56 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF-----------------------LGMVPTAF------------NG--HVQ   56 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCE-----------------------EEEEECCE------------EE--EEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeE-----------------------EEEecCCC------------CC--ceE
Confidence            556665543      478999999887643                       34454444            44  788


Q ss_pred             EEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          117 WCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       117 ~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      |  +||++++++++          .++.|.+||..+.+...........                               
T Consensus        57 ~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-------------------------------  103 (361)
T 2oiz_A           57 V--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-------------------------------  103 (361)
T ss_dssp             E--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-------------------------------
T ss_pred             E--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-------------------------------
Confidence            8  78999999886          3678999998766543321100000                               


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEE-eecCCCccCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNMDDL  262 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~  262 (497)
                                              ..+......++++|+|++|+++ .  ++.|.+||+. .++.... +.        .
T Consensus       104 ------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~--------~  150 (361)
T 2oiz_A          104 ------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTA--------A  150 (361)
T ss_dssp             ------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGG--------G
T ss_pred             ------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEec--------C
Confidence                                    1123456679999999999887 3  6899999999 4555443 31        1


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                       .....+.+.|++...+++.+.||.+.+|++.. ++...    ...  .     ...+.....+ ..+.+++++..++..
T Consensus       151 -~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~----~~~--~-----~~~~~~~~~~-~~~~~~~~g~~~~~~  217 (361)
T 2oiz_A          151 -AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS----QSR--S-----KQMFSVKDDP-IFIAPALDKDKAHFV  217 (361)
T ss_dssp             -TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE----EEE--C-----CCCSCTTTSC-BCSCCEECSSEEEEE
T ss_pred             -CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee----ecc--c-----cceEcCCCCc-eEEEecccCCEEEEE
Confidence             11233567787656788889999999999865 33220    000  0     0001111112 233446777766665


Q ss_pred             ec-CeEEEEecCCCCc-eeeeeeecc------cccccccccCCCCCccceeEEEEcCCCCEEEEEeC-----------CC
Q 010933          342 DY-MNLKLWDIRMDST-PVATFKIHE------HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----------SN  402 (497)
Q Consensus       342 ~~-~~i~lwd~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-----------dg  402 (497)
                      +. +.+.++|+..+.. ....+....      ...+           .....++|+|+++.++++..           ++
T Consensus       218 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-----------~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~  286 (361)
T 2oiz_A          218 SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP-----------GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA  286 (361)
T ss_dssp             BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE-----------CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred             eCCCeEEEEEecCCCceecccccccCcccccccccc-----------CCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence            44 8999999864221 112221110      0000           00023899999888877643           35


Q ss_pred             cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC--CC--CCcccccccCCCeEEEEE
Q 010933          403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SS--GHHELSYNLSSKLLHLAW  477 (497)
Q Consensus       403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~--~~--~~~~~~~~~~~~i~~l~~  477 (497)
                      .|.+||+.+++. ...+..+.  ...++++|  +++.     |++++. +. .+|.  ++  +..............+++
T Consensus       287 ~v~viD~~t~~~-v~~i~~~~--p~~ia~sp--dg~~-----l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          287 EIWVMDTKTKQR-VARIPGRD--ALSMTIDQ--QRNL-----MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             EEEEEETTTTEE-EEEEECTT--CCEEEEET--TTTE-----EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             eEEEEECCCCcE-EEEEecCC--eeEEEECC--CCCE-----EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence            899999999854 47777776  89999999  6666     666666 66 9993  33  333333456677789999


Q ss_pred             ecCCC
Q 010933          478 HPTTN  482 (497)
Q Consensus       478 ~p~~~  482 (497)
                      +|+|.
T Consensus       356 ~p~G~  360 (361)
T 2oiz_A          356 HPVGG  360 (361)
T ss_dssp             CCCSC
T ss_pred             cCCCC
Confidence            99985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=5.8e-15  Score=138.52  Aligned_cols=275  Identities=9%  Similarity=0.022  Sum_probs=170.3

Q ss_pred             EEEEcCCCCEEEEeec----------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           37 AIEFDKTGDYLAVGDR----------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        37 ~i~~sp~g~~lasg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      .++|+|||++|++++.          ++.|.+||..+.+.                       +.++......      .
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-----------------------~~~i~~~~~~------~  104 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-----------------------EKEISLPPKR------V  104 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-----------------------EEEEEECTTB------C
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-----------------------EEEEEcCccc------c
Confidence            8999999999998863          67899999877543                       2222211000      0


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeC--CccEEEeecCchheecc-ccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      ........+++  +|++++|+++..  ++.|.+||+.+++.... ..                                 
T Consensus       105 ~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~---------------------------------  149 (361)
T 2oiz_A          105 QGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA---------------------------------  149 (361)
T ss_dssp             CBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG---------------------------------
T ss_pred             ccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec---------------------------------
Confidence            00033567888  789999998863  68999999988764321 10                                 


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  261 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  261 (497)
                                                   . .....+.+.|++ ..+++. .||.+.+|+....++........ ..+..
T Consensus       150 -----------------------------~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~-~~~~~  198 (361)
T 2oiz_A          150 -----------------------------A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK-QMFSV  198 (361)
T ss_dssp             -----------------------------G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC-CCSCT
T ss_pred             -----------------------------C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc-ceEcC
Confidence                                         0 011224455654 445555 78888888876434433211100 01222


Q ss_pred             CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      ...++ .+.+++++ ..++..+.++.+.++|+.......  ...+........ ...+  .......++|+|+++.++++
T Consensus       199 ~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~-~~~~--~p~g~~~~a~~~dg~~lyv~  271 (361)
T 2oiz_A          199 KDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDEDK-AKNW--VPGGYNLVGLHRASGRMYVF  271 (361)
T ss_dssp             TTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHHHH-HTTC--EECCSSCEEEETTTTEEEEE
T ss_pred             CCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcccc-cccc--ccCCeeEEEEecCCCeEEEE
Confidence            22222 33346777 677778889999999997553210  011110000000 0000  00123347899998877765


Q ss_pred             -e-----------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          342 -D-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       342 -~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                       .           .+.|.+||+.+ .+.+.++..+. .                .+++|+|||++|++++. +.|.+||.
T Consensus       272 ~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          272 MHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             EESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             EccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCEEEEeCC-CeEEEEEC
Confidence             3           14899999987 88888888776 3                58999999999998887 99999999


Q ss_pred             CCC--CcceEEEeccCcceeeeEeec
Q 010933          410 GVG--SAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       410 ~~~--~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      .++  +.+ ..+..+....+.++++|
T Consensus       333 ~t~~l~~~-~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          333 SQPEPKLL-RTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             SSSSCEEE-EEETTSCSSEEEEEECC
T ss_pred             CCCcceee-EEeccCCCCcEEEEecC
Confidence            987  444 55555666667888887

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=3.9e-15  Score=138.51  Aligned_cols=244  Identities=13%  Similarity=0.108  Sum_probs=161.7

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ..|.+++|+|++..++..+.++.++.|...                          ....+..+.            ..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~------------~~~   47 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------------------PWLEISKKG------------LQL   47 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------------------EEEEEESSC------------CCE
T ss_pred             cccceeeecCCccceeEEeecccCcccccc--------------------------eeEEEeccC------------ccc
Confidence            457888999998888777778888988321                          133444555            567


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .+++|  ++++++++++..++.|.+||..+++.....                                           
T Consensus        48 ~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-------------------------------------------   82 (333)
T 2dg1_A           48 EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF-------------------------------------------   82 (333)
T ss_dssp             EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred             cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence            89999  688887778888999999998876633210                                           


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                        ..+...+.+++++++|+++++. .+    +.|.+||.+ ++.....+.     ...+...+.
T Consensus        83 ------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----~~~~~~~~~  138 (333)
T 2dg1_A           83 ------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLSTAYCID  138 (333)
T ss_dssp             ------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSSCCCEE
T ss_pred             ------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEc-----cCccCCccc
Confidence                              1334578999999999988887 55    689999988 443332211     112446789


Q ss_pred             EEEEeCCCCcEEEEEeC------CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          268 SAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      .++++|+| .++++...      .+.|..+|..+++..    .....              ......++|+|+|++|+.+
T Consensus       139 ~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--------------~~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          139 DMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             EEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSEEEEE
T ss_pred             ceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE----EeecC--------------CCcccceEECCCCCEEEEE
Confidence            99999999 77776553      355666666544321    11111              1346889999999876655


Q ss_pred             e--cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          342 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       342 ~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      .  ++.|.+||+...+..+..+......     ...   .......++++++|+++++...++.|.+||.+
T Consensus       200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~---~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          200 ETTANRLHRIALEDDGVTIQPFGATIPY-----YFT---GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC---SSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eCCCCeEEEEEecCCCcCcccccceEEE-----ecC---CCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            3  3899999996434433322100000     000   00011579999999988888888999999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=4.3e-15  Score=151.82  Aligned_cols=210  Identities=13%  Similarity=0.018  Sum_probs=132.7

Q ss_pred             CCCCCE-EEEE--cCCeEEEEeCcc-C-ceeeEEeecCCCccCC-----CCCCeEEEEEeCCCCcEEEEEeCC-------
Q 010933          223 NSDCET-FVSA--DDLRINLWNLEI-S-DQCFNIVDMKPSNMDD-----LTEVITSAEFHPIYCNLLAYSSSR-------  285 (497)
Q Consensus       223 ~~~~~~-l~~~--~d~~i~iwd~~~-~-~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d-------  285 (497)
                      ||||+. |+.+  .+..|+++++.. + +....        +..     |...+..++|+|+| +.|++++.+       
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--------l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--------LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--------CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--------ccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence            499998 7776  356666666540 1 32222        233     56778899999999 889888876       


Q ss_pred             ---CeEEEEEccC------Ccccccccceec-ccccccCCccccccccccccEEEEeeCCCEEEEEe-c--------CeE
Q 010933          286 ---GFVRLVDMRQ------SALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNL  346 (497)
Q Consensus       286 ---g~i~v~d~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--------~~i  346 (497)
                         ..|++||+.+      ++.     +.+. .             +...+..++|||||++|+.++ +        ..|
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i  219 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSAV-----RELSDD-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL  219 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGGS-----EESSCS-------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred             CceeEEEEEECCCCccccCCce-----eEEEec-------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence               5899999987      432     2221 1             124577899999999998764 3        379


Q ss_pred             EEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCcceEEEec
Q 010933          347 KLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       347 ~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~vw~~~~~~~~~~~~~~  421 (497)
                      ++||+...+   +.......+...+               ..+.|+|||+++++++.++  .|++||+.+++.  ..+..
T Consensus       220 ~~~d~~~~g~~~~~~~l~~~~~~~~---------------~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~~l~~  282 (662)
T 3azo_A          220 KTARVTEDGRFADTRTLLGGPEEAI---------------AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--TQLCR  282 (662)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTBCE---------------EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--EESSC
T ss_pred             EEEEECCCCcccccEEeCCCCCceE---------------cceEECCCCeEEEEECCCCCeEEEEEECCCCce--eeccc
Confidence            999997324   3333333333322               5899999999888888888  566666655532  23332


Q ss_pred             cCcc---------eeeeEeecCCCcccccccceeEeeccCc-eec--CC-CCCcccccccCCCeEEEEEecCCCEEE
Q 010933          422 GKNE---------NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIA  485 (497)
Q Consensus       422 ~~~~---------v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~-~~~~~~~~~~~~~i~~l~~~p~~~~la  485 (497)
                      +...         +..+++++  ++++     ++++.. +. ++|  .. ++....+..+...+..+ |+++++.++
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~--~~~~-----~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~  350 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLA--NGLI-----AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAV  350 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECT--TSCE-----EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEE
T ss_pred             ccccccCccccccCceEeEeC--CCEE-----EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEE
Confidence            3222         34566665  4555     777777 77 999  32 23344445556667666 255565444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=8.2e-14  Score=126.46  Aligned_cols=203  Identities=9%  Similarity=0.096  Sum_probs=139.0

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..+.++++  ++++.++++...++.|.+|+... +.........                                    
T Consensus        30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~------------------------------------   70 (286)
T 1q7f_A           30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG------------------------------------   70 (286)
T ss_dssp             SCEEEEEE--CTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS------------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEECCCCEEEEECCCC-cEEEEecccC------------------------------------
Confidence            56889999  67888888888899999999763 3221100000                                    


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEe-CCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                         ...++...+..+++ .++++++++. . ++.|.+||..  ++....+      ...+...+
T Consensus        71 -------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~------~~~~~~~~  123 (286)
T 1q7f_A           71 -------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKF------GATILQHP  123 (286)
T ss_dssp             -------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEE------CTTTCSCE
T ss_pred             -------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEe------cCccCCCc
Confidence                               00244556889999 5788777777 4 8999999954  4444432      12344578


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      ..++++|+| +++++...++.|.+||.. ++..    ..+..           ..+...+..++++|+|+++++.. ++.
T Consensus       124 ~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~  186 (286)
T 1q7f_A          124 RGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHC  186 (286)
T ss_dssp             EEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             eEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence            999999999 888877788999999965 3322    22221           01124578999999998777765 499


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-cEEEEEcC
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHG  410 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~vw~~~  410 (497)
                      |++||..  ++.+..+..+....             ....++++++|+++++...++ .|.+|+..
T Consensus       187 i~~~~~~--g~~~~~~~~~g~~~-------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          187 VKVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             EEEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             EEEEcCC--CCEEEEEccCCccC-------------CCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            9999974  56666664332100             115899999999888888886 99999954

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=3.3e-14  Score=129.81  Aligned_cols=241  Identities=8%  Similarity=-0.014  Sum_probs=165.5

Q ss_pred             CCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        31 h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +.....+++|+|+|+ +++++..++.|..|+..++ .                        ..+..+.            
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~------------   68 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS------------   68 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC------------
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC------------
Confidence            456778999999998 7788888999999998764 2                        2333444            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..+.++++  ++++.++++...++.|.+||..+++...+...                                      
T Consensus        69 ~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~--------------------------------------  108 (296)
T 3e5z_A           69 HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADS--------------------------------------  108 (296)
T ss_dssp             SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECE--------------------------------------
T ss_pred             CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeec--------------------------------------
Confidence            66899999  68888877777778999999877664332100                                      


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCccCceeeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNI  251 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~~~~~  251 (497)
                                         ........+..++++|+|+++++    | .             .+.|..++..  +.... 
T Consensus       109 -------------------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~-  166 (296)
T 3e5z_A          109 -------------------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSA-  166 (296)
T ss_dssp             -------------------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEE-
T ss_pred             -------------------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEE-
Confidence                               00111235678999999998887    3 1             2455555544  33222 


Q ss_pred             eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc-CCcccccccceecccccccCCccccccccccccEEE
Q 010933          252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  330 (497)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (497)
                             +..+......++|+|++ +.+++.+.++.|.+||+. .++... ..+.+..             +...+..++
T Consensus       167 -------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~-~~~~~~~-------------~~~~p~~i~  224 (296)
T 3e5z_A          167 -------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEY-QGVHFTV-------------EPGKTDGLR  224 (296)
T ss_dssp             -------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEE-EEEEECC-------------SSSCCCSEE
T ss_pred             -------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcC-CCeEeeC-------------CCCCCCeEE
Confidence                   22345567899999999 777777778999999997 443200 0122211             124567899


Q ss_pred             EeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE-cCCCCEEEEEeCCCcEEEEEc
Q 010933          331 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       331 ~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      ++++|+++++. ++.|.+||..  ++.+..+..+.. +               .+++| +|+++.|++++.+ .+.-++.
T Consensus       225 ~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~-~l~~~~~  284 (296)
T 3e5z_A          225 VDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVST-EFWSIET  284 (296)
T ss_dssp             EBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred             ECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence            99999977777 8899999985  677777776654 2               57899 5899999988876 3444555


Q ss_pred             CCC
Q 010933          410 GVG  412 (497)
Q Consensus       410 ~~~  412 (497)
                      ++.
T Consensus       285 ~~~  287 (296)
T 3e5z_A          285 NVR  287 (296)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=3.6e-14  Score=145.96  Aligned_cols=250  Identities=10%  Similarity=0.078  Sum_probs=159.0

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCC-----eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      |...+..++|||||++||.+..++     .|++||+.+++.                       ..... ..        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~-----------------------~~~~~-~~--------  170 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-----------------------LPDVL-ER--------  170 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE-----------------------EEEEE-EE--------
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-----------------------Ccccc-cC--------
Confidence            444688999999999999876543     899999988753                       11111 11        


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCcc----------------EEEeecCchheeccccCCCCCccccccccccccCc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                          ..+..++|  +||++.|+.++.++.                |++|++.+++...                      
T Consensus       171 ----~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~----------------------  222 (710)
T 2xdw_A          171 ----VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED----------------------  222 (710)
T ss_dssp             ----ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC----------------------
T ss_pred             ----cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc----------------------
Confidence                22677999  789999999987765                5666654433110                      


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCc
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLE  243 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-----d~~i~iwd~~  243 (497)
                                                        ..+... ..|...+..+.|+|+|+.|+.+ .     +..|++||+.
T Consensus       223 ----------------------------------~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          223 ----------------------------------ILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             ----------------------------------EEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             ----------------------------------eEEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence                                              011110 2345567899999999999875 4     5789999998


Q ss_pred             c------CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC----CeEEEEEccCCcccccccceeccccccc
Q 010933          244 I------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESH  313 (497)
Q Consensus       244 ~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~~~~~~  313 (497)
                      .      .......       +..+...+.. .|+|+| ..|+..+..    +.|.+||+.++... ........ ..  
T Consensus       268 ~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~-~~--  334 (710)
T 2xdw_A          268 QESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPE-HE--  334 (710)
T ss_dssp             GSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECC-CS--
T ss_pred             ccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCC-CC--
Confidence            4      2212222       3344445544 488888 666665543    36999999876320 00011111 00  


Q ss_pred             CCccccccccccccEEEEeeCCCEEEEEe-cC--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933          314 GSKSFFTEIIASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  390 (497)
Q Consensus       314 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  390 (497)
                               ...+..++|++++.++++.. ++  .|++|++.+ ++.+..+..+...+               ..++++|
T Consensus       335 ---------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~~~~s~  389 (710)
T 2xdw_A          335 ---------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VGYSGQK  389 (710)
T ss_dssp             ---------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EEEECCT
T ss_pred             ---------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EEEecCC
Confidence                     12577888987777777764 45  566777754 66666676654322               5788999


Q ss_pred             CCCEEEEE-e---CCCcEEEEEcCCCC
Q 010933          391 DGLHFATG-S---YSNLLRIFSHGVGS  413 (497)
Q Consensus       391 ~~~~l~s~-~---~dg~i~vw~~~~~~  413 (497)
                      +++.|+.. +   ..+.|++||+.+++
T Consensus       390 d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          390 KDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            98766633 2   35789999998875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=3.1e-15  Score=142.61  Aligned_cols=219  Identities=13%  Similarity=0.021  Sum_probs=129.9

Q ss_pred             EEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE-------------------EEEeCCCCcE
Q 010933          219 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-------------------AEFHPIYCNL  278 (497)
Q Consensus       219 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~  278 (497)
                      .+.|+|+|+.|+.+ .++.|++||+. +++...+..       .+......                   +.|+|++ +.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~-~~~~~~~~~-------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~  155 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLE-TLEEQVIYT-------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SW  155 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECC-CCCcEEEEe-------cccccCCCCCEEEeccCCccccccccccccCCCC-cc
Confidence            36799999999887 88899999998 444443321       11121111                   3456776 55


Q ss_pred             EEEE-----eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEec-------Ce
Q 010933          279 LAYS-----SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-------MN  345 (497)
Q Consensus       279 l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-------~~  345 (497)
                      ++..     ..+..|.+||+.+++..    .....              ...+..+.|+| +++.|+...+       ..
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~--------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (396)
T 3c5m_A          156 EKFAEFYHTNPTCRLIKVDIETGELE----VIHQD--------------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR  217 (396)
T ss_dssp             HHHHHHHHTCCCEEEEEEETTTCCEE----EEEEE--------------SSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred             eeeeeeccCCCcceEEEEECCCCcEE----eeccC--------------CcccccceECCCCCCEEEEEecCCCCCCCce
Confidence            5443     35678999999876532    22211              24678899999 7887766532       36


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCcceEEEe
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~  420 (497)
                      |.+||+.. ++ ...+..+...             ..+..++|+|||++|+.++.+     +.|++||+.+++..  .+.
T Consensus       218 l~~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~  280 (396)
T 3c5m_A          218 MWLVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE--EVM  280 (396)
T ss_dssp             CEEEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE--EEE
T ss_pred             EEEEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE--Eee
Confidence            88888763 33 2222222111             012578999999988877654     45999999887543  222


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeec----------------cCc-eecCC-CCCcccccccCC-----------C
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLY----------------RQA-HENSS-SGHHELSYNLSS-----------K  471 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------------d~~-~iw~~-~~~~~~~~~~~~-----------~  471 (497)
                      .... .. +.+++. +++.     ++.++.                +.. .+|.. .+....+..+..           .
T Consensus       281 ~~~~-~~-~~~s~~-dg~~-----l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~  352 (396)
T 3c5m_A          281 VMPP-CS-HLMSNF-DGSL-----MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQIT  352 (396)
T ss_dssp             ECCS-EE-EEEECS-SSSE-----EEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTT
T ss_pred             eCCC-CC-CCccCC-CCce-----EEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCC
Confidence            1111 22 677762 4444     554431                122 55532 222233333333           2


Q ss_pred             eEEEEEecCCCEEEEEeC
Q 010933          472 LLHLAWHPTTNLIACANG  489 (497)
Q Consensus       472 i~~l~~~p~~~~la~~~~  489 (497)
                      +.+++|+|||+.|+.++.
T Consensus       353 ~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          353 HPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             CCCCEECTTSSEEEEEEC
T ss_pred             CCCceEccCCCeEEEEec
Confidence            567899999999988773

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=1.6e-14  Score=148.05  Aligned_cols=248  Identities=10%  Similarity=-0.019  Sum_probs=154.1

Q ss_pred             CCcceEEEEEcCCCCEEE-----EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLA-----VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~la-----sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      |...+..++|||||++||     .|+.+..|++||+.+++.                       +.  ..+...      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~-----------------------~~--~~~~~~------  167 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW-----------------------SK--VDVIEG------  167 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB-----------------------CS--SCCBSC------
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC-----------------------cC--CcccCc------
Confidence            455799999999999999     445557899999998753                       10  111100      


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCcc-------------EEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  172 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (497)
                          .....++|  +|||+.|+.++.|..             |++|++.++....                         
T Consensus       168 ----~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-------------------------  216 (695)
T 2bkl_A          168 ----GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-------------------------  216 (695)
T ss_dssp             ----CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-------------------------
T ss_pred             ----ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-------------------------
Confidence                11267899  789999999988765             6666665544110                         


Q ss_pred             CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCccCce
Q 010933          173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQ  247 (497)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~----~i~iwd~~~~~~  247 (497)
                                                     ..+... ..|...+..+.|+|+|+.|+.+ .++    .|++|+.. .+.
T Consensus       217 -------------------------------~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~~  263 (695)
T 2bkl_A          217 -------------------------------TVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-EKD  263 (695)
T ss_dssp             -------------------------------EEEECC-CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-CSS
T ss_pred             -------------------------------eEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-CCc
Confidence                                           111111 3455678899999999999876 544    66677654 233


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC----CCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      ...        +..+...+....+ ++| . |+..+.    ++.|.+||+.++... .....+..+            ..
T Consensus       264 ~~~--------l~~~~~~~~~~~~-~~g-~-l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~------------~~  319 (695)
T 2bkl_A          264 FRL--------LVKGVGAKYEVHA-WKD-R-FYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPED------------SS  319 (695)
T ss_dssp             CEE--------EEECSSCCEEEEE-ETT-E-EEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCC------------SS
T ss_pred             eEE--------eecCCCceEEEEe-cCC-c-EEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCC------------CC
Confidence            332        2234445566666 677 5 444443    588999999776421 000222210            02


Q ss_pred             ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec-ccccccccccCCCCCccceeEEEEcCCCCEEEEE---
Q 010933          324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG---  398 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~---  398 (497)
                      ..+..++++ ++.++++.. ++..+||.+...++....+..+ ...+               ..++++|+++.|+..   
T Consensus       320 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          320 ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSEEEEEEEE
T ss_pred             CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCEEEEEEcC
Confidence            356778887 666666664 5777777665335555555544 2211               467888998877632   


Q ss_pred             -eCCCcEEEEEcCCCC
Q 010933          399 -SYSNLLRIFSHGVGS  413 (497)
Q Consensus       399 -~~dg~i~vw~~~~~~  413 (497)
                       ...+.|++||+.+++
T Consensus       384 ~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          384 FTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TTEEEEEEEEETTTCC
T ss_pred             CCCCCEEEEEECCCCc
Confidence             235789999998875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=1.8e-13  Score=127.89  Aligned_cols=256  Identities=12%  Similarity=0.070  Sum_probs=161.7

Q ss_pred             ccCCcceEEEEEcCCCCEEEEee---------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE   99 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~   99 (497)
                      +.....+..+++  ||+++|...         .++.|.+||+.+++.                        ..+      
T Consensus        11 l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~------------------------~~l------   58 (347)
T 2gop_A           11 FAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR------------------------RFI------   58 (347)
T ss_dssp             CCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE------------------------EEE------
T ss_pred             ceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce------------------------EEc------
Confidence            334567888888  999988753         256899999887642                        111      


Q ss_pred             cccccccccccceeEEEEEecCCCCEEEEEeCC---c--cEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933          100 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  174 (497)
Q Consensus       100 ~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (497)
                                ..+..++|  +|||++|+.++.+   +  .|.+|++.+++...+                          
T Consensus        59 ----------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l--------------------------  100 (347)
T 2gop_A           59 ----------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI--------------------------  100 (347)
T ss_dssp             ----------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE--------------------------
T ss_pred             ----------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEE--------------------------
Confidence                      22678899  7899999987643   3  366667766553221                          


Q ss_pred             CCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-------------------
Q 010933          175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-------------------  234 (497)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-------------------  234 (497)
                                                          ..+.. +..++|+|+|+.|+.+ .+                   
T Consensus       101 ------------------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A          101 ------------------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             ------------------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred             ------------------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence                                                11122 8899999999988876 43                   


Q ss_pred             --------CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC-------eEEEEEccCCccc
Q 010933          235 --------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALC  299 (497)
Q Consensus       235 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~  299 (497)
                              ..|++||+. +++....       +.. . .+..++|+|+|  +++++..++       ...+|.+.+++. 
T Consensus       144 ~~~~~~~~~~l~~~d~~-~~~~~~~-------l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-  210 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTE-SEEVIEE-------FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-  210 (347)
T ss_dssp             ------CEEEEEEEETT-TTEEEEE-------EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-
T ss_pred             cccccCccceEEEEECC-CCeEEee-------ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-
Confidence                    578899988 4544222       122 2 67889999997  566665442       344554443321 


Q ss_pred             ccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c--------CeEEEEecCCCCceeeeeeeccccccc
Q 010933          300 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--------~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                          +.+..             + ..+..  ++|+|++|+.++ +        ..|.+||  . ++.......+...+  
T Consensus       211 ----~~l~~-------------~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~--  265 (347)
T 2gop_A          211 ----EKMFE-------------K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGV--  265 (347)
T ss_dssp             ----EEEEE-------------E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEE--
T ss_pred             ----EEecc-------------C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCccc--
Confidence                22221             1 22333  399999887754 2        3677777  3 55444333333322  


Q ss_pred             ccccCCCCCccceeE-EEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEee
Q 010933          371 LCDLYNNDSIFDKFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  449 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~-~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  449 (497)
                                   .. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.+++    .+     +++++
T Consensus       266 -------------~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~----~~-----~~~~~  318 (347)
T 2gop_A          266 -------------GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE----IV-----VYLKE  318 (347)
T ss_dssp             -------------EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS----SE-----EEEEE
T ss_pred             -------------CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC----cE-----EEEEc
Confidence                         44 8899 88 89999999999999 8854 33 44445577888888876    23     45555


Q ss_pred             ccCc--eec
Q 010933          450 YRQA--HEN  456 (497)
Q Consensus       450 ~d~~--~iw  456 (497)
                      .++.  .+|
T Consensus       319 ~~~~~~~l~  327 (347)
T 2gop_A          319 TATRLRELF  327 (347)
T ss_dssp             CSSSCCEEE
T ss_pred             CCCChHHhe
Confidence            5554  677

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=1.9e-13  Score=126.74  Aligned_cols=244  Identities=9%  Similarity=0.038  Sum_probs=147.2

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.+.+|++  +++|+++++...++.+.++.............                                 ....+
T Consensus        24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~   68 (329)
T 3fvz_A           24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGL---------------------------------GPIEE   68 (329)
T ss_dssp             SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGG---------------------------------CSCCS
T ss_pred             CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeeccccc---------------------------------ccccC
Confidence            67999999  78898888888887655544332211100000                                 00124


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC--CCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~i  266 (497)
                      +.+.+||....   +.+..+..++......++++++|+++++. .++.|++||.......+..+...  +..-..+....
T Consensus        69 ~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P  145 (329)
T 3fvz_A           69 DTILVIDPNNA---EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP  145 (329)
T ss_dssp             CCEEEECTTTC---CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred             CcEEEEECCCC---eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence            56777776532   23333323555678899999999988888 89999999987221133322100  00013445578


Q ss_pred             EEEEEeC-CCCcEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEec
Q 010933          267 TSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY  343 (497)
Q Consensus       267 ~~~~~~~-~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~  343 (497)
                      ..++++| ++ .++++.+ .++.|++||. +++..    ..+.......   ....++......++++|+ +.++++...
T Consensus       146 ~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~---~~~~~~~~~p~gia~d~~~g~l~v~d~~  216 (329)
T 3fvz_A          146 TDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS---SPRPGQFSVPHSLALVPHLDQLCVADRE  216 (329)
T ss_dssp             EEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS---SCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred             cEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC---CCCCcccCCCcEEEEECCCCEEEEEECC
Confidence            9999999 67 7777776 6999999994 45433    3332211000   000112234789999998 555555543


Q ss_pred             -CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC------CCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          344 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       344 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                       +.|++||..+ ++.+..+.......          .   ...++|+|      +++..++...+..|++|+..+++.
T Consensus       217 ~~~I~~~~~~~-G~~~~~~~~~~~~~----------~---~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~  280 (329)
T 3fvz_A          217 NGRIQCFKTDT-KEFVREIKHASFGR----------N---VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI  280 (329)
T ss_dssp             TTEEEEEETTT-CCEEEEECCTTTTT----------C---EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE
T ss_pred             CCEEEEEECCC-CcEEEEEeccccCC----------C---cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE
Confidence             8999999975 78777775432211          1   15788888      333333334456899999888743

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.62  E-value=2.7e-12  Score=126.61  Aligned_cols=318  Identities=9%  Similarity=0.001  Sum_probs=196.6

Q ss_pred             cCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEec
Q 010933           41 DKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  120 (497)
Q Consensus        41 sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s  120 (497)
                      +|.+.++++...++.|.++|..+++.                       +.++...             ..+..+.|  +
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v-----------------------~~~i~~g-------------~~p~~v~~--S  205 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRL--S  205 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEE--C
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeE-----------------------EEEEeCC-------------CCccceEE--C
Confidence            34555667777889999999988753                       3344322             33668888  7


Q ss_pred             CCCCEEEEEeCCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeec
Q 010933          121 PNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  198 (497)
Q Consensus       121 ~~~~~l~s~s~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (497)
                      ||++++++++.|+.|.+||+.  +++...                                                   
T Consensus       206 pDGr~lyv~~~dg~V~viD~~~~t~~~v~---------------------------------------------------  234 (567)
T 1qks_A          206 ASGRYLFVIGRDGKVNMIDLWMKEPTTVA---------------------------------------------------  234 (567)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEE---------------------------------------------------
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCCcEeE---------------------------------------------------
Confidence            899999999999999999985  433221                                                   


Q ss_pred             CCccceeeeeeccCCCCCeeEEEeC----CCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCC---C-CCCeEE
Q 010933          199 NSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD---L-TEVITS  268 (497)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~-~~~i~~  268 (497)
                               .+ .. ......++|+    |+|++++++  .++.|.++|.. ..+.++.+........+   | ...+..
T Consensus       235 ---------~i-~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          235 ---------EI-KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             ---------EE-EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             ---------EE-ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEE
Confidence                     11 11 1235688999    699998876  78999999988 55666665433211111   2 236788


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i  346 (497)
                      +..+++++.+++....+|.|.++|....+...  ...+..              ......+.|+|+|++++++.  .+.|
T Consensus       303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~sn~V  366 (567)
T 1qks_A          303 ILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANARNKL  366 (567)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCCCCeE
Confidence            88999875666667778999999987643210  011111              12356789999999988764  3999


Q ss_pred             EEEecCCCCceeeeeee-cccccccccccCCCCCccceeEEE-EcCCCCEE-EEEe-CCCcEEEEEcCCCC------cce
Q 010933          347 KLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHF-ATGS-YSNLLRIFSHGVGS------AGG  416 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l-~s~~-~dg~i~vw~~~~~~------~~~  416 (497)
                      .++|+.+ ++.+..+.. ...+-+          .   .... ++|++..+ +++. .++.|.++|..+.+      .+.
T Consensus       367 ~ViD~~t-~kl~~~i~vgg~~Php----------g---~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv  432 (567)
T 1qks_A          367 VVIDTKE-GKLVAIEDTGGQTPHP----------G---RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL  432 (567)
T ss_dssp             EEEETTT-TEEEEEEECSSSSBCC----------T---TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             EEEECCC-CcEEEEEeccCcCCCC----------c---cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence            9999987 777766654 221100          0   1233 57875544 4543 46899999998732      223


Q ss_pred             EEEeccCcceeeeEeecCCCcccccccceeEeec-------cCc-eecCCCCC-----cc--ccc---------ccCCCe
Q 010933          417 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY-------RQA-HENSSSGH-----HE--LSY---------NLSSKL  472 (497)
Q Consensus       417 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-------d~~-~iw~~~~~-----~~--~~~---------~~~~~i  472 (497)
                      ..+........-+..+|  +++.     +.....       .+. .++.....     ..  ...         ...+.+
T Consensus       433 ~~i~~~g~g~~~i~~~p--~~~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  505 (567)
T 1qks_A          433 DSFPALGGGSLFIKTHP--NSQY-----LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV  505 (567)
T ss_dssp             EEEECSCSCCCCEECCT--TCSE-----EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred             EEEecCCCCCEEEEeCC--CCCe-----EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence            45544332222344455  4433     333221       112 44511111     10  111         124578


Q ss_pred             EEEEEecCCCEEEEEe------CCceEEEe
Q 010933          473 LHLAWHPTTNLIACAN------GNSLFFHY  496 (497)
Q Consensus       473 ~~l~~~p~~~~la~~~------~~~~~i~~  496 (497)
                      .++.|+|+|+.+.++.      ++.+.|+.
T Consensus       506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          506 VQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            8999999999876652      46677764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=1.9e-13  Score=122.85  Aligned_cols=239  Identities=8%  Similarity=-0.019  Sum_probs=157.4

Q ss_pred             ceEEEEEcCCCCEEE-EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        34 ~I~~i~~sp~g~~la-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ...+++++|+|++++ +...++.|.+|+..+...                     ...  ...+.            ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~---------------------~~~--~~~~~------------~~p   69 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------TVL--PFNGL------------YQP   69 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------------------------EEC--CCCSC------------CSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc---------------------ceE--eeCCc------------CCc
Confidence            778999999999777 546788999998765421                     000  01122            447


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .++++  ++++..+++.. ++.|.+|+..+.......                                           
T Consensus        70 ~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~-------------------------------------------  103 (270)
T 1rwi_B           70 QGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVLP-------------------------------------------  103 (270)
T ss_dssp             CCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEECC-------------------------------------------
T ss_pred             ceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeeee-------------------------------------------
Confidence            78999  67777655555 889999997654422110                                           


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                                        ......+..+++.++|+++++. .++.|.+|+... ......       .......+..+++
T Consensus       104 ------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~-------~~~~~~~p~~i~~  157 (270)
T 1rwi_B          104 ------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVL-------PFTGLNDPDGVAV  157 (270)
T ss_dssp             ------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEEC-------CCCSCCSCCCEEE
T ss_pred             ------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEee-------ccccCCCceeEEE
Confidence                              1222457889999999988887 789999997652 221111       1122345788999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEe
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD  350 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd  350 (497)
                      +++| +++++...++.|.+||.......    .....             +...+..++++++|.++++.. ++.|.+|+
T Consensus       158 ~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          158 DNSG-NVYVTDTDNNRVVKLEAESNNQV----VLPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             CTTC-CEEEEEGGGTEEEEECTTTCCEE----ECCCS-------------SCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             eCCC-CEEEEECCCCEEEEEecCCCceE----eeccc-------------CCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence            9999 77777777889999998765422    11000             113578899999997666664 48999999


Q ss_pred             cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      ... .........+...               ..+++++++|+++++...+++|+++++...+
T Consensus       220 ~~~-~~~~~~~~~~~~~---------------p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          220 AGS-TTSTVLPFTGLNT---------------PLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TTC-SCCEECCCCSCSC---------------EEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCC-CcceeeccCCCCC---------------ceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            864 3222111111111               2589999999988888999999999988653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=8.6e-12  Score=113.67  Aligned_cols=239  Identities=9%  Similarity=0.017  Sum_probs=161.1

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      +...+.+++++++|++.++...++.|.+||.. ++.                     ... .+..+.            .
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---------------------~~~-~~~~~~------------~   57 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---------------------TEY-PLPTPD------------A   57 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---------------------EEE-ECSSTT------------C
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---------------------EEe-cCCccc------------C
Confidence            34688999999999988776667899999977 432                     100 111222            5


Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .+.++++  ++++..+++...++.|..|+.. ++....                                          
T Consensus        58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~------------------------------------------   92 (299)
T 2z2n_A           58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY------------------------------------------   92 (299)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE------------------------------------------
T ss_pred             ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE------------------------------------------
Confidence            5888998  6788877777778889999875 321110                                          


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                           .             .......+..+++.++|+++++. .++.|..||.. .. .....      .......+..+
T Consensus        93 -----~-------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~------~~~~~~~~~~i  146 (299)
T 2z2n_A           93 -----T-------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK-IREYE------LPNKGSYPSFI  146 (299)
T ss_dssp             -----E-------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEE------CSSTTCCEEEE
T ss_pred             -----e-------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC-EEEec------CCCCCCCCceE
Confidence                 0             01234467889999999888888 78999999984 33 22221      22344578999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l  348 (497)
                      ++++++ .++++...++.|..||. +++..     .+..           ......+..++++++|+++++.. .+.|.+
T Consensus       147 ~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  208 (299)
T 2z2n_A          147 TLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGNKIGR  208 (299)
T ss_dssp             EECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             EEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence            999998 87777777889999998 55432     1111           00123577899999998776664 489999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      ||. + ++.. .+......             ..+.+++++++|+++++...++.|..||.
T Consensus       209 ~~~-~-g~~~-~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          209 ITT-S-GEIT-EFKIPTPN-------------ARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ECT-T-CCEE-EEECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             ECC-C-CcEE-EEECCCCC-------------CCceeEEECCCCCEEEeccCCceEEEECC
Confidence            998 4 4432 23211110             01258999999997777767899999997

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=1.1e-12  Score=121.80  Aligned_cols=245  Identities=11%  Similarity=0.100  Sum_probs=155.7

Q ss_pred             CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      +...+.+++|+|+|++++++..++.|.+||.++++.                       ......+.            .
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~~------------~   87 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----------------------KRPFVSHK------------A   87 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------------------EEEEECSS------------S
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-----------------------EEEeeCCC------------C
Confidence            445678999999999888888899999999877642                       11111333            6


Q ss_pred             ceeEEEEEecCCCCEEEEEeCC----ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          111 KINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      .+.+++|  ++++.++++...+    +.|.+||..++.......                                    
T Consensus        88 ~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~------------------------------------  129 (333)
T 2dg1_A           88 NPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE------------------------------------  129 (333)
T ss_dssp             SEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC------------------------------------
T ss_pred             CcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc------------------------------------
Confidence            6999999  6888877777666    689999887665321100                                    


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCccCceeeEEeecCCCcc
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                                             ...+...+.+++++|+|+++++. .      .+.|..+|.. +++....        
T Consensus       130 -----------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~~~~--------  177 (333)
T 2dg1_A          130 -----------------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI--------  177 (333)
T ss_dssp             -----------------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE--------
T ss_pred             -----------------------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEEEEe--------
Confidence                                   01234568899999999888876 3      3566666655 3333222        


Q ss_pred             CCCCCCeEEEEEeCCCCcEEE-EEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933          260 DDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  337 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  337 (497)
                      ......+..++|+|++ +.|+ +.+.++.|.+||+.+ +...    ..+.....     ..+.++ ..+..++++++|++
T Consensus       178 ~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~~-----~~~~~~-~~~~~i~~d~~G~l  246 (333)
T 2dg1_A          178 IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATIP-----YYFTGH-EGPDSCCIDSDDNL  246 (333)
T ss_dssp             EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEE-----EECCSS-SEEEEEEEBTTCCE
T ss_pred             ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceEE-----EecCCC-CCCCceEECCCCCE
Confidence            1123457889999998 7554 445688999999964 3221    11100000     000111 35678999999998


Q ss_pred             EEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          338 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       338 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      +++.. ++.|.+||..  ++.+..+..+....         .....+.+++|+||++.|+.++.++
T Consensus       247 ~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~---------g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          247 YVAMYGQGRVLVFNKR--GYPIGQILIPGRDE---------GHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEEETTTEEEEECTT--SCEEEEEECTTGGG---------TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEEEcCCCEEEEECCC--CCEEEEEEcCCCcc---------ccccCcceEEECCCCCEEEEEeCcc
Confidence            77764 4899999984  66666665443200         0000015899999987777666553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=2.4e-13  Score=139.74  Aligned_cols=239  Identities=8%  Similarity=-0.061  Sum_probs=158.0

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-c-CC----eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933          212 AHDFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  285 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  285 (497)
                      +|...+..++|||||+.|+.+ . +|    .|++||+. +++.....      ..  ...+..++|+||| +.|+.++.+
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-tg~~~~~~------~~--~~~~~~~~wspDg-~~l~~~~~~  191 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDV------LE--RVKFSCMAWTHDG-KGMFYNAYP  191 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEE------EE--EECSCCEEECTTS-SEEEEEECC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCccc------cc--CcccceEEEEeCC-CEEEEEEEC
Confidence            444567889999999999876 3 33    89999998 55544421      11  1235679999999 888888877


Q ss_pred             Ce----------------EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe------c
Q 010933          286 GF----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------Y  343 (497)
Q Consensus       286 g~----------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~  343 (497)
                      +.                |++|++.+++....  .++..           ..|...+..+.|+|||++|+.+.      +
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  258 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPV  258 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccce--EEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence            65                99999987652211  12222           11224467899999999988753      3


Q ss_pred             CeEEEEecCC------CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CcEEEEEcCCCC
Q 010933          344 MNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS  413 (497)
Q Consensus       344 ~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~vw~~~~~~  413 (497)
                      ..|++||+..      +......+..+....                ...|+|+|+.|+..+.+    +.|.+|++.++.
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            6899999874      222455555554432                24588999888766653    369999998764


Q ss_pred             c-ceEEEeccCc--ceeeeEeecCCCcccccccceeEeeccCc-eec--C--CCCCcccccccCCCeEEEEEecCCCEEE
Q 010933          414 A-GGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S--SSGHHELSYNLSSKLLHLAWHPTTNLIA  485 (497)
Q Consensus       414 ~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~--~~~~~~~~~~~~~~i~~l~~~p~~~~la  485 (497)
                      . ....+..|..  .+..+.+++  ++.+     +++...++. ++|  .  .++....+..+...|..++++|+++.|+
T Consensus       323 ~~~~~~l~~~~~~~~~~~~~~~~--~~~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          323 ESKWKVLVPEHEKDVLEWVACVR--SNFL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEET--TTEE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             cccceeccCCCCCCeEEEEEEEc--CCEE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            2 2245555544  677788874  4444     777888877 666  3  3333344444567788999999998776


Q ss_pred             EEeC-----CceEEEe
Q 010933          486 CANG-----NSLFFHY  496 (497)
Q Consensus       486 ~~~~-----~~~~i~~  496 (497)
                      ....     ..+|.|.
T Consensus       396 ~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEECSSCCCEEEEEE
T ss_pred             EEEeCCCCCCEEEEEE
Confidence            5432     3577765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=2.5e-13  Score=126.92  Aligned_cols=248  Identities=8%  Similarity=0.038  Sum_probs=140.2

Q ss_pred             cceEEEEEcCCCCEEEEeecC---C--eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           33 DIVSAIEFDKTGDYLAVGDRG---G--RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ..+..++|||||++||..+.+   +  .|.+|++.+++.                        ..+..+.          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~------------------------~~l~~~~----------  104 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS------------------------KKILEAK----------  104 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE------------------------EEEEEES----------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce------------------------EEEEcCC----------
Confidence            567889999999999988754   3  377778776532                        1122233          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        . +..++|  +||++.|+.++.+..      .............                     ..+..-..   ..
T Consensus       105 --~-~~~~~w--spdg~~l~~~~~~~~------~~~~~~~~~~~~~---------------------~~~g~~~~---~~  149 (347)
T 2gop_A          105 --N-IRSLEW--NEDSRKLLIVGFKRR------EDEDFIFEDDVPA---------------------WFDDLGFF---DG  149 (347)
T ss_dssp             --E-EEEEEE--CTTSSEEEEEEECCC------C---------CCC---------------------C------------
T ss_pred             --C-ccceeE--CCCCCEEEEEEccCC------CcCCcEEEcccce---------------------eecCcccc---cC
Confidence              5 888999  789999998875420      0000000000000                     00000000   00


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC------C-eEEEEeCccCceeeEEeecCCCcc
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWNLEISDQCFNIVDMKPSNM  259 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~~~~~  259 (497)
                      ....+.+|++...   +.++.+ .. . .+..++|+|+| +++++ .+      . ...+|.++ .++...+        
T Consensus       150 ~~~~l~~~d~~~~---~~~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l--------  213 (347)
T 2gop_A          150 EKTTFWIFDTESE---EVIEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM--------  213 (347)
T ss_dssp             CEEEEEEEETTTT---EEEEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE--------
T ss_pred             ccceEEEEECCCC---eEEeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe--------
Confidence            0234556665432   221222 22 3 77889999999 77766 43      2 44555555 4544333        


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCC--------CeEEEEEccCCcccccccceecccccccCCccccccccccccE-EE
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IK  330 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~  330 (497)
                      ..+ ..+..+  +|+| +.|+.++.+        ..|.+||  +++..    .....             +...+.. +.
T Consensus       214 ~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~-------------~~~~~~~~~~  270 (347)
T 2gop_A          214 FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILDE-------------VDRGVGQAKI  270 (347)
T ss_dssp             EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESSTT-------------CCSEEEEEEE
T ss_pred             ccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCceE----ecccc-------------CCcccCCccE
Confidence            223 444444  9999 777777644        3688888  43321    12111             2345665 88


Q ss_pred             EeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE-EEEE
Q 010933          331 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL-RIFS  408 (497)
Q Consensus       331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i-~vw~  408 (497)
                      |+ ++ +++++. ++.++|| +. .++..... .+...+               .+++|+|  .++++++.++.. .||.
T Consensus       271 ~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~~-~~~~~v---------------~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          271 KD-GK-VYFTLFEEGSVNLY-IW-DGEIKPIA-KGRHWI---------------MGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             ET-TE-EEEEEEETTEEEEE-EE-SSSEEEEE-CSSSEE---------------EEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             Ec-Cc-EEEEEecCCcEEEE-Ec-CCceEEEe-cCCCeE---------------EeeeeeC--cEEEEEcCCCChHHheE
Confidence            99 88 777764 4899999 87 36543333 233322               5799999  677787777765 7777


Q ss_pred             cC
Q 010933          409 HG  410 (497)
Q Consensus       409 ~~  410 (497)
                      ++
T Consensus       329 ~~  330 (347)
T 2gop_A          329 WD  330 (347)
T ss_dssp             ES
T ss_pred             eC
Confidence            76

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=1.6e-12  Score=116.76  Aligned_cols=245  Identities=10%  Similarity=0.053  Sum_probs=164.2

Q ss_pred             CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC
Q 010933           43 TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN  122 (497)
Q Consensus        43 ~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~  122 (497)
                      .+++|++++.|+.|.+||.++++.                       +.++..+..           ..+.++.+  .|+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------------~w~~~~~~~-----------~~~~~~~~--~pd   47 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI-----------------------VWEYPLEKG-----------WECNSVAA--TKA   47 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE-----------------------EEEEECCTT-----------CCCCEEEE--CTT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE-----------------------EEEeCCCcc-----------CCCcCeEE--CCC
Confidence            468999999999999999988754                       444444320           24778888  688


Q ss_pred             CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933          123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  202 (497)
Q Consensus       123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (497)
                      |+.++  +.++.|..||. +++.                                                +|...    
T Consensus        48 G~ilv--s~~~~V~~~d~-~G~~------------------------------------------------~W~~~----   72 (276)
T 3no2_A           48 GEILF--SYSKGAKMITR-DGRE------------------------------------------------LWNIA----   72 (276)
T ss_dssp             SCEEE--ECBSEEEEECT-TSCE------------------------------------------------EEEEE----
T ss_pred             CCEEE--eCCCCEEEECC-CCCE------------------------------------------------EEEEc----
Confidence            88888  45778999998 5553                                                23322    


Q ss_pred             ceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933          203 ARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  280 (497)
Q Consensus       203 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  280 (497)
                              ..+...+.++.+.++|+.+++. . ++.|..+|.+  ++.+..+.+.. ....+......+++.++| ++++
T Consensus        73 --------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G-~~lv  140 (276)
T 3no2_A           73 --------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG-NYLV  140 (276)
T ss_dssp             --------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-CEEE
T ss_pred             --------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-CEEE
Confidence                    1222357788999999999987 6 7888888764  44444333221 112233345567889999 9999


Q ss_pred             EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceee
Q 010933          281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA  359 (497)
Q Consensus       281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~  359 (497)
                      +...++.|..||.. |+.+    ..+..              .....++.+.++|++++++.+ +.|..+|..+ ++.+.
T Consensus       141 ~~~~~~~v~~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G~~~w  200 (276)
T 3no2_A          141 PLFATSEVREIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-NRIVR  200 (276)
T ss_dssp             EETTTTEEEEECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-CCEEE
T ss_pred             EecCCCEEEEECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-CcEEE
Confidence            99999999999988 7654    33332              124566788899999988765 7899999986 89988


Q ss_pred             eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCCcceEEE
Q 010933          360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--------g~i~vw~~~~~~~~~~~~  419 (497)
                      ++......-         .....+..+...++|..+++....        +..+++++.....+.-.+
T Consensus       201 ~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          201 RVNANDIEG---------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             EEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             EecCCCCCC---------ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence            887543110         011223678889999988877421        244566664333433333

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=1.8e-12  Score=118.18  Aligned_cols=235  Identities=10%  Similarity=0.014  Sum_probs=153.9

Q ss_pred             CCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933          212 AHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  289 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  289 (497)
                      .+.....+++|+|+|+ +++++ .++.|+.|+.. ++  ...       +..+...+.+++++|+| .++++...++.|.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-~~--~~~-------~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~   93 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-GQ--LSP-------EMHPSHHQNGHCLNKQG-HLIACSHGLRRLE   93 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-SC--EEE-------EESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-CC--eEE-------EECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence            4455678999999998 67777 89999999998 44  333       33456778999999999 8777776778999


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE----e-----------c-CeEEEEecCC
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----D-----------Y-MNLKLWDIRM  353 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~-----------~-~~i~lwd~~~  353 (497)
                      +||..+++..    .......         ......++.++++|+|+++++.    +           + +.-.||.+..
T Consensus        94 ~~d~~~g~~~----~~~~~~~---------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~  160 (296)
T 3e5z_A           94 RQREPGGEWE----SIADSFE---------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP  160 (296)
T ss_dssp             EECSTTCCEE----EEECEET---------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred             EEcCCCCcEE----EEeeccC---------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence            9999777532    1111100         0011356789999999988873    2           0 1124444433


Q ss_pred             CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCc-c-eEEEeccCcceeeeE
Q 010933          354 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG-VGSA-G-GITVEAGKNENRKPI  430 (497)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~-~~~~-~-~~~~~~~~~~v~~~~  430 (497)
                      .++ +..+..+...               ...++|+|+++.|++.+.++.|++|++. ++.. . ...+..+...+..++
T Consensus       161 ~g~-~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~  224 (296)
T 3e5z_A          161 DGT-LSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR  224 (296)
T ss_dssp             TSC-EEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred             CCC-EEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence            233 3333322221               1589999999999878888999999997 3432 1 123333455567788


Q ss_pred             eecCCCcccccccceeEeeccCc-eecCCCCCc-ccccccCCCeEEEEE-ecCCCEEEEEeCCceEEEe
Q 010933          431 LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-ELSYNLSSKLLHLAW-HPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       431 ~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~-~~~~~~~~~i~~l~~-~p~~~~la~~~~~~~~i~~  496 (497)
                      +.+  ++.+     .++.  ++. .+|...... .....+.. +++++| .|+++.|.+++.++++-+.
T Consensus       225 ~d~--~G~l-----~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          225 VDA--GGLI-----WASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             EBT--TSCE-----EEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             ECC--CCCE-----EEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence            877  4544     3443  444 788544333 33333444 889999 5899999999988887664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=6.5e-13  Score=136.17  Aligned_cols=238  Identities=6%  Similarity=-0.048  Sum_probs=148.8

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933          211 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  284 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  284 (497)
                      .+|...+..++|||||+.|+.+      .+..|++||+. +++....     ..+...  ....++|+|+| +.|+.++.
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-tg~~~~~-----~~~~~~--~~~~~~wspDg-~~l~~~~~  187 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-SGEWSKV-----DVIEGG--KYATPKWTPDS-KGFYYEWL  187 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-TCCBCSS-----CCBSCC--TTCCCEECTTS-SEEEEEEC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-CCCCcCC-----cccCcc--cccceEEecCC-CEEEEEEe
Confidence            3566678899999999999853      34689999999 4443200     011111  12678999999 88999888


Q ss_pred             CCe-------------EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC----eE
Q 010933          285 RGF-------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM----NL  346 (497)
Q Consensus       285 dg~-------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~----~i  346 (497)
                      |..             |++|++.++.....  .++..           ..+...+..+.|+|||++|+.+. ++    .|
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l  254 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER-----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDV  254 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC-----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec-----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence            765             99999987753211  12222           11234678999999999988763 34    66


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe---CCCcEEEEEcCCCCcc-eEEEecc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAG-GITVEAG  422 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~vw~~~~~~~~-~~~~~~~  422 (497)
                      ++|+... + ....+..+....               ....+ ++|++++...   .++.|.+|++.+++.. ...+..+
T Consensus       255 ~~~~~~~-~-~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~  316 (695)
T 2bkl_A          255 YWKRPGE-K-DFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE  316 (695)
T ss_dssp             EEECTTC-S-SCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred             EEEcCCC-C-ceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence            7776542 3 344454444322               34555 5666444444   2588999999876431 1333333


Q ss_pred             --CcceeeeEeecCCCcccccccceeEeeccCc-eec--C-CCCCccccccc-CCCeEEEEEecCCCEEEEEeC-----C
Q 010933          423 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSYNL-SSKLLHLAWHPTTNLIACANG-----N  490 (497)
Q Consensus       423 --~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~~~~-~~~i~~l~~~p~~~~la~~~~-----~  490 (497)
                        ...+..+.++   ++.+     +++...++. ++|  . .++.......+ ...|..++++|+++.|+....     .
T Consensus       317 ~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          317 DSSASLLSVSIV---GGHL-----SLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             CSSCEEEEEEEE---TTEE-----EEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             CCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence              4456777776   3344     788888888 888  2 23322222222 556778899999987775442     3


Q ss_pred             ceEEEe
Q 010933          491 SLFFHY  496 (497)
Q Consensus       491 ~~~i~~  496 (497)
                      .+|+|+
T Consensus       389 ~v~~~d  394 (695)
T 2bkl_A          389 QIYKTS  394 (695)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            577775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=8.4e-12  Score=115.42  Aligned_cols=160  Identities=13%  Similarity=-0.035  Sum_probs=107.1

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEE
Q 010933          215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD  292 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d  292 (497)
                      .....++++++++.+++. .++.|.+||.. ..+....+....  ..+.......+++ .++ .++++.. .++.|.++|
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKID  158 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEE
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEE
Confidence            456788998888666666 79999999998 555554433221  0111124456667 343 4444443 489999999


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c----------CeEEEEecCCCCceeeee
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----------MNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~----------~~i~lwd~~~~~~~~~~~  361 (497)
                      +.+++..    ..+..              ......+.++|+|++++++. +          +.|.++|..+ ++....+
T Consensus       159 ~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~  219 (328)
T 3dsm_A          159 TETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQF  219 (328)
T ss_dssp             TTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEE
T ss_pred             CCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEE
Confidence            9987654    22222              12357789999998777753 2          6899999986 6766666


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      .......              ...++|+|++++|+++..  .|.+||..+++.
T Consensus       220 ~~~~g~~--------------p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          220 KFKLGDW--------------PSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             ECCTTCC--------------CEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             ecCCCCC--------------ceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            5432110              158999999999988765  899999987743

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=2e-12  Score=133.55  Aligned_cols=245  Identities=11%  Similarity=0.048  Sum_probs=147.6

Q ss_pred             cceEEEEEcCCCCEEEEeecC-----CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      ..+..++|||||++||.++.+     ..|++||+.+++.                       +. ...+.          
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~-----------------------~~-~~~~~----------  208 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP-----------------------LA-DELKW----------  208 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE-----------------------EE-EEEEE----------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-----------------------CC-ccCCC----------
Confidence            478899999999999987654     3699999998753                       11 11111          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCcc--------------EEEeecCchheeccccCCCCCccccccccccccCccccC
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  173 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~--------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (497)
                        ..+..++|  +|| +.|+.++.|+.              |.+|++.++...                           
T Consensus       209 --~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---------------------------  256 (741)
T 1yr2_A          209 --VKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA---------------------------  256 (741)
T ss_dssp             --EESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---------------------------
T ss_pred             --ceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---------------------------
Confidence              22357889  688 88888876654              444554332210                           


Q ss_pred             CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC-----eEEEEeCccCc-
Q 010933          174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISD-  246 (497)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~-----~i~iwd~~~~~-  246 (497)
                                                   ...+... ..+...+..+.|+|||+.|+.. .++     .|++||+.... 
T Consensus       257 -----------------------------~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~  306 (741)
T 1yr2_A          257 -----------------------------DQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI  306 (741)
T ss_dssp             -----------------------------CEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred             -----------------------------CEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence                                         0111110 2334458899999999988876 443     89999988331 


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC----CCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                      .....       +..+...+... ++|+| ..|+..+.    ++.|.+||+.++.  ......+..             +
T Consensus       307 ~~~~~-------l~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~-------------~  362 (741)
T 1yr2_A          307 GPVTA-------LIPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPE-------------S  362 (741)
T ss_dssp             CCCEE-------EECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECC-------------C
T ss_pred             cccEE-------ecCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecC-------------C
Confidence            20222       22333444444 34888 77777765    3569999987742  000122222             1


Q ss_pred             cccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeec-ccccccccccCCCCCccceeEEEEcCCCCEEEEE--
Q 010933          323 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--  398 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--  398 (497)
                      ...+..++++ ++.++++. .++..+||.+...++....+..+ ...               +..++++|+++.|+..  
T Consensus       363 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~---------------v~~~~~s~d~~~l~~~~s  426 (741)
T 1yr2_A          363 KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS---------------ASGLSGRPGDRHAYLSFS  426 (741)
T ss_dssp             SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE---------------EEEEECCBTCSCEEEEEE
T ss_pred             CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE---------------EEEeecCCCCCEEEEEEc
Confidence            2345667776 45566665 45776666554335555555432 221               1578899998866622  


Q ss_pred             --eCCCcEEEEEcCCCC
Q 010933          399 --SYSNLLRIFSHGVGS  413 (497)
Q Consensus       399 --~~dg~i~vw~~~~~~  413 (497)
                        ...+.|++||+.+++
T Consensus       427 s~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          427 SFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTEEEEEEEEETTTTE
T ss_pred             CCCCCCEEEEEECCCCc
Confidence              235789999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=1.3e-11  Score=113.43  Aligned_cols=247  Identities=11%  Similarity=0.125  Sum_probs=156.8

Q ss_pred             cceEEEEEcCCCCEEEE-------eecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc--ccccCcccccc
Q 010933           33 DIVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYL  103 (497)
Q Consensus        33 ~~I~~i~~sp~g~~las-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~  103 (497)
                      ....+++|+++|+++++       +..++.|.+||..+++.                     ..+..  ..++.      
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------~~~~~~~~~~~~------   70 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK---------------------TVICKPEVNGYG------   70 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE---------------------EEEECCEETTEE------
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE---------------------EEEEecccCCCC------
Confidence            45679999999998888       67889999999876642                     11100  01233      


Q ss_pred             cccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheecc-ccCCCCCccccccccccccCccccCCCCCcccc
Q 010933          104 KSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  181 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (497)
                            ..+..+++  +++ +.+++ ++..+.|.+|+.. ++.... .....                            
T Consensus        71 ------~~~~~i~~--~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~----------------------------  112 (314)
T 1pjx_A           71 ------GIPAGCQC--DRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSE----------------------------  112 (314)
T ss_dssp             ------CCEEEEEE--CSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTT----------------------------
T ss_pred             ------CCCceEEE--ecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCC----------------------------
Confidence                  56889999  677 55444 4444478889987 554322 10000                            


Q ss_pred             cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC---------------CeEEEEeCccC
Q 010933          182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLWNLEIS  245 (497)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------------~~i~iwd~~~~  245 (497)
                                                   ......+.++++.++|+++++. .+               +.|..|+..  
T Consensus       113 -----------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  161 (314)
T 1pjx_A          113 -----------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--  161 (314)
T ss_dssp             -----------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred             -----------------------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence                                         1112357789999999888877 54               567777765  


Q ss_pred             ceeeEEeecCCCccCCCCCCeEEEEEe----CCCCcEEEEE-eCCCeEEEEEcc-CCcccccccceecccccccCCcccc
Q 010933          246 DQCFNIVDMKPSNMDDLTEVITSAEFH----PIYCNLLAYS-SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFF  319 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~-~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  319 (497)
                      ++....        ..+......++++    |++ +.|+++ ..++.|.+||+. +++...  ...+..          +
T Consensus       162 g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~----------~  220 (314)
T 1pjx_A          162 GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH----------I  220 (314)
T ss_dssp             SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE----------C
T ss_pred             CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE----------C
Confidence            332222        1223456889999    998 665555 567899999986 332110  011111          1


Q ss_pred             cccc-ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-
Q 010933          320 TEII-ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-  396 (497)
Q Consensus       320 ~~~~-~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-  396 (497)
                      ..+. .....++++++|+++++.. ++.|.+||..+ ++.+..+..+...               +.+++|+|+++.|+ 
T Consensus       221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v  284 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFV  284 (314)
T ss_dssp             CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEE
T ss_pred             CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEE
Confidence            1111 3467899999998887764 58999999874 5555555544322               16899999999554 


Q ss_pred             EEeCCCcEEEEEcCCC
Q 010933          397 TGSYSNLLRIFSHGVG  412 (497)
Q Consensus       397 s~~~dg~i~vw~~~~~  412 (497)
                      +...++.|..|++...
T Consensus       285 ~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          285 TEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EETTTTEEEEEECSSC
T ss_pred             EeCCCCeEEEEeCCCC
Confidence            5556789999998753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.50  E-value=7.7e-11  Score=116.23  Aligned_cols=318  Identities=12%  Similarity=0.048  Sum_probs=183.5

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEec--CCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      ...+..++|||||+++++++.|+.|.+||+.  +.+                       .+.++...             
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----------------------~v~~i~~G-------------  239 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----------------------TVAEIKIG-------------  239 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----------------------EEEEEECC-------------
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----------------------EeEEEecC-------------
Confidence            3466789999999999999999999999985  432                       23333332             


Q ss_pred             cceeEEEEEec----CCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cccc
Q 010933          110 EKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH  183 (497)
Q Consensus       110 ~~i~~l~~~~s----~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  183 (497)
                      .....++|  +    |||+++++++ .+++|.++|..+.+........... +.. ..+.++.++.....++... +++.
T Consensus       240 ~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-~~~-~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          240 SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDE-QEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTT-CCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-ccc-ccccCCCceEEEEEcCCCCEEEEE
Confidence            23578899  6    5999988876 5699999998887655433221100 000 0000000111111111111 1111


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeec-CCCccC
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KPSNMD  260 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~~  260 (497)
                        ....+.+.+.|........ +..+  ........+.|+|+|++++++  .++.|.++|.. .++....++. .   ..
T Consensus       316 --~~~~g~v~~vd~~~~~~~~-v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg---~~  386 (567)
T 1qks_A          316 --VKETGKILLVDYTDLNNLK-TTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG---QT  386 (567)
T ss_dssp             --ETTTTEEEEEETTCSSEEE-EEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS---SS
T ss_pred             --ecCCCeEEEEecCCCccce-eeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccC---cC
Confidence              1235677777765432111 1111  234456788999999988765  78999999999 5666666543 2   12


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCccc---ccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  336 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  336 (497)
                      .|.+.-..+ ++|++...++++. .++.|.++|...++..   .+.++.+..             ....-..+..+|+++
T Consensus       387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-------------~g~g~~~i~~~p~~~  452 (567)
T 1qks_A          387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-------------LGGGSLFIKTHPNSQ  452 (567)
T ss_dssp             BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SCSCCCCEECCTTCS
T ss_pred             CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------------CCCCCEEEEeCCCCC
Confidence            343222222 6887524555554 4689999999874321   111122222             012234577899999


Q ss_pred             EEEEEe--------cCeEEEEecCCC-----CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe----
Q 010933          337 HLLSRD--------YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS----  399 (497)
Q Consensus       337 ~l~~~~--------~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~----  399 (497)
                      ++.+..        ...|.++|+.+.     .+....+...+-     ..+.+  ....+..+.|+|+|+++....    
T Consensus       453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~G~~~~~s~~~~~  525 (567)
T 1qks_A          453 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-----AGITE--GQPRVVQGEFNKDGTEVWFSVWNGK  525 (567)
T ss_dssp             EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-----HTCCS--SCCEEEEEEECTTSSEEEEEEECCT
T ss_pred             eEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc-----cccCC--CCcceEeeeECCCCCEEEEEeecCC
Confidence            998864        259999999863     222233321000     00000  000125899999999877653    


Q ss_pred             -CCCcEEEEEcCCCCcceEEEe
Q 010933          400 -YSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       400 -~dg~i~vw~~~~~~~~~~~~~  420 (497)
                       .++.|.|+|.++.+. ...++
T Consensus       526 ~~~~~i~v~D~~t~~~-~~~i~  546 (567)
T 1qks_A          526 DQESALVVVDDKTLEL-KHVIK  546 (567)
T ss_dssp             TSCCEEEEEETTTTEE-EEEEC
T ss_pred             CCCCcEEEEECCCceE-EEEeC
Confidence             379999999998743 34444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.49  E-value=2.6e-10  Score=103.79  Aligned_cols=237  Identities=8%  Similarity=0.029  Sum_probs=159.7

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...+.+++++++|++.++...++.|.+||.. ++.                     .. ..+..+.            ..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------------------~~-~~~~~~~------------~~   63 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------------------KE-FEVPTPD------------AK   63 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------------------EE-EECSSTT------------CC
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------------------EE-EECCCCC------------Cc
Confidence            4578899999999988877678999999976 432                     11 0111222            55


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      +..+++  ++++..+++...++.|..||.. ++.....                                          
T Consensus        64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~------------------------------------------   98 (300)
T 2qc5_A           64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEYP------------------------------------------   98 (300)
T ss_dssp             EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE------------------------------------------
T ss_pred             ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEec------------------------------------------
Confidence            888988  6788777776667889999876 4422110                                          


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        .......+.++++.++|+++++. .++.|..||.. .. .....      +......+..++
T Consensus        99 ------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~------~~~~~~~~~~i~  152 (300)
T 2qc5_A           99 ------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEYD------LPNKGSYPAFIT  152 (300)
T ss_dssp             ------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEEE------CSSTTCCEEEEE
T ss_pred             ------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEcc------CCCCCCCceeEE
Confidence                              01223567889999999988888 78899999987 33 22221      223445789999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw  349 (497)
                      +++++ +++++...++.|..+|. +++..     .+..           ..+...+..++++++|++.++... +.|.+|
T Consensus       153 ~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  214 (300)
T 2qc5_A          153 LGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNKIGRI  214 (300)
T ss_dssp             ECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             ECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence            99999 76666666789999998 44322     1111           011245788999999987776644 789999


Q ss_pred             ecCCCCceeee-eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          350 DIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       350 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      |..  ++.... +.....               ...+++++++|+++++...++.|..|+.
T Consensus       215 ~~~--g~~~~~~~~~~~~---------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          215 TTT--GEISEYDIPTPNA---------------RPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             CTT--CCEEEEECSSTTC---------------CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             cCC--CcEEEEECCCCCC---------------CceEEEECCCCCEEEeccCCCeEEEECC
Confidence            983  443322 111111               1258999999997777767799999997

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=2.3e-11  Score=109.17  Aligned_cols=198  Identities=11%  Similarity=0.068  Sum_probs=140.5

Q ss_pred             CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCc
Q 010933          122 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  201 (497)
Q Consensus       122 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (497)
                      .++.|++++.|+.|.+||.++++...                                                ..    
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w------------------------------------------------~~----   31 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVW------------------------------------------------EY----   31 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEE------------------------------------------------EE----
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEE------------------------------------------------Ee----
Confidence            45789999999999999998887433                                                21    


Q ss_pred             cceeeeeeccCCC-CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933          202 HARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  280 (497)
Q Consensus       202 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  280 (497)
                               ..+. ..+.++.+.|+|++++ +.++.|+.||.. ++...+. .     . +....+.++.+.++| ++++
T Consensus        32 ---------~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~~~W~~-~-----~-~~~~~~~~~~~~~dG-~~lv   92 (276)
T 3no2_A           32 ---------PLEKGWECNSVAATKAGEILF-SYSKGAKMITRD-GRELWNI-A-----A-PAGCEMQTARILPDG-NALV   92 (276)
T ss_dssp             ---------ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT-SCEEEEE-E-----C-CTTCEEEEEEECTTS-CEEE
T ss_pred             ---------CCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC-CCEEEEE-c-----C-CCCccccccEECCCC-CEEE
Confidence                     1222 3577889999999888 556779999984 5544332 1     1 123467889999999 8888


Q ss_pred             EEeC-CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCcee
Q 010933          281 YSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  358 (497)
Q Consensus       281 ~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~  358 (497)
                      +.+. ++.|..+|. +++.+    ..+.....       ...+......+++.++|+++++... +.|..||..  ++.+
T Consensus        93 ~~~~~~~~v~~vd~-~Gk~l----~~~~~~~~-------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~  158 (276)
T 3no2_A           93 AWCGHPSTILEVNM-KGEVL----SKTEFETG-------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLL  158 (276)
T ss_dssp             EEESTTEEEEEECT-TSCEE----EEEEECCS-------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEE
T ss_pred             EecCCCCEEEEEeC-CCCEE----EEEeccCC-------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEE
Confidence            8877 788888885 55543    22221000       0011124556678899999998854 999999985  8888


Q ss_pred             eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                      .++......                .++.+.++|+++++++.+++|..+|..+++.+ ..+..
T Consensus       159 w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-w~~~~  204 (276)
T 3no2_A          159 NSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-RRVNA  204 (276)
T ss_dssp             EEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTCCEE-EEEEG
T ss_pred             EEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-EEecC
Confidence            888765332                46888999999999999999999999988554 55543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=5.4e-11  Score=106.70  Aligned_cols=197  Identities=9%  Similarity=0.027  Sum_probs=128.1

Q ss_pred             ceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          111 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ...++++  ++++..++ +.+.++.|.+|+..+......                                         
T Consensus        25 ~p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-----------------------------------------   61 (270)
T 1rwi_B           25 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVL-----------------------------------------   61 (270)
T ss_dssp             CEEEEEE--CTTCCEEEEECSSSCEEEEECC-----EEC-----------------------------------------
T ss_pred             CccceEE--CCCCCEEEEccCCCCcEEEecCCCcccceE-----------------------------------------
Confidence            5788999  67888666 446788999998755432111                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                          ...+...+.++++.++|+++++..++.|.+||.. +......       .......+..+
T Consensus        62 --------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-~~~~~~~-------~~~~~~~p~~i  113 (270)
T 1rwi_B           62 --------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-SNNQTVL-------PFDGLNYPEGL  113 (270)
T ss_dssp             --------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT-CSCCEEC-------CCCSCSSEEEE
T ss_pred             --------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC-CceEeee-------ecCCcCCCcce
Confidence                                0122345678999999985555578899999987 3332221       11223568999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  348 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~l  348 (497)
                      +++++| +++++...++.|.+|+..+....     ....            .....+..++++++|+++++... +.|.+
T Consensus       114 ~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~-----~~~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~  175 (270)
T 1rwi_B          114 AVDTQG-AVYVADRGNNRVVKLAAGSKTQT-----VLPF------------TGLNDPDGVAVDNSGNVYVTDTDNNRVVK  175 (270)
T ss_dssp             EECTTC-CEEEEEGGGTEEEEECTTCCSCE-----ECCC------------CSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred             EECCCC-CEEEEECCCCEEEEEECCCceeE-----eecc------------ccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence            999999 77777777889999976543221     0000            01135788999999987766643 89999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      ||... .........+..               ...+++++++|.++++...++.|.+|+....
T Consensus       176 ~~~~~-~~~~~~~~~~~~---------------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          176 LEAES-NNQVVLPFTDIT---------------APWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             ECTTT-CCEEECCCSSCC---------------SEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             EecCC-CceEeecccCCC---------------CceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            99874 332221111111               1158999999988777778899999998654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.47  E-value=2.1e-11  Score=112.71  Aligned_cols=248  Identities=8%  Similarity=0.065  Sum_probs=155.1

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      .....+.+. ++++.++...++.|.+||..+++.                       +.++.. .            ...
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-----------------------~~~i~~-~------------~~p   86 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-----------------------VGRITG-F------------TSP   86 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEEC-C------------SSE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-----------------------EEEcCC-C------------CCC
Confidence            345677774 345555556678999999988753                       333432 2            447


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      ..+++  ++++..+++...++.|.+||..+++..........                                      
T Consensus        87 ~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~--------------------------------------  126 (328)
T 3dsm_A           87 RYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM--------------------------------------  126 (328)
T ss_dssp             EEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------------------------------
T ss_pred             cEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------------------------------
Confidence            88888  45664444444899999999988775432111000                                      


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        .+.......+++ .+++.+++. . ++.|.++|.. .++....+..        ......++
T Consensus       127 ------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~--------g~~p~~i~  178 (328)
T 3dsm_A          127 ------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE-TDKVVDELTI--------GIQPTSLV  178 (328)
T ss_dssp             ------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT-TTEEEEEEEC--------SSCBCCCE
T ss_pred             ------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC-CCeEEEEEEc--------CCCccceE
Confidence                              011113344556 445555555 3 8999999998 4555554321        12346788


Q ss_pred             EeCCCCcEEEEEeCC----------CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          271 FHPIYCNLLAYSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       271 ~~~~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ++|+| ++++++..+          +.|.++|..+++..    +.+....            ......++++|++++|.+
T Consensus       179 ~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~------------g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          179 MDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKL------------GDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             ECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCT------------TCCCEEEEECTTSCEEEE
T ss_pred             EcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCC------------CCCceeEEEecCCCEEEE
Confidence            99998 766666554          78999999887643    2222100            125789999999999888


Q ss_pred             EecCeEEEEecCCCCceee-e-eeecccccccccccCCCCCccceeEEEEcC-CCCEEEEE----eCCCcEEEEEcCCCC
Q 010933          341 RDYMNLKLWDIRMDSTPVA-T-FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG----SYSNLLRIFSHGVGS  413 (497)
Q Consensus       341 ~~~~~i~lwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~----~~dg~i~vw~~~~~~  413 (497)
                      +.. .|.+||..+ ++... . +......               ...++++| ++.++++.    ..++.|.+||.+ ++
T Consensus       242 ~~~-~v~~~d~~t-~~~~~~~~~~~~~~~---------------p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          242 INN-DIWRMPVEA-DRVPVRPFLEFRDTK---------------YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             ESS-SEEEEETTC-SSCCSSCSBCCCSSC---------------EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             Ecc-EEEEEECCC-CceeeeeeecCCCCc---------------eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            754 899999975 44321 1 1111010               15899999 55555665    578999999987 64


Q ss_pred             cceEEEec
Q 010933          414 AGGITVEA  421 (497)
Q Consensus       414 ~~~~~~~~  421 (497)
                      .+ ..+..
T Consensus       304 ~~-~~i~~  310 (328)
T 3dsm_A          304 LI-DEFYV  310 (328)
T ss_dssp             EE-EEEEE
T ss_pred             EE-EEEEe
Confidence            43 55543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.2e-11  Score=127.69  Aligned_cols=236  Identities=9%  Similarity=0.012  Sum_probs=144.4

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933          212 AHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  285 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  285 (497)
                      +|...+..++|||||+.|+.+ .+     ..|++||+. +++.....      .  +...+..++|+|+  +.|+.++.+
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~-tg~~~~~~------~--~~~~~~~~~wspD--~~l~~~~~~  228 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA-DGKPLADE------L--KWVKFSGLAWLGN--DALLYSRFA  228 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT-TCCEEEEE------E--EEEESCCCEESTT--SEEEEEECC
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCCcc------C--CCceeccEEEECC--CEEEEEEec
Confidence            344467889999999999886 32     369999999 44443320      1  1122357899999  455555554


Q ss_pred             C--------------eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-----Ce
Q 010933          286 G--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MN  345 (497)
Q Consensus       286 g--------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-----~~  345 (497)
                      +              .|++|++.++.....  .++..           ..+...+..+.|+|||++|+... +     ..
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNT  295 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred             CcccccccccCCCCCEEEEEECCCCchhCE--EEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence            3              388999876642111  12222           11123478899999999888753 2     38


Q ss_pred             EEEEecCCCCc-e-eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CcEEEEEcCCCC-cceEE
Q 010933          346 LKLWDIRMDST-P-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS-AGGIT  418 (497)
Q Consensus       346 i~lwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~vw~~~~~~-~~~~~  418 (497)
                      |++||+.. +. . ...+..+....               ... ++|+|+.|+..+.+    +.|.+|++.++. .....
T Consensus       296 l~~~d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l  358 (741)
T 1yr2_A          296 VHVARVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV  358 (741)
T ss_dssp             EEEEEEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred             EEEEECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence            99999975 31 2 44454443321               233 45899988877763    459999988752 33344


Q ss_pred             EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--C-CCCCccccc-ccCCCeEEEEEecCCCEEEEEe-----
Q 010933          419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSY-NLSSKLLHLAWHPTTNLIACAN-----  488 (497)
Q Consensus       419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~~-~~~~~i~~l~~~p~~~~la~~~-----  488 (497)
                      +..+...+..+.+.   ++.+     +++...++. ++|  . .++....+. .....|..++++|+++.|+...     
T Consensus       359 ~~~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~  430 (741)
T 1yr2_A          359 VPESKDNLESVGIA---GNRL-----FASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ  430 (741)
T ss_dssp             ECCCSSEEEEEEEE---BTEE-----EEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred             ecCCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence            45555555556554   3334     778888888 888  2 233222222 2356788999999998766443     


Q ss_pred             CCceEEEe
Q 010933          489 GNSLFFHY  496 (497)
Q Consensus       489 ~~~~~i~~  496 (497)
                      ...+|.|+
T Consensus       431 P~~i~~~d  438 (741)
T 1yr2_A          431 PATVLALD  438 (741)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEE
Confidence            24577775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=1.3e-10  Score=106.66  Aligned_cols=206  Identities=12%  Similarity=0.042  Sum_probs=130.3

Q ss_pred             cceeEEEEEecCCCCEEEE-------EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          110 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s-------~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                      ....+++|  ++++..+++       ...++.|.+|+..+++......                                
T Consensus        18 ~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------------------------   63 (314)
T 1pjx_A           18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--------------------------------   63 (314)
T ss_dssp             TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--------------------------------
T ss_pred             CCccCceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--------------------------------
Confidence            44678999  678877777       5678899999987666432110                                


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEEcCCeEEEEeCccCceeeEE-eecCCCccC
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMD  260 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~  260 (497)
                                              .. ..++...+.+++++++ |+++++...+.|.+||.+ .. .... ...   ...
T Consensus        64 ------------------------~~-~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~-~~~~~~~~---~~~  113 (314)
T 1pjx_A           64 ------------------------PE-VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT-FEEIAKKD---SEG  113 (314)
T ss_dssp             ------------------------CE-ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC-EEECCSBC---TTS
T ss_pred             ------------------------cc-cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC-EEEEEecc---CCC
Confidence                                    00 0234456889999999 776666655578999987 33 2221 100   001


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCC---------------CeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~d---------------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      .....+.+++++++| +++++...+               +.|..||.. ++..    .....              ...
T Consensus       114 ~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~~--------------~~~  173 (314)
T 1pjx_A          114 RRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQF  173 (314)
T ss_dssp             CBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESS
T ss_pred             ccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----EeccC--------------CCC
Confidence            123457899999999 777766554               567777765 3321    11111              134


Q ss_pred             ccEEEEe----eCCCEEEEE-e-cCeEEEEecCCCCce-----eeeeeecc-cccccccccCCCCCccceeEEEEcCCCC
Q 010933          326 ISDIKFA----NDGQHLLSR-D-YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGL  393 (497)
Q Consensus       326 i~~~~~s----~~g~~l~~~-~-~~~i~lwd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~  393 (497)
                      ...++++    |+++.+..+ . ++.|.+||+...++.     ...+..+. ..               ...++++++|+
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------p~~i~~d~~G~  238 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---------------ADGMDFDEDNN  238 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---------------EEEEEEBTTCC
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---------------CCceEECCCCC
Confidence            5788999    999766655 3 389999998622332     11222111 11               15799999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCCc
Q 010933          394 HFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       394 ~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      ++++...++.|.+||.++++.
T Consensus       239 l~v~~~~~~~i~~~d~~~g~~  259 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDGGQP  259 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSC
T ss_pred             EEEEEcCCCEEEEEcCCCCcE
Confidence            888888889999999876643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=6.8e-10  Score=104.06  Aligned_cols=256  Identities=10%  Similarity=0.071  Sum_probs=151.0

Q ss_pred             EEEEcCCCCEEEEee----------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccccc-Ccccccccc
Q 010933           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLKS  105 (497)
Q Consensus        37 ~i~~sp~g~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~  105 (497)
                      .++|||||++|+++.          .++.|.+||..+.+.                       +.++.-- ...+     
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-----------------------~~~i~~~~~~~~-----  121 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPRF-----  121 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-----------------------EEEEECCCcccc-----
Confidence            899999999998876          367899999977543                       1111100 0000     


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeC--CccEEEeecCchheecc-ccCCCCCccccccccccccCccccCCCCCccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  182 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (497)
                       .....-..++|  +|||++|+.++.  ++.|.++| .+++.... ..                                
T Consensus       122 -~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--------------------------------  165 (373)
T 2mad_H          122 -DVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--------------------------------  165 (373)
T ss_pred             -ccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--------------------------------
Confidence             00011346888  789999998874  57899999 87764321 10                                


Q ss_pred             ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                                    ...   ++.+.|+++ .+++. .||.+.++|. ..+. .......+. ..
T Consensus       166 ------------------------------~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~-~~  209 (373)
T 2mad_H          166 ------------------------------SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAM-LT  209 (373)
T ss_pred             ------------------------------CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE-EEEEecccc-cc
Confidence                                          001   133445443 33444 7888999988 3433 322111100 11


Q ss_pred             CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      +.........+.+++ ..++..+.++.+.+.|+..+....  ...+....... ...  .-.......+.++|+++.+++
T Consensus       210 ~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~-~~~--~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          210 AAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGR-KAD--TWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             CCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcc-ccc--ceecCceEeEEECCCCCEEEE
Confidence            111112335667776 455555578899999997643210  01121100000 000  000123445789999987776


Q ss_pred             Ee-----------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCcEEEE
Q 010933          341 RD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIF  407 (497)
Q Consensus       341 ~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~vw  407 (497)
                      +.           .+.|.++|+.+ .+.+.++......                ..++|+|||+ +++++. .++.|.+|
T Consensus       284 ~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~V~Vi  346 (373)
T 2mad_H          284 LTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             EeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCeEEEE
Confidence            42           15799999987 8888888655433                5899999999 777777 48999999


Q ss_pred             EcCCCCcc
Q 010933          408 SHGVGSAG  415 (497)
Q Consensus       408 ~~~~~~~~  415 (497)
                      |..+++.+
T Consensus       347 D~~t~~vv  354 (373)
T 2mad_H          347 DAGAGDQD  354 (373)
T ss_pred             ECCCCCEE
Confidence            99998655

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=1.7e-10  Score=105.04  Aligned_cols=232  Identities=9%  Similarity=0.074  Sum_probs=146.1

Q ss_pred             ceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           34 IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        34 ~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      --.+..|+|+ +.++++...++.|..||..+++.                        ..+ ...            ..+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~-~~~------------~~~   56 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------QRV-TMD------------APV   56 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------EEE-ECS------------SCE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------EEE-eCC------------Cce
Confidence            4458899995 45566666788999999877532                        111 122            568


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .++++  +++++++++ . ++.|.+||..+++...+.....                                       
T Consensus        57 ~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~---------------------------------------   93 (297)
T 3g4e_A           57 SSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN---------------------------------------   93 (297)
T ss_dssp             EEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT---------------------------------------
T ss_pred             EEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC---------------------------------------
Confidence            89999  678885544 4 5678999988766433211000                                       


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                        ......++.++++|+|+++++. .+         ..-.+|.+...+.....        ...
T Consensus        94 ------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~  147 (297)
T 3g4e_A           94 ------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY--------FDQ  147 (297)
T ss_dssp             ------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE--------EEE
T ss_pred             ------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE--------eec
Confidence                              0112347789999999977764 32         23345554422332222        122


Q ss_pred             CCCeEEEEEeCCCCcEE-EEEeCCCeEEEEEc--cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l-~~~~~dg~i~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      ......++|+|++ +.| ++.+.++.|.+||+  .++....  .+.+..          +..+......++++++|++.+
T Consensus       148 ~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G~lwv  214 (297)
T 3g4e_A          148 VDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEGKLWV  214 (297)
T ss_dssp             ESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTSCEEE
T ss_pred             cccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCCCEEE
Confidence            3446789999999 655 55566889999997  3443210  011111          011124567899999998777


Q ss_pred             EEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEEeC
Q 010933          340 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  400 (497)
Q Consensus       340 ~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~  400 (497)
                      +... +.|..||..+ ++.+..+..+...+               ++++|. |+++.|+.++.
T Consensus       215 a~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred             EEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence            7654 8899999976 78888887664322               689998 88887765554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.39  E-value=1.2e-09  Score=99.27  Aligned_cols=239  Identities=8%  Similarity=0.007  Sum_probs=156.9

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...+.+++++++|.+.++...++.|..|+.+. +.                     ... .+....            ..
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~---------------------~~~-~~~~~~------------~~  100 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG-II---------------------KEY-TLPNPD------------SA  100 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------EEE-ECSSTT------------CC
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE---------------------EEE-eCCCcC------------CC
Confidence            46789999999999888777688899998752 11                     101 111122            55


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      +..+++  ++++.++++...++.|.+|+. +++.....                                          
T Consensus       101 ~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~------------------------------------------  135 (299)
T 2z2n_A          101 PYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYE------------------------------------------  135 (299)
T ss_dssp             EEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEE------------------------------------------
T ss_pred             ceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEec------------------------------------------
Confidence            888998  678877777777888999987 44322110                                          


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        ...+...+..+++.++|+.+++. .++.|..||.. . +.... .     .......+..++
T Consensus       136 ------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~-~-----~~~~~~~~~~i~  189 (299)
T 2z2n_A          136 ------------------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITES-G-DITEF-K-----IPTPASGPVGIT  189 (299)
T ss_dssp             ------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEEE-E-----CSSTTCCEEEEE
T ss_pred             ------------------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC-C-cEEEe-e-----CCCCCCcceeEE
Confidence                              02234467899999999888888 78999999983 3 33222 1     223445688999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lw  349 (497)
                      +++++ .++++...++.|.+||. +++..     .+..           ..+...+.+++++++|+++++. .++.|..|
T Consensus       190 ~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          190 KGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANKIGRL  251 (299)
T ss_dssp             ECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             ECCCC-CEEEEccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence            99998 77776666889999998 55422     1111           0112457899999999876665 34899999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      |..  +. +..+......             ..+.++++ ++++++++.+ .+.|..++.+++
T Consensus       252 d~~--g~-~~~~~~~~~~-------------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          252 TSN--NI-IEEYPIQIKS-------------AEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             ETT--TE-EEEEECSSSS-------------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCC--Cc-eEEEeCCCCC-------------CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            983  43 3333221110             01257888 8888777665 567777887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=7.3e-11  Score=120.69  Aligned_cols=246  Identities=13%  Similarity=0.094  Sum_probs=147.7

Q ss_pred             CCcceEEEEEcCCCCEEEEe-----ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      |...+..++|||||++||.+     +.+..|++||+++++.                       +   ..+...      
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-----------------------~---~~~~~~------  174 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-----------------------L---ETPLKD------  174 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-----------------------E---EEEEEE------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC-----------------------C---ccccCC------
Confidence            45678999999999999853     3335799999998753                       1   111100      


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeCCcc-------------EEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  172 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (497)
                          .....++|  + |++.|+.++.+..             |++|++.++...                          
T Consensus       175 ----~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--------------------------  221 (693)
T 3iuj_A          175 ----VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED--------------------------  221 (693)
T ss_dssp             ----EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG--------------------------
T ss_pred             ----ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc--------------------------
Confidence                11356789  7 8889998887743             555555443210                          


Q ss_pred             CCCCCcccccccccccCcceEEEeecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-c----CCeEEEEeCccCc
Q 010933          173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISD  246 (497)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~----d~~i~iwd~~~~~  246 (497)
                                                    ...+... .. |...+.++.|+|||+.|+.. .    +..|+++|+....
T Consensus       222 ------------------------------~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          222 ------------------------------DRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             ------------------------------CEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             ------------------------------ceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence                                          0111111 23 45567889999999988653 2    3589999987443


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC---CeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  323 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (497)
                      .....       +..+....... +++++..+++....+   +.|..+|+.++... . .+.+..             |.
T Consensus       271 ~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~-~~~l~~-------------~~  327 (693)
T 3iuj_A          271 APLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-H-WRDLIP-------------ER  327 (693)
T ss_dssp             CCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G-CEEEEC-------------CC
T ss_pred             CceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c-cEEEec-------------CC
Confidence            22322       23344455554 666662444444443   67999999876421 0 011211             12


Q ss_pred             ccccEEEEeeCCCEEEEEe--cC--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          324 ASISDIKFANDGQHLLSRD--YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      ..+.  .|++++++|+...  ++  .|++||+.  +.....+......           .   +..+.++++++.|+...
T Consensus       328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~-----------~---~~~~~~~~d~~~l~~~~  389 (693)
T 3iuj_A          328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG-----------S---VSGFNGKHDDPALYFGF  389 (693)
T ss_dssp             SSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS-----------E---EEECCCCTTCSCEEEEE
T ss_pred             CCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc-----------e---EEeeecCCCCCEEEEEe
Confidence            2333  8999999887753  33  78889886  4444444322211           0   13567778887776555


Q ss_pred             CC----CcEEEEEcCCCC
Q 010933          400 YS----NLLRIFSHGVGS  413 (497)
Q Consensus       400 ~d----g~i~vw~~~~~~  413 (497)
                      .+    +.|+.||+.+++
T Consensus       390 ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          390 ENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             ECSSSCCEEEEECTTTCC
T ss_pred             cCCCCCCEEEEEECCCCe
Confidence            44    789999988764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.38  E-value=4.8e-10  Score=103.77  Aligned_cols=267  Identities=10%  Similarity=0.037  Sum_probs=163.6

Q ss_pred             EEEEcCCCCEEEEeec-----CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           37 AIEFDKTGDYLAVGDR-----GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        37 ~i~~sp~g~~lasg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .....|+++.+.+...     ++.|.+.|..+.+.                       +.++..-.            .+
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-----------------------~~~I~vG~------------~P   81 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------LP   81 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-----------------------EEEEECCC------------CC
Confidence            3556799998888765     67999999987643                       44444333            33


Q ss_pred             eeEEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933          112 INRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  181 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (497)
                        .+++  +||+++++.++          .++.|.+||..+.+...........                          
T Consensus        82 --~va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~--------------------------  131 (386)
T 3sjl_D           82 --NPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP--------------------------  131 (386)
T ss_dssp             --EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--------------------------
T ss_pred             --cEEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc--------------------------
Confidence              3888  78999888775          3678999999887754322110000                          


Q ss_pred             cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEEeecCCCc
Q 010933          182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSN  258 (497)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~  258 (497)
                                               +   .........+.++|||+++..+ .  ++.|.++|.. ..+....+.++   
T Consensus       132 -------------------------r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~---  179 (386)
T 3sjl_D          132 -------------------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVP---  179 (386)
T ss_dssp             -------------------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECC---
T ss_pred             -------------------------c---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECC---
Confidence                                     0   0012245568999999998876 4  6899999999 56666664322   


Q ss_pred             cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccc-cEEEEe-eCC
Q 010933          259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFA-NDG  335 (497)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s-~~g  335 (497)
                        +      +....|.+...+++.+.||.+.+.++.. ++......+.+..             -...+ ....|. ++|
T Consensus       180 --g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~-------------~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          180 --D------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------------EDEFLINHPAYSQKAG  238 (386)
T ss_dssp             --S------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------------TTSCBCSCCEEETTTT
T ss_pred             --C------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc-------------ccccccccceeEcCCC
Confidence              1      1122344436777888899999999876 4432100011110             01122 234664 678


Q ss_pred             CEEEEEecCeEEEEecCCCC-ceeeeeeec------ccccccccccCCCCCccceeEEEEcCCCCEEEEEeC--------
Q 010933          336 QHLLSRDYMNLKLWDIRMDS-TPVATFKIH------EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--------  400 (497)
Q Consensus       336 ~~l~~~~~~~i~lwd~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~--------  400 (497)
                      ++++...+|.|++.|+.... +.+..+...      .+..+.        .   ...++++++++.|+....        
T Consensus       239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~--------g---~q~~a~~~~~~~lyV~~~~~~~~~hk  307 (386)
T 3sjl_D          239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG--------G---WQQVAYHRALDRIYLLVDQRDEWRHK  307 (386)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC--------S---SSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred             cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCC--------C---cceeeECCCCCeEEEEeccccccccC
Confidence            77666556999999996422 233333200      000000        0   024888999998887653        


Q ss_pred             --CCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933          401 --SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  434 (497)
Q Consensus       401 --dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (497)
                        .+.|.+.|+.+++.+ ..+... .+++.+++++.
T Consensus       308 ~~~~~V~viD~~t~kv~-~~i~vg-~~~~~lavs~D  341 (386)
T 3sjl_D          308 TASRFVVVLDAKTGERL-AKFEMG-HEIDSINVSQD  341 (386)
T ss_dssp             SCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECSS
T ss_pred             CCCCEEEEEECCCCeEE-EEEECC-CCcceEEECCC
Confidence              257999999998665 444322 36789999984

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.36  E-value=2.6e-10  Score=104.28  Aligned_cols=233  Identities=9%  Similarity=0.000  Sum_probs=150.3

Q ss_pred             CCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        31 h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .........|+|+|+ +++++..++.|..|+.. ++                        ...+..+.            
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~------------------------~~~~~~~~------------   85 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT------------------------VDVLLDAT------------   85 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC------------------------EEEEEESC------------
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC------------------------EEEEeCCC------------
Confidence            455677899999998 56667778999999874 32                        12233333            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..+..+++  +++|+++++...++.|.+|+.. ++...+..                                       
T Consensus        86 ~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~---------------------------------------  123 (305)
T 3dr2_A           86 AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVG---------------------------------------  123 (305)
T ss_dssp             SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEEC---------------------------------------
T ss_pred             CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEe---------------------------------------
Confidence            56889999  6888866665666889999875 44222100                                       


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCccCceeeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNI  251 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~~~~~  251 (497)
                                        .........++++++.++|++.++    | .             .+.|+.||.. .++....
T Consensus       124 ------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~~~  184 (305)
T 3dr2_A          124 ------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQRM  184 (305)
T ss_dssp             ------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCEEE
T ss_pred             ------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEEEE
Confidence                              000111234667899999998886    3 2             2567777765 3333222


Q ss_pred             eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC------CeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                              . .......++|+|++ +.|+++...      +.|.+||+..+. .. ..+.+..            .....
T Consensus       185 --------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-~~~~~~~------------~~~~~  240 (305)
T 3dr2_A          185 --------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LH-DRRHFAS------------VPDGL  240 (305)
T ss_dssp             --------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EE-EEEEEEC------------CSSSC
T ss_pred             --------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-cc-CCeEEEE------------CCCCC
Confidence                    1 22456789999999 877777665      789999987643 11 0111111            01134


Q ss_pred             ccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933          326 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  404 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i  404 (497)
                      ...++++++|++.++. .+.|.+|+..  ++.+..+......                .+++|+++++.|+.++.++..
T Consensus       241 pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~~~l~  300 (305)
T 3dr2_A          241 PDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGGPCLW  300 (305)
T ss_dssp             CCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEETTEEE
T ss_pred             CCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcCCeEE
Confidence            5678999999955554 4569999984  7777777655432                589999999988888876433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.34  E-value=1.4e-09  Score=103.51  Aligned_cols=270  Identities=10%  Similarity=0.037  Sum_probs=158.0

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      .....|+|+|+|+++++...++.|++||.+++..                       ...... .            ...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-----------------------~~~~~~-~------------~~~  174 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-----------------------TTVHPG-F------------KGG  174 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-----------------------EEEEET-C------------CBC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-----------------------EEeecc-C------------CCC
Confidence            4678999999999888877789999999987643                       111111 1            223


Q ss_pred             eEEEEEecCCCCEEEEEeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          113 NRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      . ++|  +++++.|+++..++  .|.+|+..++......                                         
T Consensus       175 ~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~-----------------------------------------  210 (409)
T 3hrp_A          175 K-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI-----------------------------------------  210 (409)
T ss_dssp             B-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE-----------------------------------------
T ss_pred             c-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEe-----------------------------------------
Confidence            4 888  68888888888765  6777776554321100                                         


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe-E-
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-T-  267 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~-  267 (497)
                                      ..+.......+.+++++|++..|..+ .++.|+.||... +.. ..+...  ...+....- . 
T Consensus       211 ----------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~~-~~~~~~--~~~g~~~~~P~~  270 (409)
T 3hrp_A          211 ----------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QEV-TLIKQL--ELSGSLGTNPGP  270 (409)
T ss_dssp             ----------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CCE-EEEEEC--CCCSCCCCSSCC
T ss_pred             ----------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CCE-EEEecc--cccCCCCCCccc
Confidence                            00001134456788999954455557 888999999883 322 221000  011122222 3 


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCc--cccccccccccEEEEeeCCCEEEEEe-c-
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK--SFFTEIIASISDIKFANDGQHLLSRD-Y-  343 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~g~~l~~~~-~-  343 (497)
                      .++|+|++..++++-..++.|+.|+.... .     ..+.++.......  ......-.....++++|+|+++++-. . 
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~  344 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG  344 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCC-E-----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence            99999964266666667899999997643 1     2222211000000  00000113468899999999777755 5 


Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      +.|+.|++.. +. +..+.++.....-...............+++++++.++++-..+++|+.++++
T Consensus       345 ~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          345 YCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            8999999764 44 45555441100000000000011123689999998888888888999888753

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=5.6e-09  Score=97.83  Aligned_cols=254  Identities=10%  Similarity=-0.060  Sum_probs=143.5

Q ss_pred             EEcCCCCEEEEeec--CC---eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        39 ~~sp~g~~lasg~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      ...|+++++.+...  ..   .|.++|..+++.                       +.++..-.            .+  
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-----------------------~~~i~~g~------------~p--   69 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----------------------LGHVNGGF------------LP--   69 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE-----------------------EEEecCCC------------CC--
Confidence            44578887777653  22   889999987643                       33333222            32  


Q ss_pred             EEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933          114 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  183 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (497)
                      .+++  +||+++++.+.          .++.|.+||..+.+..........                             
T Consensus        70 ~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~-----------------------------  118 (373)
T 2mad_H           70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-----------------------------  118 (373)
T ss_pred             CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc-----------------------------
Confidence            7888  78999999886          367899999986654332111000                             


Q ss_pred             cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEE-eecCCCcc
Q 010933          184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNM  259 (497)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~  259 (497)
                                             ..  ..+......+.++|+|++|+.+ .  ++.|.++| . .++.... +...    
T Consensus       119 -----------------------~~--~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~~----  167 (373)
T 2mad_H          119 -----------------------PR--FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSSP----  167 (373)
T ss_pred             -----------------------cc--cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCCC----
Confidence                                   00  0011234578999999999886 3  57899999 7 5555543 3211    


Q ss_pred             CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-E
Q 010933          260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L  338 (497)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l  338 (497)
                             .++.+.|++...+++.+.||.+.++|. +++....    .....       .+.+.........+.+++.. +
T Consensus       168 -------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~-------~~~~~~p~~~~~~~~~~~~~~~  228 (373)
T 2mad_H          168 -------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA-------MLTAAQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             -------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc-------cccCCcceeecceeEecCCEEE
Confidence                   124556766567777888999999999 7654311    10000       00000011233556676554 3


Q ss_pred             EEEecCeEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----------CCcEEEE
Q 010933          339 LSRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIF  407 (497)
Q Consensus       339 ~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----------dg~i~vw  407 (497)
                      +....+.+.+.|+.... +.+..+.........   .  .-.-.....+.++||++.|+++..          ++.|.++
T Consensus       229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~---~--~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          229 WPVYSGKILQADISAAGATNKAPIDALSGGRKA---D--TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             EEcCCceEEEEeccCCcceEeeeeeecCCcccc---c--ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence            44444899999986421 222222211100000   0  000000123788999888877653          3579999


Q ss_pred             EcCCCCcc
Q 010933          408 SHGVGSAG  415 (497)
Q Consensus       408 ~~~~~~~~  415 (497)
                      |..+++.+
T Consensus       304 D~~t~~vv  311 (373)
T 2mad_H          304 TGLVGQTS  311 (373)
T ss_pred             ECCCCEEE
Confidence            99887443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.31  E-value=4e-11  Score=111.39  Aligned_cols=189  Identities=10%  Similarity=0.081  Sum_probs=126.0

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ..++.+++++.+.++++|+.+ .+++|+++..+.     -                    +..-..++.......+.. |
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~-----~--------------------~~~~~~~~~~~~~~~lp~-V   90 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRD-----H--------------------ITSDSTPLTFKWEKEIPD-V   90 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHH-----H--------------------HHSSSCCCCCSEEEECTT-E
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhh-----h--------------------hccccccccceEEeeCCC-e
Confidence            479999999999999999987 577799865321     0                    000000011111122236 9


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      +.|+|    ++.+|+++ .++.|++||+.+......                                            
T Consensus        91 ~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~--------------------------------------------  121 (388)
T 1xip_A           91 IFVCF----HGDQVLVS-TRNALYSLDLEELSEFRT--------------------------------------------  121 (388)
T ss_dssp             EEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEE--------------------------------------------
T ss_pred             eEEEE----CCCEEEEE-cCCcEEEEEchhhhccCc--------------------------------------------
Confidence            99999    67788888 889999999986542110                                            


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  271 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (497)
                                       ...|...+.++.+.+..  ++++ .||.|.+||+. .+....           +...|++++|
T Consensus       122 -----------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~-~~~~~~-----------~~~~Vs~v~W  170 (388)
T 1xip_A          122 -----------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR-TKSTKQ-----------LAQNVTSFDV  170 (388)
T ss_dssp             -----------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETT-TCCEEE-----------EEESEEEEEE
T ss_pred             -----------------cceeecceeeEEecCCC--EEEEECCCCEEEEEcc-CCcccc-----------ccCCceEEEE
Confidence                             02344557777765542  7777 99999999998 343322           3468999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc---cccccccEEEEeeCCCEEEE
Q 010933          272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT---EIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~~  340 (497)
                      +|.|   ++.|..||.+++|+...++...+  +.+.. .      ..+.   +|...+.++.|.+++.++++
T Consensus       171 SpkG---~~vg~~dg~i~~~~~~~~~~~~k--~~I~~-P------p~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          171 TNSQ---LAVLLKDRSFQSFAWRNGEMEKQ--FEFSL-P------SELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             CSSE---EEEEETTSCEEEEEEETTEEEEE--EEECC-C------HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCc---eEEEEcCCcEEEEcCCCcccccc--ceecC-C------cccccccCCCeeEEEEEEecCCeEEEE
Confidence            9998   67899999999998877652100  22211 0      0011   24578999999999999887

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=1.9e-09  Score=99.74  Aligned_cols=139  Identities=12%  Similarity=0.069  Sum_probs=85.3

Q ss_pred             EEEe-CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-----
Q 010933          269 AEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----  342 (497)
Q Consensus       269 ~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-----  342 (497)
                      ..|. ++| + ++..+.+|.+++.|+.+.....  .+.+..-... ....  .-..+....++++++++.++...     
T Consensus       231 ~~~~~~dG-~-~~~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~-~~~~--g~~p~g~q~~a~~~~~~~lyV~~~~~~~  303 (386)
T 3sjl_D          231 PAYSQKAG-R-LVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEA-ERAD--GWRPGGWQQVAYHRALDRIYLLVDQRDE  303 (386)
T ss_dssp             CEEETTTT-E-EEEEBTTSEEEEEECTTSSCEE--CCCEESSCHH-HHHT--TEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             ceeEcCCC-c-EEEEeCCCEEEEEECCCCccee--ecceeccccc-cccc--cccCCCcceeeECCCCCeEEEEeccccc
Confidence            3665 566 4 4446778999999997654210  0111100000 0000  00113456788899998887752     


Q ss_pred             ------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEE-eCCCcEEEEEcCCCCc
Q 010933          343 ------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSHGVGSA  414 (497)
Q Consensus       343 ------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg~i~vw~~~~~~~  414 (497)
                            .+.|.++|+.+ .+.+.++......                +++++++|++ +|++. ..++.|.++|..+++.
T Consensus       304 ~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          304 WRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             TCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             cccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence                  15799999997 8888888765432                5899999997 66664 4589999999999854


Q ss_pred             ceEEEeccCcceeeeEeec
Q 010933          415 GGITVEAGKNENRKPILQA  433 (497)
Q Consensus       415 ~~~~~~~~~~~v~~~~~~~  433 (497)
                      + .++..-.. -+.+.+++
T Consensus       367 ~-~~i~~~~~-p~~l~~s~  383 (386)
T 3sjl_D          367 L-RSVNQLGH-GPQVITTA  383 (386)
T ss_dssp             E-EEECCCCS-SCCEEEEC
T ss_pred             E-EEecCCCC-CceeEECC
Confidence            4 55543322 23445544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=2.7e-09  Score=97.03  Aligned_cols=180  Identities=8%  Similarity=0.082  Sum_probs=112.8

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC--------
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------  285 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------  285 (497)
                      ...+.+++++++|+++++. ++.|.+||.+ .++...+....   .......+..++++|+| +++++...+        
T Consensus        53 ~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~-~g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~  126 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVATI-GTKFCALNWK-EQSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLE  126 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEEE-TTEEEEEETT-TTEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCC
T ss_pred             CCceEEEEECCCCCEEEEE-CCeEEEEECC-CCcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecCCccccccccc
Confidence            3468899999999955544 5689999987 44433322111   11123457899999999 766544321        


Q ss_pred             -CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecC-CCCcee--e
Q 010933          286 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR-MDSTPV--A  359 (497)
Q Consensus       286 -g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~-~~~~~~--~  359 (497)
                       ..-.+|.+.......   .....              ....+.++|+|+++.|+.++ . +.|.+|++. ..+...  +
T Consensus       127 ~~~~~l~~~d~~g~~~---~~~~~--------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~  189 (297)
T 3g4e_A          127 RHQGALYSLFPDHHVK---KYFDQ--------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR  189 (297)
T ss_dssp             TTCEEEEEECTTSCEE---EEEEE--------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE
T ss_pred             CCCcEEEEEECCCCEE---EEeec--------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE
Confidence             223444443221110   11111              13467899999999876653 3 899999974 224321  1


Q ss_pred             ee---eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEee
Q 010933          360 TF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  432 (497)
Q Consensus       360 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  432 (497)
                      .+   ......               ...++++++|++.++...++.|.+||.++++.+ ..+..+...+.+++|.
T Consensus       190 ~~~~~~~~~~~---------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~-~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          190 SVYKLEKEEQI---------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL-QTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEECCGGGCE---------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE-EEEECSSSBEEEEEEE
T ss_pred             EEEECCCCCCC---------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE-EEEECCCCCceEEEEe
Confidence            11   111111               157999999998888888889999999877544 6677776778888997

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.28  E-value=3.7e-09  Score=97.49  Aligned_cols=228  Identities=11%  Similarity=0.021  Sum_probs=140.9

Q ss_pred             ceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        34 ~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      ......|+|++ .+++++..++.|..||..+++.                        ..+. ..            ..+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~v   92 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK------------------------TVHA-LP------------FMG   92 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------------------------EEEE-CS------------SCE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEE-CC------------Ccc
Confidence            34678999975 4556666788999999877532                        1111 12            558


Q ss_pred             eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933          113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  192 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (497)
                      .+++|  +++++++++. .++ |.+||..+++...+.....                                       
T Consensus        93 ~~i~~--~~dg~l~v~~-~~g-l~~~d~~~g~~~~~~~~~~---------------------------------------  129 (326)
T 2ghs_A           93 SALAK--ISDSKQLIAS-DDG-LFLRDTATGVLTLHAELES---------------------------------------  129 (326)
T ss_dssp             EEEEE--EETTEEEEEE-TTE-EEEEETTTCCEEEEECSST---------------------------------------
T ss_pred             eEEEE--eCCCeEEEEE-CCC-EEEEECCCCcEEEEeeCCC---------------------------------------
Confidence            89999  4677766654 444 8889987766432210000                                       


Q ss_pred             EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC------CeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                        ......++++.++|+|+++++. .+      +.|+.++   .++....        ......
T Consensus       130 ------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~~~~--------~~~~~~  180 (326)
T 2ghs_A          130 ------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKVTKL--------FADISI  180 (326)
T ss_dssp             ------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEEEEE--------EEEESS
T ss_pred             ------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcEEEe--------eCCCcc
Confidence                              0112357889999999977765 32      4555555   3433322        112234


Q ss_pred             eEEEEEeCCCCcEEEEE-eCCCeEEEEEcc--CC-cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          266 ITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      ...++|+|++ +.|+.+ +.++.|.+||+.  ++ .....  +.+..          +.........++++++|.+.++.
T Consensus       181 ~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--~~~~~----------~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          181 PNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKA--EVFID----------STGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             EEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCC--EEEEE----------CTTSSSEEEEEEECTTSCEEEEE
T ss_pred             cCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccCc--eEEEE----------CCCCCCCCCeeEECCCCCEEEEE
Confidence            6789999999 766544 557899999986  44 32110  11111          00112345789999999877776


Q ss_pred             e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEEeC
Q 010933          342 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  400 (497)
Q Consensus       342 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~  400 (497)
                      . .+.|..||..  ++.+..+..+...+               ++++|+ ++++.|+.++.
T Consensus       248 ~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          248 WGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred             eCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence            4 4889999983  66677666544322               689998 88877765544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=2.9e-10  Score=105.70  Aligned_cols=193  Identities=7%  Similarity=0.027  Sum_probs=124.8

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+++.+++  ++...++++|+.++ +.+|++...+..... ..  .                                  
T Consensus        38 ~~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~-~~--~----------------------------------   77 (388)
T 1xip_A           38 ASLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITS-DS--T----------------------------------   77 (388)
T ss_dssp             SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHS-SS--C----------------------------------
T ss_pred             ccccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhcc-cc--c----------------------------------
Confidence            45889999  57888999999985 566998765411100 00  0                                  


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                  ..++...  ..+.. |+.++|  +++.|+++.++.|++||++...+...        ...|+..+.++
T Consensus        78 ------------~~~~~~~--~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i  132 (388)
T 1xip_A           78 ------------PLTFKWE--KEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQL  132 (388)
T ss_dssp             ------------CCCCSEE--EECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEE
T ss_pred             ------------cccceEE--eeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCc--------cceeecceeeE
Confidence                        0011111  23555 999999  99999999889999999984432221        33456678877


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  349 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lw  349 (497)
                      .+.+.   .+++++.||.|.+||+.++...    ..                 ...|++++|||+| +.+...+|.+++|
T Consensus       133 ~~~~p---~~av~~~dG~L~v~dl~~~~~~----~~-----------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~  187 (388)
T 1xip_A          133 KNVNN---TLVILNSVNDLSALDLRTKSTK----QL-----------------AQNVTSFDVTNSQ-LAVLLKDRSFQSF  187 (388)
T ss_dssp             EECSS---EEEEEETTSEEEEEETTTCCEE----EE-----------------EESEEEEEECSSE-EEEEETTSCEEEE
T ss_pred             EecCC---CEEEEECCCCEEEEEccCCccc----cc-----------------cCCceEEEEcCCc-eEEEEcCCcEEEE
Confidence            76654   3888999999999999976532    11                 2469999999999 4444467999999


Q ss_pred             ecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          350 DIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       350 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      +... ...  ..++.......      .+.+.-+.+.++.|.++++++++-+
T Consensus       188 ~~~~-~~~~~k~~I~~Pp~~~------~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          188 AWRN-GEMEKQFEFSLPSELE------ELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEET-TEEEEEEEECCCHHHH------TSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCC-ccccccceecCCcccc------cccCCCeeEEEEEEecCCeEEEEEc
Confidence            8874 443  44452211000      0000012247999999999988643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=2.9e-09  Score=97.22  Aligned_cols=233  Identities=11%  Similarity=-0.000  Sum_probs=144.4

Q ss_pred             CCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933          213 HDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  290 (497)
Q Consensus       213 h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  290 (497)
                      .........|+|+|+ +++++ .++.|..|+.. +. . ..       +..+...+..++++++| +++++...++.|.+
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~-~~-------~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V-DV-------LLDATAFTNGNAVDAQQ-RLVHCEHGRRAITR  111 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E-EE-------EEESCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E-EE-------EeCCCCccceeeECCCC-CEEEEECCCCEEEE
Confidence            344567899999998 55667 88999999875 33 2 22       22345678999999999 76666556688999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE----Ee--------------cCeEEEEecC
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD--------------YMNLKLWDIR  352 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----~~--------------~~~i~lwd~~  352 (497)
                      ||.. ++.     ..+......        .....++.++++|+|+++++    |.              .+.|..||..
T Consensus       112 ~~~~-g~~-----~~~~~~~~~--------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          112 SDAD-GQA-----HLLVGRYAG--------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             ECTT-SCE-----EEEECEETT--------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             ECCC-CCE-----EEEEeccCC--------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            9975 432     111110000        00134778999999998886    32              1456677765


Q ss_pred             CCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC------CcEEEEEcCCCCcce-EEE-eccCc
Q 010933          353 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGG-ITV-EAGKN  424 (497)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~vw~~~~~~~~~-~~~-~~~~~  424 (497)
                      + ++..... .....                ..++|+||++.|+.+...      +.|++|++..+.... ..+ .....
T Consensus       178 ~-g~~~~~~-~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          178 G-SPLQRMA-DLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             S-CCCEEEE-EESSE----------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             C-CcEEEEe-cCCCC----------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence            3 4433222 21111                579999999988877665      789999987653110 111 11122


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      ....+++.+  ++.      +..+..++..+|...............+.+++|+|+++.|.+++.++++.+.
T Consensus       240 ~pdgi~~d~--~G~------lwv~~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          240 LPDGFCVDR--GGW------LWSSSGTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             CCCSEEECT--TSC------EEECCSSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             CCCeEEECC--CCC------EEEecCCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            334555554  333      3334444446665444333333333468899999999999999988888764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.25  E-value=2.1e-08  Score=91.05  Aligned_cols=237  Identities=8%  Similarity=-0.018  Sum_probs=153.8

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...+.+++++++|++.++...++.|..||.. ++.                     . ...+....            ..
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~---------------------~-~~~~~~~~------------~~  105 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF---------------------T-EYPLPQPD------------SG  105 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------------------E-EEECSSTT------------CC
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe---------------------E-EecCCCCC------------CC
Confidence            3578899999999988776667889999876 421                     1 01111122            45


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      +..+++  ++++.++++...++.|..|+.. ++.....                                          
T Consensus       106 ~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~------------------------------------------  140 (300)
T 2qc5_A          106 PYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD------------------------------------------  140 (300)
T ss_dssp             EEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE------------------------------------------
T ss_pred             CccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc------------------------------------------
Confidence            788998  6778777777667889888876 4422110                                          


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                        .......+..+++.++|++.++. .++.|..|+.. .. .... .     .......+..++
T Consensus       141 ------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~-----~~~~~~~~~~i~  194 (300)
T 2qc5_A          141 ------------------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY-P-----LPTNAAAPVGIT  194 (300)
T ss_dssp             ------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE-E-----CSSTTCCEEEEE
T ss_pred             ------------------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe-e-----CCCCCCCcceEE
Confidence                              02233467889999999977777 68899999984 33 2222 1     233446789999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw  349 (497)
                      +++++ .++++....+.|.+||. +++..     .+..           ..+...+.+++++++|++.++.. .+.|..|
T Consensus       195 ~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  256 (300)
T 2qc5_A          195 SGNDG-ALWFVEIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQIGRI  256 (300)
T ss_dssp             ECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             ECCCC-CEEEEccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence            99998 77776666788999998 44322     1111           01124578899999998666664 4899999


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      |..  ++.. .+.......          .   +.+++++++|+++++.. . .|..++.+
T Consensus       257 ~~~--g~~~-~~~~~~~~~----------~---~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          257 TND--NTIQ-EYQLQTENA----------E---PHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CTT--SCEE-EEECCSTTC----------C---CCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CCC--CcEE-EEECCccCC----------c---cceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            983  4322 332211100          1   15799999998666555 4 77777653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=1.2e-09  Score=101.60  Aligned_cols=275  Identities=7%  Similarity=-0.015  Sum_probs=158.4

Q ss_pred             cceEEEEEcCCCCEEEEee--cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ..+..++++|+|+++++..  .++.++||.+.+++..               ..|...  ....+|-            .
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---------------~~p~~~--~~~~~~~------------~   67 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---------------PFPPQS--GNAIITF------------D   67 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---------------ESCCCC--SSCCCCC------------S
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---------------cCCCcc--cCcccce------------e
Confidence            5788999999999988864  2343667766544220               011100  1111233            6


Q ss_pred             ceeEEEEEecCCCCEEEEEeC-----CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933          111 KINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  185 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (497)
                      .+..+++  +++++++++-..     ++.|.+||+.+++...........                              
T Consensus        68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~------------------------------  115 (343)
T 2qe8_A           68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI------------------------------  115 (343)
T ss_dssp             CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT------------------------------
T ss_pred             EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh------------------------------
Confidence            7899999  677765555433     578999999877644322111000                              


Q ss_pred             cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-----cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933          186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMD  260 (497)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~  260 (497)
                                               ..+...+..+++++++..+..+     .++.|.+||.. .++...+       +.
T Consensus       116 -------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~-------~~  162 (343)
T 2qe8_A          116 -------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARV-------LQ  162 (343)
T ss_dssp             -------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEE-------CT
T ss_pred             -------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEE-------ec
Confidence                                     1233456789999865555443     36799999998 4555444       22


Q ss_pred             CCCCCeE-EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933          261 DLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       261 ~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      +|..... ...+.++| ..+.+.+.++.++.|.                               ..++.++|+|+|+.|+
T Consensus       163 ~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~-------------------------------~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          163 GYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH-------------------------------LGVNGIVLDAENEWLY  210 (343)
T ss_dssp             TCTTTSCCSCCCEETT-EECBEECTTSCEECCC-------------------------------CCEEEEEECTTSCEEE
T ss_pred             CCCcccccccceeECC-EEEEeccCCCceecee-------------------------------cccceeEeccCCCEEE
Confidence            2211100 13345566 6677677777665442                               1257799999999888


Q ss_pred             EEec--CeEEEEecCC--CCc-----eee--eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          340 SRDY--MNLKLWDIRM--DST-----PVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       340 ~~~~--~~i~lwd~~~--~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      .++.  ..+..++...  .+.     ...  ...++....               ..++++++|.++++...++.|.+||
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p---------------dgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC---------------DGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC---------------SCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC---------------ceEEECCCCCEEEEccCCCeEEEEE
Confidence            8754  4555554321  011     000  111121110               3799999999999999999999999


Q ss_pred             cCCCCcceEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          409 HGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       409 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ..+++ ....... +......+++.+  ++.+     +++.+..+. .+|
T Consensus       276 ~~~G~-~~~~~~~~~~~~p~~va~~~--~g~l-----~v~~~~~~~~~~f  317 (343)
T 2qe8_A          276 SADRA-YKLLVTDEKLSWTDSFNFGS--DGYL-----YFDCNQLHHSAPL  317 (343)
T ss_dssp             TTTTE-EEEEEECGGGSCEEEEEECT--TSCE-----EEEECCGGGSGGG
T ss_pred             CCCCC-EEEEEECCceecCCeeEECC--CCcE-----EEEeCcccccccc
Confidence            85553 2222221 234567788876  4444     555544433 444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.24  E-value=6.6e-09  Score=97.93  Aligned_cols=297  Identities=9%  Similarity=0.048  Sum_probs=174.4

Q ss_pred             CCCCEEEEeecC-----CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           42 KTGDYLAVGDRG-----GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        42 p~g~~lasg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      |+++++++....     +.|.++|..+.+.                       +.++..-.            .+  .++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-----------------------v~~I~vG~------------~P--gia  124 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI-----------------------LGMTDGGF------------LP--HPV  124 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC--EEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEE-----------------------EEEEECCC------------CC--ceE
Confidence            577766665542     6999999988643                       44444332            44  788


Q ss_pred             EEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          117 WCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       117 ~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                      +  +||+++++.+.          .++.|.++|..+++...........      .......+.....+++.++++.+..
T Consensus       125 ~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------r~~~g~~P~~~~~spDGk~lyV~n~  196 (426)
T 3c75_H          125 A--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------RFLVGTYQWMNALTPDNKNLLFYQF  196 (426)
T ss_dssp             E--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGSEECTTSSEEEEEEC
T ss_pred             E--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc------ccccCCCcceEEEcCCCCEEEEEec
Confidence            8  78999888876          4679999999988765543221000      0000112344555667777666655


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  264 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (497)
                      ...+.+.+.|.....   .+..+..+.     +....|++ +.+++. .||.+.+.+.. .++......   ..+.....
T Consensus       197 ~~~~~VsVID~~t~k---vv~~I~v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~---~~~~v~~~  264 (426)
T 3c75_H          197 SPAPAVGVVDLEGKT---FDRMLDVPD-----CYHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNT---EVFHTEDE  264 (426)
T ss_dssp             SSSCEEEEEETTTTE---EEEEEECCS-----EEEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEEC---CCCSCTTS
T ss_pred             CCCCeEEEEECCCCe---EEEEEEcCC-----ceeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEee---eeeccCCC
Confidence            446678888887542   333321111     12223333 333443 67777777764 343332110   00111111


Q ss_pred             Ce-EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-
Q 010933          265 VI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  342 (497)
Q Consensus       265 ~i-~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-  342 (497)
                      ++ ..+.+.+++ ..++..+..+.+.+.|+........  ..+....   ...............++++|+++.+++.. 
T Consensus       265 p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~--~~~~~~~---~~~i~~g~~p~g~~~va~s~dg~rlyVa~~  338 (426)
T 3c75_H          265 LLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFR--APIEALT---EAERADDWRPGGWQQTAYHRQSDRIYLLVD  338 (426)
T ss_dssp             CBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEEC--CCEESSC---TTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred             ceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEe--eeeeecc---ccccccccccCCceeeEEcCCCCEEEEEec
Confidence            11 235678888 6777777889999999876532110  1111000   00000000012334578999998777652 


Q ss_pred             ----------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCcEEEEEcC
Q 010933          343 ----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHG  410 (497)
Q Consensus       343 ----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~vw~~~  410 (497)
                                .+.|.++|+.+ .+.+.++......                ..+.|+|||+ +|++.. .++.|.++|+.
T Consensus       339 ~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          339 QRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             ECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             ccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence                      25799999997 8888888765543                5899999999 888888 59999999999


Q ss_pred             CCCcceEEE
Q 010933          411 VGSAGGITV  419 (497)
Q Consensus       411 ~~~~~~~~~  419 (497)
                      +++.+ ..+
T Consensus       402 t~kvv-~tI  409 (426)
T 3c75_H          402 TGEEL-RSV  409 (426)
T ss_dssp             TCCEE-EEE
T ss_pred             CCCEE-EEe
Confidence            98555 443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.23  E-value=6.6e-09  Score=95.77  Aligned_cols=158  Identities=14%  Similarity=0.139  Sum_probs=95.7

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC------CCeE
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------RGFV  288 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i  288 (497)
                      ..+.++.++++|+++++..+ .|.+||.. .++........   .......+..++++|+| +++++...      .+.|
T Consensus        90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~-~g~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred             CcceEEEEeCCCeEEEEECC-CEEEEECC-CCcEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence            46888999999987776644 49999987 44433321110   01123468899999999 76655432      2455


Q ss_pred             EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecC-CCC-cee--eeee
Q 010933          289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR-MDS-TPV--ATFK  362 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~-~~~-~~~--~~~~  362 (497)
                      ..+|  +++..    .....              ....+.++|+|+|+.++.++  .+.|.+||+. ..+ ...  ..+.
T Consensus       164 ~~~~--~g~~~----~~~~~--------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~  223 (326)
T 2ghs_A          164 YHVA--KGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI  223 (326)
T ss_dssp             EEEE--TTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred             EEEe--CCcEE----EeeCC--------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE
Confidence            5555  34321    11111              13457899999999776654  3899999985 113 211  1121


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      ......          .  ....++++++|.++++...++.|.+|+..
T Consensus       224 ~~~~~~----------~--~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          224 DSTGIK----------G--GMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             ECTTSS----------S--EEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             ECCCCC----------C--CCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            110000          0  01479999999988877777899999973

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=6.9e-08  Score=89.96  Aligned_cols=172  Identities=13%  Similarity=0.106  Sum_probs=97.6

Q ss_pred             eEEEeCCCCCEEEEEc--------------------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--eCCC
Q 010933          218 NSISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIY  275 (497)
Q Consensus       218 ~~~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~  275 (497)
                      +.+.|+|+++.+++++                    +.+|.+||+. .++..+.+++.     ........+.|  +|++
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg-----~~g~~P~~i~f~~~Pdg  264 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLG-----EENRMALELRPLHDPTK  264 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESC-----TTEEEEEEEEECSSTTC
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecC-----CCCCccceeEeeECCCC
Confidence            4577899999888873                    7899999999 46666665322     12233456666  9999


Q ss_pred             CcEEEEEe------CCCeEEEEEccCCcccccccceecccccccCC-c----cccccccccccEEEEeeCCCEEEEEe--
Q 010933          276 CNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGS-K----SFFTEIIASISDIKFANDGQHLLSRD--  342 (497)
Q Consensus       276 ~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~i~~~~~s~~g~~l~~~~--  342 (497)
                       ++++++.      .+++|.+|....++..  ..+++......... .    ..+.+-......+.+||||++|.++.  
T Consensus       265 -~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          265 -LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred             -CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence             6665555      5678888777654321  11111110000000 0    00111124578899999999999885  


Q ss_pred             cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933          343 YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       343 ~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      .+.|.+||+...+  +.+..+...... .......+....-.-..+.++|||++|+++.
T Consensus       342 ~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          342 IGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            3999999986322  344444332100 0000000000000004799999999999888

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.10  E-value=5e-08  Score=92.69  Aligned_cols=236  Identities=6%  Similarity=-0.077  Sum_probs=138.8

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC--eEEEE
Q 010933          215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLV  291 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~v~  291 (497)
                      .....++|+++++++++. .++.|++||.. .+....+.       .. ..... ++|+|++ ..|+++..++  .|.++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~-~g~~~~~~-------~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~  199 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVD-DNKVTTVH-------PG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVY  199 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETT-TTEEEEEE-------ET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECC-CCEEEEee-------cc-CCCCc-eeEecCC-CcEEEEecCCCceEEEE
Confidence            467889999999977777 78999999998 45544432       11 22233 8999999 8888888765  78888


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeeccccccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                      |...+...    ..+.. ..        ........+++++|++..|+.+. ++.|+.||... +. ...+......-. 
T Consensus       200 d~~~~~~~----~~~g~-~~--------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~-~~~~~~~~~~g~-  263 (409)
T 3hrp_A          200 MKASGWAP----TRIGQ-LG--------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QE-VTLIKQLELSGS-  263 (409)
T ss_dssp             EGGGTTCE----EEEEE-CC--------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CC-EEEEEECCCCSC-
T ss_pred             EcCCCcee----EEeee-cc--------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CC-EEEEecccccCC-
Confidence            88765321    11100 00        00124578899999544444454 38899999875 33 233311100000 


Q ss_pred             ccccCCCCCcccee-EEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccC---------------cceeeeEeec
Q 010933          371 LCDLYNNDSIFDKF-ECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---------------NENRKPILQA  433 (497)
Q Consensus       371 ~~~~~~~~~~~~~~-~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~---------------~~v~~~~~~~  433 (497)
                              ....-. .++|+|+ +.++++-..++.|+.|+....   ...+.++.               .....+++.+
T Consensus       264 --------~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          264 --------LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             --------CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             --------CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence                    000002 7999995 666666677899999997643   23333332               3356778877


Q ss_pred             CCCcccccccceeEee-ccCc-eecC-CCCCccccccc---------------CCCeEEEEEecCCCEEEEEeCC-ceEE
Q 010933          434 APRARRSSLSNLTRGL-YRQA-HENS-SSGHHELSYNL---------------SSKLLHLAWHPTTNLIACANGN-SLFF  494 (497)
Q Consensus       434 ~~~~~~~~~~~l~~~~-~d~~-~iw~-~~~~~~~~~~~---------------~~~i~~l~~~p~~~~la~~~~~-~~~i  494 (497)
                        ++.+     .++-. ..+. ..|. .........+.               -.....|+++|+|.++++-..+ .+..
T Consensus       333 --dG~l-----yvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          333 --DGNF-----YIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             --TCCE-----EEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred             --CCCE-----EEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence              4444     44433 3334 5553 33333222222               2457899999997666655533 3444


Q ss_pred             E
Q 010933          495 H  495 (497)
Q Consensus       495 ~  495 (497)
                      +
T Consensus       406 i  406 (409)
T 3hrp_A          406 Y  406 (409)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.09  E-value=2e-08  Score=93.28  Aligned_cols=222  Identities=10%  Similarity=0.018  Sum_probs=131.5

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe--
Q 010933          212 AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--  283 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--  283 (497)
                      .|...+..+++.++++++++. .     +..|.+||.. .++....+.++.. ...+...+..+++++++...+++-.  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~-tg~~~~~~~~~~~-~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL-NNQLSRVIYLPPP-ITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT-TTEEEEEEECCTT-TSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC-CCeEEEEEECChh-hcccccccceEEEecCCCEEEEEcCcc
Confidence            456688999999999877765 4     6899999998 5555555443211 1223456689999986514445544  


Q ss_pred             -CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee
Q 010933          284 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       284 -~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~  361 (497)
                       .++.|.+||+.+++..    +.+..|...           . .....+.++|..+.+.+ ++.++.|..          
T Consensus       142 ~~~~~i~v~d~~~g~~~----r~~~~~~~~-----------~-~~~~~~~~~g~~~~~~~~~g~~~~~~~----------  195 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAA----RVLQGYPGI-----------A-PEDIDLVIDGVPVQIGQPDGTVIRPHL----------  195 (343)
T ss_dssp             GGGCEEEEEETTTCCEE----EECTTCTTT-----------S-CCSCCCEETTEECBEECTTSCEECCCC----------
T ss_pred             CCCCeEEEEECCCCCEE----EEecCCCcc-----------c-ccccceeECCEEEEeccCCCceeceec----------
Confidence             5789999999877543    333221000           0 00133455666555543 355544321          


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-cEEEEEcC---CCC----cc--eEEEeccCcceeeeEe
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHG---VGS----AG--GITVEAGKNENRKPIL  431 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~vw~~~---~~~----~~--~~~~~~~~~~v~~~~~  431 (497)
                          ..                ..++|+||++.|+.+..++ .++.++..   .+.    ..  .....++......+++
T Consensus       196 ----~~----------------~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          196 ----GV----------------NGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ----CE----------------EEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ----cc----------------ceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                11                4799999999998887766 45444432   110    00  0122244445567788


Q ss_pred             ecCCCcccccccceeEeeccCc-eecCC-CCCcccccc--cCCCeEEEEEecCCCEEEEEe
Q 010933          432 QAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYN--LSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       432 ~~~~~~~~~~~~~l~~~~~d~~-~iw~~-~~~~~~~~~--~~~~i~~l~~~p~~~~la~~~  488 (497)
                      .+  ++.+     .++....+. .+|.. .+.......  .......++|.+++.++++.+
T Consensus       256 d~--~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          256 DK--DHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             CT--TCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             CC--CCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            76  4544     555555555 78855 332222222  235688999999998877766

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.05  E-value=2.7e-08  Score=92.19  Aligned_cols=79  Identities=11%  Similarity=0.029  Sum_probs=58.9

Q ss_pred             EEEEeeCCCEEEEE-e-c--------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCE-EE
Q 010933          328 DIKFANDGQHLLSR-D-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FA  396 (497)
Q Consensus       328 ~~~~s~~g~~l~~~-~-~--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~  396 (497)
                      .++++|+++.++.+ . .        +.+.++|+.+ .+.+.++......                ..++|+|||++ ++
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNY  330 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEE
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEE
Confidence            37899999888764 3 2        3566999997 8888888766543                58999999984 55


Q ss_pred             EEe-CCCcEEEEEcCCCCcceEEEeccCc
Q 010933          397 TGS-YSNLLRIFSHGVGSAGGITVEAGKN  424 (497)
Q Consensus       397 s~~-~dg~i~vw~~~~~~~~~~~~~~~~~  424 (497)
                      +.. .++.|.++|+.+++.+ .++.....
T Consensus       331 a~~~~~~~VsVID~~t~kvv-~~I~vg~~  358 (368)
T 1mda_H          331 ANSAGTEVLDIYDAASDQDQ-SSVELDKG  358 (368)
T ss_dssp             EEETTTTEEEEEESSSCEEE-EECCCCSC
T ss_pred             EccCCCCeEEEEECCCCcEE-EEEECCCC
Confidence            666 5999999999998444 55554433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.02  E-value=2.2e-08  Score=102.29  Aligned_cols=238  Identities=11%  Similarity=0.021  Sum_probs=142.7

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933          211 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  284 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  284 (497)
                      .+|...+..++|||||+.|+.+      +...|++||+. +++.....      +..  .....++|+ |+ +.|+.++.
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~-tg~~~~~~------~~~--~k~~~~~Ws-Dg-~~l~y~~~  193 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE-SKQPLETP------LKD--VKFSGISWL-GN-EGFFYSSY  193 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT-TCSEEEEE------EEE--EESCCCEEE-TT-TEEEEEES
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC-CCCCCccc------cCC--ceeccEEEe-CC-CEEEEEEe
Confidence            3455678889999999999864      23579999999 44433320      111  113567899 99 88888877


Q ss_pred             CC-------------eEEEEEccCCcccccccceecccccccCCcccccc-ccccccEEEEeeCCCEEEEE-e---c-Ce
Q 010933          285 RG-------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR-D---Y-MN  345 (497)
Q Consensus       285 dg-------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~-~---~-~~  345 (497)
                      +.             .|++|++.++....  ..++..           .. |......+.|+|||++|+.. .   . +.
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  260 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNR  260 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGC--EEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccc--eEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence            74             49999987754321  122322           11 22346788999999988764 2   2 58


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCC---CcEEEEEcCCCCc-ceEEEe
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYS---NLLRIFSHGVGSA-GGITVE  420 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~d---g~i~vw~~~~~~~-~~~~~~  420 (497)
                      |+++|+.........+..+....               ... |+++|..|+ ....+   +.|..+++.++.. ....+.
T Consensus       261 i~~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~  324 (693)
T 3iuj_A          261 LYVKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI  324 (693)
T ss_dssp             EEEEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EEEEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence            99999976333455555554432               233 667666555 44433   6799999987643 124566


Q ss_pred             ccCcceeeeEeecCCCcccccccceeEeeccCc-ee--cCCC-CCcccc-cccCCCeEEEEEecCCCEEEEEeC-----C
Q 010933          421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HE--NSSS-GHHELS-YNLSSKLLHLAWHPTTNLIACANG-----N  490 (497)
Q Consensus       421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~i--w~~~-~~~~~~-~~~~~~i~~l~~~p~~~~la~~~~-----~  490 (497)
                      .|...+.  .+++  ++..    .+++...++. .+  |... ...... ......+..++++|+++.|+....     .
T Consensus       325 ~~~~~~~--~~s~--~g~~----lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~  396 (693)
T 3iuj_A          325 PERQQVL--TVHS--GSGY----LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP  396 (693)
T ss_dssp             CCCSSCE--EEEE--ETTE----EEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred             cCCCCEE--EEEE--ECCE----EEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCC
Confidence            6665554  6666  3333    1344444544 44  4332 222211 233456778888999887766543     4


Q ss_pred             ceEEEe
Q 010933          491 SLFFHY  496 (497)
Q Consensus       491 ~~~i~~  496 (497)
                      .++.|+
T Consensus       397 ~l~~~d  402 (693)
T 3iuj_A          397 TLYRFE  402 (693)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            566664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.97  E-value=3.8e-07  Score=85.98  Aligned_cols=231  Identities=10%  Similarity=0.027  Sum_probs=132.5

Q ss_pred             EEEeCCCCCEEEEE-c----------CCeEEEEeCccCceeeEEeecC-CCccCCCCCCeEEEEEeCCCCcEEEEEeC--
Q 010933          219 SISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSS--  284 (497)
Q Consensus       219 ~~~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  284 (497)
                      .+.++|||+.++.+ .          ++.|.++|.. ..+....+.+. +... ........+.++|+| ++++++..  
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v~g~~r~-~~g~~P~~~~~spDG-k~lyV~n~~~  198 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIELPDAPRF-LVGTYQWMNALTPDN-KNLLFYQFSP  198 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCC-CBSCCGGGSEECTTS-SEEEEEECSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEECCCcccc-ccCCCcceEEEcCCC-CEEEEEecCC
Confidence            79999999988876 3          5789999998 45555554332 1111 012334678999999 88888764  


Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CE-EEEEecCeEEEEecCCCCceeeee-
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QH-LLSRDYMNLKLWDIRMDSTPVATF-  361 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~-l~~~~~~~i~lwd~~~~~~~~~~~-  361 (497)
                      ++.|.+.|+.+++..    ..+..               ..  +....|++ +. ++...+|.+.+.++.. ++..... 
T Consensus       199 ~~~VsVID~~t~kvv----~~I~v---------------~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~  256 (426)
T 3c75_H          199 APAVGVVDLEGKTFD----RMLDV---------------PD--CYHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT  256 (426)
T ss_dssp             SCEEEEEETTTTEEE----EEEEC---------------CS--EEEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC
T ss_pred             CCeEEEEECCCCeEE----EEEEc---------------CC--ceeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee
Confidence            588999999998755    33332               11  13344544 22 2333457777777743 4444221 


Q ss_pred             ---eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEec----------cCccee
Q 010933          362 ---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEA----------GKNENR  427 (497)
Q Consensus       362 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~----------~~~~v~  427 (497)
                         .....            .++  ..+.+.+++..++..+..+.+.+.|....... ...+..          ......
T Consensus       257 ~~~~v~~~------------p~~--~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~  322 (426)
T 3c75_H          257 EVFHTEDE------------LLI--NHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ  322 (426)
T ss_dssp             CCCSCTTS------------CBC--SCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred             eeeccCCC------------cee--eEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence               11111            111  24678999988888888899999998754321 011110          011122


Q ss_pred             eeEeecCCCcccccccceeEeecc--------Cc-eec----CCCCCcccccccCCCeEEEEEecCCC-EEEEEe--CCc
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYR--------QA-HEN----SSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNS  491 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d--------~~-~iw----~~~~~~~~~~~~~~~i~~l~~~p~~~-~la~~~--~~~  491 (497)
                      .+++++  ++..     +.....+        +. .++    .+.+... .+........++|+|||+ .|+++.  ++.
T Consensus       323 ~va~s~--dg~r-----lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~-~I~vg~~P~gia~spDg~~~lyv~n~~s~~  394 (426)
T 3c75_H          323 QTAYHR--QSDR-----IYLLVDQRDEWKHKAASRFVVVLNAETGERIN-KIELGHEIDSINVSQDAEPLLYALSAGTQT  394 (426)
T ss_dssp             CEEEEG--GGTE-----EEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-EEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             eeEEcC--CCCE-----EEEEecccccccccCCCCEEEEEECCCCeEEE-EEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence            356776  3332     2222211        12 344    2222222 222233567899999999 887777  567


Q ss_pred             eEEEe
Q 010933          492 LFFHY  496 (497)
Q Consensus       492 ~~i~~  496 (497)
                      +.|+.
T Consensus       395 VsVID  399 (426)
T 3c75_H          395 LHIYD  399 (426)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.94  E-value=1.1e-06  Score=82.60  Aligned_cols=153  Identities=10%  Similarity=0.026  Sum_probs=82.6

Q ss_pred             CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc--cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933          227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  303 (497)
Q Consensus       227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  303 (497)
                      ..++.+ .++.|..+|..++...... ......  ......    ....  + ..+++++.++.+..+|..+++....  
T Consensus       144 ~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~----~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~--  213 (376)
T 3q7m_A          144 GLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLRGESA----PTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQ--  213 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----CCCCC----CEEE--T-TEEEECCTTTEEEEEETTTCCEEEE--
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeecCCCC----cEEE--C-CEEEEEcCCCEEEEEECCCCcEEEE--
Confidence            466666 8999999999844433332 111000  000111    1222  3 4677788899999999998875421  


Q ss_pred             ceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccc
Q 010933          304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  382 (497)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (497)
                        ...  ..+.....+...........+  .+..++.++ ++.+..+|..+ ++.+........                
T Consensus       214 --~~~--~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~----------------  270 (376)
T 3q7m_A          214 --QRI--SQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRS-GQIMWKRELGSV----------------  270 (376)
T ss_dssp             --EEC--CC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTT-CCEEEEECCCCE----------------
T ss_pred             --Eec--ccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCC-CcEEeeccCCCC----------------
Confidence              111  000000000000000011111  234555554 59999999986 777665542211                


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          383 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       383 ~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                       ..+..  ++..|+.++.++.|..+|..+++.+
T Consensus       271 -~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          271 -NDFIV--DGNRIYLVDQNDRVMALTIDGGVTL  300 (376)
T ss_dssp             -EEEEE--ETTEEEEEETTCCEEEEETTTCCEE
T ss_pred             -CCceE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence             23333  4667888889999999999998554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.92  E-value=4.1e-06  Score=74.50  Aligned_cols=174  Identities=11%  Similarity=0.006  Sum_probs=103.0

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEE
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVR  289 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~  289 (497)
                      .....+++.+++..|..+  ..+.|.+++.+ +.......       .........++++|++ ..|+.+..   .+.|.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEE-------ECCCCCccEEEEeeCC-CEEEEEECCCCCcEEE
Confidence            356789999876555554  68899999987 33222221       1112456899999975 45554443   46888


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeecccc
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                      .+++.... .    +.+..            ........++++|++..|..++.  +.|..+|+.. ......+.....+
T Consensus       150 ~~~~dg~~-~----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P  211 (267)
T 1npe_A          150 TSHMDGTN-R----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP  211 (267)
T ss_dssp             EEETTSCC-C----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE
T ss_pred             EEecCCCC-c----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc
Confidence            88876432 1    11111            00134688999998887776643  8999999863 3222222221111


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcceEEEeccC-cceeeeEeecC
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAA  434 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~-~~v~~~~~~~~  434 (497)
                                      ..++..  +..|+.+ ...+.|.++|..+++.+ ..+.... .....+++.|.
T Consensus       212 ----------------~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          212 ----------------FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             ----------------EEEEEE--TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECS
T ss_pred             ----------------eEEEEe--CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCc
Confidence                            356654  4455544 45689999999887544 4444332 23566777663

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.91  E-value=2.9e-07  Score=93.31  Aligned_cols=195  Identities=10%  Similarity=0.103  Sum_probs=113.1

Q ss_pred             eEEEeCCCCCEEEEE-cCC-------------------eEEEEeCccCceeeEEeecCCCc---cCCCCCCeEEEEEeCC
Q 010933          218 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPI  274 (497)
Q Consensus       218 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~  274 (497)
                      ..+++.|++..++.+ .++                   .|..+|.++++..... ...+..   ... .....-+....+
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-~~~~~d~wd~~~-~~~p~l~~~~~d  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-QETPGDNWDYTS-TQPMILADIKIA  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ESSTTCCSCCCC-CSCCEEEEEEET
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-ecCCCccccccc-CCCcEEEecccC
Confidence            357788888888877 553                   5889999854443332 111100   000 112222333345


Q ss_pred             CC--cEEEEEeCCCeEEEEEccCCcccccccce---ecccccccCC-------------ccc---cccccccccEEEEee
Q 010933          275 YC--NLLAYSSSRGFVRLVDMRQSALCDHSARI---LRDAAESHGS-------------KSF---FTEIIASISDIKFAN  333 (497)
Q Consensus       275 ~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~-------------~~~---~~~~~~~i~~~~~s~  333 (497)
                      |.  ..++.++.+|.++++|.++|+.+......   +...-+....             ...   ..+. .....++++|
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~-~~w~~~a~dp  402 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA-HNWHPMSFNP  402 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS-SCSSCCEEET
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc-cCCCCceEcC
Confidence            52  46888899999999999999865321000   0000000000             000   0010 1124688999


Q ss_pred             CCCEEEEEe--------------------------------------------cCeEEEEecCCCCceeeeeeecccccc
Q 010933          334 DGQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       334 ~g~~l~~~~--------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~~~~~  369 (497)
                      ++.++++..                                            .+.|..||+.+ ++.+.++......  
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~--  479 (677)
T 1kb0_A          403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW--  479 (677)
T ss_dssp             TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC--
T ss_pred             CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC--
Confidence            888877642                                            16799999987 8888877654321  


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe-ccCcceeeeEeec
Q 010933          370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQA  433 (497)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~~  433 (497)
                                    ....+..++..++.++.||.+++||..+++.+ ..+. ++......+.+..
T Consensus       480 --------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~  529 (677)
T 1kb0_A          480 --------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMV  529 (677)
T ss_dssp             --------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE
T ss_pred             --------------cCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEe
Confidence                          24556678888999999999999999999665 4554 3323333444433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.89  E-value=2.2e-06  Score=87.12  Aligned_cols=195  Identities=12%  Similarity=0.088  Sum_probs=114.5

Q ss_pred             EEEeCCCCCEEEEE-cCCe-------------------EEEEeCccCceeeEEeecCCCccCC--CCCCeEEEEEeCCCC
Q 010933          219 SISNNSDCETFVSA-DDLR-------------------INLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC  276 (497)
Q Consensus       219 ~~~~~~~~~~l~~~-~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  276 (497)
                      .+++.|++..++.+ .++.                   |..+|.++++..... ...+...-.  ....+.......+| 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~~~l~d~~~~G-  316 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY-QTTPGDAWDYTATQHMILAELPIDG-  316 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee-ecCCcccccccCCCCcEEEeeccCC-
Confidence            57888888888888 6653                   999999955544332 111100000  11222222333355 


Q ss_pred             c---EEEEEeCCCeEEEEEccCCcccccccc---eeccccc----c-----------cCCc--cccccc--cccccEEEE
Q 010933          277 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----S-----------HGSK--SFFTEI--IASISDIKF  331 (497)
Q Consensus       277 ~---~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~~~----~-----------~~~~--~~~~~~--~~~i~~~~~  331 (497)
                      .   .++.++.+|.++++|.++|+.+.....   .+..+..    .           +...  ....+.  ......++|
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            4   788899999999999999986521000   0100000    0           0000  000000  012345889


Q ss_pred             eeCCCEEEEEe----------------------------------------------cCeEEEEecCCCCceeeeeeecc
Q 010933          332 ANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIHE  365 (497)
Q Consensus       332 s~~g~~l~~~~----------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~  365 (497)
                      +|+..++++..                                              +|.|+.||+.+ ++.+.+++.+.
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~  475 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT  475 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence            99887777641                                              26799999987 88888877654


Q ss_pred             cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-CcceeeeEeec
Q 010933          366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQA  433 (497)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~~~  433 (497)
                      ..                ..-.+...+.+++.|+.||.++.||.++++.+ ..++.. ......+.+..
T Consensus       476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL-WEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE
T ss_pred             Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCccc-eeeeCCCCcccCceEEEE
Confidence            32                23456667889999999999999999999665 455433 22234455544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.86  E-value=2.3e-05  Score=81.46  Aligned_cols=248  Identities=10%  Similarity=0.033  Sum_probs=139.9

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      ...|.++...++|.+.+...+ -|.+||.. .+..............-....|.++..+++| . |-.|+.++-|..|+.
T Consensus       262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~  337 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHP  337 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEESS-CEEEEETT-TTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECG
T ss_pred             CCeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCC
Confidence            346889998888887766554 58889977 4433332110000111234679999999987 4 566777777899987


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecc-ccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE-HLRPKLC  372 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~  372 (497)
                      .++...     .+.. ....   ..  -....|.++...++|.+.+...++-|..|+..+ ++ ...+.... .....  
T Consensus       338 ~~~~~~-----~~~~-~~~~---~~--l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~--  402 (795)
T 4a2l_A          338 IRNRFK-----NIRN-IPYK---NS--LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARG--  402 (795)
T ss_dssp             GGGSSE-----EECC-CTTS---SS--CSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CC-EEEECCC------C--
T ss_pred             Ccccce-----EEcC-CCCC---CC--CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccC--
Confidence            664321     1111 0000   00  012468899888888766654557899999864 33 33332111 00000  


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-----cCcceeeeEeecCCCcccccccceeE
Q 010933          373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTR  447 (497)
Q Consensus       373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~  447 (497)
                        .   ....+.++...++++.|..|+.++-|.+||..+++.  ..+..     ....|.++...+  ++.      +-.
T Consensus       403 --l---~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d~--~g~------lwi  467 (795)
T 4a2l_A          403 --I---GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPDG--EGN------LWL  467 (795)
T ss_dssp             --C---SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEECS--SSC------EEE
T ss_pred             --C---CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEECC--CCC------EEE
Confidence              0   001136788888888566678777899999887643  22221     234556655543  333      233


Q ss_pred             eeccCceecCCCCCccccc--------ccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          448 GLYRQAHENSSSGHHELSY--------NLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       448 ~~~d~~~iw~~~~~~~~~~--------~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      |+..|...+..........        -....|.++...++|.+.+... ++++.|+
T Consensus       468 gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~  523 (795)
T 4a2l_A          468 GTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK  523 (795)
T ss_dssp             EESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred             EecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence            3344445552221111111        1235789999999998776655 8888875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.84  E-value=9.2e-08  Score=88.65  Aligned_cols=254  Identities=9%  Similarity=0.004  Sum_probs=138.4

Q ss_pred             EEEEcCCCCEEEEee----------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccccc-Ccccccccc
Q 010933           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLKS  105 (497)
Q Consensus        37 ~i~~sp~g~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~  105 (497)
                      .++|+|||++++++.          .++.|.+||..+++.                       +.++.-. .+++  +  
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-----------------------v~~I~v~~~~~~--~--  121 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPRF--S--  121 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-----------------------EEEEEETTSCSC--C--
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-----------------------EEEEECCCcccc--c--
Confidence            799999999998886          368999999998754                       3333211 0000  0  


Q ss_pred             cccccceeEEEEEecCCCCEEEEEeC--CccEEE--eecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  181 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s~--d~~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (497)
                        .-.....+++  +|||++++.+..  +..+.+  +|..+  ...+. ..  .  | . ...+++.......       
T Consensus       122 --~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~-v~--~--~-~-~~~p~g~~~~~~~-------  181 (368)
T 1mda_H          122 --VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--DQLTK-SA--S--C-F-HIHPGAAATHYLG-------  181 (368)
T ss_dssp             --BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--EEEEE-CS--S--C-C-CCEEEETTEEECC-------
T ss_pred             --cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--ceEEE-CC--C--c-e-EEccCCCeEEEEE-------
Confidence              0011345888  799999998874  467888  99877  22211 10  0  0 0 0011111111111       


Q ss_pred             cccccccCcceEEEeecCCcc--ceeee---eeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc-eeeEEeec
Q 010933          182 YHLEWTENMATKIANVGNSVH--ARCQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDM  254 (497)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~  254 (497)
                           ..++.+...+.+....  .+...   ..+.-...+.   . .+++..++.. . +.+.+.|..... .....+.+
T Consensus       182 -----~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~  251 (368)
T 1mda_H          182 -----SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             -----CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCS
T ss_pred             -----cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEe
Confidence                 1233444444442000  01100   0001112232   3 5556666555 7 999999986322 22222111


Q ss_pred             CCCccCCC---CCCeEEEEEeCCCCcEEEEEeC---------CCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933          255 KPSNMDDL---TEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  322 (497)
Q Consensus       255 ~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (497)
                      .......+   ......++++|++ +.++++..         ++.+.++|+.+++.+    ..+..              
T Consensus       252 ~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v--------------  312 (368)
T 1mda_H          252 NESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------  312 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------
T ss_pred             ccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC--------------
Confidence            10000000   1111226899999 66665432         235669999998765    33333              


Q ss_pred             cccccEEEEeeCCCE-EEEEe--cCeEEEEecCCCCceeeeeeecccc
Q 010933          323 IASISDIKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       323 ~~~i~~~~~s~~g~~-l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                      ......++|+|||++ +++..  ++.|.++|+.+ .+.+.++.....+
T Consensus       313 g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P  359 (368)
T 1mda_H          313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence            135789999999984 44444  59999999997 8999988876654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.81  E-value=3.5e-07  Score=84.22  Aligned_cols=211  Identities=10%  Similarity=0.032  Sum_probs=120.0

Q ss_pred             CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010933          226 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  304 (497)
Q Consensus       226 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  304 (497)
                      +..+..+ .++.|..+|.. +......        ......+.++...+++ . +..++.++.|..+|.. ++..    .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~----~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEK----W  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEE----E
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEe----E
Confidence            3456666 88999999987 4443332        1223345556677776 4 6668888999999988 6533    1


Q ss_pred             eecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCcccee
Q 010933          305 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  384 (497)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (497)
                      .+..             ....+.++.+.+++.+.+..  +.|..+| .+ ++.+..+......+               .
T Consensus       171 ~~~~-------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~  218 (330)
T 3hxj_A          171 RFKT-------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------T  218 (330)
T ss_dssp             EEEC-------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------S
T ss_pred             EEec-------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------e
Confidence            1111             01346677777778755544  8899999 44 66665554333221               4


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC-CCc
Q 010933          385 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHH  462 (497)
Q Consensus       385 ~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~  462 (497)
                      ++...++|. |..++.++.|..++. +++.. ..+......+..+.+..  ++      .+..++.++. ..+... +..
T Consensus       219 ~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~-~~~~~~~~~~~~~~~~~--~g------~l~v~t~~ggl~~~d~~g~~~  287 (330)
T 3hxj_A          219 RPAISEDGT-IYVTSLDGHLYAINP-DGTEK-WRFKTGKRIESSPVIGN--TD------TIYFGSYDGHLYAINPDGTEK  287 (330)
T ss_dssp             CCEECTTSC-EEEEETTTEEEEECT-TSCEE-EEEECSSCCCSCCEECT--TS------CEEEECTTCEEEEECTTSCEE
T ss_pred             ceEECCCCe-EEEEcCCCeEEEECC-CCCEe-EEeeCCCCccccceEcC--CC------eEEEecCCCCEEEECCCCcEE
Confidence            678888775 555677788888874 44333 34443333333344432  22      2566666655 555322 222


Q ss_pred             ccccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933          463 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  495 (497)
Q Consensus       463 ~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~  495 (497)
                      .........+.++...++|.+.+...++.+++.
T Consensus       288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYAL  320 (330)
T ss_dssp             EEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred             EEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence            222222345566677777776554444445543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.80  E-value=1.3e-09  Score=102.25  Aligned_cols=186  Identities=10%  Similarity=0.059  Sum_probs=98.7

Q ss_pred             CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCc
Q 010933          122 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  201 (497)
Q Consensus       122 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (497)
                      ++..+++++.|+.|..||..+|+.+..                                                ..   
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~------------------------------------------------~~---   36 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT------------------------------------------------LK---   36 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE------------------------------------------------EE---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE------------------------------------------------ec---
Confidence            567899999999999999998885432                                                11   


Q ss_pred             cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC-CCeE-EEEEeCCCCcE
Q 010933          202 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVIT-SAEFHPIYCNL  278 (497)
Q Consensus       202 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~~  278 (497)
                                .  ..+.+..+..++..++++ .|+.|+.||.++++ ....+       ..+. ..+. +..+. .+ ..
T Consensus        37 ----------~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-~~w~~-------~~~~~~~~~~sp~~~-~~-~~   94 (369)
T 2hz6_A           37 ----------E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-GLTKL-------PFTIPELVQASPCRS-SD-GI   94 (369)
T ss_dssp             ----------C--CCSCCCC-----CCEEECTTTCCEEEC-----C-CSEEC-------SCCHHHHHTTCSCC-------
T ss_pred             ----------C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-eeeee-------eccCccccccCceEe-cC-CE
Confidence                      1  122222334567778887 99999999997433 32221       1110 0000 00111 23 56


Q ss_pred             EEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCce
Q 010933          279 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  357 (497)
Q Consensus       279 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~  357 (497)
                      +++++.|+.|+.||.++|+...    .+..+              .   ...++|++..+++++ ++.|+.||.++ ++.
T Consensus        95 v~~g~~dg~v~a~D~~tG~~~w----~~~~~--------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~  152 (369)
T 2hz6_A           95 LYMGKKQDIWYVIDLLTGEKQQ----TLSSA--------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-REL  152 (369)
T ss_dssp             CCCCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SSC
T ss_pred             EEEEeCCCEEEEEECCCCcEEE----EecCC--------------C---cccccccCCEEEEEecCCEEEEEECCC-CCE
Confidence            7888889999999999997642    22220              0   133456777777764 59999999987 777


Q ss_pred             eeeeeecccccccccccCCCCCccceeEEEEcCCC---CEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      +..+.....                 ....++++.   ..+++++.||.|+.||..+++.+ ....
T Consensus       153 ~W~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~  200 (369)
T 2hz6_A          153 RWNATYFDY-----------------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL-WIQN  200 (369)
T ss_dssp             CCEEEEEEE-----------------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE-EEEE
T ss_pred             EEeEecccc-----------------cCccccCCccccceEEEECCCCEEEEEECCCCcEE-EEec
Confidence            766654321                 123333332   46778899999999999998554 4443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.78  E-value=4e-09  Score=98.96  Aligned_cols=189  Identities=10%  Similarity=0.009  Sum_probs=96.6

Q ss_pred             CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC
Q 010933           43 TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN  122 (497)
Q Consensus        43 ~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~  122 (497)
                      ++..+++++.||.|+.||..+++.                       +-.+.. .             .+.+..+  ..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~-----------------------~W~~~~-~-------------~~~s~p~--~~~   48 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI-----------------------KWTLKE-D-------------PVLQVPT--HVE   48 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE-----------------------EEEEEC-C-------------CSCCCC------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-----------------------EEEecC-C-------------Cceecce--EcC
Confidence            577899999999999999998864                       212221 1             1222223  245


Q ss_pred             CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933          123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  202 (497)
Q Consensus       123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (497)
                      +..+++++.|+.|+.||..+++...........                                               
T Consensus        49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-----------------------------------------------   81 (369)
T 2hz6_A           49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-----------------------------------------------   81 (369)
T ss_dssp             -CCEEECTTTCCEEEC-----CCSEECSCCHHH-----------------------------------------------
T ss_pred             CCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-----------------------------------------------
Confidence            667777889999999999887743221100000                                               


Q ss_pred             ceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE
Q 010933          203 ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  281 (497)
Q Consensus       203 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  281 (497)
                              .....++    +. .+..+++| .++.|+.||.++ ++..-.       +..+.    ...++|++ ..+++
T Consensus        82 --------~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~-------~~~~~----~~~~~p~~-~~v~~  135 (369)
T 2hz6_A           82 --------LVQASPC----RS-SDGILYMGKKQDIWYVIDLLT-GEKQQT-------LSSAF----ADSLSPST-SLLYL  135 (369)
T ss_dssp             --------HHTTCSC----C------CCCCEEEEEEEEECCC-----------------------------------EEE
T ss_pred             --------ccccCce----Ee-cCCEEEEEeCCCEEEEEECCC-CcEEEE-------ecCCC----cccccccC-CEEEE
Confidence                    0001111    11 23355666 899999999984 443322       22221    23455677 78999


Q ss_pred             EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC----CCEEEEEecCeEEEEecCCCCce
Q 010933          282 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRMDSTP  357 (497)
Q Consensus       282 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~l~~~~~~~i~lwd~~~~~~~  357 (497)
                      ++.|+.|+.||.++++...+    +..               .......++++    +.+++.+.++.|+.||.++ ++.
T Consensus       136 ~~~dg~v~a~d~~tG~~~W~----~~~---------------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t-G~~  195 (369)
T 2hz6_A          136 GRTEYTITMYDTKTRELRWN----ATY---------------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES-GDV  195 (369)
T ss_dssp             EEEEEEEECCCSSSSSCCCE----EEE---------------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTT-CCE
T ss_pred             EecCCEEEEEECCCCCEEEe----Eec---------------ccccCccccCCccccceEEEECCCCEEEEEECCC-CcE
Confidence            99999999999999875522    111               00112223332    4444444569999999986 887


Q ss_pred             eeeeee
Q 010933          358 VATFKI  363 (497)
Q Consensus       358 ~~~~~~  363 (497)
                      +.++..
T Consensus       196 ~W~~~~  201 (369)
T 2hz6_A          196 LWIQNY  201 (369)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            777663

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.71  E-value=4.6e-06  Score=76.53  Aligned_cols=157  Identities=11%  Similarity=0.039  Sum_probs=93.4

Q ss_pred             CeeEEEeCC-CCCEEEEE-c-----------------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCC
Q 010933          216 NINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  276 (497)
Q Consensus       216 ~v~~~~~~~-~~~~l~~~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  276 (497)
                      ....+++.+ +|++.++- .                 ++.|..||.. .++.....        ........++++|++ 
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~--------~~~~~p~gia~~~dg-  196 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKETTLLL--------KELHVPGGAEVSADS-  196 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTEEEEEE--------EEESCCCEEEECTTS-
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-CCEEEEec--------cCCccCcceEECCCC-
Confidence            467788898 88877764 3                 3678888876 33322211        111234679999998 


Q ss_pred             cEEEEE-eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e----------cC
Q 010933          277 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D----------YM  344 (497)
Q Consensus       277 ~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~----------~~  344 (497)
                      +.|+++ +..+.|.+|++.....-  ....+..             ..+ ...++++++|++.++. .          .+
T Consensus       197 ~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~  260 (322)
T 2fp8_A          197 SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDP  260 (322)
T ss_dssp             SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECCCCCEEEEecCcccccccCCCcc
Confidence            755555 55789999998753210  0011111             012 5678999999877664 3          25


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      .|..+|..  ++.+..+....+..           ...++.+++ .+++++++...++.|.++++...
T Consensus       261 ~v~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          261 KGIKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             EEEEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            67777763  77777776543210           000135666 46666666667889999998643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.71  E-value=0.00016  Score=75.14  Aligned_cols=245  Identities=10%  Similarity=-0.027  Sum_probs=136.1

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      ...|.++...++|.+.+...++-|..|+.. .... ..+...+..-.-....|.++..+++| . |-.|+.++-|..||.
T Consensus       309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~-~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~  384 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPI-RNRF-KNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNP  384 (795)
T ss_dssp             SSCEEEEEECTTSCEEEEESSSCEEEECGG-GGSS-EEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECT
T ss_pred             CCcEEEEEEeCCcCEEEEECCCCeEEeCCC-cccc-eEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcC
Confidence            457899999999987766577778888876 3322 22111110011134679999999887 4 556788877999998


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  372 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  372 (497)
                      .+++..     .+......+.  ..  -....|.++...++|++|..|+. +-|..||..+ ++ ...+.......    
T Consensus       385 ~~~~~~-----~~~~~~~~~~--~~--l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l----  449 (795)
T 4a2l_A          385 ITQRFT-----SYTLQEDESA--RG--IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQL----  449 (795)
T ss_dssp             TTCCEE-----EECCC--------C--CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCC----
T ss_pred             CCCcEE-----EEecCCCCcc--cC--CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCc----
Confidence            765432     1111000000  00  01246889988888984555554 7899999875 43 33332111000    


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-------cCcceeeeEeecCCCcccccccce
Q 010933          373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-------GKNENRKPILQAAPRARRSSLSNL  445 (497)
Q Consensus       373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~l  445 (497)
                            ....+.++...++|.+.+...  +-|.+|+..++...  .+..       ....|.++...+  ++.+      
T Consensus       450 ------~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~--~g~l------  511 (795)
T 4a2l_A          450 ------VNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDS--HKRL------  511 (795)
T ss_dssp             ------SCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECT--TCCE------
T ss_pred             ------CCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEE--EccccccccccCCceEEEEEECC--CCCE------
Confidence                  001135788888888666544  45888998765322  2211       124456655544  4433      


Q ss_pred             eEeeccCceecCCC-CCc------ccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          446 TRGLYRQAHENSSS-GHH------ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       446 ~~~~~d~~~iw~~~-~~~------~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                      -.|+..|...|... ...      ....-....|.++...++|.+.+.. .++++.|+
T Consensus       512 Wigt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~d  568 (795)
T 4a2l_A          512 WIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGT-REGFYCFN  568 (795)
T ss_dssp             EEEESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSCEEEEE
T ss_pred             EEEeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCCceeEC
Confidence            33333444444211 111      0011234578999998999866554 45888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.64  E-value=1e-05  Score=75.95  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc----cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010933          227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  301 (497)
Q Consensus       227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  301 (497)
                      ..++.+ .++.+..+|..++...... ......    +.............  + ..+++++.++.+..+|.++++... 
T Consensus       189 ~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~g~l~~~d~~tG~~~w-  263 (376)
T 3q7m_A          189 GAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYNGNLTALDLRSGQIMW-  263 (376)
T ss_dssp             TEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE--T-TEEEEECTTSCEEEEETTTCCEEE-
T ss_pred             CEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE--C-CEEEEEecCcEEEEEECCCCcEEe-
Confidence            456667 8899999998844433332 111000    00000000011111  3 567788889999999999887442 


Q ss_pred             ccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCc
Q 010933          302 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI  380 (497)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (497)
                         ....               .....+..  ++..++.+ .++.+..+|..+ ++.+..........           .
T Consensus       264 ---~~~~---------------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~-----------~  311 (376)
T 3q7m_A          264 ---KREL---------------GSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL-----------L  311 (376)
T ss_dssp             ---EECC---------------CCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSC-----------C
T ss_pred             ---eccC---------------CCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCc-----------c
Confidence               1111               12233333  34455555 458999999986 77766554211110           0


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       381 ~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                         .....  .+..|+.++.+|.|+++|..+++.+
T Consensus       312 ---~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          312 ---TSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             ---CCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ---cCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence               12222  2567889999999999999998554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.62  E-value=5.1e-05  Score=67.31  Aligned_cols=220  Identities=12%  Similarity=0.132  Sum_probs=128.8

Q ss_pred             cceEEEEEcCCCCEEEEee-cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ..+..++++|+++.|..+. .++.|..++..+...                       ...+...-            ..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----------------------~~~~~~~~------------~~   80 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----------------------TTIIRQDL------------GS   80 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------------------EEEECTTC------------CC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----------------------EEEEECCC------------CC
Confidence            4567999999766665544 568999999876432                       01111111            34


Q ss_pred             eeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          112 INRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      ...+++  ++++..++.+ ...+.|.+++++......+                                          
T Consensus        81 p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~------------------------------------------  116 (267)
T 1npe_A           81 PEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQRRVL------------------------------------------  116 (267)
T ss_dssp             EEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEE------------------------------------------
T ss_pred             ccEEEE--EecCCeEEEEECCCCEEEEEEcCCCCEEEE------------------------------------------
Confidence            678888  5655555554 5667888888764321110                                          


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--c--CCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                         ..........++++|++..|..+  .  .+.|..++++ +.. ...+      ....-...
T Consensus       117 -------------------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~-~~~~------~~~~~~~P  169 (267)
T 1npe_A          117 -------------------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTN-RRIL------AQDNLGLP  169 (267)
T ss_dssp             -------------------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCC-CEEE------ECTTCSCE
T ss_pred             -------------------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCC-cEEE------EECCCCCC
Confidence                               01112345789999965555544  3  4688888887 322 2221      11122457


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-C
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M  344 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~  344 (497)
                      ..++++|++..++++-...+.|.++|+......    .....              ......++..  +..|..++ . +
T Consensus       170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~~--------------~~~P~gi~~d--~~~lyva~~~~~  229 (267)
T 1npe_A          170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTN  229 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTT
T ss_pred             cEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEecC--------------CCCceEEEEe--CCEEEEEECCCC
Confidence            899999987244445555789999998754321    11111              0123455543  55555553 3 8


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  393 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  393 (497)
                      .|..+|..+ ++.+..+.......+              ..+++.|++.
T Consensus       230 ~v~~~d~~~-g~~~~~i~~g~~~~p--------------~gi~~~~~~~  263 (267)
T 1npe_A          230 SVIAMDLAI-SKEMDTFHPHKQTRL--------------YGITIALSQC  263 (267)
T ss_dssp             EEEEEETTT-TEEEEEECCSSCCCC--------------CCEEEECSCC
T ss_pred             eEEEEeCCC-CCceEEEcccccccc--------------ceeeecCccC
Confidence            999999976 777777754331100              4788888764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.61  E-value=5.4e-05  Score=68.71  Aligned_cols=235  Identities=11%  Similarity=0.118  Sum_probs=128.8

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  112 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i  112 (497)
                      .....++|+++|+++++-..++.|..||.++...                        ..+. -.            ...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~------------------------~~~~-~~------------~~p   74 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ------------------------IHAT-VE------------GKV   74 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE------------------------EEEE-CS------------SEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE------------------------EEEe-CC------------CCc
Confidence            4567899999999777766788999998765311                        1111 11            457


Q ss_pred             eEEEEEecCCCCEEEEEeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          113 NRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       113 ~~l~~~~s~~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      ..+++  +++++++++.....  .|..++..+++...+...                                       
T Consensus        75 ~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~---------------------------------------  113 (306)
T 2p4o_A           75 SGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL---------------------------------------  113 (306)
T ss_dssp             EEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC---------------------------------------
T ss_pred             eeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC---------------------------------------
Confidence            88998  67888655554332  355556555553321100                                       


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeec--CCCccCCCCCCeE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEVIT  267 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~  267 (497)
                                           ........++..+++..+++- .++.|+.+|.......+.....  ........-....
T Consensus       114 ---------------------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A          114 ---------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             ---------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             ---------------------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence                                 001112334444555445555 6888888887622111111000  0000111112345


Q ss_pred             EEEEeCCCCcEE-EEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933          268 SAEFHPIYCNLL-AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  344 (497)
Q Consensus       268 ~~~~~~~~~~~l-~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~  344 (497)
                      .+  +|++ ..| ++-+..+.|..+|+.. ++..  ....+..              ......++++++|+++++... +
T Consensus       173 gi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          173 GL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             EE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECBTTC
T ss_pred             Cc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeCCCC
Confidence            55  7787 555 4445578999999875 3211  0111111              024677999999987666543 8


Q ss_pred             eEEEEecCCCCceee--eeeecccccccccccCCCCCccceeEEEEc---CCCCEEEEEeCCC
Q 010933          345 NLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN  402 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~s~~~dg  402 (497)
                      .|.++|..  ++...  .+......               .++++|.   |+++.|+..+..+
T Consensus       234 ~V~~~~~~--G~~~~~~~~~~~~~~---------------p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          234 SVVRIAPD--RSTTIIAQAEQGVIG---------------STAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CEEEECTT--CCEEEEECGGGTCTT---------------EEEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEECCC--CCEEEEeecccccCC---------------ceEEEEecccCCCCEEEEECCCC
Confidence            99999874  54422  22211010               1689998   8887777666543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.61  E-value=4.8e-05  Score=66.51  Aligned_cols=172  Identities=14%  Similarity=0.043  Sum_probs=106.8

Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  280 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  280 (497)
                      +.+.++..+.......+.|++++.++++. .  ++.|.++|.. .++....+.+.     .+ .....+++.  +..+.+
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l~-----~~-~fgeGi~~~--g~~lyv   80 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQ-TGKVENIHKMD-----DS-YFGEGLTLL--NEKLYQ   80 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETT-TCCEEEEEECC-----TT-CCEEEEEEE--TTEEEE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECC-CCCEEEEEecC-----CC-cceEEEEEe--CCEEEE
Confidence            34455412222346799999987655554 3  6899999999 55566554322     11 122345555  414555


Q ss_pred             EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceee
Q 010933          281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA  359 (497)
Q Consensus       281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~  359 (497)
                      +.-.++.+.++|..+.+.+    ..+..               +.-....+++||+.++++.. +.|.++|..+ .+.+.
T Consensus        81 ~t~~~~~v~viD~~t~~v~----~~i~~---------------g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~  140 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNI----KNFTH---------------QMKDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIK  140 (266)
T ss_dssp             EETTCSEEEEEETTTTEEE----EEEEC---------------CSSSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEE
T ss_pred             EEecCCEEEEEECCCCcEE----EEEEC---------------CCCCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEE
Confidence            5556899999999987655    33332               00122446678887777644 9999999986 77777


Q ss_pred             eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      .+.......          .+...+.+.|. +++..+....++.|.+-|..+++.+
T Consensus       141 ~I~Vg~~~~----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          141 KHNVKYNGH----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             EEECEETTE----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred             EEEECCCCc----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE
Confidence            776443211          00001467888 7765555556899999999998543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.61  E-value=7.3e-06  Score=76.50  Aligned_cols=156  Identities=11%  Similarity=0.116  Sum_probs=101.4

Q ss_pred             CCCCEEEE-E-cCCeEEEEeCccCc---eeeEEeecCCCccC-C-CCCCeEEEEEeCCCCcEEEEEeCC------CeEEE
Q 010933          224 SDCETFVS-A-DDLRINLWNLEISD---QCFNIVDMKPSNMD-D-LTEVITSAEFHPIYCNLLAYSSSR------GFVRL  290 (497)
Q Consensus       224 ~~~~~l~~-~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~d------g~i~v  290 (497)
                      ++++.|+. | .++.|+++|+.+..   +..++++  +.++. . -....+.+...|+|  +++++..+      |.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie--~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE--PEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC--HHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeec--hhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEE
Confidence            77887766 5 89999999986332   3444431  00110 0 11245778889998  55555444      78999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--------------------cCeEEEEe
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--------------------YMNLKLWD  350 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--------------------~~~i~lwd  350 (497)
                      +|..+.+.+    ..++. ...+         ..--..+.|+|+++.+++++                    ..+|.+||
T Consensus       169 lD~~T~~v~----~~~~~-~~~~---------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D  234 (462)
T 2ece_A          169 LDHYSFEPL----GKWEI-DRGD---------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD  234 (462)
T ss_dssp             ECTTTCCEE----EECCS-BCTT---------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred             EECCCCeEE----EEEcc-CCCC---------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence            999988765    44442 0000         12234688899999998875                    48999999


Q ss_pred             cCCCCceeeeeeecc-cccccccccCCCCCccceeEEEE--cCCCCEEEEEe------CCCcEEEEEcCCC
Q 010933          351 IRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGS------YSNLLRIFSHGVG  412 (497)
Q Consensus       351 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~~------~dg~i~vw~~~~~  412 (497)
                      +.+ ++.+.++.... +..+              ..+.|  +|+++++++++      .+++|.+|..+.+
T Consensus       235 ~~~-~k~~~tI~vg~~g~~P--------------~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          235 LRK-RKRIHSLTLGEENRMA--------------LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             TTT-TEEEEEEESCTTEEEE--------------EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             CCC-CcEeeEEecCCCCCcc--------------ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence            986 78788776541 1110              34545  99999988777      4668888776653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.55  E-value=6.2e-06  Score=75.77  Aligned_cols=180  Identities=12%  Similarity=0.092  Sum_probs=105.4

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  294 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~  294 (497)
                      ..+.++...+++..++...++.|..+|.. +......        ......+.++...+++ . +..++  +.|..+| .
T Consensus       137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~  202 (330)
T 3hxj_A          137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--------KTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-P  202 (330)
T ss_dssp             CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-T
T ss_pred             ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--------ecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-C
Confidence            34555666777775554488999999987 4433322        1223455667777777 5 44455  7899999 6


Q ss_pred             CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccccccccccc
Q 010933          295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  374 (497)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  374 (497)
                      +++..    .....             ....+.++...++|.+.+...++.+..+|..  ++.+..+.......      
T Consensus       203 ~g~~~----~~~~~-------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~------  257 (330)
T 3hxj_A          203 DGTEK----WNFYA-------------GYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIE------  257 (330)
T ss_dssp             TSCEE----EEECC-------------SSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCC------
T ss_pred             CCcEE----EEEcc-------------CCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCcc------
Confidence            65432    11111             1145778888888876666556888888753  66666655433321      


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933          375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  453 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~  453 (497)
                               ..+.+.+++ .|..++.+|.|..+|. +++.. ..+......+.++....  ++.      +..|+.+|.
T Consensus       258 ---------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~-~~~~~~~~~~~~~~~d~--~g~------l~~gt~~G~  316 (330)
T 3hxj_A          258 ---------SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK-WNFETGSWIIATPVIDE--NGT------IYFGTRNGK  316 (330)
T ss_dssp             ---------SCCEECTTS-CEEEECTTCEEEEECT-TSCEE-EEEECSSCCCSCCEECT--TCC------EEEECTTSC
T ss_pred             ---------ccceEcCCC-eEEEecCCCCEEEECC-CCcEE-EEEEcCCccccceEEcC--CCE------EEEEcCCCe
Confidence                     245555555 5667888889999995 55333 34433333344444433  222      455555555

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.54  E-value=3.3e-05  Score=67.53  Aligned_cols=165  Identities=7%  Similarity=-0.079  Sum_probs=96.6

Q ss_pred             EEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933          219 SISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  296 (497)
Q Consensus       219 ~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  296 (497)
                      .+++.  ++.| ++. .++.+.++|.. ..+.+..+...    .+ .    ...++++| ..++++..++.|.++|..+.
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~-t~~v~~~i~~g----~~-~----g~glt~Dg-~~l~vs~gs~~l~viD~~t~  136 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRR-TLSNIKNFTHQ----MK-D----GWGLATDG-KILYGSDGTSILYEIDPHTF  136 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETT-TTEEEEEEECC----SS-S----CCEEEECS-SSEEEECSSSEEEEECTTTC
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECC-CCcEEEEEECC----CC-C----eEEEEECC-CEEEEECCCCeEEEEECCCC
Confidence            34444  4445 445 89999999998 55556554221    01 1    12355677 55556667899999999887


Q ss_pred             cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933          297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  375 (497)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (497)
                      +..    +.+..... .       ......+.+.|. +|++.+... .+.|.+.|..+ ++.+..+...........  .
T Consensus       137 ~v~----~~I~Vg~~-~-------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~--~  200 (266)
T 2iwa_A          137 KLI----KKHNVKYN-G-------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLID--E  200 (266)
T ss_dssp             CEE----EEEECEET-T-------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHH--T
T ss_pred             cEE----EEEEECCC-C-------cccccceeEEEE-CCEEEEecCCCCeEEEEECCC-CcEEEEEECCCccccccc--c
Confidence            654    33322000 0       001235678887 775544443 38999999997 888888864311000000  0


Q ss_pred             CCCCccceeEEEEcCCCCEE-EEEeCCCcEEEEEcCCC
Q 010933          376 NNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       376 ~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~vw~~~~~  412 (497)
                      ..........++|+|+++.| +++...+++.+.++...
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            00000001589999998655 55667889999888754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.53  E-value=0.00019  Score=65.03  Aligned_cols=162  Identities=11%  Similarity=0.092  Sum_probs=89.0

Q ss_pred             CeeEEEeCCCCCEEEEE-cCC--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          216 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      ....+++.++|+++++. ...  .|..++.. .++...+....      .......++..+.+ ..+++-..++.|.++|
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~~------~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d  144 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTLP------DAIFLNGITPLSDT-QYLTADSYRGAIWLID  144 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEECT------TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeCC------CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence            47789999999977665 332  46667765 34433332211      11223455555554 4455444588999999


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCce--eeeeeeccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTP--VATFKIHEHLR  368 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~--~~~~~~~~~~~  368 (497)
                      ...++.     +.+....... . ......-...+.+  +|++++|+.++.  +.|..|++...++.  ...+.....+ 
T Consensus       145 ~~~~~~-----~v~~~~~~~~-~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-  214 (306)
T 2p4o_A          145 VVQPSG-----SIWLEHPMLA-R-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-  214 (306)
T ss_dssp             TTTTEE-----EEEEECGGGS-C-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-
T ss_pred             CCCCcE-----eEEEECCccc-c-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-
Confidence            865421     0100000000 0 0000000123444  889988877643  89999998642221  1111111111 


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                                     ..++++++|+++++....+.|.+++..
T Consensus       215 ---------------~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          215 ---------------DDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             ---------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             ---------------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence                           379999999887777778899999865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=2e-05  Score=79.94  Aligned_cols=93  Identities=9%  Similarity=0.016  Sum_probs=63.0

Q ss_pred             CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec
Q 010933          286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH  364 (497)
Q Consensus       286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~  364 (497)
                      |.|..||+.+++...    .+..              ..++....+..++.+++.++ ++.+++||+++ ++.+.++...
T Consensus       457 g~l~A~D~~tG~~~W----~~~~--------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~  517 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAW----SVEH--------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTG  517 (677)
T ss_dssp             EEEEEEETTTTEEEE----EEEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             cEEEEEeCCCCcEEe----ecCC--------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCC
Confidence            789999999887542    1111              12345556777888888885 49999999997 9999988766


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEE-EEeC----------------CCcEEEEEcCC
Q 010933          365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY----------------SNLLRIFSHGV  411 (497)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~----------------dg~i~vw~~~~  411 (497)
                      .....              .-+.|..+|+.++ +.+.                .+.+.+|.+..
T Consensus       518 ~~~~~--------------~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          518 TGVVA--------------APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             SCCCS--------------CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CCccc--------------CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            54321              3477778887544 3222                36778888763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.50  E-value=3.9e-05  Score=66.23  Aligned_cols=170  Identities=16%  Similarity=0.143  Sum_probs=102.8

Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  280 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  280 (497)
                      +.++++..........+.|+ ++.++.+. .+|  .|+.+|+. +++....+.+.        .........+++..+.+
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~--------~~~FgeGit~~g~~ly~  101 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELG--------KRYFGEGISDWKDKIVG  101 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECC--------TTCCEEEEEEETTEEEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecC--------CccceeEEEEeCCEEEE
Confidence            35555522223334788998 66555554 554  99999999 55555554322        12222222233414444


Q ss_pred             EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933          281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  359 (497)
Q Consensus       281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~  359 (497)
                      ..-.++.+.+||..+.+.+    ..+..                .-....++++++.|+.++ .+.|.++|..+ .+.+.
T Consensus       102 ltw~~~~v~v~D~~t~~~~----~ti~~----------------~~eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~  160 (262)
T 3nol_A          102 LTWKNGLGFVWNIRNLRQV----RSFNY----------------DGEGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVR  160 (262)
T ss_dssp             EESSSSEEEEEETTTCCEE----EEEEC----------------SSCCCCEEECSSCEEECCSSSEEEEECTTT-CSEEE
T ss_pred             EEeeCCEEEEEECccCcEE----EEEEC----------------CCCceEEecCCCEEEEECCCCeEEEEcCCC-CeEEE
Confidence            4455899999999988765    44433                012234456787777764 38899999987 77777


Q ss_pred             eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      ++.......          .+..+..+.|. +|+..+..-.++.|.+.|..+++.+
T Consensus       161 ~I~V~~~g~----------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          161 TITVTAHGE----------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             EEECEETTE----------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred             EEEeccCCc----------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence            776543211          00111357776 7766655556889999999998443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=0.00051  Score=71.22  Aligned_cols=248  Identities=11%  Similarity=0.038  Sum_probs=132.9

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEee-------cCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  286 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  286 (497)
                      ...|.++...++|.+.+....+-|.++|.. .........       .......-....|.++..+++| . |-.|+.++
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQ-QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETT-CC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSS
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCC-CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCC
Confidence            346888988888876665565668888877 332221110       0000111235679999999987 4 56677777


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccc
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      -|..++...+...     .+.. ........  .-....|.++...++|.+.+...++-|..||..+ + ....+.....
T Consensus       334 Gl~~~~~~~~~~~-----~~~~-~~~~~~~~--~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~  403 (781)
T 3v9f_A          334 GINFISNAPPTFH-----TWSY-SPTQMNES--SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENRE  403 (781)
T ss_dssp             CEEEECSSCCSCE-----EEC-----CCCSS--CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----
T ss_pred             eEEEeCCCCCcce-----eecc-CccccccC--CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCC
Confidence            7888888764321     1111 00000000  0012468888888888766554456788888753 2 2222211000


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe---ccCcceeeeEeecCCCccccccc
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---AGKNENRKPILQAAPRARRSSLS  443 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~  443 (497)
                      .        ....   +.++...+++.+.+ |+.++-|..++..+++.  ..+.   .....|.++...+  ++.     
T Consensus       404 ~--------~~~~---v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~--~g~-----  462 (781)
T 3v9f_A          404 L--------LSNS---VLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDK--NKK-----  462 (781)
T ss_dssp             C--------CCSB---EEEEEECTTSCEEE-EETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECT--TSE-----
T ss_pred             C--------CCcc---eEEEEECCCCCEEE-EeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECC--CCC-----
Confidence            0        0011   35788877777555 67667788998876532  2221   1234566655543  333     


Q ss_pred             ceeEeeccCceecCCCC-Cccccc------ccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933          444 NLTRGLYRQAHENSSSG-HHELSY------NLSSKLLHLAWHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       444 ~l~~~~~d~~~iw~~~~-~~~~~~------~~~~~i~~l~~~p~~~~la~~~~~~~~i~~  496 (497)
                       +-.|...|...+.... ......      .....|.++...++|.+.+....++++.|+
T Consensus       463 -lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~  521 (781)
T 3v9f_A          463 -IWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT  521 (781)
T ss_dssp             -EEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred             -EEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence             2333444444442211 111111      114678999999989877665557888775

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.49  E-value=0.00014  Score=73.51  Aligned_cols=178  Identities=13%  Similarity=0.129  Sum_probs=104.9

Q ss_pred             EEEeCCCCCEEEEE-cCC-------------------eEEEEeCccCceeeEEeecCCCccCCCC-------CCeEEEEE
Q 010933          219 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDDLT-------EVITSAEF  271 (497)
Q Consensus       219 ~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~  271 (497)
                      .+++.+++..++.+ .++                   .|.-+|.++++...+. .     ...|.       .+.....+
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~-~-----~~~~~~wd~~~~~~~~~~d~  307 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY-Q-----VTPGDSWDFTATQQITLAEL  307 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-E-----SSTTCCSCCCCCSCEEEEEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe-e-----cCCCccccccCCCCcEEEEe
Confidence            46788888888887 665                   3899999855444332 1     11122       23333333


Q ss_pred             eCCCCc---EEEEEeCCCeEEEEEccCCcccccccc---eeccccc----cc--------CCc--ccccccc--ccccEE
Q 010933          272 HPIYCN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----SH--------GSK--SFFTEII--ASISDI  329 (497)
Q Consensus       272 ~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~~~----~~--------~~~--~~~~~~~--~~i~~~  329 (497)
                      ..+| +   .++.++.+|.++++|.++|+.+.....   .+....+    .+        ...  ....+..  .....+
T Consensus       308 ~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~  386 (668)
T 1kv9_A          308 NIDG-KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM  386 (668)
T ss_dssp             EETT-EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred             ccCC-cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence            3455 4   688899999999999999986521000   0000000    00        000  0000000  012347


Q ss_pred             EEeeCCCEEEEE-------------------------------------ecCeEEEEecCCCCceeeeeeeccccccccc
Q 010933          330 KFANDGQHLLSR-------------------------------------DYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  372 (497)
Q Consensus       330 ~~s~~g~~l~~~-------------------------------------~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  372 (497)
                      +++|+..+++..                                     .+|.|..||+.+ ++.+.+.......     
T Consensus       387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~-----  460 (668)
T 1kv9_A          387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW-----  460 (668)
T ss_dssp             EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC-----
T ss_pred             eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC-----
Confidence            788876665541                                     127799999987 8888777654432     


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                                 ....+...+.+++.++.||.++.||.++++.+ ..++.
T Consensus       461 -----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l-~~~~~  497 (668)
T 1kv9_A          461 -----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL-WQFEA  497 (668)
T ss_dssp             -----------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred             -----------cCceeEeCCCEEEEECCcccchhhhhhcChhh-eEecC
Confidence                       23445557788999999999999999998655 44443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.44  E-value=8.2e-06  Score=78.95  Aligned_cols=164  Identities=8%  Similarity=0.016  Sum_probs=92.5

Q ss_pred             CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC---------------eEEEEEccCCcc
Q 010933          234 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------------FVRLVDMRQSAL  298 (497)
Q Consensus       234 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---------------~i~v~d~~~~~~  298 (497)
                      ++.+.++|..+ .+....+.     ..+   ....++++|+| +++++.+.+.               .|.+.|......
T Consensus       174 ~~~vtvID~~t-~~v~~qI~-----Vgg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~  243 (595)
T 1fwx_A          174 VNVFTAVDADK-WEVAWQVL-----VSG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  243 (595)
T ss_dssp             EEEEEEEETTT-TEEEEEEE-----ESS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             CceEEEEECCC-CeEEEEEE-----eCC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence            45788888884 44443321     111   23567799999 7777777542               355555433211


Q ss_pred             c--------ccccceecccccccCC-ccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCc-----------
Q 010933          299 C--------DHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------  356 (497)
Q Consensus       299 ~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~-----------  356 (497)
                      .        ...+.++......... ...+. -.....++.++|||+++++++.  ..|.++|+.+ .+           
T Consensus       244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~  321 (595)
T 1fwx_A          244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRS  321 (595)
T ss_dssp             HHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGG
T ss_pred             eccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCccc
Confidence            0        0111222221000000 00011 1135678999999999988753  9999999984 21           


Q ss_pred             -eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------CcceEEEeccCcc
Q 010933          357 -PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE  425 (497)
Q Consensus       357 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~---------~~~~~~~~~~~~~  425 (497)
                       .+.......++                +.++|+|+|....+.-.|+.|.+||++..         ..+...+..|-.+
T Consensus       322 ~v~~~v~vG~gP----------------~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          322 AVVAEPELGLGP----------------LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             GEEECCBCCSCE----------------EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             ceEEEcCCCCCc----------------ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence             22233322222                58999999944445666999999999762         2344566655443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.44  E-value=1.3e-05  Score=77.57  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             CCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE-e-CCCCcEEEEEe----------------
Q 010933          224 SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-H-PIYCNLLAYSS----------------  283 (497)
Q Consensus       224 ~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~l~~~~----------------  283 (497)
                      +||+++...  .+..|.+.|+. ..++.+++.++      ....+..+++ + |++ .++++++                
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip------~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCG
T ss_pred             cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCC------CCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccc
Confidence            488888776  68889999999 66666654322      2235788887 5 898 7777774                


Q ss_pred             --CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC-----------------
Q 010933          284 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM-----------------  344 (497)
Q Consensus       284 --~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~-----------------  344 (497)
                        .++.+.+.|..+.+..    ..+..              .+....++++|+|+++++.+..                 
T Consensus       171 ~~~~~~vtvID~~t~~v~----~qI~V--------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~  232 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH  232 (595)
T ss_dssp             GGEEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             cccCceEEEEECCCCeEE----EEEEe--------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence              2457899999876544    22221              0234567788999888876531                 


Q ss_pred             ----------------------eEEEEecCCC-Cce-eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-
Q 010933          345 ----------------------NLKLWDIRMD-STP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-  399 (497)
Q Consensus       345 ----------------------~i~lwd~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-  399 (497)
                                            .|.+.|.++. ++. +..+.....+                .++.++|||+++++++ 
T Consensus       233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P----------------hGv~~sPDGk~v~V~~~  296 (595)
T 1fwx_A          233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKKHLCVAGK  296 (595)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC----------------CCEEECTTSSEEEEECT
T ss_pred             EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc----------------eEEEEcCCCCEEEEeCC
Confidence                                  2445554420 111 3333332222                4799999999887666 


Q ss_pred             CCCcEEEEEcCCC
Q 010933          400 YSNLLRIFSHGVG  412 (497)
Q Consensus       400 ~dg~i~vw~~~~~  412 (497)
                      .+.+|.++|+.+.
T Consensus       297 ~s~~VsVid~~~~  309 (595)
T 1fwx_A          297 LSPTVTVLDVTRF  309 (595)
T ss_dssp             TSSBEEEEEGGGH
T ss_pred             CCCeEEEEECccc
Confidence            5889999999864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.43  E-value=6.5e-05  Score=64.90  Aligned_cols=187  Identities=13%  Similarity=0.014  Sum_probs=114.5

Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  282 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  282 (497)
                      +.++++..........+.|+. +.++.+. .+|.|+.+|++ +++....+ +.+.      .--..+++.  +..+.+..
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~~------~FgeGit~~--g~~Ly~lt  112 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLE-SAQPVWME-RLGN------IFAEGLASD--GERLYQLT  112 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSS-CSSCSEEE-ECTT------CCEEEEEEC--SSCEEEEE
T ss_pred             EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECC-CCcEEeEE-CCCC------cceeEEEEe--CCEEEEEE
Confidence            344555223334457888873 4455555 88889999999 45555443 2211      111234444  42555555


Q ss_pred             eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee
Q 010933          283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF  361 (497)
Q Consensus       283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~  361 (497)
                      -.++.+.+||..+.+.+    ..+..              ...-..  +.++++.|+.++ .+.|.++|..+ .+.+.++
T Consensus       113 w~~~~v~V~D~~Tl~~~----~ti~~--------------~~eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I  171 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQRE----RTTRY--------------SGEGWG--LCYWNGKLVRSDGGTMLTFHEPDG-FALVGAV  171 (268)
T ss_dssp             SSSCEEEEEETTTTEEE----EEEEC--------------SSCCCC--EEEETTEEEEECSSSEEEEECTTT-CCEEEEE
T ss_pred             ccCCEEEEEECCcCcEE----EEEeC--------------CCceeE--EecCCCEEEEECCCCEEEEEcCCC-CeEEEEE
Confidence            66899999999988765    34433              011133  346788877775 49999999987 7878777


Q ss_pred             eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-------------Ccceee
Q 010933          362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-------------KNENRK  428 (497)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-------------~~~v~~  428 (497)
                      .......          .+..++.+.|. +|+..+..-.++.|.+-|..+++.+ ..+...             .+-.+.
T Consensus       172 ~V~~~g~----------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~vlNG  239 (268)
T 3nok_A          172 QVKLRGQ----------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEAVLNG  239 (268)
T ss_dssp             ECEETTE----------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTCCEEE
T ss_pred             EeCCCCc----------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCCceEE
Confidence            6544321          11112467777 7765555556889999999998544 444322             134578


Q ss_pred             eEeecC
Q 010933          429 PILQAA  434 (497)
Q Consensus       429 ~~~~~~  434 (497)
                      +++.+.
T Consensus       240 IA~dp~  245 (268)
T 3nok_A          240 IAVEPG  245 (268)
T ss_dssp             EEECTT
T ss_pred             EEEcCC
Confidence            888874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.43  E-value=0.00038  Score=59.56  Aligned_cols=170  Identities=14%  Similarity=0.074  Sum_probs=103.4

Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC--CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  280 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  280 (497)
                      +.+..+..........+.|++ +.++.+. .+  ..|+.+|+. +++....+.+.     .+. --..++..  +..+..
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~-----~~~-fgeGi~~~--~~~ly~   79 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVP-----PPY-FGAGIVAW--RDRLIQ   79 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECC-----TTC-CEEEEEEE--TTEEEE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCC-----CCc-ceeEEEEe--CCEEEE
Confidence            455555233344567899986 5555554 43  599999999 55555554322     111 11234444  315555


Q ss_pred             EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933          281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  359 (497)
Q Consensus       281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~  359 (497)
                      ..-.++.+.+||..+.+.+    ..+..              ..  ....+.++++.|+.++ .+.|.++|..+ .+.+.
T Consensus        80 ltw~~~~v~v~D~~tl~~~----~ti~~--------------~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~  138 (243)
T 3mbr_X           80 LTWRNHEGFVYDLATLTPR----ARFRY--------------PG--EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVG  138 (243)
T ss_dssp             EESSSSEEEEEETTTTEEE----EEEEC--------------SS--CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEE
T ss_pred             EEeeCCEEEEEECCcCcEE----EEEeC--------------CC--CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEE
Confidence            5566899999999988765    44433              01  2233446777776664 48999999987 77777


Q ss_pred             eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      ++.......          .+..++.+.|. +|+..+..-.+..|.+.|..+++.+
T Consensus       139 ~I~V~~~g~----------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          139 SIKVTAGGR----------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             EEECEETTE----------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE
T ss_pred             EEEEccCCc----------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE
Confidence            776543321          11112456665 6665555556889999999998443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.40  E-value=0.0008  Score=58.42  Aligned_cols=178  Identities=12%  Similarity=0.126  Sum_probs=99.9

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933          215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  291 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~  291 (497)
                      ...-.+++.+++.++++. .++.+.++++.....  .......+.. ..........++|+|.+ +.|+++.......+|
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ-ESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVY  147 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS-SCCCSSCCEEEEEETTT-TEEEEEEESSSEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc-cccccCCcceEEEeCCC-CEEEEEECcCCceEE
Confidence            346678888888877777 888999998874443  2222221100 12345567999999998 667767665555666


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-Eec-CeEEEEecCCCCceeeeeeecccccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLKLWDIRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~  369 (497)
                      .++ +..-......... ..-.     -......+.+++++|....+.. ++. ..+..+|.+  ++.+..+.-..+.-.
T Consensus       148 ~~~-g~~~~~~l~i~~~-~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~  218 (255)
T 3qqz_A          148 KVN-GLLSSNELHISKD-KALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRG  218 (255)
T ss_dssp             EEE-STTCSSCCEEEEC-HHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGG
T ss_pred             EEc-ccccCCceeeecc-hhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCC
Confidence            554 2110001122111 0000     0001235789999997655544 433 889999976  566665543322100


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                          +  ...+-.--.++|.++|+ |+..++-+.+++|.-.
T Consensus       219 ----l--~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          219 ----L--SHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             ----C--SSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             ----c--ccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence                0  00000114899999998 5555787777777643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.40  E-value=2.3e-05  Score=67.74  Aligned_cols=146  Identities=10%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             CCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933          226 CETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  303 (497)
Q Consensus       226 ~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  303 (497)
                      ++.|.. . .++.+.+||.. ..+.+..+...     + .+    ..+++++ ..|+.+..++.|.++|..+.+..    
T Consensus        96 g~~ly~ltw~~~~v~v~D~~-t~~~~~ti~~~-----~-eG----~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~----  159 (262)
T 3nol_A           96 KDKIVGLTWKNGLGFVWNIR-NLRQVRSFNYD-----G-EG----WGLTHND-QYLIMSDGTPVLRFLDPESLTPV----  159 (262)
T ss_dssp             TTEEEEEESSSSEEEEEETT-TCCEEEEEECS-----S-CC----CCEEECS-SCEEECCSSSEEEEECTTTCSEE----
T ss_pred             CCEEEEEEeeCCEEEEEECc-cCcEEEEEECC-----C-Cc----eEEecCC-CEEEEECCCCeEEEEcCCCCeEE----
Confidence            444544 4 89999999998 45555554322     1 11    2334566 55665556789999999987654    


Q ss_pred             ceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccc
Q 010933          304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  382 (497)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (497)
                      ..+..... .       .....++.+.|. +|++.+..- .+.|.+.|.++ ++.+..+....-.-... .......+  
T Consensus       160 ~~I~V~~~-g-------~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~-~~~~~~~v--  226 (262)
T 3nol_A          160 RTITVTAH-G-------EELPELNELEWV-DGEIFANVWQTNKIVRIDPET-GKVTGIIDLNGILAEAG-PLPSPIDV--  226 (262)
T ss_dssp             EEEECEET-T-------EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT-CBEEEEEECTTGGGGSC-SCCSSCCC--
T ss_pred             EEEEeccC-C-------ccccccceeEEE-CCEEEEEEccCCeEEEEECCC-CcEEEEEECCcCccccc-cccCcCCc--
Confidence            22222000 0       001234567776 776554443 48999999987 88888886542110000 00000111  


Q ss_pred             eeEEEEcCCCCEEEEEeC
Q 010933          383 KFECSVSGDGLHFATGSY  400 (497)
Q Consensus       383 ~~~~~~s~~~~~l~s~~~  400 (497)
                      .+.++|+|+++.|+..+.
T Consensus       227 lNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          227 LNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEECC
Confidence            268999999888777765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.40  E-value=4.4e-05  Score=77.54  Aligned_cols=79  Identities=8%  Similarity=0.002  Sum_probs=53.8

Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeee
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~  363 (497)
                      +|.|+.||+.+++...    .+..              ..+.....+...+.+++.++ |+.++.||.++ ++.+.+++.
T Consensus       454 ~g~l~A~D~~tG~~~W----~~~~--------------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAW----EVPY--------------VTIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPA  514 (689)
T ss_dssp             EEEEEEEETTTTEEEE----EEEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             ceeEEEEECCCCCeEe----EccC--------------CCCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeC
Confidence            3778999999887542    1111              12233446667788888885 59999999997 999998876


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEE
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  396 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  396 (497)
                      ......              .-+.|..+|+..+
T Consensus       515 ~~~~~~--------------~p~ty~~~G~qyv  533 (689)
T 1yiq_A          515 ASGVMA--------------APVTYSVDGEQYV  533 (689)
T ss_dssp             SSCCCS--------------CCEEEEETTEEEE
T ss_pred             CCCccc--------------CceEEEECCEEEE
Confidence            654321              2477888887443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.38  E-value=0.0015  Score=60.33  Aligned_cols=173  Identities=9%  Similarity=-0.003  Sum_probs=99.5

Q ss_pred             CeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-CeEEEEE
Q 010933          216 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD  292 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~v~d  292 (497)
                      ....+++.+.+..|.. - ..+.|.+.+.+ +.....+       ....-.....++++|.+..++.+-... +.|..++
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            3467888875555544 4 67899999987 3322222       122234568999999762444444444 7888888


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                      +......    .....             .....+.++++|++..|..++.  +.|..+|+.  +.....+.......  
T Consensus       189 ~dG~~~~----~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~--  247 (349)
T 3v64_C          189 MDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH--  247 (349)
T ss_dssp             TTSCSCE----ESCCS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSS--
T ss_pred             CCCCCcE----EEEEC-------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCC--
Confidence            7653211    11111             0134688999998877777643  889999986  33222221111100  


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  431 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  431 (497)
                                  -..+++. ++..+++-...+.|..++..+++.. ..+.........+++
T Consensus       248 ------------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v  294 (349)
T 3v64_C          248 ------------PFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT  294 (349)
T ss_dssp             ------------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred             ------------ceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc-EEeccCCCCCceEEE
Confidence                        0467773 4555556666788999987676554 344333333334444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.36  E-value=7e-05  Score=64.68  Aligned_cols=198  Identities=9%  Similarity=0.014  Sum_probs=115.5

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .-...+.|.   ++.++.+.+.+|.|+++|+.+++..... .                                      
T Consensus        55 ~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--------------------------------------   92 (268)
T 3nok_A           55 AFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME-R--------------------------------------   92 (268)
T ss_dssp             CCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE-E--------------------------------------
T ss_pred             cccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--------------------------------------
Confidence            445788883   4567777788899999999998855422 1                                      


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                           ... ..--.+++.. +++.+.. .++.+.+||.. ..+.+..+...     +. +  ..
T Consensus        93 ---------------------~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~~-----~e-G--wG  140 (268)
T 3nok_A           93 ---------------------LGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRYS-----GE-G--WG  140 (268)
T ss_dssp             ---------------------CTT-CCEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEECS-----SC-C--CC
T ss_pred             ---------------------CCC-cceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeCC-----Cc-e--eE
Confidence                                 110 0111234332 2344445 89999999998 55666654322     11 1  23


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++  +++ ..|+.+..++.|.++|..+.+..    +.+.... ...       ....++.+.|. +|++.+..- .+.|.
T Consensus       141 Lt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V~~-~g~-------~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          141 LC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQVKL-RGQ-------PVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEECEE-TTE-------ECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             Ee--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEeCC-CCc-------ccccccccEEe-CCEEEEEECCCCeEE
Confidence            33  556 66776667999999999987655    2222200 000       01235667776 776554443 38999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      +.|.++ ++.+..+....-.............+  .+.++++|+++.|+..+.
T Consensus       205 vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~v--lNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          205 EIDPAT-GTVVGVIDASALTRAVAGQVTNPEAV--LNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTT-CBEEEEEECHHHHHHHTTTCCCTTCC--EEEEEECTTTCCEEEEET
T ss_pred             EEeCCC-CcEEEEEECCCCcccccccccCcCCc--eEEEEEcCCCCEEEEeCC
Confidence            999987 88888886542100000000001111  268999998766665554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.36  E-value=0.0008  Score=63.09  Aligned_cols=171  Identities=9%  Similarity=0.016  Sum_probs=98.6

Q ss_pred             eeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CC-CeEEEEE
Q 010933          217 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRLVD  292 (497)
Q Consensus       217 v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-g~i~v~d  292 (497)
                      ...+++.+.+..|.. - ..+.|.+.+++ +.....+       ....-.....++++|.+ ..|+.+. .. +.|..++
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEECSSSCEEEEEE
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEe-------ecCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEEEe
Confidence            456788875555544 4 67888888877 3322222       22223456899999976 4555444 44 7888888


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                      +......    .....             .....+.++++|++..|..++.  +.|..+|+.  +.....+.......  
T Consensus       232 ~dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~--  290 (386)
T 3v65_B          232 MDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH--  290 (386)
T ss_dssp             TTSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSS--
T ss_pred             CCCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCC--
Confidence            7653211    11111             0134688999988877777643  889999986  33222222111100  


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  431 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  431 (497)
                                  -..+++ ..+.++++-...+.|..++..+++.. ..+.........+++
T Consensus       291 ------------P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          291 ------------PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT  337 (386)
T ss_dssp             ------------EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred             ------------ceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence                        046777 34555566667888999997677554 444433333344444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.004  Score=64.49  Aligned_cols=239  Identities=9%  Similarity=0.039  Sum_probs=131.1

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCC---ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  290 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  290 (497)
                      ...|.++...++|.+-+...++-|..++.. .... ..+...+.   ........|.++..+++| . |..|+.++-|..
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGINFISNA-PPTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEEEECSS-CCSC-EEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEE
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEEEeCCC-CCcc-eeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEE
Confidence            456889988888876665577778888876 3322 22111000   011134678999998887 4 556776667889


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccccccc
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                      ||..++...     .+.. ..        ......|.++...++|.+.+...++.+..+|..+ ++ ...+... ..   
T Consensus       388 ~~~~~~~~~-----~~~~-~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~-~~---  447 (781)
T 3v9f_A          388 FENGKRVAI-----YNKE-NR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-KK-FQIIELE-KN---  447 (781)
T ss_dssp             EETTEEEEE-----CC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-CE-EEECCST-TT---
T ss_pred             EECCCCeEE-----EccC-CC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-Cc-EEEeccC-CC---
Confidence            998764321     1110 00        0112568888888888766644346788888764 33 3333211 00   


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-----CcceeeeEeecCCCcccccccce
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQAAPRARRSSLSNL  445 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~l  445 (497)
                              ....+.++...+++.+.+ |+. +-|..|+..+++.... ....     ...+.++...+  ++.+      
T Consensus       448 --------~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~--~g~l------  508 (781)
T 3v9f_A          448 --------ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHH-YDTSNSQLLENFVRSIAQDS--EGRF------  508 (781)
T ss_dssp             --------CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEE-ECTTTSSCSCSCEEEEEECT--TCCE------
T ss_pred             --------CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEec-ccCcccccccceeEEEEEcC--CCCE------
Confidence                    001125788888777555 444 5688999877643321 1111     24455555544  3332      


Q ss_pred             eEeec-cCceecCCCCCccccc-----ccCCCeEEEEEecCCCEEEEEeCCce-EEEe
Q 010933          446 TRGLY-RQAHENSSSGHHELSY-----NLSSKLLHLAWHPTTNLIACANGNSL-FFHY  496 (497)
Q Consensus       446 ~~~~~-d~~~iw~~~~~~~~~~-----~~~~~i~~l~~~p~~~~la~~~~~~~-~i~~  496 (497)
                      -.|.. .|...+..........     -....|.++...++|.+.+... +++ +.|+
T Consensus       509 Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          509 WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence            33333 3334442221111111     1245788999888888666544 777 7664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.35  E-value=9.8e-05  Score=63.20  Aligned_cols=210  Identities=9%  Similarity=0.055  Sum_probs=121.3

Q ss_pred             cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCC--ccEEEeecCchheeccccCCCCCcccccccc
Q 010933           86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  163 (497)
Q Consensus        86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  163 (497)
                      .++.+.++ .|++.          .-...+.|.  + +.++.+.+.+  ..|+.+|+.+++...........        
T Consensus         8 ~~~v~~~~-phd~~----------~ftqGL~~~--~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~--------   65 (243)
T 3mbr_X            8 GYRVVKRY-PHDTT----------AFTEGLFYL--R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY--------   65 (243)
T ss_dssp             CEEEEEEE-ECCTT----------CCEEEEEEE--T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC--------
T ss_pred             ceEEEEEc-CCCCc----------cccccEEEE--C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc--------
Confidence            34556666 66643          667789994  3 5566666664  48999999998865532211100        


Q ss_pred             ccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEe
Q 010933          164 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWN  241 (497)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd  241 (497)
                                                                          .--.+++.  ++.| +.. .++.+.+||
T Consensus        66 ----------------------------------------------------fgeGi~~~--~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           66 ----------------------------------------------------FGAGIVAW--RDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             ----------------------------------------------------CEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             ----------------------------------------------------ceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence                                                                01122332  3444 445 899999999


Q ss_pred             CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933          242 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  321 (497)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (497)
                      .. ..+.+..+...     + .+  ..++  +++ ..|+.+..++.|.++|..+.+..    +.+.... ...       
T Consensus        92 ~~-tl~~~~ti~~~-----~-~G--wglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V~~-~g~-------  147 (243)
T 3mbr_X           92 LA-TLTPRARFRYP-----G-EG--WALT--SDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKVTA-GGR-------  147 (243)
T ss_dssp             TT-TTEEEEEEECS-----S-CC--CEEE--ECS-SCEEEECSSSEEEEECTTTCCEE----EEEECEE-TTE-------
T ss_pred             CC-cCcEEEEEeCC-----C-Cc--eEEe--eCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEEcc-CCc-------
Confidence            98 55666654322     1 11  3343  556 55666666889999999987654    3332200 000       


Q ss_pred             ccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeeccccccccccc-CCCCCccceeEEEEcCCCCEEEEEe
Q 010933          322 IIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGS  399 (497)
Q Consensus       322 ~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~  399 (497)
                      .-..++.+.+. +|+..+.. ....|.+.|.++ ++.+..+....-.-.. ... .....+  .+.++++|+++.|+..+
T Consensus       148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~-~~~~~~~~~v--lNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          148 PLDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDA-DALTDSTNDV--LNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTT-TSCCCTTSSC--EEEEEEETTTTEEEEEE
T ss_pred             ccccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCcccc-ccccCCcCCc--eEEEEEcCCCCEEEEEC
Confidence            01234566665 67655444 348999999997 8888888754321000 000 001112  26899999877777666


Q ss_pred             C
Q 010933          400 Y  400 (497)
Q Consensus       400 ~  400 (497)
                      .
T Consensus       223 K  223 (243)
T 3mbr_X          223 K  223 (243)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.33  E-value=0.00061  Score=70.08  Aligned_cols=74  Identities=14%  Similarity=0.157  Sum_probs=42.3

Q ss_pred             CCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCc-ee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC---
Q 010933          215 FNINSISNNSDCETFVSA----DDLRINLWNLEISD-QC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---  285 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---  285 (497)
                      .....+.|+|||+.|+..    ....|+++|+.... .. ...+      .........++.|+..+ .+++....+   
T Consensus       271 ~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~  343 (751)
T 2xe4_A          271 LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV------RPREKGVRYDVQMHGTS-HLVILTNEGGAV  343 (751)
T ss_dssp             TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES------SCCCTTCCEEEEEETTT-EEEEEECTTTCT
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe------ecCCCCceEEEeeeeCC-EEEEEeCCCCCC
Confidence            345678999999988764    24578888887431 22 0221      22334555666655443 444444443   


Q ss_pred             -CeEEEEEccC
Q 010933          286 -GFVRLVDMRQ  295 (497)
Q Consensus       286 -g~i~v~d~~~  295 (497)
                       ..|..+|+.+
T Consensus       344 ~~~L~~~d~~~  354 (751)
T 2xe4_A          344 NHKLLIAPRGQ  354 (751)
T ss_dssp             TCEEEEEETTS
T ss_pred             CcEEEEEcCCC
Confidence             2566667654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.26  E-value=0.00033  Score=69.36  Aligned_cols=59  Identities=8%  Similarity=0.016  Sum_probs=41.3

Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      +.|..||+.+ ++.+.++......                ....+...+..++.++.||.|+.||.++++.+ ..++
T Consensus       444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l-w~~~  502 (571)
T 2ad6_A          444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL-WNFK  502 (571)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred             CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCEE-EEEe
Confidence            6888999886 7777777644321                12223334667888999999999999998665 4444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.22  E-value=0.00022  Score=72.28  Aligned_cols=76  Identities=13%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             EEEEcC-CCCEEEEeecCC-----------eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCcccccc
Q 010933           37 AIEFDK-TGDYLAVGDRGG-----------RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYL  103 (497)
Q Consensus        37 ~i~~sp-~g~~lasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~  103 (497)
                      ++++.| +|++++.|+.+.           .+.+||..+++-                     ..+..+.. +.      
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w---------------------~~~~~~~~~~~------  242 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV---------------------SDRTVTVTKHD------  242 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB---------------------CCCEEEECSCC------
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE---------------------EeCcccCCCCC------
Confidence            556677 888888887543           578888877642                     22222211 11      


Q ss_pred             cccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheec
Q 010933          104 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK  147 (497)
Q Consensus       104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~  147 (497)
                            ....++++  ..++..++.|+ .+..+.+||..+++...
T Consensus       243 ------~~~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~  279 (656)
T 1k3i_A          243 ------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIP  279 (656)
T ss_dssp             ------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred             ------CccccccC--CCCCCEEEeCCCCCCceEEecCcCCceeE
Confidence                  22334566  47888888887 45689999988776543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.0015  Score=62.11  Aligned_cols=71  Identities=10%  Similarity=0.171  Sum_probs=48.5

Q ss_pred             eeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcE-EEEEeCCCeEEEEEc
Q 010933          217 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL-LAYSSSRGFVRLVDM  293 (497)
Q Consensus       217 v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i~v~d~  293 (497)
                      ...++++| +|.++++- .++.|..++.. .+.......     .. .......++|+|++ ++ +++-...+.|..++.
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeC
Confidence            45678999 77766676 88999999987 443322211     11 12456899999999 74 444456789999887


Q ss_pred             cC
Q 010933          294 RQ  295 (497)
Q Consensus       294 ~~  295 (497)
                      ..
T Consensus       300 d~  301 (430)
T 3tc9_A          300 DW  301 (430)
T ss_dssp             ET
T ss_pred             Cc
Confidence            63

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.20  E-value=0.0008  Score=61.40  Aligned_cols=162  Identities=11%  Similarity=0.022  Sum_probs=97.2

Q ss_pred             CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCC-------------ccCCCCCCeEEEEEeC-CCCcEEE
Q 010933          216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-------------NMDDLTEVITSAEFHP-IYCNLLA  280 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~-~~~~~l~  280 (497)
                      ...++++.++++++.++ .++.|..|+.. .+.... +.....             ........+..+++++ ++  .|+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--~l~   95 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGP-NSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--QLY   95 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCT-TTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--EEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCC-CCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCC--cEE
Confidence            45678899999878888 89999999887 333222 111000             0001123578999998 55  455


Q ss_pred             EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe-----------------
Q 010933          281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-----------------  342 (497)
Q Consensus       281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-----------------  342 (497)
                      ++...+.|..+|..++..     +.+......        ......+.+++.+ +|++.++-.                 
T Consensus        96 v~d~~~~i~~~d~~~g~~-----~~~~~~~~~--------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-----TQLATSVDG--------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-----EEEESEETT--------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             EEECCCCEEEEeCCCCEE-----EEecccCCC--------CcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence            565556688888775532     111110000        0012367899999 998777642                 


Q ss_pred             -cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 010933          343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV  411 (497)
Q Consensus       343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~  411 (497)
                       .+.|..||... ++..........+                ..++|+|+++.|+.+ +..+.|.+|++..
T Consensus       163 ~~g~v~~~d~~~-~~~~~~~~~~~~p----------------~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          163 KTGRLIKYDPST-KETTLLLKELHVP----------------GGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CCEEEEEEETTT-TEEEEEEEEESCC----------------CEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CCceEEEEeCCC-CEEEEeccCCccC----------------cceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence             15688888754 4322222221111                479999999866655 5578999999875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.19  E-value=0.00084  Score=58.28  Aligned_cols=219  Identities=12%  Similarity=0.169  Sum_probs=121.4

Q ss_pred             cceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc--ccccCcccccccccccc
Q 010933           33 DIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        33 ~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~~~~~  109 (497)
                      +.+..++++|+++.| ++...++.|...|.+ ++.                       +..  +.+.             
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-----------------------~~~i~l~g~-------------   69 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-----------------------IRTIPLDFV-------------   69 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-----------------------EEEEECSSC-------------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-----------------------EEEEecCCC-------------
Confidence            479999999986655 456778888888887 432                       222  2221             


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .....|++  .+++.++++.-.++.+.++++.........                                        
T Consensus        70 ~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~----------------------------------------  107 (255)
T 3qqz_A           70 KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKIL----------------------------------------  107 (255)
T ss_dssp             SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEE----------------------------------------
T ss_pred             CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeee----------------------------------------
Confidence            23667888  567766666557788888887654311100                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc--cCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                         .....       ...  ........-.++|+|.++.|.++ ......+|.++  .....+.+.+.+...-..+-..+
T Consensus       108 ---~~~~~-------~~~--~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A          108 ---KKIKI-------PLQ--ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             ---EEEEC-------CCS--SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             ---eeecc-------ccc--cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence               00000       000  01234457899999988777666 44344444443  11112222211000001123457


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  346 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i  346 (497)
                      .+++++|...++++....++.|.++|... +..    ..+........    +..-....-.|+|.++|++.+++.-+.+
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~----~~~~L~~g~~~----l~~~~~qpEGia~d~~G~lyIvsE~n~~  246 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRALQEVTLVG-EVI----GEMSLTKGSRG----LSHNIKQAEGVAMDASGNIYIVSEPNRF  246 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTC-CEE----EEEECSTTGGG----CSSCCCSEEEEEECTTCCEEEEETTTEE
T ss_pred             eeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEE----EEEEcCCccCC----cccccCCCCeeEECCCCCEEEEcCCceE
Confidence            89999998746677777788999999764 332    22222000000    0000134678999999987777554766


Q ss_pred             EEEec
Q 010933          347 KLWDI  351 (497)
Q Consensus       347 ~lwd~  351 (497)
                      +.+.-
T Consensus       247 y~f~~  251 (255)
T 3qqz_A          247 YRFTP  251 (255)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.13  E-value=0.0048  Score=56.27  Aligned_cols=156  Identities=12%  Similarity=0.061  Sum_probs=82.0

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE-EEcc
Q 010933          216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL-VDMR  294 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v-~d~~  294 (497)
                      .+..+.+.+++..++.+.++.|+.  -...++..+.+      .......+..+++.|++ .+++++. +|.+.. .|- 
T Consensus       123 ~~~~i~~~~~~~~~~~~~~g~v~~--S~DgG~tW~~~------~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~-  191 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMITNVGAIYR--TKDSGKNWQAL------VQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEP-  191 (327)
T ss_dssp             CEEEEEEEETTEEEEEETTCCEEE--ESSTTSSEEEE------ECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECT-
T ss_pred             CeEEEEEECCCCEEEEeCCccEEE--EcCCCCCCEEe------ecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCC-
Confidence            456676666676666665555432  22234444432      12344578899999987 7766554 444433 332 


Q ss_pred             CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccccccccccc
Q 010933          295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  374 (497)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  374 (497)
                      .++.-    .....            .....+..+.+.+++++++++.+|.+++.+... ++.-..+......       
T Consensus       192 gG~tW----~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~~~-------  247 (327)
T 2xbg_A          192 GQTAW----EPHNR------------TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRR-------  247 (327)
T ss_dssp             TCSSC----EEEEC------------CSSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEECCCBCTTSS-------
T ss_pred             CCCce----eECCC------------CCCCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeEeccCCccc-------
Confidence            12111    11110            012457888899999888777778877764221 3322222211000       


Q ss_pred             CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                          ....+..+.+.+++..++++. +|.| ++..+.+
T Consensus       248 ----~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          248 ----NSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             ----CCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred             ----CCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence                000125788988877666654 5655 3343433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.09  E-value=0.0032  Score=59.92  Aligned_cols=180  Identities=9%  Similarity=0.051  Sum_probs=93.0

Q ss_pred             CeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE-EeCCCeEEEE
Q 010933          216 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLV  291 (497)
Q Consensus       216 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~v~  291 (497)
                      ....++++| +|.+.++- .++.|+.++.. .+.. ..+..     . +.......++++|++ +.|+. -...+.|+.+
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~-----~-~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVM-----M-DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEE-----C-SCCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEec-----c-CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence            345678899 67666666 78899999987 3333 22211     1 112233579999999 74544 4557899998


Q ss_pred             EccC--CcccccccceecccccccCCcc--ccccccccccEEEE---------eeCCCEEEEEec-CeEEEEecCCCCce
Q 010933          292 DMRQ--SALCDHSARILRDAAESHGSKS--FFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP  357 (497)
Q Consensus       292 d~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~---------s~~g~~l~~~~~-~~i~lwd~~~~~~~  357 (497)
                      ++..  +...  ....+.+.........  .....-.....+++         .++|.++++-.. +.|+.++..  + .
T Consensus       301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~  375 (433)
T 4hw6_A          301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-R  375 (433)
T ss_dssp             EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-E
T ss_pred             eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-C
Confidence            8753  2211  0011111000000000  00000123567888         666665555443 889988852  5 3


Q ss_pred             eeeeeeccc-----ccccccccCCCCCccceeEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 010933          358 VATFKIHEH-----LRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       358 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      +.++.+...     ....  ..........-..++++ +++.++++=...++|+.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG--~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDG--ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCE--ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCC--ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            444433211     0000  00000011112579999 566666666667788888764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.04  E-value=0.00053  Score=70.50  Aligned_cols=118  Identities=13%  Similarity=0.070  Sum_probs=73.0

Q ss_pred             CCCC-CeeEEEeC-CCCCEEEEE--cCC----eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933          212 AHDF-NINSISNN-SDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  283 (497)
Q Consensus       212 ~h~~-~v~~~~~~-~~~~~l~~~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  283 (497)
                      +|.. .+...+|| |||+.|+.+  .+|    .|+++|+.++...+.      ..+   ......++|+|+| +.|+...
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~~~---~~~~~~~~WspDg-~~l~y~~  239 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------DKV---SGTNGEIVWGPDH-TSLFYVT  239 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------CCE---EEECSCCEECSST-TEEEEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------ccc---cCceeeEEEecCC-CEEEEEE
Confidence            4443 57789999 999999875  233    599999984303211      001   1123467899999 7777666


Q ss_pred             CC-----CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----cCeEEEEecCC
Q 010933          284 SR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRM  353 (497)
Q Consensus       284 ~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~lwd~~~  353 (497)
                      .|     ..|.++++.++....  ..++.. .           .......+.|+|||++|+...    ...|+++|+..
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~--~lv~~~-~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSED--VCLYEE-H-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGC--EEEEEC-C-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             ECCCCCCCEEEEEECCCCchhc--EEEEec-C-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            54     257778887653211  022221 0           012346788999999988753    25788889875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.03  E-value=0.0013  Score=65.27  Aligned_cols=59  Identities=8%  Similarity=0.003  Sum_probs=38.5

Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      |.|..||+.+ ++.+.+.......                ..-.....+.+++.++.||.++.||.++++.+ ..++
T Consensus       453 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l-W~~~  511 (599)
T 1w6s_A          453 GQIKAYNAIT-GDYKWEKMERFAV----------------WGGTMATAGDLVFYGTLDGYLKARDSDTGDLL-WKFK  511 (599)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred             CeEEEEECCC-CCEEeEecCCCCc----------------cCcceEecCCEEEEECCCCeEEEEECCCCCEE-EEee
Confidence            5677788876 6766665432111                11112235677888999999999999999665 4444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.00  E-value=0.0014  Score=64.87  Aligned_cols=60  Identities=18%  Similarity=0.147  Sum_probs=41.6

Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                      |.|..||+.+ ++.+.+.......                ..-.....+.+++.|+.||.++.||.++++.+ ..++.
T Consensus       466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l-W~~~~  525 (582)
T 1flg_A          466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL-WKFQT  525 (582)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred             ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCCEE-EEecC
Confidence            7789999987 7877776644321                11122224668888999999999999999665 44443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.92  E-value=0.012  Score=53.35  Aligned_cols=158  Identities=10%  Similarity=0.010  Sum_probs=95.1

Q ss_pred             CeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-C-CeEEEE
Q 010933          216 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRLV  291 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~v~  291 (497)
                      ....+++.+.+..|. +- ..+.|.+++.. +.....++       .........++++|.+ ..|+.+.. . +.|...
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~~  148 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKG  148 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCC-CEEEEEccCCCCeEEEE
Confidence            346788886555554 44 78899999987 33322221       1123456899999976 45554444 3 688888


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeec-cccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHLR  368 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~-~~~~  368 (497)
                      ++.... .    +.+..            ..-...+.++++|++..|..++.  +.|..+|+.  +.....+... ....
T Consensus       149 ~~dG~~-~----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~  209 (316)
T 1ijq_A          149 GLNGVD-I----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA  209 (316)
T ss_dssp             ETTSCC-E----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS
T ss_pred             cCCCCC-e----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCccC
Confidence            875422 1    11111            00134688999998887777643  799999986  3333333221 1100


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                                .   -..+++. .+.++++-...+.|..++..+++..
T Consensus       210 ----------~---P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          210 ----------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             ----------S---EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             ----------C---cEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence                      0   0467775 3555556667789999998777554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.84  E-value=0.021  Score=53.64  Aligned_cols=174  Identities=9%  Similarity=0.009  Sum_probs=101.9

Q ss_pred             CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEE
Q 010933          215 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v  290 (497)
                      .....+++.+.+..|.. - ..+.|.+.+++ +.....+       +.........++++|.+ ..|+....  .+.|..
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l-------~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEE-------EECSSCCEEEEEEETTT-TEEEEEECSSSCCEEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEE-------EeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEE
Confidence            45678888875555544 4 78899999987 4333322       12223456899999976 55555543  368888


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeec-ccc
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHL  367 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~-~~~  367 (497)
                      .++......    .....             .-...+.|++++++..|+.++.  +.|..+|+.  +.....+... ...
T Consensus       230 ~~~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l  290 (400)
T 3p5b_L          230 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL  290 (400)
T ss_dssp             EETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTT
T ss_pred             EeCCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCC
Confidence            887653221    11111             0135688999998888877743  889999986  3333333221 111


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  431 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  431 (497)
                      .          .   -..+++. .+.++.+-...+.|..++..+++.. ..+.........+++
T Consensus       291 ~----------~---P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          291 A----------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV-NLLAENLLSPEDMVL  339 (400)
T ss_dssp             S----------S---EEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC-EEEECSCSCEEEEEE
T ss_pred             C----------C---CEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce-EEEecCCCCCceEEE
Confidence            0          0   0356663 3345556666788999997777555 444433333344443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.84  E-value=0.0082  Score=59.37  Aligned_cols=25  Identities=4%  Similarity=0.098  Sum_probs=20.5

Q ss_pred             CCEEEEEeCCccEEEeecCchheec
Q 010933          123 GSMFILSTNDKTIKLWKVRDQKVKK  147 (497)
Q Consensus       123 ~~~l~s~s~d~~i~iw~~~~~~~~~  147 (497)
                      +..++.++.|+.+..+|..+|+...
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEE
Confidence            4578888889999999999888544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.83  E-value=0.054  Score=58.04  Aligned_cols=121  Identities=8%  Similarity=0.087  Sum_probs=67.9

Q ss_pred             cEEEEEe----------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933          277 NLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  346 (497)
Q Consensus       277 ~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i  346 (497)
                      .+|++|+          ..|.|++|++..+++.    .+.+.            ...+++++++-- +| +|++|-...|
T Consensus       845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~----lv~~~------------~v~g~v~al~~~-~g-~Lla~ig~~l  906 (1158)
T 3ei3_A          845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ----TVAEK------------EVKGAVYSMVEF-NG-KLLASINSTV  906 (1158)
T ss_dssp             CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE----EEEEE------------EESSCEEEEEEE-TT-EEEEEETTEE
T ss_pred             EEEEEEeeecCCCCCCCCceEEEEEEEECCEEE----EEEEE------------EcCCcCEEEeee-CC-EEEEEcCCEE
Confidence            6888886          3588999999743321    11111            123567777643 45 6777767999


Q ss_pred             EEEecCCCCceee-eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc--C
Q 010933          347 KLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--K  423 (497)
Q Consensus       347 ~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~--~  423 (497)
                      ++|++.. .+.+. ....... +               ..+.....+.+++.|..-..+.++..+........+..+  .
T Consensus       907 ~vy~l~~-~~~L~~~~~~~~~-i---------------~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~  969 (1158)
T 3ei3_A          907 RLYEWTT-EKELRTECNHYNN-I---------------MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP  969 (1158)
T ss_dssp             EEEEECT-TSCEEEEEEECCC-S---------------CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred             EEEECCC-CceEEEEeecccc-E---------------EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccc
Confidence            9999975 44333 1111111 1               122333357789999987787776655433333333333  3


Q ss_pred             cceeeeEee
Q 010933          424 NENRKPILQ  432 (497)
Q Consensus       424 ~~v~~~~~~  432 (497)
                      ..+.++.+-
T Consensus       970 ~~vta~~~l  978 (1158)
T 3ei3_A          970 NWMSAVEIL  978 (1158)
T ss_dssp             BCEEEEEEE
T ss_pred             ccEEEEEEE
Confidence            344455554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=0.015  Score=55.19  Aligned_cols=154  Identities=8%  Similarity=0.015  Sum_probs=90.8

Q ss_pred             CeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CC----eE
Q 010933          216 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----FV  288 (497)
Q Consensus       216 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg----~i  288 (497)
                      ....++++| ++..|..+ ..+.|+.+|.. .+....+.        ........+++++++ +.|+++.. ++    .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~--------~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v  207 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY--------SGLSKVRTICWTHEA-DSMIITNDQNNNDRPNN  207 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE--------CCCSCEEEEEECTTS-SEEEEEECCSCTTSEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe--------cCCCCcceEEEeCCC-CEEEEEeCCCCcccceE
Confidence            556889998 35556555 44889999987 44443331        234567899999999 75555554 22    23


Q ss_pred             EEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933          289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      .+++ ..+.....  ..+..              ......++++| +|.++++-. .+.|..++... +...........
T Consensus       208 ~~~~-~~g~~~~~--~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~  269 (430)
T 3tc9_A          208 YILT-RESGFKVI--TELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDS  269 (430)
T ss_dssp             EEEE-GGGTSCSE--EEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSS
T ss_pred             EEEe-CCCceeee--eeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCC
Confidence            3344 33322110  11111              13467889999 666555543 38999999864 332122211111


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV  411 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~  411 (497)
                      ..              -..++|+|++++|+ +-...+.|..++.+.
T Consensus       270 ~~--------------P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          270 GW--------------EFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SC--------------CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             Cc--------------ceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            00              05899999999555 445678899988763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.76  E-value=0.023  Score=51.71  Aligned_cols=159  Identities=8%  Similarity=-0.003  Sum_probs=89.0

Q ss_pred             CCCCeeEEEeCCCCCEEEEEcCCeEEE-EeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933          213 HDFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  291 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~  291 (497)
                      ....+..+.+.+++..++.+.++.++. .|-  .+...+.+.      ......+..+.+.+++ .++ .++.+|.+++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s  230 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFS  230 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEEe
Confidence            344678899999998888885555444 332  133333221      1244678899999987 554 55678888776


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL  371 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~  371 (497)
                      +...++       .+..... +.    + .....+..+.+.+++.+++++.++.+ ++.... ++.-..+......-   
T Consensus       231 ~~D~G~-------tW~~~~~-~~----~-~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~~~~~---  292 (327)
T 2xbg_A          231 DPDNSE-------NWGELLS-PL----R-RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDVKKVP---  292 (327)
T ss_dssp             ETTEEE-------EECCCBC-TT----S-SCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGGTTSS---
T ss_pred             cCCCCC-------eeEeccC-Cc----c-cCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCccCCCC---
Confidence            533232       2221000 00    0 00134788889888888888877766 344432 43333332111000   


Q ss_pred             cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                            ..   +.++.|.++++ +++++.+|.|.-++-
T Consensus       293 ------~~---~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          293 ------SN---FYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             ------SC---CCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             ------CC---eEEEEEECCCc-eEEEcCCceEEEEcC
Confidence                  01   14788875554 667778898776653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.73  E-value=0.0097  Score=55.67  Aligned_cols=157  Identities=9%  Similarity=-0.050  Sum_probs=94.8

Q ss_pred             CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          215 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      ..+..++|.+.+..|.. - ..+.|+.++.. +.....++       .........+++++.+..++++-...+.|.+.+
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~  187 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  187 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence            35778999976555554 4 78899999988 33332221       112234467889876525555555678888888


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c-CeEEEEecCCCCceeeeeeecccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~  369 (497)
                      +......    ..+..             .......++++|.+..|+.++  . +.|..+++.  +.....+....... 
T Consensus       188 ~dg~~~~----~l~~~-------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~-  247 (386)
T 3v65_B          188 LDGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW-  247 (386)
T ss_dssp             TTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSC-
T ss_pred             CCCCceE----EeecC-------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC-
Confidence            7643211    11111             013468899999877776654  3 667777775  44333332111100 


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 010933          370 KLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  412 (497)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~  412 (497)
                                   -..++|+|++..|+.+. ..+.|..++++..
T Consensus       248 -------------PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          248 -------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             -------------EEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             -------------eeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence                         15899998776666554 5678999998643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.72  E-value=0.026  Score=51.89  Aligned_cols=156  Identities=9%  Similarity=-0.039  Sum_probs=95.3

Q ss_pred             CeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          216 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      .+..++|.+.+..|..+  ..+.|+.++.. +.....++       .........+++++.+.+++++-...+.|.+.++
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~  145 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  145 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecC-CCCceEEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence            47789999766555554  78899999988 33322221       1122345788999865255555566789999998


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c-CeEEEEecCCCCceeeeeeeccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                      ......    .....             .......++++|.+..|+..+  . +.|..+++.  +.....+.......  
T Consensus       146 dG~~~~----~l~~~-------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~--  204 (349)
T 3v64_C          146 DGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW--  204 (349)
T ss_dssp             TSCSCE----EEECT-------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCSC--
T ss_pred             CCCceE----EEEeC-------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC--
Confidence            754211    11111             013468899999777666654  3 667777775  43333332111100  


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  412 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~  412 (497)
                                  -..++++|++..|+.+. ..+.|..++++..
T Consensus       205 ------------PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          205 ------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             ------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ------------cceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence                        15899998777666554 4678999998753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.69  E-value=0.029  Score=50.80  Aligned_cols=157  Identities=11%  Similarity=0.036  Sum_probs=94.1

Q ss_pred             CeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEEE
Q 010933          216 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLV  291 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v~  291 (497)
                      ....+++.+.+..|.. - ..+.|.+++.+ +.....+       ..........++++|.+ ..|+.+..  .+.|...
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~  150 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA  150 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEE
Confidence            4557888875555544 4 77899999987 3322222       12233456899999976 55555543  5788888


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeecccccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~  369 (497)
                      ++.....     ..+.. .           .-...+.++++|++..|..++.  +.|..+|+.  +.....+....... 
T Consensus       151 ~~dG~~~-----~~~~~-~-----------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~-  210 (318)
T 3sov_A          151 GMDGSSR-----FIIIN-S-----------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH-  210 (318)
T ss_dssp             ETTSCSC-----EEEEC-S-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSC-
T ss_pred             EcCCCCe-----EEEEE-C-----------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCC-
Confidence            8764321     11111 0           0134588999998877777643  889999986  33333332111100 


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                                   -..+++.. +.++.+-...+.|..++..+++..
T Consensus       211 -------------P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          211 -------------PFALTLFE-DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             -------------EEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             -------------ceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence                         03677753 345555556789999998777554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.64  E-value=0.017  Score=58.43  Aligned_cols=63  Identities=6%  Similarity=0.024  Sum_probs=43.5

Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeee
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~  363 (497)
                      +|.|..||+.+++...+    ...              ........+...+.+++.++ ++.++.||.++ ++.+..++.
T Consensus       437 ~g~l~A~D~~tG~~~W~----~~~--------------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWK----VPY--------------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEEEEE----EEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             cceEEEEeCCCCcEEEE----ccC--------------CCCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecC
Confidence            37899999998875421    111              12233344556778888885 49999999987 898888876


Q ss_pred             ccc
Q 010933          364 HEH  366 (497)
Q Consensus       364 ~~~  366 (497)
                      ...
T Consensus       498 ~~~  500 (668)
T 1kv9_A          498 QSG  500 (668)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.63  E-value=0.062  Score=53.16  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=20.6

Q ss_pred             CCEEEEEeCCccEEEeecCchheec
Q 010933          123 GSMFILSTNDKTIKLWKVRDQKVKK  147 (497)
Q Consensus       123 ~~~l~s~s~d~~i~iw~~~~~~~~~  147 (497)
                      +..++.++.|+.|..+|..+|+...
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W  141 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVW  141 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEe
Confidence            4578888899999999999988654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.61  E-value=0.084  Score=54.08  Aligned_cols=158  Identities=8%  Similarity=-0.003  Sum_probs=95.4

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-C-CeEEE
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~v  290 (497)
                      .....|++.+.++.|+.+  ..+.|.+.+++ +.....+       +.........|+++|.+ ..|+.+.. . +.|..
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l-------~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~  541 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK  541 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEE-------EeCCCCCcceEEEecCC-CCEEEecCCCCCeEEE
Confidence            345678888877666655  78899999988 4333222       12233457899999986 55555543 3 68888


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeee-ecccc
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK-IHEHL  367 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~-~~~~~  367 (497)
                      .++......    .....             .....+.|++++.+..|+.++.  +.|..+++.  +.....+. .....
T Consensus       542 ~~~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l  602 (791)
T 3m0c_C          542 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL  602 (791)
T ss_dssp             EETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTT
T ss_pred             EecCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCcc
Confidence            888654321    11111             0135788999988777777643  788888885  44333332 21111


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcc
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~  415 (497)
                      .          .   -..|++.  +..|+ +-...+.|...+..+++.+
T Consensus       603 ~----------~---P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          603 A----------H---PFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             S----------S---EEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             C----------C---CCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence            0          0   0356653  33444 4445688888887777555

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.59  E-value=0.031  Score=51.05  Aligned_cols=167  Identities=10%  Similarity=0.052  Sum_probs=93.1

Q ss_pred             CeeEEEeCCCCCEEEEE-------------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC--CCCcEEE
Q 010933          216 NINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLA  280 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~  280 (497)
                      ..-++...|+|..++++             .+|.|.++|.+........+......+....-....+.+.+  ++...|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34566677887666664             58899999987332222222111100222345677888766  3422444


Q ss_pred             EE-eC--CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----c----------
Q 010933          281 YS-SS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y----------  343 (497)
Q Consensus       281 ~~-~~--dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~----------  343 (497)
                      ++ ..  +..|.+|++............++..            .-...+.+.+.++|.+.++..    +          
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~  198 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  198 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCT------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccC------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence            44 33  4678888876543222222222220            014578999999998877753    1          


Q ss_pred             --CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q 010933          344 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV  411 (497)
Q Consensus       344 --~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~  411 (497)
                        ..-++|.+.. ++......+-..+                +.++|+||++.|+.+. ..++|+.|++..
T Consensus       199 ~~~~g~vyr~d~-~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          199 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TCCCEEEEEECT-TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCccEEEEEEC-CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              1233444432 3222222222211                6899999998877665 578999999874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.55  E-value=0.0064  Score=57.78  Aligned_cols=170  Identities=9%  Similarity=-0.024  Sum_probs=88.4

Q ss_pred             CCeeEEEeCCCCCEEEEEcCC-----eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC-CCCcEEEEEeCCCeE
Q 010933          215 FNINSISNNSDCETFVSADDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFV  288 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i  288 (497)
                      .....++++++|+++++...+     .+...+..........       +. .-.....++++| ++ .++++-..++.|
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~-------~~-~~~~P~giavd~~~G-~lyv~d~~~~~V  252 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS-------LC-NARGAKTCAVHPQNG-KIYYTRYHHAMI  252 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE-------EE-ECSSBCCCEECTTTC-CEEECBTTCSEE
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc-------cc-ccCCCCEEEEeCCCC-eEEEEECCCCEE
Confidence            457889999999955554321     2333333211110011       11 123346788999 66 655555567899


Q ss_pred             EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCC-Cce--eeeeee
Q 010933          289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD-STP--VATFKI  363 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~-~~~--~~~~~~  363 (497)
                      +.+|..++....   ..+.. ..           ...-..++|+|+|++|..++ . +.|+.++.... +..  ...+.+
T Consensus       253 ~~~d~~~g~~~~---~~~~~-~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag  317 (433)
T 4hw6_A          253 SSYDPATGTLTE---EEVMM-DT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG  317 (433)
T ss_dssp             EEECTTTCCEEE---EEEEC-SC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred             EEEECCCCeEEE---EEecc-CC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence            999988664311   11111 00           11234699999999776664 3 88999887531 211  122222


Q ss_pred             cccccccccc-cCCCCCccceeEEEE---------cCCCCEEEEEeCCCcEEEEEc
Q 010933          364 HEHLRPKLCD-LYNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       364 ~~~~~~~~~~-~~~~~~~~~~~~~~~---------s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      ..... ...+ .........-..+++         .+++.++++-...++|+.++.
T Consensus       318 ~~g~~-g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          318 QHSSP-GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             CTTCC-CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             cCCCC-ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            21000 0000 000000111146888         667777766667778888874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.52  E-value=0.027  Score=50.83  Aligned_cols=150  Identities=9%  Similarity=0.096  Sum_probs=85.1

Q ss_pred             CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--eCCCCc-EEEEEeCCCeEEEEEcc---CCcccccccceec
Q 010933          234 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMR---QSALCDHSARILR  307 (497)
Q Consensus       234 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~-~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~  307 (497)
                      +++|.+|++......+..+.-....+..-...+..+++  +|.... ++++...+|.+..|++.   .++...+.++.+.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            68999997742222333320000000011155677787  674313 67778889999999984   3323333334554


Q ss_pred             ccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCC----CceeeeeeecccccccccccCCCCCccc
Q 010933          308 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFD  382 (497)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (497)
                      .              .+.+-.+...+....|+.+.+ ..|..++.+..    .+.+..+.. ...            ..+
T Consensus       178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l------------~aD  230 (355)
T 3amr_A          178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHL------------TRD  230 (355)
T ss_dssp             C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSB------------CSC
T ss_pred             C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-Ccc------------ccC
Confidence            4              246778889988888888865 44666665421    223333321 111            011


Q ss_pred             eeEEEE--cCCCC-EEEEEe-CCCcEEEEEcC
Q 010933          383 KFECSV--SGDGL-HFATGS-YSNLLRIFSHG  410 (497)
Q Consensus       383 ~~~~~~--s~~~~-~l~s~~-~dg~i~vw~~~  410 (497)
                      +-.+++  .++++ +|++.+ .++...+||.+
T Consensus       231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            245666  55666 677666 47799999997

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.46  E-value=0.02  Score=51.18  Aligned_cols=182  Identities=10%  Similarity=0.013  Sum_probs=104.8

Q ss_pred             CCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc-CCCCCCeEEEEE---eCCCCcEEEEEeC-
Q 010933          212 AHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEF---HPIYCNLLAYSSS-  284 (497)
Q Consensus       212 ~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~---~~~~~~~l~~~~~-  284 (497)
                      ......-+++|.+ ++.++++. ..++|..|+.. .+....+ ..+.... ......+..+.|   .|++ .++++... 
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~   86 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA   86 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence            3344556789977 55555666 89999999987 3433333 1110000 001123578999   6887 77775442 


Q ss_pred             ------------CCeEEEEEcc---CCcccccccceecccccccCCcccccc-ccccccEEEEeeCCCEEEEEec--CeE
Q 010933          285 ------------RGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDY--MNL  346 (497)
Q Consensus       285 ------------dg~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~--~~i  346 (497)
                                  +..|..||+.   +++...    .......... .+...+ -....+.++..++|+..++++.  +.|
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~----~~dL~~~~~~-~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVW----SVNFEKVQDE-FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI  161 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSE----EEESHHHHHH-HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEE----EecCcccccc-ccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence                        6789999998   665431    1111000000 000000 0124789999999998887653  555


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      ...+.  +++.+..+........         .....+.++++|+|+.|++....|.|..+|+.+.
T Consensus       162 ~rV~p--dG~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          162 ARVSA--DGKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECT--TSCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EEEeC--CCCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            55554  3554443322221100         1111258999999999988877999999998843

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.45  E-value=0.06  Score=48.64  Aligned_cols=122  Identities=7%  Similarity=0.015  Sum_probs=69.7

Q ss_pred             CCeeEEEeCCCCCEEEEE--cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933          215 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v  290 (497)
                      .....+++.|.+..|..+  .. +.|...+++ +.....+       ....-.....+++++++ ..|+.+ +..+.|..
T Consensus       120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~-------~~~~~~~P~gla~d~~~-~~lY~~D~~~~~I~~  190 (316)
T 1ijq_A          120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS  190 (316)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred             CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEE-------EECCCCCceEEEEeccC-CEEEEEECCCCeEEE
Confidence            356789999866655544  33 788888887 3322222       11223457899999887 555555 45679999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~  362 (497)
                      +|+.....     +.+....          ........+++. .+.++.+-.. +.|..++..+ ++.+..+.
T Consensus       191 ~d~dg~~~-----~~~~~~~----------~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~-g~~~~~i~  246 (316)
T 1ijq_A          191 IDVNGGNR-----KTILEDE----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA  246 (316)
T ss_dssp             EETTSCSC-----EEEEECT----------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred             EecCCCce-----EEEeecC----------CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC-CcceEEEe
Confidence            99874321     2221100          001234567774 3434444333 8898888765 55555443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.37  E-value=0.028  Score=56.71  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             CCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CC-----
Q 010933          214 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----  285 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----  285 (497)
                      .....++++..++++++.|  .+..+.+||.. ...-...-     .+.. ...-.+++..+++ ++++.|+ .+     
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~-t~~W~~~~-----~~~~-~R~~~s~~~~~dg-~iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS-SDSWIPGP-----DMQV-ARGYQSSATMSDG-RVFTIGGSWSGGVFE  313 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTTCEEEEEGG-GTEEEECC-----CCSS-CCSSCEEEECTTS-CEEEECCCCCSSSCC
T ss_pred             CCccccccCCCCCCEEEeCCCCCCceEEecCc-CCceeECC-----CCCc-cccccceEEecCC-eEEEEeCcccCCccc
Confidence            3344467778899999987  56789999988 33322221     1111 1122345666788 8888888 34     


Q ss_pred             CeEEEEEccCCc
Q 010933          286 GFVRLVDMRQSA  297 (497)
Q Consensus       286 g~i~v~d~~~~~  297 (497)
                      ..+.+||..+.+
T Consensus       314 ~~~e~yd~~t~~  325 (656)
T 1k3i_A          314 KNGEVYSPSSKT  325 (656)
T ss_dssp             CCEEEEETTTTE
T ss_pred             ccceEeCCCCCc
Confidence            568999998754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.36  E-value=0.0021  Score=65.21  Aligned_cols=157  Identities=11%  Similarity=0.016  Sum_probs=87.2

Q ss_pred             eeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-C-CeEEEEE
Q 010933          217 INSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRLVD  292 (497)
Q Consensus       217 v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~v~d  292 (497)
                      ...+++.+.+..| ++- ..+.|.+++.. +.....+       +.........++++|.+ ..|+.+.. . +.|..++
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l-------~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~  525 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGG  525 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEE-------CCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCC
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEE-------EeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEe
Confidence            3457777544444 444 67889999987 3333322       11122345788999876 44444433 2 6777777


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccccc
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                      +.....     +.+..            ......+.|+|+|++..|+.++.  +.|..+++.  +.....+........ 
T Consensus       526 ~dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~-  585 (699)
T 1n7d_A          526 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA-  585 (699)
T ss_dssp             SSSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS-
T ss_pred             CCCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC-
Confidence            654221     11111            00134678999998777766643  789999986  332333221110000 


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                              ..   ..+++..+ .++++....+.|..++..+++.
T Consensus       586 --------~P---~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          586 --------HP---FSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             --------SC---CCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             --------Cc---eEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence                    00   25666544 4444555678999999877643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.36  E-value=0.099  Score=48.99  Aligned_cols=122  Identities=9%  Similarity=0.027  Sum_probs=69.8

Q ss_pred             CCeeEEEeCCCCCEEEEE--c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933          215 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v  290 (497)
                      .....+++.|.+..|...  . .+.|...+++ +.....+       ....-.....+++++++ ..|+.+ +..+.|..
T Consensus       202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~-------~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~  272 (400)
T 3p5b_L          202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS  272 (400)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred             CCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEE-------EECCCCceEEEEEEeCC-CEEEEEECCCCEEEE
Confidence            346789999866666554  2 4788888887 3332222       12223567899999887 556555 44688999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~  362 (497)
                      +|+......    ..... .          ........+++. .+.++.+-.. +.|..+|..+ ++.+..+.
T Consensus       273 ~d~dG~~~~----~~~~~-~----------~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~-G~~~~~i~  328 (400)
T 3p5b_L          273 IDVNGGNRK----TILED-E----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA  328 (400)
T ss_dssp             EETTSCCCE----EEEEC-S----------STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred             EeCCCCccE----EEEeC-C----------CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence            998654321    11111 0          001223466663 3333334333 8888888655 55555554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.36  E-value=0.088  Score=48.37  Aligned_cols=114  Identities=14%  Similarity=0.066  Sum_probs=62.7

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC---CCcEEEEEeCC-----C
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR-----G  286 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~d-----g  286 (497)
                      ...+.++|.|+|+++++-.++.|++++ . . ....+..++  ...........++++|+   +..+.++-...     +
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g-~~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-G-RLSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE-T-T-EEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE-C-C-CccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            356799999999966666669999998 3 2 222111111  12223456799999998   41444433332     6


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      .|..++...+.. ......+.......     -..|  ....++|.|||.+.++-
T Consensus       106 ~v~r~~~~~~~~-~~~~~l~~~~p~~~-----~~~h--~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          106 QVVRLRHLGERG-VLDRVVLDGIPARP-----HGLH--SGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEECSSCE-EEEEEEEEEECCCT-----TCCC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEEEeCCCCc-CceEEEEEeCCCCC-----CCCc--CCceEEECCCCCEEEEE
Confidence            788888764321 11111221100000     0112  24689999999766663

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.33  E-value=0.16  Score=52.02  Aligned_cols=119  Identities=9%  Similarity=0.027  Sum_probs=68.0

Q ss_pred             CCeeEEEeCCCCCEEEEE--cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEE
Q 010933          215 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v  290 (497)
                      .....|++.|.+..|+.+  .. +.|...++. +.....+       ....-.....|++++.+ ..|+.+. ..+.|..
T Consensus       514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~l-------v~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~  584 (791)
T 3m0c_C          514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS  584 (791)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred             CCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEE-------EeCCCCCceEEEEecCC-CeEEEEeCCCCcEEE
Confidence            357789999876566554  33 788888887 3333332       22223567899999877 5555554 4678999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeee
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVAT  360 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~  360 (497)
                      +++......    .+... .          .......+|++  .+..|+.++ . +.|...+..+ ++.+..
T Consensus       585 ~d~dG~~~~----~v~~~-~----------~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~t-G~~~~~  638 (791)
T 3m0c_C          585 IDVNGGNRK----TILED-E----------KRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLT-GSDVNL  638 (791)
T ss_dssp             EETTSCSCE----EEEEC-T----------TTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTT-CCCCEE
T ss_pred             EecCCCceE----EEecC-C----------CccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCC-CcceEE
Confidence            998654321    12111 0          00012345555  344565553 3 7888887654 443333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.31  E-value=0.0094  Score=53.34  Aligned_cols=76  Identities=11%  Similarity=0.091  Sum_probs=53.7

Q ss_pred             CeeEEEeCCCCCEEEEE-cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          216 NINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      ....++..++|+..+++ .. +.|...+.. +. ....+.+... ........+.|+++|+| ++|++....|.|..+|+
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~-~~~~~~~~~~-~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD-GK-TVSTFAWESG-NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTT-SC-CEEEEEECCC-CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEEC
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCC-CC-EEeeeeecCC-CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcC
Confidence            47889999999999987 66 887777766 33 3333322210 11223346799999999 88888877999999998


Q ss_pred             cC
Q 010933          294 RQ  295 (497)
Q Consensus       294 ~~  295 (497)
                      +.
T Consensus       214 ~~  215 (334)
T 2p9w_A          214 SK  215 (334)
T ss_dssp             SS
T ss_pred             CC
Confidence            84

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.26  E-value=0.19  Score=50.14  Aligned_cols=154  Identities=8%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             CeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEEE
Q 010933          216 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLV  291 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v~  291 (497)
                      ....+++.+.+..|..+  ..+.|.+.+++ +.....+       ....-.....++++|.. ..|+....  .+.|...
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~  151 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVL-------VWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRA  151 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEE-------ECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEE-------EeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEE
Confidence            45678888766666554  67899999987 3322222       11223456899999965 45555543  5678888


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeec-cccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHLR  368 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~-~~~~  368 (497)
                      ++......    .....              -...+.++++++++.|..++.  +.|..+|+.. .. ...+... ..+ 
T Consensus       152 ~~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~-~~v~~~~l~~P-  210 (628)
T 4a0p_A          152 AMDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LN-REVIADDLPHP-  210 (628)
T ss_dssp             ETTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEEECCSCE-
T ss_pred             eCCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cc-eEEeeccCCCc-
Confidence            77654321    11111              145789999998888877743  8899999863 22 2333221 111 


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                                     ..+++.. +...++-...+.|...|..+++..
T Consensus       211 ---------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          211 ---------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             ---------------EEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             ---------------eEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence                           3677764 344445555788999997776543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.24  E-value=0.097  Score=47.28  Aligned_cols=120  Identities=5%  Similarity=-0.003  Sum_probs=69.0

Q ss_pred             CCeeEEEeCCCCCEEEEE--c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933          215 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v  290 (497)
                      .....+++.|.+..|..+  . .+.|...+++ +.....+       ....-.....++++|++ ..|+.+ +..+.|..
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~l~~Pnglavd~~~-~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFII-------INSEIYWPNGLTLDYEE-QKLYWADAKLNFIHK  192 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEE-------EECCCCCccEEEEeccC-CEEEEEECCCCEEEE
Confidence            356788898865555554  2 5788888877 3322222       11223456899999976 555554 45789999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~  362 (497)
                      +|+......    .....             .......+++.. +.++.+-.. +.|..++..+ ++....+.
T Consensus       193 ~d~dG~~~~----~~~~~-------------~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~  246 (318)
T 3sov_A          193 SNLDGTNRQ----AVVKG-------------SLPHPFALTLFE-DILYWTDWSTHSILACNKYT-GEGLREIH  246 (318)
T ss_dssp             EETTSCSCE----EEECS-------------CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred             EcCCCCceE----EEecC-------------CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC-CCceEEEe
Confidence            998743211    11111             012345677653 333333323 8899999865 55554443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.24  E-value=0.089  Score=52.06  Aligned_cols=33  Identities=21%  Similarity=0.141  Sum_probs=25.4

Q ss_pred             eCCCEEEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933          333 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       333 ~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      ..+.+++.++ ++.++.||.++ ++.+.+++....
T Consensus       482 tagg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g  515 (599)
T 1w6s_A          482 TAGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG  515 (599)
T ss_dssp             ETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred             ecCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence            3566676675 59999999997 899988876544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.23  E-value=0.036  Score=53.04  Aligned_cols=117  Identities=16%  Similarity=0.098  Sum_probs=68.3

Q ss_pred             CeeEEEe-------CCCCCEEEEE--cCC------eEEEEeCccCceee-----EEeecCCCccCCCCCCeEEEEEeCCC
Q 010933          216 NINSISN-------NSDCETFVSA--DDL------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIY  275 (497)
Q Consensus       216 ~v~~~~~-------~~~~~~l~~~--~d~------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~  275 (497)
                      ....++|       +++|+.|+.+  .++      .|.+++....+...     ..+       ... .....++++|++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~~-~~p~giavdp~~  258 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AAY-KQCNGATIHPIN  258 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EEE-SCCCCEEECTTT
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------ccC-CCceEEEEcCCC
Confidence            5778999       9999966655  331      36666644212221     111       111 233577889955


Q ss_pred             CcEEEEEeCCCeEEEEEcc-------CCcccc----c----ccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          276 CNLLAYSSSRGFVRLVDMR-------QSALCD----H----SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       276 ~~~l~~~~~dg~i~v~d~~-------~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      ..++++-..++.|..+|+.       ++....    .    ....+..            +.......++|+|+|++|..
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~G~~lYv  326 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI------------ADPSWEFQIFIHPTGKYAYF  326 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC------------SSSSCCEEEEECTTSSEEEE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec------------CCCCCceEEEEcCCCCEEEE
Confidence            2666666678899999997       443200    0    0011111            01134578999999997666


Q ss_pred             Ee-c-CeEEEEecC
Q 010933          341 RD-Y-MNLKLWDIR  352 (497)
Q Consensus       341 ~~-~-~~i~lwd~~  352 (497)
                      ++ . ..|+.++..
T Consensus       327 aD~~~h~I~kid~d  340 (496)
T 3kya_A          327 GVINNHYFMRSDYD  340 (496)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EeCCCCEEEEEecC
Confidence            64 3 888887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.19  E-value=0.35  Score=51.86  Aligned_cols=37  Identities=5%  Similarity=0.114  Sum_probs=27.8

Q ss_pred             cceeEEEEEecCC----CCEEEEEeC-CccEEEeecCchhee
Q 010933          110 EKINRVRWCAAPN----GSMFILSTN-DKTIKLWKVRDQKVK  146 (497)
Q Consensus       110 ~~i~~l~~~~s~~----~~~l~s~s~-d~~i~iw~~~~~~~~  146 (497)
                      ..|.|+++.|.++    +.+++.|.. |++++|+++.+.+..
T Consensus       554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence            6699999864332    468888885 999999999864433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.18  E-value=0.13  Score=46.86  Aligned_cols=154  Identities=10%  Similarity=0.122  Sum_probs=86.9

Q ss_pred             CeeEEEeCC--CCC--EEEEE-c--CCeEEEEeCccCceeeEEeecCCCccCC-CCCCeEEEEEeCCCCcEEEEEeC---
Q 010933          216 NINSISNNS--DCE--TFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSS---  284 (497)
Q Consensus       216 ~v~~~~~~~--~~~--~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~---  284 (497)
                      ....+.+.+  +++  ++++- .  +.+|.+|+++..+.....+.    ++.+ .-.....+++.++| .+.++...   
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ft  187 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFI  187 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence            445555543  343  44443 3  67888888774433322211    1111 23457899999998 76666531   


Q ss_pred             --------------CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEE
Q 010933          285 --------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKL  348 (497)
Q Consensus       285 --------------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~l  348 (497)
                                    .|.|..+|.  ++..    .....              -...+.++|+||++.|+.++ . +.|..
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~--~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~  247 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSP--NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHV  247 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECT--TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             CcccccchhhccCCccEEEEEEC--CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEE
Confidence                          244444444  2211    11111              13468999999999888874 3 89999


Q ss_pred             EecCCCCcee--eeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCC-CcEEEEEcC
Q 010933          349 WDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSHG  410 (497)
Q Consensus       349 wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~d-g~i~vw~~~  410 (497)
                      |++..+++..  +.+.....+                -.+++.+ +|++.+++..+ +.|..|+.+
T Consensus       248 ~~~~~~g~l~~~~~~~~~g~P----------------DGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          248 YEKHANWTLTPLRVLSFDTLV----------------DNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEECTTSCEEEEEEEECSSEE----------------EEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             EEECCCCcEecCEEEeCCCCC----------------ceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            9997434321  122111111                3799999 59988877644 455555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.06  E-value=0.18  Score=46.23  Aligned_cols=27  Identities=33%  Similarity=0.584  Sum_probs=21.5

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd   60 (497)
                      ..-..++|.|+|+++++ ..+|.|++++
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence            45679999999985554 5679999998

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.99  E-value=0.0058  Score=62.03  Aligned_cols=121  Identities=7%  Similarity=0.002  Sum_probs=66.6

Q ss_pred             CeeEEEeCCCCCEEEEE--c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933          216 NINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  292 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d  292 (497)
                      ....+++.|.+..|+.+  . .+.|..+++. +.....+       ....-.....|+|+|++..++++-+..+.|..+|
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l-------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d  568 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  568 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEE-------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEE-------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEc
Confidence            34567888865555544  3 3678887776 2222211       1112234578999998635555555678999999


Q ss_pred             ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ec-CeEEEEecCCCCceeeeee
Q 010933          293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~-~~i~lwd~~~~~~~~~~~~  362 (497)
                      +.....     +.+....          ........|++..  ..|+.. .. +.|..++..+ ++.+..+.
T Consensus       569 ~dG~~~-----~~~~~~~----------~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~-G~~~~~i~  622 (699)
T 1n7d_A          569 VNGGNR-----KTILEDE----------KRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT-GSDVNLLA  622 (699)
T ss_dssp             SSSSCC-----EEECCCS----------SSCSSCCCCEEET--TEEEEECSTTTCEEEEETTT-EEEEECCC
T ss_pred             cCCCce-----EEEEecC----------CcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccC-CCceEEee
Confidence            864321     1111100          0012234555544  344444 33 8899998765 66665553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.88  E-value=0.14  Score=47.39  Aligned_cols=126  Identities=12%  Similarity=0.152  Sum_probs=78.9

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCccCce-----------eeEEeecCCCccCCCCCCeEEEEEeCCCC--cEEEEE
Q 010933          216 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS  282 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~  282 (497)
                      .|..+..+|+|++||...+..|.+-.+.....           ....+.+.+.+ .....+|..+.|+|-+.  ..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence            56779999999999998788899988762210           11223333211 11367899999999752  489999


Q ss_pred             eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c-CeEEEE
Q 010933          283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLW  349 (497)
Q Consensus       283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~lw  349 (497)
                      ..|+.|++||+......  .. .+.. ..   ..-.+......+.+++|.+++-.|...+  . |.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~--P~-~L~k-~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEK--PI-VLNK-PN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSC--CE-EESC-CC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCC--Cc-chhc-cc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999863211  11 2221 00   0001122335788999999876555533  4 777643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.86  E-value=0.27  Score=45.05  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=21.1

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd   60 (497)
                      .....|+|.|+|++++ +..+|.|++++
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d   55 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS   55 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence            4567999999998555 46669999887

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.84  E-value=0.45  Score=47.32  Aligned_cols=155  Identities=12%  Similarity=0.076  Sum_probs=92.1

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEE
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v  290 (497)
                      .....+++.+.+..|+.+  ..+.|.+.+.+ +.....+       ....-.....++++|.+ ..|+.+..  .+.|..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r  154 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIER  154 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEE-------EeCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence            357789999866666555  78899999988 4332222       11223446789999976 45555543  467777


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeee--ccc
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI--HEH  366 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~--~~~  366 (497)
                      .++......    .....             .-...+.+++++++..|..++.  +.|..+|+.  +.....+..  ...
T Consensus       155 ~~~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~  215 (619)
T 3s94_A          155 AGMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH  215 (619)
T ss_dssp             EETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC---------
T ss_pred             EECCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCC
Confidence            776543211    11111             0134688999998777777743  788888885  433333211  111


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      +                .++++..+ ....+-...+.|...|..+++.
T Consensus       216 P----------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          216 P----------------FALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             C----------------CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             c----------------eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            1                36777655 3444444578899999877754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.80  E-value=0.13  Score=45.86  Aligned_cols=137  Identities=7%  Similarity=-0.047  Sum_probs=73.4

Q ss_pred             EeCCCCCEEEEEc---CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCC
Q 010933          221 SNNSDCETFVSAD---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS  296 (497)
Q Consensus       221 ~~~~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~  296 (497)
                      .++++++.|+...   ++.-.||.+...+...+.       +..+..    ..+++++ ..|+..+. ...|.+.++..+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~-------lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-------IKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE-------EESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE-------EeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCC
Confidence            5677888887653   444444443322322222       112211    3467778 66666555 677888887665


Q ss_pred             cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec---CeEEEEecCCCCceeeeeeecccccccccc
Q 010933          297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  373 (497)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  373 (497)
                      ...    .+++.                .. ...++|++.+|+-...   ..|..-++.  +.....+....        
T Consensus       178 ~~~----~l~~~----------------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~--------  226 (302)
T 3s25_A          178 SEA----LFYDC----------------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN--------  226 (302)
T ss_dssp             EEE----EEECS----------------CE-EEEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC--------
T ss_pred             CEE----EEeCC----------------Cc-cceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC--------
Confidence            421    22222                11 2346699998887642   345555554  44444443211        


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeC--CCcEEEEEcCC
Q 010933          374 LYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGV  411 (497)
Q Consensus       374 ~~~~~~~~~~~~~~~s~~~~~l~s~~~--dg~i~vw~~~~  411 (497)
                                 ...|+|++++|+-++.  .+.|..-+++.
T Consensus       227 -----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          227 -----------IEHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             -----------EEEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             -----------cceEEECCCEEEEEECCCCcEEEEEECCC
Confidence                       2458888888876543  34555556543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.77  E-value=0.3  Score=44.16  Aligned_cols=130  Identities=9%  Similarity=0.135  Sum_probs=76.6

Q ss_pred             CeeEEEe--CCC-CC-EEEEE-cCCeEEEEeCccC------ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933          216 NINSISN--NSD-CE-TFVSA-DDLRINLWNLEIS------DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  284 (497)
Q Consensus       216 ~v~~~~~--~~~-~~-~l~~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  284 (497)
                      .+..+++  +|. ++ +++.. .+|.+..|++...      .+.+..+.        ....+..+..++.. ..|+.+-+
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--------lgsq~EgcvvDd~~-g~Lyv~eE  199 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--------MNSQTEGMAADDEY-GRLYIAEE  199 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--------CSSCEEEEEEETTT-TEEEEEET
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--------CCCCcceEEEcCCC-CeEEEecc
Confidence            4455666  664 44 34445 8899999988421      12233321        23467889999887 89999999


Q ss_pred             CCeEEEEEccCCccc-ccccceecccccccCCccccccccccccEEEEe--eCCC-EEEEEe--cCeEEEEecCCCCcee
Q 010933          285 RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFA--NDGQ-HLLSRD--YMNLKLWDIRMDSTPV  358 (497)
Q Consensus       285 dg~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~g~-~l~~~~--~~~i~lwd~~~~~~~~  358 (497)
                      +.-|..+|.+..... .+.+..+..           ......+..|++-  ++++ ||++++  ++...+||.+...+.+
T Consensus       200 d~GIw~~da~p~~~~~~~~v~~~~~-----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          200 DEAIWKFSAEPDGGSNGTVIDRADG-----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             TTEEEEEECSTTSCSCCEEEEEBSS-----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             cceEEEEeCCcCCCCCceEEEEecC-----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence            877777775522100 000111111           0011346777774  5555 666654  3899999997436777


Q ss_pred             eeeeecc
Q 010933          359 ATFKIHE  365 (497)
Q Consensus       359 ~~~~~~~  365 (497)
                      ..+....
T Consensus       269 g~f~Ig~  275 (355)
T 3amr_A          269 ADFRITD  275 (355)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            7775443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.73  E-value=0.44  Score=45.57  Aligned_cols=160  Identities=9%  Similarity=0.047  Sum_probs=90.8

Q ss_pred             CeeEEEeCC-CCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE-------eCCCCcEEEEEeCC
Q 010933          216 NINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-------HPIYCNLLAYSSSR  285 (497)
Q Consensus       216 ~v~~~~~~~-~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~l~~~~~d  285 (497)
                      ....|+|.| ++..|..+  ..+.|++.|.. .+....+...    -.........++|       ++++ ..|+++...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~-~~~v~~l~~~----~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK-NRMLSSPLNI----NTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETT-TTEEEEEECC----TTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECC-CCEEEEEEcc----CccccCCCcEEEEeecccccCCCC-CEEEEEeCC
Confidence            467899998 35555554  45788888888 4544444211    1112345799999       9999 756666554


Q ss_pred             C-------eEEEEEccC-Ccccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecC--
Q 010933          286 G-------FVRLVDMRQ-SALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR--  352 (497)
Q Consensus       286 g-------~i~v~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~--  352 (497)
                      +       .|.+++... +.... .....+..              -.....++++|++..|+.+.  .+.|..+|+.  
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--------------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~  279 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--------------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY  279 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--------------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeecc--------------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence            3       255665333 22210 00011111              12357889999655555543  3889999986  


Q ss_pred             -----CCCce-----------eeee-eecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcC
Q 010933          353 -----MDSTP-----------VATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHG  410 (497)
Q Consensus       353 -----~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~  410 (497)
                           + +..           ...+ ......           .   -+.++|+|+|++|+.+ ...++|+.++..
T Consensus       280 ~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~-----------~---p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          280 FKTIKN-GGSWDPIVKNNPNTFKQLFTIADPS-----------W---EFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHT-TCCCCCBGGGCTTTEEEEEECSSSS-----------C---CEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccC-ceeecccccccccccceeEecCCCC-----------C---ceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                 3 322           1121 111111           0   1589999999965544 557788887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.61  E-value=0.45  Score=44.19  Aligned_cols=169  Identities=5%  Similarity=0.008  Sum_probs=97.1

Q ss_pred             CCeeEEEeCCCCCEEEE-E---c----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC--CcEEEEEeC
Q 010933          215 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSS  284 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~  284 (497)
                      ..|..-..+++.++++. |   .    .|.+.+|..+  ++..+.       +++|.+....+....+.  ..++..+..
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEE-------ECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccch-------heeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            45666777888888764 2   2    4678899988  233333       67777665555443221  134555544


Q ss_pred             C---CeEEEEEccCCc-ccccc-cceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCcee
Q 010933          285 R---GFVRLVDMRQSA-LCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  358 (497)
Q Consensus       285 d---g~i~v~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~  358 (497)
                      .   ++++|.++.... -.... .+..+. ...++      .-.+--.+|..|+.-..+..-+. |.+.+||+.+ +.++
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fppe------~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i  293 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI  293 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCTT------STTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeee-eCCcc------cccCceeEEEecccCCEEEEEecCceEEEEeccc-ceee
Confidence            3   789998885420 00000 011111 00000      01123457788877666666555 9999999998 8888


Q ss_pred             eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      ..-+.....+            |   -.+-+....-++.....|.|.--.++....+
T Consensus       294 ~~nrIs~~~i------------F---~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          294 YMNRISGETI------------F---VTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEEECCSSCE------------E---EEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             eeecccCCce------------E---EecccCCCCcEEEEccCceEEEEEEccccch
Confidence            7777665543            2   2333344445666668888877777765443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.57  E-value=0.47  Score=43.95  Aligned_cols=82  Identities=7%  Similarity=-0.017  Sum_probs=56.3

Q ss_pred             cccEEEEeeCCCEEEEEecCeEEEEecCCCCcee-----------eeeeecccccccccccCCCCCccceeEEEEcCC--
Q 010933          325 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV-----------ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--  391 (497)
Q Consensus       325 ~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--  391 (497)
                      .+..+..+|+|++||..++..|.|-.+..+....           +.+......         ...-..|..+.|+|-  
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~---------~~~~s~I~qVlWHPl~~  137 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE---------VGPKSSIKKVLFHPKSY  137 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC-----------CCCCEEEEEECTTBG
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc---------cCCCCceeEEEeccccC
Confidence            5788999999999999988999999987321111           112211100         000112469999995  


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          392 -GLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       392 -~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                       +..|++-..|+.|++||+......
T Consensus       138 ~ds~LVVLtsD~~Ir~yDl~~s~~~  162 (452)
T 3pbp_A          138 RDSCIVVLKEDDTITMFDILNSQEK  162 (452)
T ss_dssp             GGCEEEEEETTSCEEEEETTCTTSC
T ss_pred             CCCeEEEEecCCEEEEEEcccCCCC
Confidence             568999999999999999975443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.51  E-value=0.41  Score=42.55  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=16.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCC
Q 010933          391 DGLHFATGSYS-----NLLRIFSHGVG  412 (497)
Q Consensus       391 ~~~~l~s~~~d-----g~i~vw~~~~~  412 (497)
                      ++++++.|+.+     ..+.+||.++.
T Consensus       253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          253 RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            67777777765     35788888765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.48  E-value=0.8  Score=45.54  Aligned_cols=205  Identities=9%  Similarity=-0.037  Sum_probs=102.3

Q ss_pred             CCcceEEEEEcCCCCEEEEee-cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           31 DVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        31 h~~~I~~i~~sp~g~~lasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .......++|++.+..|.... ..+.|..++.++...                      ....+..--            
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~~v~~~~~------------   83 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----------------------VQNVVVSGL------------   83 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------CEEEECSSC------------
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----------------------eEEEEeCCC------------
Confidence            345678999999776666555 457888888765311                      011111111            


Q ss_pred             cceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      .....|++  ++.++.|+.+ ...+.|.+.++++.....+....... ...+...+..+.+..+            ....
T Consensus        84 ~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~Iavdp~~g~ly~t------------D~g~  148 (619)
T 3s94_A           84 LSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ-PRAIALDPSSGFMYWT------------DWGE  148 (619)
T ss_dssp             SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC-CCCEEEETTTTEEEEE------------ECSS
T ss_pred             CCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCC-CceEEEecCCCeEEEe------------ccCC
Confidence            34678888  5545555544 57789999998765433322111110 0111111111111111            1111


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                      .+.|...+++..    ....+....-...+.+++.+++..|..+  ..+.|..+|++ +.....+       ..+.....
T Consensus       149 ~~~I~r~~~dG~----~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~-------~~~~~~~P  216 (619)
T 3s94_A          149 VPKIERAGMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAV-------VKGSLPHP  216 (619)
T ss_dssp             SCEEEEEETTSC----SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC----------------C
T ss_pred             CCEEEEEECCCC----ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEE-------EeCCCCCc
Confidence            122222233221    1111212334467889999977777766  67889888887 3333222       11111223


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcc
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  298 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  298 (497)
                      ..+++..+  .++.+-...+.|...|..+++.
T Consensus       217 ~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          217 FALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             CCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             eEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            46666654  4444445578899999877653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.39  E-value=0.11  Score=47.80  Aligned_cols=114  Identities=13%  Similarity=0.038  Sum_probs=62.5

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC---CCcEEEEEeC---C--
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R--  285 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~---d--  285 (497)
                      -.....++|.|+|+++++-.++.|++++..  +. ..+..++  ...........++++|+   +..+.++-+.   +  
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~--G~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS--GK-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECSS--CE-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC--Cc-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            345789999999986666666999999743  33 2121111  11222456789999997   4144443332   3  


Q ss_pred             --CeEEEEEccCCcc-cccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          286 --GFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       286 --g~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                        ..|..|+...... ......++..-..       -..|  ....++|.|||.++++-
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~-------~~~h--~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPG-------AYIH--NGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEEC-------CSSC--CCCCEEECTTSCEEEEC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCC-------CCCc--CCceEEECCCCcEEEEE
Confidence              5677777664310 1000011111000       0112  34679999999877763

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.97  E-value=0.51  Score=44.89  Aligned_cols=116  Identities=12%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC--CCCCCeEEEEEeCC---CCcEEEEEeC----
Q 010933          215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPI---YCNLLAYSSS----  284 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~---~~~~l~~~~~----  284 (497)
                      ...+.|+|.|+|+++++- ..+.|++++.. .+....+..+.. .+.  ........|+|+|+   + ..|+++..    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~~  103 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKNP  103 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEECT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCc-cccccCCCCceeEEEECCCcCcC-CEEEEEEecccc
Confidence            456799999999988887 44579888765 233222222211 111  13567789999995   3 34444332    


Q ss_pred             ---------CCeEEEEEccCCcc-cccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          285 ---------RGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       285 ---------dg~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                               ...|.-+++..+.. +.....++.....       -..  .....|+|.|||.+.++..
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-------~~~--H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-------SKD--HQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-------CSS--CCEEEEEECTTSCEEEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-------CCC--CCCCeEeECCCCeEEEEEC
Confidence                     23555565543211 1111112221000       011  2468899999998777643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.97  E-value=1.5  Score=43.72  Aligned_cols=200  Identities=13%  Similarity=-0.023  Sum_probs=104.7

Q ss_pred             CcceEEEEEcCCCCEEEEe-ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      -..+..++|++.+..|... ..++.|..+++++...                     +  ..+..-.            .
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~---------------------~--~v~~~g~------------~   80 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---------------------E--HVVEFGL------------D   80 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------------E--EEECSSC------------S
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc---------------------E--EEEeCCC------------C
Confidence            3467899999976666544 4678888888765422                     1  1111111            2


Q ss_pred             ceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          111 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ....|++  +..+..|+ +-...+.|.+.++++.....+....... ...+...+..|.+..+            .....
T Consensus        81 ~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~iavdp~~G~lY~t------------D~g~~  145 (628)
T 4a0p_A           81 YPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS-PRALALDPAEGFMYWT------------EWGGK  145 (628)
T ss_dssp             CCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCC-EEEEEEETTTTEEEEE------------ECSSS
T ss_pred             CcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCC-cccEEEccCCCeEEEe------------CCCCC
Confidence            3566777  44444444 4456788898888765433322111110 1111111111211111            11112


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                      +.|...+++...    ...+ ...-.....+++.++++.|..+  ..+.|..+|+.....  +++       ........
T Consensus       146 ~~I~r~~~dG~~----~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~-------~~~l~~P~  211 (628)
T 4a0p_A          146 PKIDRAAMDGSE----RTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI-------ADDLPHPF  211 (628)
T ss_dssp             CEEEEEETTSCS----CEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-------EECCSCEE
T ss_pred             CEEEEEeCCCCc----eEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-------eccCCCce
Confidence            233333333221    1222 1234467889999987777776  678999999873222  332       11223446


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  297 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  297 (497)
                      .+++.. + .++++-...+.|...|..+++
T Consensus       212 glav~~-~-~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          212 GLTQYQ-D-YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence            777765 3 555555557888888866553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.85  E-value=1.1  Score=41.07  Aligned_cols=30  Identities=7%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  141 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~  141 (497)
                      .....|+|  .|+++.|+.+...|.|++++..
T Consensus        18 ~~P~~i~~--~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAF--LPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEE--CSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEE--cCCCCEEEEEeCCceEEEEeCC
Confidence            44678999  6888745566677888888743

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.84  E-value=1.1  Score=41.06  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=22.5

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEec
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV   62 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~   62 (497)
                      .....|+|.|+|++|.++...|.|++++.+
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            355799999999934445667999999853

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.71  E-value=0.8  Score=49.30  Aligned_cols=155  Identities=8%  Similarity=0.125  Sum_probs=82.1

Q ss_pred             cceEEEeecCCccceeeeeeccCC----CCCeeEEEeCCCCCEEEE-E-------cCCeEEEEeCccCceeeEEeecCCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPS  257 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~~~~~  257 (497)
                      ..+.-|++..  ...|++.| ..|    ...|..-..+++.++++. |       -.|.+.+|..+ . +..+.      
T Consensus       125 ~aVyHW~~~~--~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r-~~sQ~------  193 (1630)
T 1xi4_A          125 NAVYHWSMEG--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-R-KVSQP------  193 (1630)
T ss_pred             CeEEEeccCC--CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-c-ccchh------
Confidence            3455555543  22344443 333    345666777888888764 2       24788899887 2 22222      


Q ss_pred             ccCCCCCCeEEEEEe--CCCCcEEEEEeC---CCeEEEEEccCC---c--ccccccceecccccccCCcccccccccccc
Q 010933          258 NMDDLTEVITSAEFH--PIYCNLLAYSSS---RGFVRLVDMRQS---A--LCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       258 ~~~~~~~~i~~~~~~--~~~~~~l~~~~~---dg~i~v~d~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                       ++||.+....+...  +..+.++..+..   .+.++|-++...   .  ...+...++-.    ++      .-.+-..
T Consensus       194 -iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~----~~------~~~Dfpv  262 (1630)
T 1xi4_A          194 -IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP----PE------AQNDFPV  262 (1630)
T ss_pred             -hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC----cc------cccCcce
Confidence             56676655444443  111133333332   368888888542   1  00000011100    00      0012235


Q ss_pred             EEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccc
Q 010933          328 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                      +|..++.-..+..-+ .|-+.+||+.+ +.++..-+.....
T Consensus       263 ~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~~ris~~~  302 (1630)
T 1xi4_A          263 AMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGET  302 (1630)
T ss_pred             EEEeccccCEEEEEecCceEEEEeccc-chhhhhccccCCc
Confidence            667777655555554 49999999998 8877666555543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.69  E-value=0.23  Score=41.45  Aligned_cols=113  Identities=10%  Similarity=-0.147  Sum_probs=63.5

Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  344 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~  344 (497)
                      .+..++|+|+| .+.++  .+|.++-.+..+...     ..+-.....-.    -.+ -....++.|.|+|.+.++ +||
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~IG----~~G-w~~F~a~~fD~~G~LYav-~dG  107 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKKIG----NGG-WNQFQFLFFDPNGYLYAV-SKD  107 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHCEEEE----CSC-GGGCSEEEECTTSCEEEE-ETT
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccccEec----ccc-cccceEEEECCCCCEEEe-CCC
Confidence            56799999998 66555  778777777654221     11111000000    000 012588999999988888 779


Q ss_pred             eEEEEecCCCCceee----eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          345 NLKLWDIRMDSTPVA----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                      .|+-++-.+.+.--.    ..-+.....             ++..+.|.|+|.+.+..  |+.++-
T Consensus       108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~-------------~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          108 KLYKASPPQSDTDNWIARATEVGSGGWS-------------GFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEECSSGG-------------GEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             EEEEeCCCcCCCCceeccccEeccCCCC-------------ceEEEEECCCceEEEEe--CCcEEe
Confidence            888777533222111    010111110             12579999999877766  777543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.63  E-value=1.1  Score=39.79  Aligned_cols=135  Identities=13%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             CCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC--------------C
Q 010933          224 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------G  286 (497)
Q Consensus       224 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------g  286 (497)
                      .++..|..+   .++.|+..+.+ +....++.        .  .  .+--+++++ ..|+.+...              .
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~--------~--~--~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~   88 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLS--------N--D--TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRN   88 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETT-SCSCEEEE--------E--E--EEEEEEECS-SEEEEEEECC------CCSSCCSE
T ss_pred             EeCCEEEEEeCCCCceEEEEcCC-CCCCEEcc--------C--C--ceeeEEEcC-CEEEEEECCCCcccccceeccCCC
Confidence            456666664   36666666665 33333321        1  1  233467888 777766543              3


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---cCeEEEEecCCCCceeeeeee
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~~~i~lwd~~~~~~~~~~~~~  363 (497)
                      .|+..++..++.     ..+..                 -.+..|++++++|+-..   ++.-.||.+..++...+.+..
T Consensus        89 ~Iy~i~~dg~~~-----~~l~~-----------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~  146 (302)
T 3s25_A           89 SLCRIKRNGHGS-----TVLDP-----------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN  146 (302)
T ss_dssp             EEEEEETTSCCC-----EEEEC-----------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES
T ss_pred             eEEEEeCCCCcc-----eEeec-----------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC
Confidence            567777765532     11211                 13347888999988765   444455544444555555544


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCC
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS  413 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~  413 (497)
                      +..                   ..|+++++.|+-.+. ...|++-++..+.
T Consensus       147 ~~~-------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          147 HYL-------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQS  178 (302)
T ss_dssp             SCC-------------------CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred             CCc-------------------eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence            322                   335677888876655 6778888876653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.58  E-value=0.32  Score=40.56  Aligned_cols=113  Identities=12%  Similarity=-0.050  Sum_probs=64.4

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce-----eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  289 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  289 (497)
                      ..+..++|+|+|.+.+. .+|.++-.+..+...     ....+-     -.+-.. ..++.|+|+| .+.++  .||.|+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG-----~~Gw~~-F~a~~fD~~G-~LYav--~dG~iy  110 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIG-----NGGWNQ-FQFLFFDPNG-YLYAV--SKDKLY  110 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEE-----CSCGGG-CSEEEECTTS-CEEEE--ETTEEE
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEec-----cccccc-ceEEEECCCC-CEEEe--CCCEEE
Confidence            36779999999986666 788776666542110     000000     001111 4788999999 66665  669998


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEE
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL  348 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~l  348 (497)
                      -++-.+...     ..+......     .-..-=..+..+.+.|+|.+.++. ++.++-
T Consensus       111 r~~pP~~~~-----~~Wl~~a~~-----vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr  158 (236)
T 1tl2_A          111 KASPPQSDT-----DNWIARATE-----VGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK  158 (236)
T ss_dssp             EESCCCSTT-----CCHHHHSEE-----EECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred             EeCCCcCCC-----CceeccccE-----eccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence            887643211     111110000     000001357899999999988888 877543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.57  E-value=1.2  Score=39.57  Aligned_cols=22  Identities=14%  Similarity=0.373  Sum_probs=16.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEEcCCC
Q 010933          391 DGLHFATGSYSN-----LLRIFSHGVG  412 (497)
Q Consensus       391 ~~~~l~s~~~dg-----~i~vw~~~~~  412 (497)
                      ++++++.|+.++     .+.+||..+.
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCC
Confidence            677777887654     4888888765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.36  E-value=1.6  Score=39.66  Aligned_cols=115  Identities=11%  Similarity=0.048  Sum_probs=65.2

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC----CCcEEEEEe--CCC
Q 010933          214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSS--SRG  286 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~--~dg  286 (497)
                      -...+.|+|.|+|+++++- ..|.|++++.. .+....+..+ +............++++|+    + .+.++-+  .++
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~~~  107 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGEV-PGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSASDN  107 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEEC-TTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSSSE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeeccc-CceeecCCCCceeeEeccccccCC-EEEEEEecCCCC
Confidence            4567899999999988888 59999999865 3332222111 1112334567899999995    4 3333322  345


Q ss_pred             eEEEEEccCCc----ccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          287 FVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       287 ~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      .|.-|.+..+.    .......++..-..       -..|  ....|.|.|||.+.++
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-------~~~H--~g~~l~fgpDG~Lyvt  156 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPK-------GVIH--NGGRIAFGPDKMLYAG  156 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECC-------CSSC--CCCCEEECTTSCEEEE
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCC-------CCCc--cCccccCCCCCCEEEE
Confidence            66666665421    11111122221000       0112  3567999999987776

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.26  E-value=1.5  Score=38.92  Aligned_cols=23  Identities=0%  Similarity=0.189  Sum_probs=17.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCC
Q 010933          391 DGLHFATGSYS-----NLLRIFSHGVGS  413 (497)
Q Consensus       391 ~~~~l~s~~~d-----g~i~vw~~~~~~  413 (497)
                      ++++++.|+.+     ..+.+||..+.+
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            67788888854     468888887753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.25  E-value=1.9  Score=40.07  Aligned_cols=130  Identities=11%  Similarity=0.121  Sum_probs=90.7

Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  347 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~  347 (497)
                      +.-.+|.. +.+|.-. ...+.++|+++...+    +.+..              ...|.-=.|-.+ +.|+--++..|+
T Consensus        70 sAIMnP~~-~iiALra-g~~lQiFnle~K~kl----ks~~~--------------~e~VvfWkWis~-~~l~lVT~taVy  128 (494)
T 1bpo_A           70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM--------------TDDVTFWKWISL-NTVALVTDNAVY  128 (494)
T ss_dssp             EEEECSSS-SCEEEEE-TTEEEEEETTTTEEE----EEEEC--------------SSCCCEEEEEET-TEEEEECSSEEE
T ss_pred             eeeeCCCC-cEEEEec-CCeEEEEchHHhhhh----cceec--------------CCCceEEEecCC-CeEEEEcCCeeE
Confidence            45678887 7666655 789999999987544    33332              134666667643 466666779999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEe
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      -|++..+..+.+.+..|....           ...|.....+++.++++..|       -.|.+.+|.++.+  ..+.++
T Consensus       129 HWsi~~~s~P~kvFdR~~~L~-----------~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ie  195 (494)
T 1bpo_A          129 HWSMEGESQPVKMFDRHSSLA-----------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIE  195 (494)
T ss_dssp             EEESSSSCCCEEEEECCGGGT-----------TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEEC
T ss_pred             EecccCCCCchhheecchhcc-----------cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchhe
Confidence            999976567888888877652           12235788899999887444       2578999999854  568889


Q ss_pred             ccCcceeeeEe
Q 010933          421 AGKNENRKPIL  431 (497)
Q Consensus       421 ~~~~~v~~~~~  431 (497)
                      +|...-..+.+
T Consensus       196 Ghaa~F~~~~~  206 (494)
T 1bpo_A          196 GHAASFAQFKM  206 (494)
T ss_dssp             CSEEEEEEEEC
T ss_pred             eeeeeeEEEec
Confidence            98765544443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.75  E-value=2.9  Score=39.64  Aligned_cols=32  Identities=9%  Similarity=0.197  Sum_probs=23.3

Q ss_pred             cceEEEEEcCCCCEEEEeecCCeEEEEEecCC
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~   64 (497)
                      .....|+|.|+|+++++-...+.|++++..++
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            45679999999997776544457888876544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.29  E-value=4.1  Score=36.02  Aligned_cols=23  Identities=13%  Similarity=0.166  Sum_probs=16.3

Q ss_pred             CCCEEEEeecC----CeEEEEEecCCc
Q 010933           43 TGDYLAVGDRG----GRVILFETVGGK   65 (497)
Q Consensus        43 ~g~~lasg~~d----g~i~iwd~~~~~   65 (497)
                      ++.+++.|+.+    ..+.+||..+.+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence            56777888754    578888877653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.27  E-value=4.2  Score=36.06  Aligned_cols=22  Identities=14%  Similarity=0.428  Sum_probs=15.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCC
Q 010933          391 DGLHFATGSYS-----NLLRIFSHGVG  412 (497)
Q Consensus       391 ~~~~l~s~~~d-----g~i~vw~~~~~  412 (497)
                      ++++++.|+.+     ..+.+||..+.
T Consensus       262 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          262 QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            67777777754     35778888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.44  E-value=6.1  Score=35.82  Aligned_cols=28  Identities=4%  Similarity=-0.073  Sum_probs=17.7

Q ss_pred             EcCCCCEEEEEeCCC------cEEEEEcCCCCcc
Q 010933          388 VSGDGLHFATGSYSN------LLRIFSHGVGSAG  415 (497)
Q Consensus       388 ~s~~~~~l~s~~~dg------~i~vw~~~~~~~~  415 (497)
                      ...++++++.|+.++      .+.++++++++..
T Consensus       313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            334778888888653      3666688877554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.38  E-value=6.2  Score=35.73  Aligned_cols=33  Identities=12%  Similarity=0.124  Sum_probs=25.6

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCC
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~   64 (497)
                      -..-..|+|.|||.++++-...|.|++++..++
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence            346689999999997776655899999876554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.87  E-value=3.8  Score=44.41  Aligned_cols=130  Identities=11%  Similarity=0.120  Sum_probs=84.9

Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  347 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~  347 (497)
                      +...+|.. +.+|.-. ...+.|+|+.+...+    +.+..              ...|.-=.|-. .+.|+--++..|+
T Consensus        70 sAIMnP~~-~iiALra-g~~lQiFnl~~k~kl----ks~~~--------------~e~VvfWkWis-~~~l~lVT~~aVy  128 (1630)
T 1xi4_A           70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM--------------TDDVTFWKWIS-LNTVALVTDNAVY  128 (1630)
T ss_pred             hhccCCCc-ceEEEec-CCeEEEeehHHhhhh----ccccc--------------CCCceEEEecC-CCeeEEEcCCeEE
Confidence            44567876 6666554 789999999886544    32222              13455556653 3456555678999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEe
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      -|++..+..+.+.+..|....           ...|..-..+++.++++..|       -.|.+.+|+++.+  +.+.++
T Consensus       129 HW~~~~~s~P~k~fdR~~~L~-----------~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~ie  195 (1630)
T 1xi4_A          129 HWSMEGESQPVKMFDRHSSLA-----------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIE  195 (1630)
T ss_pred             EeccCCCCccHHHHhcchhcc-----------cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhh
Confidence            999975567777777665542           12235778888988877444       3588999998854  457788


Q ss_pred             ccCcceeeeEe
Q 010933          421 AGKNENRKPIL  431 (497)
Q Consensus       421 ~~~~~v~~~~~  431 (497)
                      ||...-.....
T Consensus       196 gha~~F~~~~~  206 (1630)
T 1xi4_A          196 GHAASFAQFKM  206 (1630)
T ss_pred             HhHhhhheecc
Confidence            88665544333

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.68  E-value=6.8  Score=34.75  Aligned_cols=23  Identities=4%  Similarity=-0.005  Sum_probs=15.7

Q ss_pred             CCCcEEEEEeC-C-----CeEEEEEccCCc
Q 010933          274 IYCNLLAYSSS-R-----GFVRLVDMRQSA  297 (497)
Q Consensus       274 ~~~~~l~~~~~-d-----g~i~v~d~~~~~  297 (497)
                      ++ .+++.|+. +     ..+.+||..+.+
T Consensus       148 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          148 MD-LVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            44 67777776 2     468889987653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.46  E-value=6.9  Score=34.37  Aligned_cols=64  Identities=8%  Similarity=0.082  Sum_probs=33.7

Q ss_pred             CCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEc
Q 010933          225 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  293 (497)
Q Consensus       225 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~  293 (497)
                      ++++++.| .+     ..+.+||.. ...-..+-.     +...... .+++.. ++ .+++.|+.+     ..+.+||+
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~-~~~W~~~~~-----~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPH-TGHWTNVTP-----MATKRSG-AGVALL-ND-HIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETT-TTEEEEECC-----CSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEECCCCCCcccceEEEEeCC-CCcEEeCCC-----CCccccc-ceEEEE-CC-EEEEEeCCCCCcccceEEEEeC
Confidence            56666665 43     468888887 333222211     1111111 122222 45 777777764     46889998


Q ss_pred             cCCc
Q 010933          294 RQSA  297 (497)
Q Consensus       294 ~~~~  297 (497)
                      .+.+
T Consensus       230 ~~~~  233 (301)
T 2vpj_A          230 RTDS  233 (301)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8753

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.26  E-value=5.8  Score=35.76  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=18.2

Q ss_pred             CEEEEeecCCeEEEEEecCCcc
Q 010933           45 DYLAVGDRGGRVILFETVGGKN   66 (497)
Q Consensus        45 ~~lasg~~dg~i~iwd~~~~~~   66 (497)
                      .+++.++.||.|.-+|.++|+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~   32 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI   32 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcE
Confidence            4678888999999999888865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.71  E-value=10  Score=33.46  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=33.4

Q ss_pred             CCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEc
Q 010933          225 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  293 (497)
Q Consensus       225 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~  293 (497)
                      ++++++.| .+     ..+.+||.. ...-... .    .+.........+.+  ++ .+++.|+.+     ..+.+||+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~-~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPE-RNEWRMI-T----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETT-TTEEEEC-C----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCC-CCeEeeC-C----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence            45566665 33     468888887 3322221 1    11111111122222  45 777777664     56889998


Q ss_pred             cCCc
Q 010933          294 RQSA  297 (497)
Q Consensus       294 ~~~~  297 (497)
                      .+.+
T Consensus       239 ~~~~  242 (308)
T 1zgk_A          239 ETET  242 (308)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.35  E-value=7.3  Score=34.24  Aligned_cols=64  Identities=9%  Similarity=0.083  Sum_probs=33.6

Q ss_pred             CCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC-----eEEEEEc
Q 010933          225 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDM  293 (497)
Q Consensus       225 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~v~d~  293 (497)
                      ++++++.| .+     ..+.+||.. ...-..+-.     +...... .+++.. ++ .+++.|+.++     .+.+||+
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~-----~~~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPT-TNAWRQVAD-----MNMCRRN-AGVCAV-NG-LLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETT-TTEEEEECC-----CSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEECCCCCCcccceEEEEeCC-CCCEeeCCC-----CCCcccc-CeEEEE-CC-EEEEECCcCCCcccccEEEEcC
Confidence            45666665 43     468889987 333222211     1111111 122222 45 7777777653     4888998


Q ss_pred             cCCc
Q 010933          294 RQSA  297 (497)
Q Consensus       294 ~~~~  297 (497)
                      .+.+
T Consensus       275 ~~~~  278 (302)
T 2xn4_A          275 TTDK  278 (302)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            7653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.22  E-value=21  Score=36.36  Aligned_cols=172  Identities=10%  Similarity=-0.039  Sum_probs=88.8

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCc-eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      ..|.++.-..+|.+.+...+| +..++..... .....+........-....|.++.-+++| . |-.|+ ++-|..||.
T Consensus       324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt-~~GL~~~~~  399 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-Q-LWIAT-DGSINRYDY  399 (758)
T ss_dssp             CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-C-EEEEE-TTEEEEEET
T ss_pred             ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-C-EEEEe-CCcHhhcCc
Confidence            457888878888776655544 6666654211 11111110000001123568888888887 5 44455 457899998


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCC----CCcee---eeeeeccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM----DSTPV---ATFKIHEH  366 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~----~~~~~---~~~~~~~~  366 (497)
                      .+++..     .+.. ......     .....|.++...++|++.+....+-+.++|...    .....   ..+.....
T Consensus       400 ~~~~~~-----~~~~-~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (758)
T 3ott_A          400 ATRQFI-----HYNI-VDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG  468 (758)
T ss_dssp             TTTEEE-----EEEE-ECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGT
T ss_pred             CCCcEE-----Eeec-CCCcCC-----CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccc
Confidence            776432     1110 000000     012357777777777655543346788888642    01111   11111111


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                      .        ...   .+.++...++|.+.+.++..+-|..+|..++
T Consensus       469 l--------~~~---~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~  503 (758)
T 3ott_A          469 L--------SGM---FINQIIPDNEGNVWVLLYNNKGIDKINPRTR  503 (758)
T ss_dssp             C--------SCS---CEEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred             c--------ccc---eeeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence            0        001   1357888888887764454556888898765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.97  E-value=16  Score=34.65  Aligned_cols=60  Identities=13%  Similarity=0.034  Sum_probs=35.8

Q ss_pred             CCeeEEEeCCCCC--EEEEEcCCeEEEEeCccCceeeEEeecCCCccC----CCCCCeEEEEEeCC
Q 010933          215 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI  274 (497)
Q Consensus       215 ~~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~  274 (497)
                      ...+.|+|.|+|.  ++++-..|.|++++.........+.+++.....    ..+.....|+++|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3567899999996  555558899999975411111111122211111    12567889999996

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.91  E-value=18  Score=31.99  Aligned_cols=23  Identities=4%  Similarity=-0.024  Sum_probs=15.3

Q ss_pred             CCCcEEEEEeC------CCeEEEEEccCCc
Q 010933          274 IYCNLLAYSSS------RGFVRLVDMRQSA  297 (497)
Q Consensus       274 ~~~~~l~~~~~------dg~i~v~d~~~~~  297 (497)
                      ++ .+++.|+.      -..+.+||+.+.+
T Consensus       158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            45 67777764      2358899988753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=82.50  E-value=24  Score=30.72  Aligned_cols=215  Identities=7%  Similarity=-0.045  Sum_probs=104.5

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      .|..++.......++  .||.|+.|-....++.-.        .......|..++....  ..++. . ||.|..|-...
T Consensus        25 ~i~~ia~G~~h~~~l--~~G~v~~wG~n~~Gqlg~--------p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~   90 (282)
T 3qhy_B           25 GVDAIAGGYFHGLAL--KGGKVLGWGANLNGQLTM--------PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNE   90 (282)
T ss_dssp             SCCEEEECSSEEEEE--ETTEEEEEECCSSSTTSC--------CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCT
T ss_pred             CCcEEEeCCCeEEEE--ECCEEEEEeCCCCCCCCC--------CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCC
Confidence            466666544332222  388999997664443221        0112346777777655  34444 5 99999998765


Q ss_pred             CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933          296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  375 (497)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (497)
                      ...+......                 ...|..++...+. .++.. +|.|+.|-....+++-.......          
T Consensus        91 ~Gqlg~P~~~-----------------~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~~----------  141 (282)
T 3qhy_B           91 DGQTTVPAEA-----------------RSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQS----------  141 (282)
T ss_dssp             TSTTCCCGGG-----------------SSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGGS----------
T ss_pred             CCCCCCCccc-----------------CCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCCC----------
Confidence            3322111010                 1246666655433 33334 89999997654333211111001          


Q ss_pred             CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-e
Q 010933          376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H  454 (497)
Q Consensus       376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~  454 (497)
                         .   +..++...  .+.+.-. ||.|+.|-......+..... -...+..++...  .      ..++.  .++. .
T Consensus       142 ---~---i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~p~~-~~~~v~~i~~G~--~------hs~al--~~G~v~  201 (282)
T 3qhy_B          142 ---G---VTALDGGV--YTALAVK-NGGVIAWGDNYFGQTTVPAE-AQSGVDDVAGGI--F------HSLAL--KDGKVI  201 (282)
T ss_dssp             ---S---EEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGG-GGSSEEEEEECS--S------EEEEE--ETTEEE
T ss_pred             ---C---eEEEEccc--CEEEEEE-CCEEEEecCCCCCCCCCcee-cCCCeEEEEecC--C------EEEEE--ECCeEE
Confidence               1   13444433  2333334 78899997665433311111 123344444332  1      12344  4666 7


Q ss_pred             ecC--CCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933          455 ENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  495 (497)
Q Consensus       455 iw~--~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~  495 (497)
                      .|.  ..............|..++-..... +|.. ++.+|.|
T Consensus       202 ~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~-~g~v~~w  242 (282)
T 3qhy_B          202 AWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK-NGKVIAW  242 (282)
T ss_dssp             EEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE-TTEEEEE
T ss_pred             EEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE-CCEEEEe
Confidence            772  2212222222234677777554433 4444 7778877

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.21  E-value=48  Score=33.32  Aligned_cols=155  Identities=10%  Similarity=0.037  Sum_probs=75.7

Q ss_pred             CCCEEEEE-cC------CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC--eEEEEEccC
Q 010933          225 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ  295 (497)
Q Consensus       225 ~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~v~d~~~  295 (497)
                      +++.++.| .+      ..+.+||.. ... ...+.    .+...... .+++...++ .+++.|+.++  .+.+||..+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~-t~~-W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMK-TRE-WSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETT-TTE-EEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCC-CCc-EEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence            66666665 32      357788877 332 22210    11111111 223332366 7888887754  689999887


Q ss_pred             CcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEec--------CeEEEEecCCCCce-----eeee
Q 010933          296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY--------MNLKLWDIRMDSTP-----VATF  361 (497)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~--------~~i~lwd~~~~~~~-----~~~~  361 (497)
                      ..-.    . .......+       .......++.+..+ +++++.|+.        +.+.+||+.+ ...     -..+
T Consensus       523 ~~W~----~-~~~~g~~p-------~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~  589 (695)
T 2zwa_A          523 EIFK----D-VTPKDEFF-------QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKK  589 (695)
T ss_dssp             TEEE----E-CCCSSGGG-------GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEE
T ss_pred             CceE----E-ccCCCCCC-------CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEc
Confidence            5321    0 00000000       01122344555655 556666531        4688999986 331     1111


Q ss_pred             eec-ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCC
Q 010933          362 KIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGS  413 (497)
Q Consensus       362 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--------g~i~vw~~~~~~  413 (497)
                      ... ....          ..   .++....++++++.||.+        ..+.+||..+..
T Consensus       590 ~~~p~~~R----------~~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          590 LQHPLFQR----------YG---SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EECGGGCC----------BS---CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             CCCCCCCc----------cc---ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            111 0100          00   134444447777777743        458899988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	497
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 37/310 (11%), Positives = 98/310 (31%), Gaps = 25/310 (8%)

Query: 99  EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 158
           + +  KSL+    +  V++  + +G  ++ +  +KT ++++V D  +      D      
Sbjct: 52  DVELHKSLDHTSVVCCVKF--SNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 159 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN 218
            EN   +        +P S  +   + ++ +   K    G            +     I 
Sbjct: 109 PENLNTS-------SSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 219 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 278
                            ++   + + + + +++   + S    + + +T+    P     
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 279 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 338
           +A  S    VR+ D     L +                   T    S+  + F  DGQ +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 339 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 398
           +S             ++   +  K       ++  + + D +      + + +  +  +G
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS---VATTQNDEYILSG 326

Query: 399 SYSNLLRIFS 408
           S    +  + 
Sbjct: 327 SKDRGVLFWD 336

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 49/379 (12%), Positives = 112/379 (29%), Gaps = 58/379 (15%)

Query: 33  DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT 91
            +V  ++F   G+YLA G ++  +V           +S        D  +   PE    +
Sbjct: 63  SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLS-------DDSAANKDPENLNTS 115

Query: 92  EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 151
              S +              I  V +   P+G        D+ I++W + ++K+  I + 
Sbjct: 116 SSPSSD------------LYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMILQG 161

Query: 152 DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH 211
                                            +       +   + +    +C      
Sbjct: 162 HEQ------------------DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203

Query: 212 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271
                  ++S          + D  + +W+ E +      +D +  +     + + S  F
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVF 262

Query: 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 331
                  +   S    V+L +++     + + +       S   +  +      +  +  
Sbjct: 263 TR-DGQSVVSGSLDRSVKLWNLQ-----NANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 332 ANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390
             + +++LS      +  WD +    P+   + H +    +     N S           
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQGHRN--SVISVAVANGSSL-------GP 366

Query: 391 DGLHFATGSYSNLLRIFSH 409
           +   FATGS     RI+ +
Sbjct: 367 EYNVFATGSGDCKARIWKY 385

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 38/324 (11%), Positives = 89/324 (27%), Gaps = 49/324 (15%)

Query: 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------------KEMD 152
              + RV +   P  S+ + ++ D TIK+W       ++                  ++ 
Sbjct: 17  RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 153 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH- 211
                     L   + F          H             I +       +  +V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 212 ------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264
                  H   +  +  N D     S  +D  + +W +   +    + + +         
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC---- 190

Query: 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 324
           +  + E      +    S ++   +      S   D + ++      +            
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDN 248

Query: 325 SISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 383
            +  + F + G+ +LS  D   L++WD + +   + T   HE              +   
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHE------------HFVTS- 294

Query: 384 FECSVSGDGLHFATGSYSNLLRIF 407
                     +  TGS    ++++
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 35/310 (11%), Positives = 84/310 (27%), Gaps = 34/310 (10%)

Query: 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168
             KI  + W    +  + + ++ D  + +W            +     ++          
Sbjct: 55  LAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 228
                +     +           ++         + C+ +  +    +    +       
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 229 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT---------EVITSAEFHPIYCNLL 279
                          +S        +  S   D +             +   H    N +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 280 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339
            +  +           +   D + R+    A+          II  I+ + F+  G+ LL
Sbjct: 233 CFFPNGNAFA------TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 340 S-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 398
           +  D  N  +WD    +        H+            + +       V+ DG+  ATG
Sbjct: 287 AGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC---LGVTDDGMAVATG 330

Query: 399 SYSNLLRIFS 408
           S+ + L+I++
Sbjct: 331 SWDSFLKIWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 36/319 (11%), Positives = 83/319 (26%), Gaps = 42/319 (13%)

Query: 103 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDHFPFVS 158
           + +L   E +  V           + +     +K+W +        V ++  ++   ++ 
Sbjct: 45  INTLNHGEVVCAVTIS--NPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101

Query: 159 S-----ENTLLA---EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP 210
           S     +   L    E + ++  +  +       E T +     A   +     C     
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161

Query: 211 HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270
             +    +  +     +     D       + + +      +D    + D          
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221

Query: 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330
                   L Y  +  ++ +     +    H  +  +     H S             +K
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL---------SLK 272

Query: 331 FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 389
           FA  G+  +S      L  W        +   K                S+     C +S
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTP-YGASIFQSKES-------------SSVLS---CDIS 315

Query: 390 GDGLHFATGSYSNLLRIFS 408
            D  +  TGS      ++ 
Sbjct: 316 VDDKYIVTGSGDKKATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 36/327 (11%), Positives = 70/327 (21%), Gaps = 43/327 (13%)

Query: 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 172
           + V  C    G+  +  ++D T+K+W     K  +          SS+       +   +
Sbjct: 17  DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76

Query: 173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF--- 229
                +                      +H +            +  I            
Sbjct: 77  RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136

Query: 230 ---VSADDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSR 285
              V               D    + D +  + +  L                +   S  
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 196

Query: 286 GFVRLVDMRQ-------------------------SALCDHSARILRDAAESHGSKSFFT 320
             +R+ D+                           S   D + +I               
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 321 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380
               S       N    + S D   +KLWD++     +      E          +   +
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNLVTLE-------SGGSGGVV 308

Query: 381 FDKFECSVSGDGLHFATGSYSNLLRIF 407
           +       S   L  A GS +      
Sbjct: 309 WR---IRASNTKLVCAVGSRNGTEETK 332

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 33/306 (10%), Positives = 80/306 (26%), Gaps = 21/306 (6%)

Query: 103 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 162
           L+ +    + ++  +C   +    +    D TIK+W     + K+I    H   V     
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY 63

Query: 163 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 222
                +        S +     +                    +         + +    
Sbjct: 64  -----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 223 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 282
             D  +       R+ + +    +          S   D T  + +         L  + 
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 283 SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341
                ++  D    S   D++ R+     +                      D + ++S 
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLW----DIECGACLRVLEGHEELVRCIRFDNKRIVSG 234

Query: 342 DYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 400
            Y   +K+WD+     P    +           + ++  +F      +  D     + S+
Sbjct: 235 AYDGKIKVWDLVAALDP----RAPAGTLCLRTLVEHSGRVF-----RLQFDEFQIVSSSH 285

Query: 401 SNLLRI 406
            + + I
Sbjct: 286 DDTILI 291

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 35/343 (10%), Positives = 82/343 (23%), Gaps = 29/343 (8%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFET-VGGKNHISRSELEKQMDFTSTSHPEYRYKT 91
           D +S I+   +   L +    G + +++  +  KN      L  +      +  +     
Sbjct: 12  DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71

Query: 92  EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 151
            +            L        +    A  G   I    D  +                
Sbjct: 72  IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN 131

Query: 152 DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH 211
                ++ +N         N+           +    N   +   +              
Sbjct: 132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG 191

Query: 212 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE------ 264
                 +      + E +  +  D R+ +   +     +N           L        
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251

Query: 265 -VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323
             + S EF P     L  + S G +   +++       + + +++ A+ +          
Sbjct: 252 YPVNSIEFSP-RHKFLYTAGSDGIISCWNLQ-------TRKKIKNFAKFN---------- 293

Query: 324 ASISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHE 365
              S +K A     L         K       +  +    I+ 
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYI 335

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	497
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.66
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.34
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.12
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.06
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.05
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.64
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.64
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.6
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.37
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.61
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.56
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.97
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.95
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.57
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.49
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.41
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.19
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.94
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.85
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.69
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.58
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.26
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.75
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.15
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.59
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.47
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.16
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.9
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.27
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.93
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.49

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-39  Score=300.49  Aligned_cols=285  Identities=15%  Similarity=0.203  Sum_probs=227.0

Q ss_pred             cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  107 (497)
Q Consensus        28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  107 (497)
                      .++|.+.|+|++|+|+|++||+|+ ||.|+|||++.+...                  .........+|+          
T Consensus        47 ~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~~h~----------   97 (337)
T d1gxra_          47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCLNRD----------   97 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECSCTT----------
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeecCCC----------
Confidence            346999999999999999999998 799999999875420                  001122345677          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        +.|.+++|  +|++++|++++.|+.|++||+......                                         
T Consensus        98 --~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~-----------------------------------------  132 (337)
T d1gxra_          98 --NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPR-----------------------------------------  132 (337)
T ss_dssp             --SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--E-----------------------------------------
T ss_pred             --CcEEEEEE--cCCCCEEEEeecccccccccccccccc-----------------------------------------
Confidence              88999999  689999999999999999998754321                                         


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                       .... +..|...+..++|+|++..++++ .|+.|++|++. .++....       ...|...|
T Consensus       133 -----------------~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-~~~~~~~-------~~~~~~~v  186 (337)
T d1gxra_         133 -----------------IKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHTDGA  186 (337)
T ss_dssp             -----------------EEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSCE
T ss_pred             -----------------cccc-ccccccccccccccccccccccccccccccccccc-ccccccc-------cccccccc
Confidence                             1112 26788899999999999999998 99999999998 5555544       56789999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      .+++|++++ ..+++++.|+.+++||+++++.+    +.+.              |...|.+++|+|++++|++++ ++.
T Consensus       187 ~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~----~~~~--------------~~~~i~~l~~~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         187 SCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             EEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccc-cccccccccccccccccccceee----cccc--------------cccceEEEEEcccccccceeccccc
Confidence            999999999 99999999999999999987643    2222              346899999999999999985 499


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      +++||++. +... ....|...+               ++++|+|++++|++|+.||.|++||+.+++.+ ..       
T Consensus       248 i~i~d~~~-~~~~-~~~~~~~~i---------------~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~-~~-------  302 (337)
T d1gxra_         248 VEVLHVNK-PDKY-QLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQ-------  302 (337)
T ss_dssp             EEEEETTS-SCEE-EECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EE-------
T ss_pred             cccccccc-cccc-ccccccccc---------------ceEEECCCCCEEEEEeCCCeEEEEECCCCCEE-EE-------
Confidence            99999985 4433 445565543               68999999999999999999999999887433 11       


Q ss_pred             eeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-CceEEEe
Q 010933          426 NRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY  496 (497)
Q Consensus       426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i~~  496 (497)
                                                              ..|...|++++|+|++++||+|+. +.++||.
T Consensus       303 ----------------------------------------~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         303 ----------------------------------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             ----------------------------------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ----------------------------------------ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence                                                    123447888999999999998885 4588886

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-39  Score=303.84  Aligned_cols=310  Identities=19%  Similarity=0.340  Sum_probs=222.6

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ++|++.|+||+|||||++||+|+ |+.|+|||+.+++.........   .  ....+.........+|.           
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-----------  121 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS---A--ANKDPENLNTSSSPSSD-----------  121 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------------CCC-----------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccc---c--ccccccccccccccCCC-----------
Confidence            36999999999999999999997 8899999998875410000000   0  00000011111223344           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|++++|  +|++++|++|+.||.|++|+...++...                                         
T Consensus       122 -~~V~~l~~--s~~~~~l~s~~~dg~v~i~~~~~~~~~~-----------------------------------------  157 (388)
T d1erja_         122 -LYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVM-----------------------------------------  157 (388)
T ss_dssp             -CBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEE-----------------------------------------
T ss_pred             -CCEEEEEE--CCCCCcceeccccccccccccccccccc-----------------------------------------
Confidence             88999999  6899999999999999999988766332                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                         .. .+|...|.++++++++..++++ .++.+++||.+ .......       .. +.....
T Consensus       158 -------------------~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~-------~~-~~~~~~  208 (388)
T d1erja_         158 -------------------IL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLT-------LS-IEDGVT  208 (388)
T ss_dssp             -------------------EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEE-------EE-CSSCEE
T ss_pred             -------------------cc-ccccccccccccccccccccccccceeeeeeecc-ccccccc-------cc-cccccc
Confidence                               12 6899999999999999999999 99999999998 4444332       22 334455


Q ss_pred             EEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          268 SAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       268 ~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      .+.+.+ ++ .+|++++.|+.|++||.+++....    .+..      ......+|...|.+++|+|++++|++++ |+.
T Consensus       209 ~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~----~~~~------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~  277 (388)
T d1erja_         209 TVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVE----RLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  277 (388)
T ss_dssp             EEEECSTTC-CEEEEEETTSCEEEEETTTCCEEE----EEC------------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccCCCC-CeEEEEcCCCeEEEeecccCccce----eecc------ccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence            566665 55 899999999999999999876542    2211      1112346778999999999999999985 599


Q ss_pred             EEEEecCCCCcee------------eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          346 LKLWDIRMDSTPV------------ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       346 i~lwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      |++||++. ....            .....|...               +++++|+|++++|++|+.||.|++||+.+++
T Consensus       278 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         278 VKLWNLQN-ANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             EEEEEC----------------CEEEEEECCSSC---------------EEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEeccC-Cccccccccccccceeeecccccce---------------EEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            99999975 3322            222333332               2689999999999999999999999999985


Q ss_pred             cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ce
Q 010933          414 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SL  492 (497)
Q Consensus       414 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~  492 (497)
                      .+ ..+++|.++|.++++..                                        .++|+|++++||+|+.| .+
T Consensus       342 ~~-~~l~~H~~~V~~~~~~~----------------------------------------~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         342 PL-LMLQGHRNSVISVAVAN----------------------------------------GSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             EE-EEEECCSSCEEEEEECS----------------------------------------SCTTCTTCEEEEEEETTSEE
T ss_pred             EE-EEEeCCCCCEEEEEEec----------------------------------------CcccCCCCCEEEEEeCCCEE
Confidence            54 88999999999888765                                        23567788888887744 47


Q ss_pred             EEEe
Q 010933          493 FFHY  496 (497)
Q Consensus       493 ~i~~  496 (497)
                      +||+
T Consensus       381 ~iW~  384 (388)
T d1erja_         381 RIWK  384 (388)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-38  Score=295.71  Aligned_cols=341  Identities=12%  Similarity=0.144  Sum_probs=236.2

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      .++|+|++|+|||++||+|+.||.|+|||.++++.                     ..+..+++|+            ++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~---------------------~~~~~l~gH~------------~~   53 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------GQ   53 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------SC
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE---------------------EEEEEecCCC------------CC
Confidence            47899999999999999999999999999987643                     5577889999            89


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |.+|+|  +|++++|++++.|++|++||+.++....                                            
T Consensus        54 V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~~~~~~--------------------------------------------   87 (371)
T d1k8kc_          54 VTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKP--------------------------------------------   87 (371)
T ss_dssp             EEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEE--------------------------------------------
T ss_pred             EEEEEE--CCCCCEEEEEECCCeEEEEeeccccccc--------------------------------------------
Confidence            999999  5789999999999999999997655322                                            


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                                    ...+ .+|...|.+++|+|+++.|++| .|+.|++|+++.........    .....|...|.+++
T Consensus        88 --------------~~~~-~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~----~~~~~~~~~v~~v~  148 (371)
T d1k8kc_          88 --------------TLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----HIKKPIRSTVLSLD  148 (371)
T ss_dssp             --------------EEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----EECTTCCSCEEEEE
T ss_pred             --------------cccc-ccccccccccccccccccceeecccCcceeeeeeccccccccc----cccccccccccccc
Confidence                          1112 5788899999999999999999 99999999987443322111    12567889999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCccccccccee-cccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  348 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l  348 (497)
                      |+|++ .+|++++.|+.|++||.............. ...............|...+.+++|+|+|++|++++ |+.|++
T Consensus       149 ~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         149 WHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             ccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceE
Confidence            99999 999999999999999998754322110100 000000011122356788999999999999999985 599999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  428 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  428 (497)
                      ||+.. ++.+..+..|...+               ++++|+|++++|++|+ |+.+++|........ ..+..+......
T Consensus       228 wd~~~-~~~~~~~~~~~~~v---------------~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~-~~~~~~~~~~~~  289 (371)
T d1k8kc_         228 ADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAGH-DCFPVLFTYDSAAGK-LSFGGRLDVPKQ  289 (371)
T ss_dssp             EEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEET-TSSCEEEEEETTTTE-EEECCCCCCC--
T ss_pred             Eeeec-ccceeeeecccccc---------------eeeeecCCCCEEEEEc-CCceEEEEeeCCCce-EEEeeeecCccc
Confidence            99986 88888998887754               6899999998887655 777777776554332 222222111000


Q ss_pred             eEeecCCCcccccccceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCC----CEEEEEe-CCceEEEe
Q 010933          429 PILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTT----NLIACAN-GNSLFFHY  496 (497)
Q Consensus       429 ~~~~~~~~~~~~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~----~~la~~~-~~~~~i~~  496 (497)
                      .....  ...   ...+..  .+.. ... ...........|...|++++++|.+    ..+++++ ++.++||+
T Consensus       290 ~~~~~--~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         290 SSQRG--LTA---RERFQN--LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             --------CH---HHHHHH--CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccc--ccc---eeeEec--ccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            00000  000   000000  0000 000 0001112223588899999999865    3588888 55599997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-37  Score=282.84  Aligned_cols=280  Identities=18%  Similarity=0.253  Sum_probs=236.3

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.++|++++|+|++++||||+.||+|+|||+.+++.                       +.++.+|.           
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------~~~~~~h~-----------   59 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT-----------   59 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS-----------
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEEeCCC-----------
Confidence            36999999999999999999999999999999988744                       67788999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|  ++++.++++++.++.+.+|+.........                                        
T Consensus        60 -~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------   96 (317)
T d1vyhc1          60 -DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT----------------------------------------   96 (317)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC----------------------------------------
T ss_pred             -CcEEEEee--ecccccccccccccccccccccccccccc----------------------------------------
Confidence             88999999  68999999999999999998876552221                                        


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                           +.+|...+.++.++++++.++++ .|+.+++||++ .++....       +.+|...+.
T Consensus        97 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~-------~~~~~~~~~  147 (317)
T d1vyhc1          97 ---------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKT-------FTGHREWVR  147 (317)
T ss_dssp             ---------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCSSCEE
T ss_pred             ---------------------cccccccceeeeccCCCceEEeeccCcceeEeecc-cceeeeE-------EccCCCcce
Confidence                                 26788899999999999999999 99999999999 4445544       678899999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--------------
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--------------  333 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--------------  333 (497)
                      +++|+|++ .+|++++.|+.|++|++++++..    ..+..             |...+.++.|+|              
T Consensus       148 ~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         148 MVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AELRE-------------HRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             eeecccCC-CEEEEEeCCCeEEEEeeccceee----EEEec-------------CCCCceEEEEeeccccceeeccccce
Confidence            99999999 99999999999999999987644    22322             223344444443              


Q ss_pred             ------CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933          334 ------DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  406 (497)
Q Consensus       334 ------~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v  406 (497)
                            .+.++++++ |+.|++||+++ ++++.++.+|...+               .+++|+|++++|++|+.||.|++
T Consensus       210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~s~~~dg~i~i  273 (317)
T d1vyhc1         210 TKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDKTLRV  273 (317)
T ss_dssp             -------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTTEEEE
T ss_pred             eeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCCE---------------EEEEECCCCCEEEEEECCCeEEE
Confidence                  456777775 59999999987 89999999988764               68999999999999999999999


Q ss_pred             EEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       407 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ||+.+++.+ ..+.+|.++|++++|++  ++.+     |++|+.|+. ++|
T Consensus       274 wd~~~~~~~-~~~~~h~~~V~~~~~s~--~~~~-----l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         274 WDYKNKRCM-KTLNAHEHFVTSLDFHK--TAPY-----VVTGSVDQTVKVW  316 (317)
T ss_dssp             ECCTTSCCC-EEEECCSSCEEEEEECS--SSSC-----EEEEETTSEEEEE
T ss_pred             EECCCCcEE-EEEcCCCCCEEEEEEcC--CCCE-----EEEEeCCCeEEEe
Confidence            999988554 89999999999999998  6666     999999998 998

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-36  Score=278.29  Aligned_cols=289  Identities=12%  Similarity=0.143  Sum_probs=222.2

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .+.+.+.+++++|+|+.||.+. ++.|.+|++.+...                       ...+.+|.            
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-----------------------~~~~~~H~------------   58 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS------------   58 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS------------
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce-----------------------eEEEcCCC------------
Confidence            3455677899999999999985 66899999987643                       56678999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      +.|++++|  +|++++|++|+.||+|++||+.++....                                          
T Consensus        59 ~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~------------------------------------------   94 (311)
T d1nr0a1          59 HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHIL------------------------------------------   94 (311)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCE------------------------------------------
T ss_pred             CCEEEEEE--eCCCCeEeccccCceEeeeeeecccccc------------------------------------------
Confidence            88999999  6899999999999999999998765221                                          


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                                      ... +..|...|.+++|+|+++.|+++ .  +..+++|+++ .++...       ++.+|...|
T Consensus        95 ----------------~~~-~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~-~~~~~~-------~l~~h~~~v  149 (311)
T d1nr0a1          95 ----------------KTT-IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-TGTSNG-------NLTGQARAM  149 (311)
T ss_dssp             ----------------EEE-EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-TCCBCB-------CCCCCSSCE
T ss_pred             ----------------ccc-cccccCccccccccccccccccccccccccccccccc-cccccc-------ccccccccc
Confidence                            111 26889999999999999999886 4  5669999998 444443       378899999


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933          267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  345 (497)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~  345 (497)
                      ++++|+|++...|++|+.|+.|++||+++++..    ..+.             +|...|+++.|+|+++++++++ |+.
T Consensus       150 ~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~----~~~~-------------~~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK----STFG-------------EHTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             EEEEECSSSSCEEEEEETTSCEEEEETTTBEEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccceeeecccccccccccccccccccc----cccc-------------cccccccccccCcccccccccccccc
Confidence            999999998456899999999999999987543    3333             3567899999999999999986 599


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc-
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN-  424 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-  424 (497)
                      |++||+.. +..+..+.......     .....   .|++++|+|++++|++|+.||.|+|||+++++. ..++..|.. 
T Consensus       213 v~~~d~~~-~~~~~~~~~~~~~~-----~~h~~---~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~-~~~l~~~~~~  282 (311)
T d1nr0a1         213 IVLYNGVD-GTKTGVFEDDSLKN-----VAHSG---SVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRI  282 (311)
T ss_dssp             EEEEETTT-CCEEEECBCTTSSS-----CSSSS---CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSG
T ss_pred             cccccccc-cccccccccccccc-----ccccc---cccccccCCCCCEEEEEeCCCeEEEEECCCCcE-EEEEECCCCc
Confidence            99999986 66665554321110     00001   137999999999999999999999999998854 467776653 


Q ss_pred             ceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933          425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  457 (497)
Q Consensus       425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~  457 (497)
                      ....+.+.+  .+..     +++++.||. ++|+
T Consensus       283 ~~~~~~~~~--~~~~-----l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         283 EDQQLGIIW--TKQA-----LVSISANGFINFVN  309 (311)
T ss_dssp             GGCEEEEEE--CSSC-----EEEEETTCCEEEEE
T ss_pred             cceEEEEEe--cCCE-----EEEEECCCEEEEEe
Confidence            222333433  2233     788888988 8884

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.9e-36  Score=274.90  Aligned_cols=251  Identities=13%  Similarity=0.196  Sum_probs=204.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|+|++|+|+|++||+|+.||.|+|||+.++..                     .....+.+|.            
T Consensus        56 ~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~------------  102 (311)
T d1nr0a1          56 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------------ILKTTIPVFS------------  102 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------------CEEEEEECSS------------
T ss_pred             CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------------cccccccccc------------
Confidence            6899999999999999999999999999999987643                     3345578888            


Q ss_pred             cceeEEEEEecCCCCEEEEEeC--CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      ++|.+++|  ++++++|++++.  +..+++|+++.++...                                        
T Consensus       103 ~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~----------------------------------------  140 (311)
T d1nr0a1         103 GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGTSNG----------------------------------------  140 (311)
T ss_dssp             SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCCBCB----------------------------------------
T ss_pred             Cccccccc--cccccccccccccccccccccccccccccc----------------------------------------
Confidence            88999999  689999999875  5679999988765322                                        


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                          . +.+|...|.+++|+|+++. |++| .|+.|++||++ ..+....       ...|...
T Consensus       141 --------------------~-l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~-~~~~~~~-------~~~~~~~  191 (311)
T d1nr0a1         141 --------------------N-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKST-------FGEHTKF  191 (311)
T ss_dssp             --------------------C-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEE-------ECCCSSC
T ss_pred             --------------------c-ccccccccccccccccceeeeccccccccccccccc-ccccccc-------ccccccc
Confidence                                1 2688999999999999885 6778 99999999999 5555554       6789999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933          266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  344 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~  344 (497)
                      |+++.|+|++ ++|++++.|+.|++||++++...    ..++.      ......+|...|++++|+|++++|++|+ |+
T Consensus       192 i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         192 VHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccCccc-ccccccccccccccccccccccc----ccccc------cccccccccccccccccCCCCCEEEEEeCCC
Confidence            9999999999 99999999999999999987543    22222      1122356788999999999999999986 59


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      .|+|||+++ +++++++..+.....              ..+.+.+++++|++++.||.|++||.+
T Consensus       261 ~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         261 TIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             eEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999987 888988887754311              134455566789999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-35  Score=271.96  Aligned_cols=299  Identities=14%  Similarity=0.209  Sum_probs=236.1

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      ....+|+||+            ++|++|+|  +|++++|++|+.||+|++||+.+++..                     
T Consensus         8 ~~~~~L~GH~------------~~I~~l~~--sp~~~~l~s~s~Dg~i~iWd~~~~~~~---------------------   52 (317)
T d1vyhc1           8 PEKYALSGHR------------SPVTRVIF--HPVFSVMVSASEDATIKVWDYETGDFE---------------------   52 (317)
T ss_dssp             SCSCEEECCS------------SCEEEEEE--CSSSSEEEEEESSSCEEEEETTTCCCC---------------------
T ss_pred             CccEEEcCCC------------CCeEEEEE--cCCCCEEEEEeCCCeEEEEECCCCCEE---------------------
Confidence            4456789999            99999999  688999999999999999999876632                     


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                             .++ .+|...|.+++|+|++..++++ .++.+.+|+... .
T Consensus        53 ---------------------------------------~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   91 (317)
T d1vyhc1          53 ---------------------------------------RTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-F   91 (317)
T ss_dssp             ---------------------------------------EEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-S
T ss_pred             ---------------------------------------EEE-eCCCCcEEEEeeecccccccccccccccccccccc-c
Confidence                                                   223 7899999999999999999999 999999999883 3


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      .....       +..|...+.++.++|++ ..+++++.|+.+++||+++++..    ..+..             |...+
T Consensus        92 ~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~----~~~~~-------------~~~~~  146 (317)
T d1vyhc1          92 ECIRT-------MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTFTG-------------HREWV  146 (317)
T ss_dssp             CEEEC-------CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCE
T ss_pred             ccccc-------cccccccceeeeccCCC-ceEEeeccCcceeEeecccceee----eEEcc-------------CCCcc
Confidence            33332       67889999999999999 99999999999999999987644    33333             45789


Q ss_pred             cEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCC-----CccceeEEEEcCCCCEEEEEeC
Q 010933          327 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND-----SIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      .+++|+|++++|++++ ++.|++|++.. ++.+..+..|...+..+.......     .........+..++.++++++.
T Consensus       147 ~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         147 RMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             eeeecccCCCEEEEEeCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            9999999999999986 59999999986 788888877766542111000000     0000011223334568999999


Q ss_pred             CCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEE
Q 010933          401 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAW  477 (497)
Q Consensus       401 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~  477 (497)
                      |+.|++|++.+++. ...+.+|..++.+++++|  ++.+     |++|+.|+. ++|  ..++....+.+|...|++++|
T Consensus       226 d~~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~--~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~  297 (317)
T d1vyhc1         226 DKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHS--GGKF-----ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF  297 (317)
T ss_dssp             TSEEEEEETTTTEE-EEEEECCSSCEEEEEECS--SSSC-----EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred             CCEEEEEECCCCcE-EEEEeCCCCCEEEEEECC--CCCE-----EEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            99999999998854 488999999999999999  6666     999999999 999  445566677789999999999


Q ss_pred             ecCCCEEEEEeCC-ceEEEe
Q 010933          478 HPTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       478 ~p~~~~la~~~~~-~~~i~~  496 (497)
                      +|++++||+|+.| .++||.
T Consensus       298 s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         298 HKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSSSCEEEEETTSEEEEEC
T ss_pred             cCCCCEEEEEeCCCeEEEeC
Confidence            9999999999965 499994

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-36  Score=279.30  Aligned_cols=286  Identities=17%  Similarity=0.274  Sum_probs=216.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|+|++|+|++++||+|+.||+|+|||+.+++.                       +..+..|.            
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-----------------------~~~~~~~~------------   97 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS------------   97 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSC------------
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-----------------------EEEEeccc------------
Confidence            5999999999999999999999999999999988743                       67788898            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  +|++.++++++.|+.+++|+................         +.+ ............+..  ...+
T Consensus        98 ~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~--~~~~  163 (340)
T d1tbga_          98 SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG---------HTG-YLSCCRFLDDNQIVT--SSGD  163 (340)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECC---------CSS-CEEEEEEEETTEEEE--EETT
T ss_pred             ccEEeeEe--eccceeeeeecccceeecccccccccccccceeccc---------ccc-ccccccccccccccc--cccc
Confidence            88999999  689999999999999999998764422111000000         000 000000000000000  1113


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                      .....+.....   ..... ...+...+....+.+.+..+++| .|+.|++||++ .++....       +.+|...|++
T Consensus       164 ~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~-~~~~~~~-------~~~h~~~i~~  231 (340)
T d1tbga_         164 TTCALWDIETG---QQTTT-FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQT-------FTGHESDINA  231 (340)
T ss_dssp             TEEEEEETTTT---EEEEE-EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTEEEEE-------ECCCSSCEEE
T ss_pred             ccccccccccc---ccccc-ccccceeEeeeccccccceeEEeecCceEEEEECC-CCcEEEE-------EeCCCCCeEE
Confidence            34444444322   11222 24667788999999999999999 99999999998 5556554       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~  347 (497)
                      ++|+|++ .+|++++.|+.|++||++.....    ..+..           ..+...+.+++|+|++++|++|+. |.|+
T Consensus       232 v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~----~~~~~-----------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~  295 (340)
T d1tbga_         232 ICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDDFNCN  295 (340)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECSSSCEEEEEETTSCEE
T ss_pred             EEECCCC-CEEEEEeCCCeEEEEeecccccc----ccccc-----------ccccCceEEEEECCCCCEEEEEECCCEEE
Confidence            9999999 99999999999999999876543    22221           223467999999999999999864 9999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      +||+.+ ++++..+.+|...+               ++++|+|++++|++|+.||.|+|||
T Consensus       296 iwd~~~-~~~~~~~~~H~~~V---------------~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         296 VWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCC-CcEEEEEcCCCCCE---------------EEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999986 89999999998765               7999999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.9e-35  Score=265.42  Aligned_cols=245  Identities=15%  Similarity=0.209  Sum_probs=191.5

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cccCcccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSLE  107 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~  107 (497)
                      .+|.++|+|++|+|+|++||+|+.||.|++||+++++.                       ...+ .+|.          
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~h~----------   55 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-----------------------NRVFPDVHA----------   55 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EECSSCSCS----------
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----------------------EEEEcCCCC----------
Confidence            36999999999999999999999999999999988753                       3444 4677          


Q ss_pred             cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        ..|++++|  +|++. +++++.|+.+++|+..........                                      
T Consensus        56 --~~v~~v~~--~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~--------------------------------------   92 (299)
T d1nr0a2          56 --TMITGIKT--TSKGD-LFTVSWDDHLKVVPAGGSGVDSSK--------------------------------------   92 (299)
T ss_dssp             --SCEEEEEE--CTTSC-EEEEETTTEEEEECSSSSSSCTTS--------------------------------------
T ss_pred             --CcEEEEEe--eccce-eecccceeeEEEeccCCccccccc--------------------------------------
Confidence              88999999  57765 677788999999998654321110                                      


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                          .....+...+.+++++++++.++++.++.+.+|+..   +....         .....+.
T Consensus        93 --------------------~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~---~~~~~---------~~~~~~~  140 (299)
T d1nr0a2          93 --------------------AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEV---------PISYNSS  140 (299)
T ss_dssp             --------------------CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT---EEEEE---------ECSSCEE
T ss_pred             --------------------cccccccccccccccccccccccccccccccccccc---ccccc---------ccccccc
Confidence                                001456778899999999998888877899999865   22222         1334578


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i  346 (497)
                      +++|+|++ .+|++++.|+.|++||+++++..    .. .           ...|...|++++|+|++++|++++. +.|
T Consensus       141 ~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~----~~-~-----------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  203 (299)
T d1nr0a2         141 CVALSNDK-QFVAVGGQDSKVHVYKLSGASVS----EV-K-----------TIVHPAEITSVAFSNNGAFLVATDQSRKV  203 (299)
T ss_dssp             EEEECTTS-CEEEEEETTSEEEEEEEETTEEE----EE-E-----------EEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccc-ccccccccccccccccccccccc----cc-c-----------ccccccccccccccccccccccccccccc
Confidence            89999999 99999999999999999876432    11 1           1235578999999999999999864 999


Q ss_pred             EEEecCCCCcee---eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          347 KLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       347 ~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      ++||+.+ +...   ..+.+|...+               ++++|+|++++|++|+.||.|++||++++..
T Consensus       204 ~~~~~~~-~~~~~~~~~~~~h~~~v---------------~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         204 IPYSVAN-NFELAHTNSWTFHTAKV---------------ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EEEEGGG-TTEESCCCCCCCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccccccc-ccccccccccccccccc---------------ccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            9999986 4433   3345555543               6899999999999999999999999987644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-34  Score=264.01  Aligned_cols=240  Identities=18%  Similarity=0.287  Sum_probs=202.3

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ..|.+.|++++|+|+|++||+|+.||.|++||+.....                     +....+.+|.           
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~-----------  141 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------------------RIKAELTSSA-----------  141 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------------EEEEEEECSS-----------
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc---------------------cccccccccc-----------
Confidence            46889999999999999999999999999999876432                     4456677888           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|..++|  ++++.++++++.|+.|++|++.+++...                                         
T Consensus       142 -~~v~~~~~--~~~~~~l~s~~~d~~i~~~~~~~~~~~~-----------------------------------------  177 (337)
T d1gxra_         142 -PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVR-----------------------------------------  177 (337)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEE-----------------------------------------
T ss_pred             -cccccccc--cccccccccccccccccccccccccccc-----------------------------------------
Confidence             88999999  6899999999999999999998766322                                         


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                         .. .+|...|.+++|+++++.+++| .|+.+++||++ .++.+..        ..|...|.
T Consensus       178 -------------------~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~-~~~~~~~--------~~~~~~i~  228 (337)
T d1gxra_         178 -------------------QF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQ--------HDFTSQIF  228 (337)
T ss_dssp             -------------------EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEE--------EECSSCEE
T ss_pred             -------------------cc-cccccccccccccccccccccccccccccccccc-cceeecc--------cccccceE
Confidence                               11 6788999999999999999999 99999999998 5555543        24778999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      +++|+|++ .+|++++.|+.+++||+++++..    . .             ..|...|++++|+|++++|++++ |+.|
T Consensus       229 ~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~-~-------------~~~~~~i~~v~~s~~g~~l~s~s~Dg~i  289 (337)
T d1gxra_         229 SLGYCPTG-EWLAVGMESSNVEVLHVNKPDKY----Q-L-------------HLHESCVLSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETTSSCEE----E-E-------------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEcccc-cccceeccccccccccccccccc----c-c-------------cccccccceEEECCCCCEEEEEeCCCeE
Confidence            99999999 99999999999999999887532    1 1             23567899999999999999985 5999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      ++||+.+ ++.+..+. |...+               ++++|+|++++|++|+.||.|+|||+
T Consensus       290 ~iwd~~~-~~~~~~~~-~~~~v---------------~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         290 NAWRTPY-GASIFQSK-ESSSV---------------LSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTT-CCEEEEEE-CSSCE---------------EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEECCC-CCEEEEcc-CCCCE---------------EEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999986 77777665 33432               68999999999999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-33  Score=259.53  Aligned_cols=318  Identities=12%  Similarity=0.206  Sum_probs=230.7

Q ss_pred             cCCcce-EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I-~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      +|.+.| +|++|  +|++||+|+.||+|+|||+.+++                       .+.++.+|+           
T Consensus        10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~-----------   53 (355)
T d1nexb2          10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD-----------   53 (355)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-----------------------EEEEEECCS-----------
T ss_pred             CcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEECCC-----------
Confidence            588775 67665  57899999999999999998764                       478899999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ++|++++|+  + +.+|++++.|+.|++|+...........                                      
T Consensus        54 -~~V~~l~~s--~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~--------------------------------------   91 (355)
T d1nexb2          54 -GGVWALKYA--H-GGILVSGSTDRTVRVWDIKKGCCTHVFE--------------------------------------   91 (355)
T ss_dssp             -SCEEEEEEE--T-TTEEEEEETTCCEEEEETTTTEEEEEEC--------------------------------------
T ss_pred             -CCEEEEEEc--C-CCEEEEEecccccccccccccccccccc--------------------------------------
Confidence             999999994  4 4589999999999999998766432210                                      


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC--------C---
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--------P---  256 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--------~---  256 (497)
                                           ...+........+.++++.++++ .|+.|++||++............        +   
T Consensus        92 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d1nexb2          92 ---------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  150 (355)
T ss_dssp             ---------------------CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTC
T ss_pred             ---------------------cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccc
Confidence                                 02223344556678899999998 99999999998432211100000        0   


Q ss_pred             ----CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933          257 ----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  332 (497)
Q Consensus       257 ----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  332 (497)
                          .....|...+.  .+.+++ ++++++..|+.|++||+++++..    .....             +...+.++.++
T Consensus       151 ~~~~~~~~~~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~~~-------------~~~~~~~~~~~  210 (355)
T d1nexb2         151 PYFVGVLRGHMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILSG-------------HTDRIYSTIYD  210 (355)
T ss_dssp             TTEEEEEECCSSCEE--EEEEET-TEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEEE
T ss_pred             cceeeeeeecccccc--cccccc-ceeeeecccceeeeeecccccce----eeeec-------------ccccccccccc
Confidence                00112233333  345566 88999999999999999987543    23222             34678899999


Q ss_pred             eCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          333 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       333 ~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      |++.++++++ |+.|++||+++ +..+..+.+|...+               .+++|+  +++|++|+.||.|++||+.+
T Consensus       211 ~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         211 HERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             TTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCC---------------CEEEEC--SSEEEEECTTSEEEEEETTT
T ss_pred             ccceeeecccccceEEeeeccc-cccccccccccccc---------------cccccc--cceeeeeecccccccccccc
Confidence            9999999985 59999999987 88899999998765               577775  57999999999999999987


Q ss_pred             CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcc-cccccCCCeEEEEEecCCCEEEEE
Q 010933          412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHE-LSYNLSSKLLHLAWHPTTNLIACA  487 (497)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~-~~~~~~~~i~~l~~~p~~~~la~~  487 (497)
                      ..   ..+..|...+..+.+.+. ++.+     +++ +.|+. ++|  .+++.+. ...+|..+|.+++|+|+ .+++++
T Consensus       273 ~~---~~~~~~~~~~~~~~~~~~-~~~~-----l~~-g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~  341 (355)
T d1nexb2         273 YS---RKFSYHHTNLSAITTFYV-SDNI-----LVS-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAV  341 (355)
T ss_dssp             CC---EEEEEECTTCCCCCEEEE-CSSE-----EEE-EETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEE
T ss_pred             cc---eecccccCCceEEEEEcC-CCCE-----EEE-EeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEE
Confidence            63   456778888887766543 4444     454 45777 999  4455543 46788999999999987 466666


Q ss_pred             e-CCceEEE
Q 010933          488 N-GNSLFFH  495 (497)
Q Consensus       488 ~-~~~~~i~  495 (497)
                      + ++.++||
T Consensus       342 s~dg~~~l~  350 (355)
T d1nexb2         342 EKDGQSFLE  350 (355)
T ss_dssp             ESSSCEEEE
T ss_pred             ECCCcEEEE
Confidence            6 4456776

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-32  Score=254.19  Aligned_cols=290  Identities=15%  Similarity=0.156  Sum_probs=232.4

Q ss_pred             cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933           86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  165 (497)
Q Consensus        86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (497)
                      ..+..++|+||+            ++|++|+|  +|++.+|++|+.||+|++||+.+++...                  
T Consensus        44 ~~~~~~tL~GH~------------~~I~~l~~--s~~~~~l~sgs~Dg~v~iWd~~~~~~~~------------------   91 (340)
T d1tbga_          44 QMRTRRTLRGHL------------AKIYAMHW--GTDSRLLVSASQDGKLIIWDSYTTNKVH------------------   91 (340)
T ss_dssp             CCCEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEEEE------------------
T ss_pred             ceeeeEEECCCC------------CCEEEEEE--CCCCCEEEEEECCCceeeeecccceeEE------------------
Confidence            445677899999            99999999  6899999999999999999998776332                  


Q ss_pred             ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc
Q 010933          166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  244 (497)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  244 (497)
                                                                .+ ..|...|.+++|+|+++++++| .|+.+.+|+...
T Consensus        92 ------------------------------------------~~-~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          92 ------------------------------------------AI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             ------------------------------------------EE-ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSS
T ss_pred             ------------------------------------------EE-ecccccEEeeEeeccceeeeeecccceeecccccc
Confidence                                                      22 6889999999999999999999 999999999874


Q ss_pred             CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc
Q 010933          245 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  324 (497)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (497)
                      ........    ..+.+|............  ..++....+.....++.......    ...             ..+..
T Consensus       129 ~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~~~  185 (340)
T d1tbga_         129 REGNVRVS----RELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQT----TTF-------------TGHTG  185 (340)
T ss_dssp             SCSCCCEE----EEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEE----EEE-------------ECCSS
T ss_pred             cccccccc----eecccccccccccccccc--ccccccccccccccccccccccc----ccc-------------cccce
Confidence            33221110    125667777666666655  57888889999999988765322    111             11235


Q ss_pred             cccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933          325 SISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  403 (497)
Q Consensus       325 ~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  403 (497)
                      .+....+.+.+.+++++. ++.|++||+++ ++++..+.+|...+               ++++|+|++++|++|+.||.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~h~~~i---------------~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSC
T ss_pred             eEeeeccccccceeEEeecCceEEEEECCC-CcEEEEEeCCCCCe---------------EEEEECCCCCEEEEEeCCCe
Confidence            688888999999999885 59999999986 88999999888764               78999999999999999999


Q ss_pred             EEEEEcCCCCcce-EEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEec
Q 010933          404 LRIFSHGVGSAGG-ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHP  479 (497)
Q Consensus       404 i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p  479 (497)
                      |++|++....... .....+..++..+++++  ++.+     |++|+.|+. ++|  ..++....+.+|..+|++++|+|
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~  322 (340)
T d1tbga_         250 CRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECS--SSCE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEEeecccccccccccccccCceEEEEECC--CCCE-----EEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence            9999998875442 12346677899999998  6666     999999999 999  45566667788999999999999


Q ss_pred             CCCEEEEEeC-CceEEEe
Q 010933          480 TTNLIACANG-NSLFFHY  496 (497)
Q Consensus       480 ~~~~la~~~~-~~~~i~~  496 (497)
                      ++++||+|+. +.++||+
T Consensus       323 d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEccCCEEEEeC
Confidence            9999999985 5599996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-32  Score=253.99  Aligned_cols=269  Identities=12%  Similarity=0.099  Sum_probs=198.7

Q ss_pred             cceEEEEEcCCCCEEEEeecCC-eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           33 DIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        33 ~~I~~i~~sp~g~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ..+++++|+|+|+.||.++.+. .|+.|+....+                     ......+.+|..           ..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~gh~~-----------~~   65 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK---------------------VPPVVQFTGHGS-----------SV   65 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS---------------------SCSEEEECTTTT-----------SC
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC---------------------ccceEEEeCCCC-----------CC
Confidence            4568999999999999987543 24445543322                     233556677751           67


Q ss_pred             eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933          112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  191 (497)
Q Consensus       112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (497)
                      |++++|+|..++.+|++++.||+|++||+..+........                                        
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~----------------------------------------  105 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV----------------------------------------  105 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE----------------------------------------
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeec----------------------------------------
Confidence            9999997766888999999999999999987653321100                                        


Q ss_pred             eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                  .....+ ..|..+|.+++|+++++.++++   .++.+.+|+.+ .++....       +.+|...|.+
T Consensus       106 ------------~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~h~~~v~~  164 (325)
T d1pgua1         106 ------------NVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGE-------VSGHSQRINA  164 (325)
T ss_dssp             ------------EEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEE-------CCSCSSCEEE
T ss_pred             ------------cccccc-ccccCcEEEEEECCCCCccceeeccccceEEEEeec-cccccee-------eeeccccccc
Confidence                        011112 5788899999999999998774   47789999998 5555554       6789999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe-cCeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~~~i  346 (497)
                      ++|+|+++.++++++.|+.+++||.+..+..    .....          +..|...|.+++|+|+ +.+|++++ |+.|
T Consensus       165 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~----~~~~~----------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i  230 (325)
T d1pgua1         165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----ASDRT----------HHKQGSFVRDVEFSPDSGEFVITVGSDRKI  230 (325)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTTBEEE----EEECS----------SSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred             ccccccccceEEEeecccccccccccccccc----eeccc----------ccCCCCccEEeeeccccceeccccccccce
Confidence            9999998556888999999999999876533    22211          2345678999999997 57888875 6999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                      ++||+++ ++.+..+.+|...+...           +.++.| |++++|++++.|+.|+|||+++++.+ ..+..|
T Consensus       231 ~iwd~~~-~~~~~~l~~~~~~v~~~-----------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~  292 (325)
T d1pgua1         231 SCFDGKS-GEFLKYIEDDQEPVQGG-----------IFALSW-LDSQKFATVGADATIRVWDVTTSKCV-QKWTLD  292 (325)
T ss_dssp             EEEETTT-CCEEEECCBTTBCCCSC-----------EEEEEE-SSSSEEEEEETTSEEEEEETTTTEEE-EEEECC
T ss_pred             eeeeecc-ccccccccccccccccc-----------eeeeec-cCCCEEEEEeCCCeEEEEECCCCCEE-EEEEec
Confidence            9999987 88899999887754211           023333 68999999999999999999987443 444333

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-33  Score=263.28  Aligned_cols=259  Identities=16%  Similarity=0.266  Sum_probs=197.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|...|++++|+|+|++|++|+.||.|++||...++                       .+..+.+|.            
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~-----------------------~~~~~~~h~------------  163 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----------------------IVMILQGHE------------  163 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccc-----------------------ccccccccc------------
Confidence            577889999999999999999999999999988764                       366678888            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.+++|  ++++..+++++.++.+++||..+......                                         
T Consensus       164 ~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-----------------------------------------  200 (388)
T d1erja_         164 QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLT-----------------------------------------  200 (388)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred             cccccccc--ccccccccccccceeeeeeeccccccccc-----------------------------------------
Confidence            88999999  67889999999999999999886553221                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEe-CCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                         . ..+. ...++.+ .+++++|++| .|+.|++||.+ .+.....+........+|...|.
T Consensus       201 -------------------~-~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~h~~~v~  258 (388)
T d1erja_         201 -------------------L-SIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVY  258 (388)
T ss_dssp             -------------------E-ECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEE
T ss_pred             -------------------c-cccc-ccccccccCCCCCeEEEEcCCCeEEEeecc-cCccceeeccccccccCCCCCEE
Confidence                               1 2333 3444555 5588999998 99999999998 44444444333344567999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      +++|+|++ .+|++++.||.|++||++++.....    ... ............|...|.+++|+|++++|++|+ ||.|
T Consensus       259 ~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i  332 (388)
T d1erja_         259 SVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV  332 (388)
T ss_dssp             EEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             EEEECCCC-CEEEEEECCCcEEEEeccCCccccc----ccc-ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEE
Confidence            99999999 9999999999999999987654311    111 011111223456778999999999999999986 4999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEE------EcCCCCEEEEEeCCCcEEEEEcC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS------VSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      ++||+++ ++++.++++|...+               ++++      |+|++++|++|+.||+|+||+++
T Consensus       333 ~vwd~~~-~~~~~~l~~H~~~V---------------~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         333 LFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEECCC-CcEEEEEeCCCCCE---------------EEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999997 89999999998865               4454      57899999999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-32  Score=250.08  Aligned_cols=307  Identities=14%  Similarity=0.179  Sum_probs=223.4

Q ss_pred             ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .+|.+.|.+ +++++|++||||+.||+|+|||+.+++                       ++.++.+|.           
T Consensus        13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~~~~h~-----------   57 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT-----------   57 (342)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS-----------
T ss_pred             CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEEeCCC-----------
Confidence            369998865 366689999999999999999998874                       377889999           


Q ss_pred             ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                       ..|.+++|.  ++  +|++++.|+.+++|+..........                                       
T Consensus        58 -~~V~~v~~~--~~--~l~s~s~D~~~~~~~~~~~~~~~~~---------------------------------------   93 (342)
T d2ovrb2          58 -GGVWSSQMR--DN--IIISGSTDRTLKVWNAETGECIHTL---------------------------------------   93 (342)
T ss_dssp             -SCEEEEEEE--TT--EEEEEETTSCEEEEETTTTEEEEEE---------------------------------------
T ss_pred             -CCEEEEEeC--CC--ccccceecccccccccccccceecc---------------------------------------
Confidence             899999994  44  9999999999999998765532210                                       


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  267 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  267 (497)
                                            ..+...+.....  ....+..+ .|+.+.+|+.... +....       +..+...  
T Consensus        94 ----------------------~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~-~~~~~-------~~~~~~~--  139 (342)
T d2ovrb2          94 ----------------------YGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETG-QCLHV-------LMGHVAA--  139 (342)
T ss_dssp             ----------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSC-CEEEE-------EECCSSC--
T ss_pred             ----------------------cccceeEeeeec--ccccccccccceeEEEeecccc-cceee-------eeccccc--
Confidence                                  233334444333  34466677 9999999999844 33333       1222222  


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  346 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i  346 (497)
                      .....+.. ..+++++.|+.|++||.+..+..    ..+..             |  ......+++++.++++++ |+.|
T Consensus       140 ~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~~~-------------~--~~~~~~~~~~~~~l~s~~~dg~i  199 (342)
T d2ovrb2         140 VRCVQYDG-RRVVSGAYDFMVKVWDPETETCL----HTLQG-------------H--TNRVYSLQFDGIHVVSGSLDTSI  199 (342)
T ss_dssp             EEEEEECS-SCEEEEETTSCEEEEEGGGTEEE----EEECC-------------C--SSCEEEEEECSSEEEEEETTSCE
T ss_pred             ceeecccc-ceeeeecCCCeEEEeecccceee----EEEcC-------------c--ccccccccCCCCEEEEEeCCCeE
Confidence            22334444 67899999999999999876543    33333             2  244556677899999985 5999


Q ss_pred             EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec---cC
Q 010933          347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GK  423 (497)
Q Consensus       347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~---~~  423 (497)
                      ++||++. ++++..+.+|...+               .++++  ++++|++|+.||.|++||+...+.. ..+..   |.
T Consensus       200 ~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~  260 (342)
T d2ovrb2         200 RVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQ  260 (342)
T ss_dssp             EEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCS
T ss_pred             EEeeccc-ceeeeEecccccce---------------eEEec--CCCEEEEEcCCCEEEEEeccccccc-ccccccceee
Confidence            9999986 88888888887753               34544  5679999999999999999887544 55554   44


Q ss_pred             cceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccc-----cccCCCeEEEEEecCCCEEEEEeCCc----
Q 010933          424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS----  491 (497)
Q Consensus       424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~-----~~~~~~i~~l~~~p~~~~la~~~~~~----  491 (497)
                      ..+..+.+.+    .+     +++|+.||. ++|  .+++.+..+     .+|...|++++|+|++.+||+|+.++    
T Consensus       261 ~~~~~~~~~~----~~-----~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~  331 (342)
T d2ovrb2         261 SAVTCLQFNK----NF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET  331 (342)
T ss_dssp             SCEEEEEECS----SE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred             eceeecccCC----Ce-----eEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCee
Confidence            5555555543    34     899999999 999  344443332     35778899999999999999999776    


Q ss_pred             -eEEEe
Q 010933          492 -LFFHY  496 (497)
Q Consensus       492 -~~i~~  496 (497)
                       +++|.
T Consensus       332 ~l~~~D  337 (342)
T d2ovrb2         332 KLLVLD  337 (342)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence             77775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-32  Score=254.60  Aligned_cols=242  Identities=10%  Similarity=0.096  Sum_probs=187.4

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|++++|  +|++++|++++.|+.|++|++.+++..                                           
T Consensus         8 ~pIt~~~~--s~dg~~la~~~~~~~i~iw~~~~~~~~-------------------------------------------   42 (371)
T d1k8kc_           8 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWV-------------------------------------------   42 (371)
T ss_dssp             SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEE-------------------------------------------
T ss_pred             CCeEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCEE-------------------------------------------
Confidence            77999999  789999999999999999998766532                                           


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                     ++..+ .+|...|.+++|+|++++|++| .|+.|++||++ .+......     .+.+|...|.+
T Consensus        43 ---------------~~~~l-~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~-~~~~~~~~-----~~~~~~~~v~~  100 (371)
T d1k8kc_          43 ---------------QVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTL-----VILRINRAARC  100 (371)
T ss_dssp             ---------------EEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEE-----ECCCCSSCEEE
T ss_pred             ---------------EEEEe-cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec-cccccccc-----ccccccccccc
Confidence                           22222 7999999999999999999999 99999999998 34333221     25678999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++|+|++ +.|++++.|+.|++|++............             ...|...|.+++|+|++++|++|+ |+.|+
T Consensus       101 i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_         101 VRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHI-------------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEE-------------CTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccc-ccceeecccCcceeeeeeccccccccccc-------------ccccccccccccccccccceeccccCcEEE
Confidence            9999999 99999999999999998765432111111             234567899999999999999985 59999


Q ss_pred             EEecCCCC-----------------ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          348 LWDIRMDS-----------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       348 lwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                      +||+....                 ..+.....|...               +.+++|+|++++|++++.|+.|++||+.
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCc---------------EEEEEeecccccccccccCCcceEEeee
Confidence            99986421                 112222233322               3689999999999999999999999999


Q ss_pred             CCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          411 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       411 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ++.. ...+..|..+|.+++|++  ++.+     +++|. |+. .+|
T Consensus       232 ~~~~-~~~~~~~~~~v~s~~fs~--d~~~-----la~g~-d~~~~~~  269 (371)
T d1k8kc_         232 KKMA-VATLASETLPLLAVTFIT--ESSL-----VAAGH-DCFPVLF  269 (371)
T ss_dssp             GTTE-EEEEECSSCCEEEEEEEE--TTEE-----EEEET-TSSCEEE
T ss_pred             cccc-eeeeecccccceeeeecC--CCCE-----EEEEc-CCceEEE
Confidence            8754 477888888888888887  5555     55554 444 665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-31  Score=249.52  Aligned_cols=292  Identities=10%  Similarity=0.105  Sum_probs=196.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.+.|.++++++  ++|+||+.|++|+|||..+.+..                .| .........|.            
T Consensus        12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~----------------~~-~~~~~~~~~~~------------   60 (393)
T d1sq9a_          12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE----------------NP-KDKSYSHFVHK------------   60 (393)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC----------------CG-GGGEEEEECCT------------
T ss_pred             cccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCC----------------cc-cceeEeeeecc------------
Confidence            5999999999875  69999999999999998765420                00 01111122233            


Q ss_pred             cceeEEEE---Ee--cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          110 EKINRVRW---CA--APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       110 ~~i~~l~~---~~--s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      ..+..+..   .+  ..+..++++++.||.|++|++..........                                  
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~----------------------------------  106 (393)
T d1sq9a_          61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI----------------------------------  106 (393)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEE----------------------------------
T ss_pred             CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeee----------------------------------
Confidence            22222222   11  1233467788999999999987644221100                                  


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-----CCEEEEE-cCCeEEEEeCccCceee---------
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCF---------  249 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~---------  249 (497)
                               .....      ...  ...+...++.++|.++     +..++++ .|+.+++|++.......         
T Consensus       107 ---------~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_         107 ---------FEKLD------LLD--SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             ---------EEEEC------CSC--TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             ---------ccccc------eee--eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence                     00000      000  0234556777777664     4567777 99999999985321100         


Q ss_pred             -EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          250 -NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       250 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                       ............+...+.+++|+|++  +||+|+.||.|++||+++++.+    ..++.       ...+.+|..+|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~-------~~~l~~h~~~V~~  236 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES-------QHSMINNSNSIRS  236 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC-------CC---CCCCCEEE
T ss_pred             ceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----ccccc-------ccccccccceEEE
Confidence             00000112234566778999999986  8899999999999999987654    22222       1234567899999


Q ss_pred             EEEeeCCCEEEEEe-cC---eEEEEecCCCCceeeeee-------------ecccccccccccCCCCCccceeEEEEcCC
Q 010933          329 IKFANDGQHLLSRD-YM---NLKLWDIRMDSTPVATFK-------------IHEHLRPKLCDLYNNDSIFDKFECSVSGD  391 (497)
Q Consensus       329 ~~~s~~g~~l~~~~-~~---~i~lwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  391 (497)
                      ++|+|+|++|++|+ |+   .|++||+++ ++++..+.             +|...|               ++++|+||
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V---------------~~l~fspd  300 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV---------------MSLSFNDS  300 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE---------------EEEEECSS
T ss_pred             cccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCce---------------eeeccCCC
Confidence            99999999999985 34   599999987 77777664             444433               79999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee----eEeec
Q 010933          392 GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK----PILQA  433 (497)
Q Consensus       392 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~----~~~~~  433 (497)
                      +++|++|+.|++|+|||+++++. ..++++|.++|..    +++.+
T Consensus       301 ~~~l~S~s~D~~v~vWd~~~g~~-~~~l~gH~~~v~~~~~~~~~~~  345 (393)
T d1sq9a_         301 GETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDE  345 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCT
T ss_pred             CCeeEEECCCCEEEEEECCCCCE-EEEECCcCCcccCCccEEEECC
Confidence            99999999999999999999854 5899999998864    55555

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-30  Score=240.22  Aligned_cols=255  Identities=16%  Similarity=0.210  Sum_probs=189.0

Q ss_pred             cC-CcceEEEEEcC--CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           30 QD-VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        30 ~h-~~~I~~i~~sp--~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      +| ...|++++|+|  +|++||+|+.||+|+|||+..++....               ........+..|.         
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~---------------~~~~~~~~~~~~~---------  115 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS---------------VEVNVKSEFQVLA---------  115 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE---------------EEEEEEEEEECCS---------
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee---------------eeccccccccccc---------
Confidence            45 56899999998  678999999999999999976543100               0111122345566         


Q ss_pred             ccccceeEEEEEecCCCCEEEEEe--CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                         ++|.+++|  +++++++++++  .++.+++|+.++++..                                      
T Consensus       116 ---~~v~~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------------------------  152 (325)
T d1pgua1         116 ---GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDSGNSL--------------------------------------  152 (325)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTTCCEE--------------------------------------
T ss_pred             ---CcEEEEEE--CCCCCccceeeccccceEEEEeecccccc--------------------------------------
Confidence               88999999  68999988876  4678999998766532                                      


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                            ..+ .+|...|.+++|+|+++. ++++ .|+.+++||... .+.....    .....|
T Consensus       153 ----------------------~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~-~~~~~~~----~~~~~~  204 (325)
T d1pgua1         153 ----------------------GEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASD----RTHHKQ  204 (325)
T ss_dssp             ----------------------EEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEE----CSSSCT
T ss_pred             ----------------------eee-eecccccccccccccccceEEEeecccccccccccc-cccceec----ccccCC
Confidence                                  222 689999999999998876 5567 999999999883 3333321    235678


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe---eCCCEEE
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---NDGQHLL  339 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~g~~l~  339 (497)
                      ...|.+++|+|++..+|++++.|+.|++||+++++.+    ..+..             |...+..+.|+   |+|++|+
T Consensus       205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~-------------~~~~v~~~~~s~~~~dg~~l~  267 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL----KYIED-------------DQEPVQGGIFALSWLDSQKFA  267 (325)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE----EECCB-------------TTBCCCSCEEEEEESSSSEEE
T ss_pred             CCccEEeeeccccceeccccccccceeeeeecccccc----ccccc-------------cccccccceeeeeccCCCEEE
Confidence            8999999999975489999999999999999988654    44444             33445555554   6889999


Q ss_pred             EEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933          340 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  409 (497)
Q Consensus       340 ~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~  409 (497)
                      +++ |+.|+|||+++ ++++..+..+...+....           ..+.+.++ .+|++++.||.|++||+
T Consensus       268 s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         268 TVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQ-----------VGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSEEEEEETTT-TEEEEEEECCTTCGGGCE-----------EEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EEeCCCeEEEEECCC-CCEEEEEEecCCcccCeE-----------EEEEECCC-CEEEEEECCCEEEEEEC
Confidence            875 59999999986 888988887766432111           23444433 47899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-29  Score=224.82  Aligned_cols=269  Identities=12%  Similarity=0.211  Sum_probs=204.5

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|...|+|++|  ||++||+|+.||+|+|||+.+++                       ++.++++|+            
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~------------   55 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------   55 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEecCC------------
Confidence            47889999765  79999999999999999998774                       478889999            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|++++|    ++++|++++.|+.|++|++..+......                                        
T Consensus        56 ~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~----------------------------------------   91 (293)
T d1p22a2          56 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTL----------------------------------------   91 (293)
T ss_dssp             SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEE----------------------------------------
T ss_pred             CCEeeeec----ccceeecccccccccccccccccccccc----------------------------------------
Confidence            88999987    4679999999999999999876633211                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                           ..+..  ....+.+....++++ .++.+.+|+..........     ..+..|...+..
T Consensus        92 ---------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~  143 (293)
T d1p22a2          92 ---------------------IHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNV  143 (293)
T ss_dssp             ---------------------CCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSSCEEE
T ss_pred             ---------------------ccccc--ccccccccccceeecccccceeEeecccccccccc-----cccccccccccc
Confidence                                 11111  223344555677777 9999999998844432222     125678888888


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~  347 (497)
                      +.+.+   ..+++++.|+.|++||+++++..    ..+..             +...+..+.+  ++.+++++ .|+.|+
T Consensus       144 ~~~~~---~~~~~~s~d~~i~~~d~~~~~~~----~~~~~-------------~~~~v~~~~~--~~~~l~~~~~dg~i~  201 (293)
T d1p22a2         144 VDFDD---KYIVSASGDRTIKVWNTSTCEFV----RTLNG-------------HKRGIACLQY--RDRLVVSGSSDNTIR  201 (293)
T ss_dssp             EEEET---TEEEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred             ceecc---cccccccCCCceeeecCCCCcEE----EEEcc-------------cccccccccC--CCCeEEEecCCCEEE
Confidence            88775   45888999999999999987654    33333             2345555554  46788887 469999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC--------CcceEEE
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--------SAGGITV  419 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~--------~~~~~~~  419 (497)
                      +||+++ .+.+..+.++...                 ...+++++.+|++|+.||.|++||+...        ......+
T Consensus       202 i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (293)
T d1p22a2         202 LWDIEC-GACLRVLEGHEEL-----------------VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL  263 (293)
T ss_dssp             EEETTT-CCEEEEECCCSSC-----------------EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             EEeccc-ceeeeeeccccee-----------------eeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe
Confidence            999986 7888888777764                 2567788999999999999999997542        2345788


Q ss_pred             eccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          420 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .+|.++|+++++.+    ..     |++|+.|+. ++|
T Consensus       264 ~~H~~~V~~v~~d~----~~-----l~s~s~Dg~i~iW  292 (293)
T d1p22a2         264 VEHSGRVFRLQFDE----FQ-----IVSSSHDDTILIW  292 (293)
T ss_dssp             CCCSSCCCCEEECS----SC-----EEECCSSSEEEEE
T ss_pred             cCCCCCEEEEEEcC----CE-----EEEEecCCEEEEe
Confidence            99999999999843    34     899999998 998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-29  Score=232.70  Aligned_cols=302  Identities=8%  Similarity=-0.027  Sum_probs=197.4

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .|.+.|++|+|+|+|++||+|+.||+|+|||+.++..                   ... +....+|.            
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-------------------~~~-~~~~~~h~------------   56 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------NVD-LLQSLRYK------------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------EEE-EEEEEECS------------
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc-------------------ceE-EEEecCCC------------
Confidence            5899999999999999999999999999999987542                   111 22333677            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ++|.+++|+| +++.+|++|+.|+.|++|++..+......                                        
T Consensus        57 ~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~~~~~~~~~----------------------------------------   95 (342)
T d1yfqa_          57 HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQAL----------------------------------------   95 (342)
T ss_dssp             SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEEC----------------------------------------
T ss_pred             CCEEEEEEeC-CCCCEEEEcccccceeeeecccccccccc----------------------------------------
Confidence            8999999964 34568999999999999999876532211                                        


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                          ...+........+.++...++++ .++.+++||++............  ...........
T Consensus        96 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~  153 (342)
T d1yfqa_          96 --------------------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTKVKNKI  153 (342)
T ss_dssp             --------------------BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSSSCCCE
T ss_pred             --------------------cccccccccccccccccccccccccccccceeeccccccceeeeccc--ccccccceeee
Confidence                                02223333445556677788888 99999999987433222211000  11122334456


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe-eCCCEEEEEe-cCeE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD-YMNL  346 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~-~~~i  346 (497)
                      ..+.+.+ ..+++++.|+.|++||++..+.........              .+...+.+..+. +++..+++++ +|.+
T Consensus       154 ~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~  218 (342)
T d1yfqa_         154 FTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEES--------------GLKYQIRDVALLPKEQEGYACSSIDGRV  218 (342)
T ss_dssp             EEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEEC--------------SCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred             eeeeccC-CceeeecCCCcEEEEecccCcccceeeeec--------------ccccceeeeEeecCCCCEEEeecCCCeE
Confidence            6677777 899999999999999998765432111111              112334454444 4567777775 5999


Q ss_pred             EEEecCCCCcee-----eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          347 KLWDIRMDSTPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       347 ~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                      .+|+........     ..+..+...      .........+++++|+|++++||+|+.||.|++||+++++.+ ..+..
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l-~~~~~  291 (342)
T d1yfqa_         219 AVEFFDDQGDDYNSSKRFAFRCHRLN------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI-KNFAK  291 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCC------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE-EECCC
T ss_pred             EEEEecCCcceeeccccceeeeeeec------cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE-EEecC
Confidence            999986422111     111111110      001122334578999999999999999999999999988554 44432


Q ss_pred             cCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          422 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       422 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      + .+...+++++  ++..     +++++.|+. ++|
T Consensus       292 ~-~~~~~~~~s~--~~~~-----l~~a~sdd~~~~~  319 (342)
T d1yfqa_         292 F-NEDSVVKIAC--SDNI-----LCLATSDDTFKTN  319 (342)
T ss_dssp             C-SSSEEEEEEE--CSSE-----EEEEEECTHHHHC
T ss_pred             C-CCCEEEEEEe--CCCE-----EEEEEcCCcEEEe
Confidence            2 2333455666  4444     777777777 777

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=229.13  Aligned_cols=294  Identities=12%  Similarity=0.130  Sum_probs=213.7

Q ss_pred             cccccccCcccccccccccccce-eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKI-NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  168 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i-~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (497)
                      ..+|+||.            ..| ++++|    ++++|++|+.|++|++||+.+++.                       
T Consensus         5 ~~tL~GH~------------~~vitc~~~----~~~~l~tgs~Dg~i~vWd~~~~~~-----------------------   45 (355)
T d1nexb2           5 RTTLRGHM------------TSVITCLQF----EDNYVITGADDKMIRVYDSINKKF-----------------------   45 (355)
T ss_dssp             EEEEECCS------------SSCEEEEEE----ETTEEEEEETTTEEEEEETTTTEE-----------------------
T ss_pred             cEEECCcC------------CCcEEEEEE----CCCEEEEEeCCCeEEEEECCCCcE-----------------------
Confidence            46689998            654 66665    467999999999999999987663                       


Q ss_pred             ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce
Q 010933          169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  247 (497)
                                                           +.++ .+|...|++++|+|++ .|++| .|+.|++|+.. ...
T Consensus        46 -------------------------------------~~~l-~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~-~~~   85 (355)
T d1nexb2          46 -------------------------------------LLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-KGC   85 (355)
T ss_dssp             -------------------------------------EEEE-ECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT-TTE
T ss_pred             -------------------------------------EEEE-ECCCCCEEEEEEcCCC-EEEEEeccccccccccc-ccc
Confidence                                                 2333 7899999999999865 78888 99999999998 444


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccccee----ccccc--ccCCcccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL----RDAAE--SHGSKSFFTE  321 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~  321 (497)
                      .....     ....+........+.+++ .++++++.|+.|++||+++...........    .....  ..........
T Consensus        86 ~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          86 CTHVF-----EGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             EEEEE-----CCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ccccc-----cccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            43331     123344555667788888 899999999999999998765332110000    00000  0000001112


Q ss_pred             ccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          322 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       322 ~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      |..  ....+.+++++++++. ++.|++||+++ ++.+....++....               .++.|+|++.++++++.
T Consensus       160 ~~~--~v~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~  221 (355)
T d1nexb2         160 HMA--SVRTVSGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRI---------------YSTIYDHERKRCISASM  221 (355)
T ss_dssp             CSS--CEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEETTTTEEEEEET
T ss_pred             ccc--cccccccccceeeeecccceeeeeeccc-ccceeeeecccccc---------------ccccccccceeeecccc
Confidence            222  2345667889998885 59999999986 77777777666543               58999999999999999


Q ss_pred             CCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEE-EEe
Q 010933          401 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHL-AWH  478 (497)
Q Consensus       401 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l-~~~  478 (497)
                      |+.|++|++.++.. ...+++|..+|.++.+++    ..     +++|+.|+. ++|...........|...+..+ .++
T Consensus       222 d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~~~----~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  291 (355)
T d1nexb2         222 DTTIRIWDLENGEL-MYTLQGHTALVGLLRLSD----KF-----LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY  291 (355)
T ss_dssp             TSCEEEEETTTCCE-EEEECCCSSCCCEEEECS----SE-----EEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEE
T ss_pred             cceEEeeecccccc-cccccccccccccccccc----ce-----eeeeecccccccccccccceecccccCCceEEEEEc
Confidence            99999999998855 488999999999999865    23     899999999 9996655555555666666665 567


Q ss_pred             cCCCEEEEEeCCceEEEe
Q 010933          479 PTTNLIACANGNSLFFHY  496 (497)
Q Consensus       479 p~~~~la~~~~~~~~i~~  496 (497)
                      +++.+|++|+++.+++|+
T Consensus       292 ~~~~~l~~g~d~~i~vwd  309 (355)
T d1nexb2         292 VSDNILVSGSENQFNIYN  309 (355)
T ss_dssp             ECSSEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEeCCEEEEEE
Confidence            888999999899999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=228.97  Aligned_cols=271  Identities=10%  Similarity=0.037  Sum_probs=202.2

Q ss_pred             cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933           88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  167 (497)
Q Consensus        88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (497)
                      +++++++||.            ++|++++|  ++    |++|+.||+|++||+.++.                       
T Consensus         4 ~~i~~l~gH~------------~~I~~l~~--s~----l~sgs~Dg~v~~Wd~~~~~-----------------------   42 (287)
T d1pgua2           4 EVLKTISGHN------------KGITALTV--NP----LISGSYDGRIMEWSSSSMH-----------------------   42 (287)
T ss_dssp             EEEEEECCCS------------SCEEEEET--TT----TEEEETTSCEEETTTTEEE-----------------------
T ss_pred             ceeEEECCCC------------CceEEEEE--Cc----EEEEeCCCeEEEEECCCCC-----------------------
Confidence            5678899999            99999999  44    8999999999999987644                       


Q ss_pred             CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933          168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  246 (497)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  246 (497)
                                                                 .+|...|.++++++++. ++++ .|+++++|++.. .
T Consensus        43 -------------------------------------------~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~-~   77 (287)
T d1pgua2          43 -------------------------------------------QDHSNLIVSLDNSKAQE-YSSISWDDTLKVNGITK-H   77 (287)
T ss_dssp             -------------------------------------------CCCCSCEEEEECCSTTC-CEEEETTTEEEETTEEE-E
T ss_pred             -------------------------------------------CCCCCCEEEEEecCCCe-EEEEeeccccccccccc-c
Confidence                                                       58889999999997765 5666 999999999772 1


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      +              ....+..+++++++ ..++ .+.++.+.+|+..+++..    +.+..                ..
T Consensus        78 ~--------------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~----~~~~~----------------~~  121 (287)
T d1pgua2          78 E--------------FGSQPKVASANNDG-FTAV-LTNDDDLLILQSFTGDII----KSVRL----------------NS  121 (287)
T ss_dssp             E--------------CSSCEEEEEECSSS-EEEE-EETTSEEEEEETTTCCEE----EEEEC----------------SS
T ss_pred             c--------------cccceeeeeeccCC-ceEE-Eeecccceeeeccceeee----eeccc----------------cc
Confidence            1              23456788889887 5554 556777899998887644    33322                23


Q ss_pred             cEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933          327 SDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  403 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  403 (497)
                      ...++++++..++++. + +.+++|++.. .+....+. .+...               +++++|+|++++|++|+.||.
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~g~~dg~  185 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRAK---------------PSYISISPSETYIAAGDVMGK  185 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSSC---------------EEEEEECTTSSEEEEEETTSC
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccc-cceeeeeeeccCCc---------------eeEEEeccCcccccccccccc
Confidence            4466788888888764 4 6899999874 44333332 23332               268999999999999999999


Q ss_pred             EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcc---cccccceeEeeccCc-eecCC---CCCcccccccCCCeEEEE
Q 010933          404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR---RSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLA  476 (497)
Q Consensus       404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~l~~~~~d~~-~iw~~---~~~~~~~~~~~~~i~~l~  476 (497)
                      |++||+.++......+.+|..+|.+++|+|.....   ......+++|+.|+. ++|..   ........+|...|++++
T Consensus       186 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~  265 (287)
T d1pgua2         186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL  265 (287)
T ss_dssp             EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE
T ss_pred             ccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE
Confidence            99999998866555678999999999998842110   011223999999999 99933   334445668999999999


Q ss_pred             EecCCCEEEEEeCCceEEEe
Q 010933          477 WHPTTNLIACANGNSLFFHY  496 (497)
Q Consensus       477 ~~p~~~~la~~~~~~~~i~~  496 (497)
                      |+|++.++.++.++.+++|+
T Consensus       266 ~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         266 WETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             EEETTEEEEEETTSCEEEEE
T ss_pred             ECCCCEEEEEECCCeEEEEE
Confidence            99998655444567799997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.4e-30  Score=231.04  Aligned_cols=260  Identities=15%  Similarity=0.110  Sum_probs=199.8

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      +|.++|++++|+|    |++|+.||+|++||+.++                            .++|.            
T Consensus        11 gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----------------------------~~~h~------------   46 (287)
T d1pgua2          11 GHNKGITALTVNP----LISGSYDGRIMEWSSSSM----------------------------HQDHS------------   46 (287)
T ss_dssp             CCSSCEEEEETTT----TEEEETTSCEEETTTTEE----------------------------ECCCC------------
T ss_pred             CCCCceEEEEECc----EEEEeCCCeEEEEECCCC----------------------------CCCCC------------
Confidence            5999999999998    999999999999997653                            35788            


Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|.++++  ++ +..+++++.|+++++|++...+                                             
T Consensus        47 ~~V~~~~~--~~-~~~~~s~s~D~~v~~w~~~~~~---------------------------------------------   78 (287)
T d1pgua2          47 NLIVSLDN--SK-AQEYSSISWDDTLKVNGITKHE---------------------------------------------   78 (287)
T ss_dssp             SCEEEEEC--CS-TTCCEEEETTTEEEETTEEEEE---------------------------------------------
T ss_pred             CCEEEEEe--cC-CCeEEEEeeccccccccccccc---------------------------------------------
Confidence            88999998  33 4678999999999999976433                                             


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                             ....+..+++++++..++++.++.+.+|+.. .+.....+       . +...  ..
T Consensus        79 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~-~~~~--~~  124 (287)
T d1pgua2          79 -----------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSF-TGDIIKSV-------R-LNSP--GS  124 (287)
T ss_dssp             -----------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETT-TCCEEEEE-------E-CSSC--EE
T ss_pred             -----------------------cccceeeeeeccCCceEEEeecccceeeecc-ceeeeeec-------c-ccce--ee
Confidence                                   1234667888889888887877788899988 44444442       1 2223  34


Q ss_pred             EEeCCCCcEEEEEeCC-CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933          270 EFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  347 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~  347 (497)
                      ++++++ ..+++++.+ +.+++|++...+..    ..+.            ..|...+++++|+|++.+|++|+ +|.|+
T Consensus       125 ~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~----~~~~------------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  187 (287)
T d1pgua2         125 AVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVS----FDLK------------TPLRAKPSYISISPSETYIAAGDVMGKIL  187 (287)
T ss_dssp             EEEECS-SEEEEEETTTSCEEEEETTEEEEE----EECS------------SCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeccC-cceeeeccccceeeeeecccccee----eeee------------eccCCceeEEEeccCcccccccccccccc
Confidence            567777 677777776 57999998765432    1111            12346799999999999999986 59999


Q ss_pred             EEecCCCCce-eeeeeecccccccccccCCCCCccceeEEEEcCC----------CCEEEEEeCCCcEEEEEcCCCCcce
Q 010933          348 LWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----------GLHFATGSYSNLLRIFSHGVGSAGG  416 (497)
Q Consensus       348 lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~~~l~s~~~dg~i~vw~~~~~~~~~  416 (497)
                      +||+.. +.. ...+..|...+               .+++|+|+          +.+|++|+.|+.|++||++++....
T Consensus       188 i~d~~~-~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~  251 (287)
T d1pgua2         188 LYDLQS-REVKTSRWAFRTSKI---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  251 (287)
T ss_dssp             EEETTT-TEEEECCSCCCSSCE---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             ceeecc-ccccccccccccccc---------------ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEE
Confidence            999986 443 34566777654               67888764          5689999999999999998876777


Q ss_pred             EEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          417 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       417 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      ..+.+|..+|++++|++  ++ .     +++++.|+. ++|
T Consensus       252 ~~~~~h~~~V~~v~~~~--~~-~-----l~s~g~D~~v~iW  284 (287)
T d1pgua2         252 KALNAHKDGVNNLLWET--PS-T-----LVSSGADACIKRW  284 (287)
T ss_dssp             EETTSSTTCEEEEEEEE--TT-E-----EEEEETTSCEEEE
T ss_pred             EEeCCCCCCeEEEEECC--CC-E-----EEEEECCCeEEEE
Confidence            88889999999999998  33 2     788999999 999

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1e-28  Score=224.82  Aligned_cols=241  Identities=15%  Similarity=0.150  Sum_probs=189.4

Q ss_pred             eeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933          205 CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  283 (497)
Q Consensus       205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  283 (497)
                      ..+++ .||...|++++|+|++++|++| .|+.|++||++ .++....+      ...|...|.+++|+|++ . +++++
T Consensus         4 ~~~~~-~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~-~~~~~~~~------~~~h~~~v~~v~~~~~g-~-~~~~~   73 (299)
T d1nr0a2           4 IDQVR-YGHNKAITALSSSADGKTLFSADAEGHINSWDIS-TGISNRVF------PDVHATMITGIKTTSKG-D-LFTVS   73 (299)
T ss_dssp             EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEECS------SCSCSSCEEEEEECTTS-C-EEEEE
T ss_pred             cceEc-CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEE------cCCCCCcEEEEEeeccc-e-eeccc
Confidence            34444 8999999999999999999999 99999999998 45555441      35789999999999998 5 56677


Q ss_pred             CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeee
Q 010933          284 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI  363 (497)
Q Consensus       284 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~  363 (497)
                      .|+.+++|+......... ...             ...+...+.+++|+|++++++++.++.+++|+..   +.......
T Consensus        74 ~d~~v~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~---~~~~~~~~  136 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSS-KAV-------------ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPIS  136 (299)
T ss_dssp             TTTEEEEECSSSSSSCTT-SCC-------------EEECSSCEEEEEECTTSSCEEEEESSEEEEEETT---EEEEEECS
T ss_pred             ceeeEEEeccCCcccccc-ccc-------------cccccccccccccccccccccccccccccccccc---cccccccc
Confidence            899999999876432110 011             1233467889999999999999888999999953   33333322


Q ss_pred             cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccccc
Q 010933          364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  443 (497)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  443 (497)
                      +..                 .+++|+|++++|++|+.||.|++||+++++........|..+|.++++++  ++.+    
T Consensus       137 ~~~-----------------~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~----  193 (299)
T d1nr0a2         137 YNS-----------------SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN--NGAF----  193 (299)
T ss_dssp             SCE-----------------EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT--TSSE----
T ss_pred             ccc-----------------cccccccccccccccccccccccccccccccccccccccccccccccccc--cccc----
Confidence            222                 57999999999999999999999999887655556778999999999998  6666    


Q ss_pred             ceeEeeccCc-eecCC--CC---CcccccccCCCeEEEEEecCCCEEEEEeC-CceEEEe
Q 010933          444 NLTRGLYRQA-HENSS--SG---HHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY  496 (497)
Q Consensus       444 ~l~~~~~d~~-~iw~~--~~---~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i~~  496 (497)
                       +++++.++. .+|..  +.   .......|..+|++++|+|++++||+|+. +.+++|+
T Consensus       194 -l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         194 -LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             -EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEE
Confidence             899999999 99932  21   22345568899999999999999999985 5599996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-26  Score=206.21  Aligned_cols=263  Identities=13%  Similarity=0.220  Sum_probs=191.5

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      ..|+|++|    ++++|++|+.||+|+|||+.++++                                            
T Consensus        16 ~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~--------------------------------------------   47 (293)
T d1p22a2          16 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLEC--------------------------------------------   47 (293)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCE--------------------------------------------
T ss_pred             CCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcE--------------------------------------------
Confidence            78998765    678999999999999999987663                                            


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                                      ++++ .+|...|.+++|  ++++|++| .|+.|++|++.........        ..+..  ..
T Consensus        48 ----------------~~~l-~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~--------~~~~~--~~   98 (293)
T d1p22a2          48 ----------------KRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL--------IHHCE--AV   98 (293)
T ss_dssp             ----------------EEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE--------CCCCS--CE
T ss_pred             ----------------EEEE-ecCCCCEeeeec--ccceeecccccccccccccccccccccc--------ccccc--cc
Confidence                            3333 789999999887  56799999 9999999999944333322        22222  23


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933          269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  347 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~  347 (497)
                      ..+.+.. ..++++..++.+++||........    ....          +..|...+..+.+.  ...++++ .|+.|+
T Consensus        99 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~v~~~~~~--~~~~~~~s~d~~i~  161 (293)
T d1p22a2          99 LHLRFNN-GMMVTCSKDRSIAVWDMASPTDIT----LRRV----------LVGHRAAVNVVDFD--DKYIVSASGDRTIK  161 (293)
T ss_dssp             EEEECCT-TEEEEEETTSCEEEEECSSSSCCE----EEEE----------ECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             ccccccc-cceeecccccceeEeecccccccc----cccc----------ccccccccccceec--ccccccccCCCcee
Confidence            3444555 789999999999999998765321    1111          12344566666654  4555655 569999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  427 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  427 (497)
                      +||+++ ++++..+.++...+                 ..+++++.+|++++.||.|++||+++...+ ....+|...+.
T Consensus       162 ~~d~~~-~~~~~~~~~~~~~v-----------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~  222 (293)
T d1p22a2         162 VWNTST-CEFVRTLNGHKRGI-----------------ACLQYRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVR  222 (293)
T ss_dssp             EEETTT-CCEEEEEECCSSCE-----------------EEEEEETTEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEE
T ss_pred             eecCCC-CcEEEEEccccccc-----------------ccccCCCCeEEEecCCCEEEEEecccceee-eeecccceeee
Confidence            999986 88888888877643                 334445679999999999999999987554 77788888776


Q ss_pred             eeEeecCCCcccccccceeEeeccCc-eecCC-----------CCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEE
Q 010933          428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSS-----------SGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF  494 (497)
Q Consensus       428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~-----------~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i  494 (497)
                      ....    +...     |++|+.|+. ++|..           ......+.+|...|++++|+  +.+||+|+.| .+++
T Consensus       223 ~~~~----~~~~-----l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~i  291 (293)
T d1p22a2         223 CIRF----DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI  291 (293)
T ss_dssp             EEEC----CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEE
T ss_pred             eccc----cceE-----EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEE
Confidence            5433    3444     899999999 99921           11223456799999999994  6789999855 5999


Q ss_pred             Ee
Q 010933          495 HY  496 (497)
Q Consensus       495 ~~  496 (497)
                      |+
T Consensus       292 WD  293 (293)
T d1p22a2         292 WD  293 (293)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=6.3e-28  Score=225.37  Aligned_cols=310  Identities=12%  Similarity=0.066  Sum_probs=219.0

Q ss_pred             EEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  115 (497)
Q Consensus        37 ~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l  115 (497)
                      .-.||| ||+++|+++ +|.|++||.+++..                       .+ + +|.            ..|.++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~-----------------------~~-~-~~~------------~~v~~~   48 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-----------------------LK-V-PEP------------LRIRYV   48 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBE-----------------------EE-C-SCC------------SCEEEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcE-----------------------EE-c-cCC------------CCEEEE
Confidence            467999 999999987 57999999987642                       22 2 577            889999


Q ss_pred             EEEecCCCCEEEEEeCC--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          116 RWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       116 ~~~~s~~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      +|  +|||++|++++.+  ..|++||+.+++...+                                             
T Consensus        49 ~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~---------------------------------------------   81 (360)
T d1k32a3          49 RR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEKF---------------------------------------------   81 (360)
T ss_dssp             EE--CSSSEEEEEEEETTEEEEEEEETTTCCEEEC---------------------------------------------
T ss_pred             EE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEEe---------------------------------------------
Confidence            99  7899999887655  3799999988764432                                             


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  272 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  272 (497)
                                       ..|...+.+++|+|+|+.|+++ .++.+++|+.. ..+....       +..|...+.+++|+
T Consensus        82 -----------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~s  136 (360)
T d1k32a3          82 -----------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVI-------ERSREAMITDFTIS  136 (360)
T ss_dssp             -----------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEE-------EECSSSCCCCEEEC
T ss_pred             -----------------eCCCceEEeeeecccccccceecccccccccccc-ccceeee-------eecccccccchhhc
Confidence                             5788899999999999999999 99999999998 5555544       56678889999999


Q ss_pred             CCCCcEEEEEe----------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933          273 PIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  342 (497)
Q Consensus       273 ~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  342 (497)
                      |+| ++|+.+.          .++.+++||+.+++..    ....              +...+..++|+|+|++|++++
T Consensus       137 pdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~----~~~~--------------~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         137 DNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF----AATT--------------ENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             TTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE----ECSC--------------SSSBEEEEEECTTSCEEEEEE
T ss_pred             cce-eeeeeeccccccceeeccccceeeeccccCcee----eecc--------------cccccccccccCCCCEEEEEe
Confidence            999 8888653          3457999999886532    1111              235678899999999999876


Q ss_pred             c-CeEEEEecCCCCce-------eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc---EEEEEcCC
Q 010933          343 Y-MNLKLWDIRMDSTP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGV  411 (497)
Q Consensus       343 ~-~~i~lwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~---i~vw~~~~  411 (497)
                      + +.+++|+... ...       ...+..+....               ..+.|+++++.++++..+..   .++|.+..
T Consensus       198 ~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T d1k32a3         198 YRSLDPSPDRVV-LNFSFEVVSKPFVIPLIPGSP---------------NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV  261 (360)
T ss_dssp             SCCCCCEECSSS-SCEECCSCBEEEEEESSTTCC---------------CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred             CCCceEcccccc-cceeeccccceEEEecccCcc---------------ccceECCCcCcccccceeecccccceeeccc
Confidence            5 9999999764 221       11122222211               24677888877776654322   23444332


Q ss_pred             CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-
Q 010933          412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-  489 (497)
Q Consensus       412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-  489 (497)
                      .......+..+.+.+..+.+......    ...+++++.++. .+|.....  ....+...|.+++|+|||++|++++. 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~v~~~~~SpDG~~l~~~~~D  335 (360)
T d1k32a3         262 DPGDYRMIIPLESSILIYSVPVHGEF----AAYYQGAPEKGVLLKYDVKTR--KVTEVKNNLTDLRLSADRKTVMVRKDD  335 (360)
T ss_dssp             CCBCEEEEEECSSEEEEEECCCCCSH----HHHHHCCCCCEEEEEEETTTC--CEEEEEEEEEEEEECTTSCEEEEEETT
T ss_pred             CcCceeEeeecCCCceEEEEEecCCC----eeEEEecCCCCEEEEEECCCC--eEEEecCCcCEEEECCCCCEEEEEECC
Confidence            22233556666666655555442111    223677778887 88943322  23455667999999999999999995 


Q ss_pred             CceEEEeC
Q 010933          490 NSLFFHYA  497 (497)
Q Consensus       490 ~~~~i~~~  497 (497)
                      +.+++|.+
T Consensus       336 g~i~v~d~  343 (360)
T d1k32a3         336 GKIYTFPL  343 (360)
T ss_dssp             SCEEEEES
T ss_pred             CeEEEEEC
Confidence            55999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-26  Score=218.52  Aligned_cols=250  Identities=13%  Similarity=0.167  Sum_probs=165.2

Q ss_pred             CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecC-
Q 010933           43 TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-  121 (497)
Q Consensus        43 ~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~-  121 (497)
                      ++.++++++.||.|++|++......                       ..+..+.  ...+........+..++|.+.. 
T Consensus        78 ~~~~~~s~~~dg~v~~w~~~~~~~~-----------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  132 (393)
T d1sq9a_          78 ELCLVATTSFSGDLLFYRITREDET-----------------------KKVIFEK--LDLLDSDMKKHSFWALKWGASND  132 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTT-----------------------CCEEEEE--ECCSCTTGGGSCEEEEEEECCC-
T ss_pred             CCcEEEEEeCCCcEEEEEccCCCce-----------------------eeeeccc--cceeeeccCCCceEEEEEecCCC
Confidence            3467889999999999998765320                       0000000  0000111112568888886432 


Q ss_pred             --CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecC
Q 010933          122 --NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  199 (497)
Q Consensus       122 --~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (497)
                        .+.++++++.|+.+++|++..............                                  .....+..   
T Consensus       133 ~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~---  175 (393)
T d1sq9a_         133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW----------------------------------SPTLELQG---  175 (393)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC----------------------------------CCEEEEEE---
T ss_pred             cccccEEEEEcCCCcEEEEEeecCCcccceeeeee----------------------------------ccceeccc---
Confidence              256889999999999999864321110000000                                  00011100   


Q ss_pred             CccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcE
Q 010933          200 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  278 (497)
Q Consensus       200 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  278 (497)
                           .... ...+...+.+++|+|++ +|++| .|+.|++||++ .++....+... ..+.+|..+|.+++|+|+| ++
T Consensus       176 -----~~~~-~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~-~~~~~~~~~~~-~~l~~h~~~V~~l~~spdg-~~  245 (393)
T d1sq9a_         176 -----TVES-PMTPSQFATSVDISERG-LIATGFNNGTVQISELS-TLRPLYNFESQ-HSMINNSNSIRSVKFSPQG-SL  245 (393)
T ss_dssp             -----EECC-SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-TTEEEEEEECC-C---CCCCCEEEEEECSST-TE
T ss_pred             -----ceec-ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec-ccccccccccc-cccccccceEEEccccccc-ce
Confidence                 1111 14566778999999998 88899 99999999999 44444433222 3467899999999999999 99


Q ss_pred             EEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCC
Q 010933          279 LAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD  354 (497)
Q Consensus       279 l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~  354 (497)
                      |++|+.|+   .|++||+++++.+    ..+............+.+|...|++++|+|++++|++++ |+.|++||+++ 
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~----~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~-  320 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-  320 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-
T ss_pred             eeeecCCCCcceeeecccccceee----eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC-
Confidence            99999886   5999999998765    344332233333445678999999999999999999986 59999999997 


Q ss_pred             Cceeeeeeecccccc
Q 010933          355 STPVATFKIHEHLRP  369 (497)
Q Consensus       355 ~~~~~~~~~~~~~~~  369 (497)
                      ++++.++++|...+.
T Consensus       321 g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         321 KERITTLNMHCDDIE  335 (393)
T ss_dssp             TEEEEEEECCGGGCS
T ss_pred             CCEEEEECCcCCccc
Confidence            899999999987664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-25  Score=203.69  Aligned_cols=272  Identities=17%  Similarity=0.256  Sum_probs=200.7

Q ss_pred             ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933           87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  166 (497)
Q Consensus        87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (497)
                      ++..+.++||+            +.|.+ ++  +++|++|++|+.||+|++||+.++++.                    
T Consensus         6 ~~~~~~l~GH~------------~~V~s-~~--~~~g~~l~sgs~Dg~i~vWd~~~~~~~--------------------   50 (342)
T d2ovrb2           6 LKSPKVLKGHD------------DHVIT-CL--QFCGNRIVSGSDDNTLKVWSAVTGKCL--------------------   50 (342)
T ss_dssp             CCCCEEEECST------------TSCEE-EE--EEETTEEEEEETTSCEEEEETTTCCEE--------------------
T ss_pred             CCcCEEECCcC------------CceEE-EE--EECCCEEEEEeCCCeEEEEECCCCCEE--------------------
Confidence            45577899999            77754 24  235789999999999999999877633                    


Q ss_pred             cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933          167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  245 (497)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  245 (497)
                                                              +++ .+|...|.+++|+|+  .|++| .|+.+++|+... 
T Consensus        51 ----------------------------------------~~~-~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~-   86 (342)
T d2ovrb2          51 ----------------------------------------RTL-VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET-   86 (342)
T ss_dssp             ----------------------------------------EEC-CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT-
T ss_pred             ----------------------------------------EEE-eCCCCCEEEEEeCCC--ccccceeccccccccccc-
Confidence                                                    333 789999999999874  88888 999999999983 


Q ss_pred             ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          246 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      ......       ...+...+......+   ..++.+..|+.+.+|+.++++..    ..+..               ..
T Consensus        87 ~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~----~~~~~---------------~~  137 (342)
T d2ovrb2          87 GECIHT-------LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL----HVLMG---------------HV  137 (342)
T ss_dssp             TEEEEE-------ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE----EEEEC---------------CS
T ss_pred             ccceec-------ccccceeEeeeeccc---ccccccccceeEEEeecccccce----eeeec---------------cc
Confidence            333322       334445555555444   56888999999999999987643    22222               12


Q ss_pred             ccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933          326 ISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  404 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i  404 (497)
                      .......+....++.+ .++.|++||... .+.+..+.+|...                 ...+++++.+|++|+.||.|
T Consensus       138 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~l~s~~~dg~i  199 (342)
T d2ovrb2         138 AAVRCVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNR-----------------VYSLQFDGIHVVSGSLDTSI  199 (342)
T ss_dssp             SCEEEEEECSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSC-----------------EEEEEECSSEEEEEETTSCE
T ss_pred             ccceeeccccceeeeecCCCeEEEeeccc-ceeeEEEcCcccc-----------------cccccCCCCEEEEEeCCCeE
Confidence            2334445566666666 459999999986 7888888888763                 46777789999999999999


Q ss_pred             EEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC--CCccc---ccccCCCeEEEEEe
Q 010933          405 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHEL---SYNLSSKLLHLAWH  478 (497)
Q Consensus       405 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~--~~~~~---~~~~~~~i~~l~~~  478 (497)
                      ++||++.++. ...+.+|...+..+.+.+    .+     +++|+.|+. ++|...  +....   ...|...+.+++++
T Consensus       200 ~~~d~~~~~~-~~~~~~~~~~v~~~~~~~----~~-----l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         200 RVWDVETGNC-IHTLTGHQSLTSGMELKD----NI-----LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN  269 (342)
T ss_dssp             EEEETTTCCE-EEEECCCCSCEEEEEEET----TE-----EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             EEeeccccee-eeEecccccceeEEecCC----CE-----EEEEcCCCEEEEEecccccccccccccceeeeceeecccC
Confidence            9999998855 488999999998888765    23     899999999 999332  22222   23455677666664


Q ss_pred             cCCCEEEEEeCC-ceEEEe
Q 010933          479 PTTNLIACANGN-SLFFHY  496 (497)
Q Consensus       479 p~~~~la~~~~~-~~~i~~  496 (497)
                        ++++++|+.| .+++|+
T Consensus       270 --~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         270 --KNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             --SSEEEEEETTSEEEEEE
T ss_pred             --CCeeEEEcCCCEEEEEE
Confidence              6789999855 599997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.1e-25  Score=210.01  Aligned_cols=269  Identities=12%  Similarity=0.050  Sum_probs=187.0

Q ss_pred             CcccCCcceEEEEEcCCCCEEEEeecCC--eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           27 EELQDVDIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      ..+.|...|++++|||||++|++++.+.  .|++||.++++                        ...+..|.       
T Consensus        37 ~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~------------------------~~~~~~~~-------   85 (360)
T d1k32a3          37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK------------------------AEKFEENL-------   85 (360)
T ss_dssp             EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC------------------------EEECCCCC-------
T ss_pred             EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc------------------------EEEeeCCC-------
Confidence            3457999999999999999998877554  79999998865                        34466777       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                           ..|.+++|  +|++++|++++.++.+++|++.+++....                                    
T Consensus        86 -----~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~------------------------------------  122 (360)
T d1k32a3          86 -----GNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVI------------------------------------  122 (360)
T ss_dssp             -----CSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE------------------------------------
T ss_pred             -----ceEEeeee--cccccccceeccccccccccccccceeee------------------------------------
Confidence                 88999999  78999999999999999999987663321                                    


Q ss_pred             ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-----------cCCeEEEEeCccCceeeEEee
Q 010933          185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVD  253 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----------~d~~i~iwd~~~~~~~~~~~~  253 (497)
                                               +..|...+.+++|+|+|+.|+.+           .++.+++|++. .++...   
T Consensus       123 -------------------------~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-~~~~~~---  173 (360)
T d1k32a3         123 -------------------------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRKIFA---  173 (360)
T ss_dssp             -------------------------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTEEEE---
T ss_pred             -------------------------eecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-cCceee---
Confidence                                     15677788899999999999853           34578999998 554443   


Q ss_pred             cCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc---ceecccccccCC---------------
Q 010933          254 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA---RILRDAAESHGS---------------  315 (497)
Q Consensus       254 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~---------------  315 (497)
                           +..+...+..++|+|+| +.|++++.++.+++||...........   .....+......               
T Consensus       174 -----~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  247 (360)
T d1k32a3         174 -----ATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY  247 (360)
T ss_dssp             -----CSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred             -----ecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccce
Confidence                 44567788999999999 999999999999999976543211100   000000000000               


Q ss_pred             --------ccccccccccccEEEEeeCCC-------------EEEEEe-cCeEEEEecCCCCceeeeeeecccccccccc
Q 010933          316 --------KSFFTEIIASISDIKFANDGQ-------------HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  373 (497)
Q Consensus       316 --------~~~~~~~~~~i~~~~~s~~g~-------------~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  373 (497)
                              ...+....+....+...+++.             ++++++ ++.|++||+.. ++ ...+.++   +     
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~~~~~---v-----  317 (360)
T d1k32a3         248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RK-VTEVKNN---L-----  317 (360)
T ss_dssp             CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CC-EEEEEEE---E-----
T ss_pred             eecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-Ce-EEEecCC---c-----
Confidence                    000011112222333333322             233343 37999999975 43 3333322   2     


Q ss_pred             cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          374 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       374 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                                .+++|+|||++|++++.||.|++||+++++.+ .++..+..|
T Consensus       318 ----------~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~-~~~~~d~~~  358 (360)
T d1k32a3         318 ----------TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE-RTVETDKRP  358 (360)
T ss_dssp             ----------EEEEECTTSCEEEEEETTSCEEEEESSCTTSC-EECCCCSSC
T ss_pred             ----------CEEEECCCCCEEEEEECCCeEEEEECCCCCcc-eEEEecccc
Confidence                      58999999999999999999999999988665 555544444

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-23  Score=194.01  Aligned_cols=219  Identities=9%  Similarity=0.019  Sum_probs=150.2

Q ss_pred             cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933           90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  169 (497)
Q Consensus        90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (497)
                      +...++|+            +.|++|+|  +|++++|++++.|++|+|||+..+....                      
T Consensus         4 v~~~~~h~------------d~I~~l~f--sp~~~~L~s~s~Dg~v~iwd~~~~~~~~----------------------   47 (342)
T d1yfqa_           4 VQIEQAPK------------DYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNV----------------------   47 (342)
T ss_dssp             EECSSCCS------------SCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEE----------------------
T ss_pred             EEcCCCCC------------CCEEEEEE--eCCCCEEEEEECCCeEEEEEccCCCcce----------------------
Confidence            45577888            89999999  5788999999999999999997654211                      


Q ss_pred             cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCce
Q 010933          170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQ  247 (497)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~  247 (497)
                                                        +....  .+|..+|.+++|+|+ +..|++| .|+.|++|+......
T Consensus        48 ----------------------------------~~~~~--~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          48 ----------------------------------DLLQS--LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             ----------------------------------EEEEE--EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             ----------------------------------EEEEe--cCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence                                              11111  378999999999986 4578888 999999999984443


Q ss_pred             eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933          248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  327 (497)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  327 (497)
                      ....       ...+........+.++. ..+++++.++.+++||++.+............           ........
T Consensus        92 ~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~-----------~~~~~~~~  152 (342)
T d1yfqa_          92 FQAL-------TNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-----------NNTKVKNK  152 (342)
T ss_dssp             EEEC-------BSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS-----------SSSSSCCC
T ss_pred             cccc-------ccccccccccccccccc-ccccccccccccceeeccccccceeeeccccc-----------ccccceee
Confidence            3321       23334444555566666 89999999999999999876543211111111           01123456


Q ss_pred             EEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE-cCCCCEEEEEeCCCcEE
Q 010933          328 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLR  405 (497)
Q Consensus       328 ~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i~  405 (497)
                      ...+.+++..+++++ ++.|++||+.. ...............         .   .....+ ..++..+++++.||.+.
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~s~dg~~~  219 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPL-CEDDNGTIEESGLKY---------Q---IRDVALLPKEQEGYACSSIDGRVA  219 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSC-CTTCCCEEEECSCSS---------C---EEEEEECSGGGCEEEEEETTSEEE
T ss_pred             eeeeeccCCceeeecCCCcEEEEeccc-Ccccceeeeeccccc---------c---eeeeEeecCCCCEEEeecCCCeEE
Confidence            677888888888875 59999999986 443333222211100         0   123444 45778999999999999


Q ss_pred             EEEcCCC
Q 010933          406 IFSHGVG  412 (497)
Q Consensus       406 vw~~~~~  412 (497)
                      +|+....
T Consensus       220 v~~~~~~  226 (342)
T d1yfqa_         220 VEFFDDQ  226 (342)
T ss_dssp             EEECCTT
T ss_pred             EEEecCC
Confidence            9998765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.8e-24  Score=205.37  Aligned_cols=325  Identities=8%  Similarity=0.002  Sum_probs=211.9

Q ss_pred             EcCCC--CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933           40 FDKTG--DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  117 (497)
Q Consensus        40 ~sp~g--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~  117 (497)
                      +++|.  -++++.+.||+|+|||+.+++.                       +.++..|.             .+..++|
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~-----------------------~~~l~~g~-------------~~~~vaf   69 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY-------------AVHISRM   69 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSE-----------------------EEEEECCS-------------SEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcE-----------------------EEEEeCCC-------------CeeEEEE
Confidence            44543  3567788999999999998754                       67777664             3899999


Q ss_pred             EecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933          118 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  197 (497)
Q Consensus       118 ~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (497)
                        +|||+++++++.|++|++||+.+++......                                               
T Consensus        70 --SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~-----------------------------------------------  100 (426)
T d1hzua2          70 --SASGRYLLVIGRDARIDMIDLWAKEPTKVAE-----------------------------------------------  100 (426)
T ss_dssp             --CTTSCEEEEEETTSEEEEEETTSSSCEEEEE-----------------------------------------------
T ss_pred             --CCCCCEEEEEeCCCCEEEEEccCCceeEEEE-----------------------------------------------
Confidence              7999999999999999999999877433211                                               


Q ss_pred             cCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCC----ccCCCCCCeEEEEE
Q 010933          198 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVITSAEF  271 (497)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~  271 (497)
                              ++. ..+|...+.+++|+|||+.+++ + .++.+.+||.. .......+.....    ....+......+.+
T Consensus       101 --------i~~-~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (426)
T d1hzua2         101 --------IKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA  170 (426)
T ss_dssp             --------EEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred             --------EeC-CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC-ccceeEEeeccCCCccceeecCCCceeEEEE
Confidence                    111 1356666778889999998765 4 89999999998 4555544211100    01123334455666


Q ss_pred             eCCCCcEEEE-EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEE
Q 010933          272 HPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKL  348 (497)
Q Consensus       272 ~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~l  348 (497)
                      ++++ ..++. ....+.+.+++.......    ..            ...++...+..+.|+|++++++++. + ..+.+
T Consensus       171 s~d~-~~~~~~~~~~~~i~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~  233 (426)
T d1hzua2         171 SHEH-PEFIVNVKETGKVLLVNYKDIDNL----TV------------TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV  233 (426)
T ss_dssp             CSSS-SEEEEEETTTTEEEEEECSSSSSC----EE------------EEEECCSSEEEEEECTTSCEEEEEETTCSEEEE
T ss_pred             CCCC-CEEEEecCCCCeEEEEEeccccce----ee------------EEeccCCccEeeeECCCCcEEEeeeecccceee
Confidence            6666 33333 333455555555543321    00            0112345688999999999988874 3 88999


Q ss_pred             EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EE--EEEeCCCcEEEEEcCCCC------cceEEE
Q 010933          349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HF--ATGSYSNLLRIFSHGVGS------AGGITV  419 (497)
Q Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l--~s~~~dg~i~vw~~~~~~------~~~~~~  419 (497)
                      ++... ++.+............             ....+..++. .+  ++.+.|+.+.+|+.....      .....+
T Consensus       234 ~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l  299 (426)
T d1hzua2         234 IDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL  299 (426)
T ss_dssp             EETTT-TEEEEEEECSSCCCCS-------------CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             eeccc-ccEEEEeccCCccccc-------------ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEE
Confidence            99986 7777766554433211             1233333322 22  234457888888865532      345789


Q ss_pred             eccCcceeeeEeecCCCccccccccee-------EeeccCc-eecC--CCCCccc---------ccccCCCeEEEEEecC
Q 010933          420 EAGKNENRKPILQAAPRARRSSLSNLT-------RGLYRQA-HENS--SSGHHEL---------SYNLSSKLLHLAWHPT  480 (497)
Q Consensus       420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~-------~~~~d~~-~iw~--~~~~~~~---------~~~~~~~i~~l~~~p~  480 (497)
                      .+|...+..++++|  +++.     ++       ++..++. ++|.  .++...+         ...+.+.|.+++||||
T Consensus       300 ~g~~~~v~~v~~sP--dg~~-----l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         300 QGQGGGSLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             ECSSSCCCCEECCT--TCSE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             ecCCCceeEEEcCC--CCce-----EEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence            99999999999999  6666     66       4556677 9993  3333222         2355677999999999


Q ss_pred             CCEEEEEe------CCceEEEeC
Q 010933          481 TNLIACAN------GNSLFFHYA  497 (497)
Q Consensus       481 ~~~la~~~------~~~~~i~~~  497 (497)
                      |+++++++      ++.+.||.+
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEET
T ss_pred             CCEEEEEEecCCCCCCeEEEEEC
Confidence            99875543      334888863

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=4.7e-24  Score=203.39  Aligned_cols=329  Identities=8%  Similarity=-0.020  Sum_probs=215.0

Q ss_pred             cCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEec
Q 010933           41 DKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  120 (497)
Q Consensus        41 sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s  120 (497)
                      +++.-++++.+.||+|.|||.++++.                       +..+..|.             .+..++|  +
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v-----------------------~~~~~~g~-------------~~~~v~f--S   70 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTGY-------------AVHISRL--S   70 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECSS-------------CEEEEEE--C
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcE-----------------------EEEEeCCC-------------CeeEEEE--C
Confidence            34444468888999999999998754                       66676553             3899999  7


Q ss_pred             CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCC
Q 010933          121 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  200 (497)
Q Consensus       121 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (497)
                      |||+++++++.|+.+++||+.+++.....                                                   
T Consensus        71 pDG~~l~~~s~dg~v~~~d~~t~~~~~~~---------------------------------------------------   99 (432)
T d1qksa2          71 ASGRYLFVIGRDGKVNMIDLWMKEPTTVA---------------------------------------------------   99 (432)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEE---------------------------------------------------
T ss_pred             CCCCEEEEEcCCCCEEEEEeeCCCceEEE---------------------------------------------------
Confidence            99999999999999999999876633211                                                   


Q ss_pred             ccceeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCC----ccCCCCCCeEEEEEeCC
Q 010933          201 VHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVITSAEFHPI  274 (497)
Q Consensus       201 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~  274 (497)
                          .++.. .+|...+.+..|+|||++| +++ .++.|.+||.. .++....+.....    ....+......+.++|+
T Consensus       100 ----~i~~~-~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  173 (432)
T d1qksa2         100 ----EIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY  173 (432)
T ss_dssp             ----EEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred             ----EEecC-CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc-cccceeeeccCCccccceeccCCCceeEEEECCC
Confidence                11111 3455566777889999987 556 89999999998 5555555332110    11235566788999999


Q ss_pred             CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecC
Q 010933          275 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR  352 (497)
Q Consensus       275 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~  352 (497)
                      +..++++...++.|.+||..+.+..    +....            .+......++|+|+|++++++. + +.+.++|..
T Consensus       174 g~~~~vs~~~~~~i~~~d~~~~~~~----~~~~i------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         174 RPEFIVNVKETGKILLVDYTDLNNL----KTTEI------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             SSEEEEEETTTTEEEEEETTCSSEE----EEEEE------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             CCEEEEEEccCCeEEEEEccCCCcc----eEEEE------------cccCccccceECCCCCEEEEeccccceEEEeecc
Confidence            9445566777899999998876432    22211            0124578899999999888874 3 899999987


Q ss_pred             CCCceeeeeeecccc-----c-----------ccccc-------------cCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933          353 MDSTPVATFKIHEHL-----R-----------PKLCD-------------LYNNDSIFDKFECSVSGDGLHFATGSYSNL  403 (497)
Q Consensus       353 ~~~~~~~~~~~~~~~-----~-----------~~~~~-------------~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~  403 (497)
                      . .+.+..+......     .           .....             ....+....+....++|++..+++++.++.
T Consensus       238 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~  316 (432)
T d1qksa2         238 E-GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS  316 (432)
T ss_dssp             T-TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             c-ceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCc
Confidence            5 5555444321110     0           00000             000011112345667777777777777777


Q ss_pred             EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCC
Q 010933          404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTN  482 (497)
Q Consensus       404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~  482 (497)
                      .++|...+..       .|......+++ +  +++.     +++++.|+. ++|...+. ..+.++.+.|.+++|+|||+
T Consensus       317 ~~lw~~~~~~-------~~~~~~~sv~v-p--Dg~~-----la~~s~d~~~k~w~~~~~-~~l~~~~~~v~~~~fS~DG~  380 (432)
T d1qksa2         317 QYLYVDATLN-------PEAEISGSVAV-F--DIKA-----MTGDGSDPEFKTLPIAEW-AGITEGQPRVVQGEFNKDGT  380 (432)
T ss_dssp             SEEEEECTTC-------SSHHHHTCEEE-E--EGGG-----CCCSSSCCCEEEECHHHH-HTCCSSCCEEEEEEECTTSS
T ss_pred             cceeecccCC-------CCCCeeeEEEE-E--echh-----hcccccCCceEecccccc-cccCCCCCcEEEeEECCCCC
Confidence            7777765432       12223334443 4  5665     899999998 99933211 22345677899999999999


Q ss_pred             EEEEEe------CCceEEEeC
Q 010933          483 LIACAN------GNSLFFHYA  497 (497)
Q Consensus       483 ~la~~~------~~~~~i~~~  497 (497)
                      +++++.      ++.+.||.+
T Consensus       381 ~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         381 EVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             EEEEEEECCTTSCCEEEEEET
T ss_pred             EEEEEEecCCCCCCcEEEEEC
Confidence            886654      244888863

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1e-21  Score=187.37  Aligned_cols=331  Identities=10%  Similarity=-0.013  Sum_probs=195.0

Q ss_pred             cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  109 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  109 (497)
                      .+...+..++|||||++|++++.|+.|++||+.+++..                  ....+....+|.            
T Consensus        59 ~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~------------------~~~~i~~~~~~~------------  108 (426)
T d1hzua2          59 DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT------------------KVAEIKIGIEAR------------  108 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE------------------EEEEEECCSEEE------------
T ss_pred             eCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee------------------EEEEEeCCCCCc------------
Confidence            34467899999999999999999999999999887530                  001122233454            


Q ss_pred             cceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  188 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (497)
                      ..+.+++|  +|||++++++ ..++.+++||..++.............  ......+++........++...+.... ..
T Consensus       109 ~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~s~d~~~~~~~~-~~  183 (426)
T d1hzua2         109 SVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV--DTQTYHPEPRVAAIIASHEHPEFIVNV-KE  183 (426)
T ss_dssp             EEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS--SSCCEESCCCEEEEEECSSSSEEEEEE-TT
T ss_pred             ceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc--cceeecCCCceeEEEECCCCCEEEEec-CC
Confidence            55667777  7899987665 589999999999887655433222110  000111222222222222222222211 11


Q ss_pred             CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933          189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  266 (497)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  266 (497)
                      .+.+.+++....... .+..  ..+...+..+.++|++++++++  .+..+.+++.. .++........     .+....
T Consensus       184 ~~~i~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~  254 (426)
T d1hzua2         184 TGKVLLVNYKDIDNL-TVTS--IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG-----KTPHPG  254 (426)
T ss_dssp             TTEEEEEECSSSSSC-EEEE--EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT-TTEEEEEEECS-----SCCCCS
T ss_pred             CCeEEEEEeccccce-eeEE--eccCCccEeeeECCCCcEEEeeeecccceeeeecc-cccEEEEeccC-----Cccccc
Confidence            233334433322111 1111  3667789999999999988776  78889999998 56665554322     222222


Q ss_pred             EEEEEeCCCCcEE--EEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE----
Q 010933          267 TSAEFHPIYCNLL--AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----  340 (497)
Q Consensus       267 ~~~~~~~~~~~~l--~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----  340 (497)
                      ....+...+....  +..+.|+.+.+|+..........   +       .....+.+|...+..++|+|++++|++    
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~---~-------~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA---W-------KKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB---T-------SEEEEEECSSSCCCCEECCTTCSEEEECCTT
T ss_pred             ceeeeecCCCCceEEeccCCCceEEEeecccccccccc---c-------eEeEEEecCCCceeEEEcCCCCceEEEeecC
Confidence            3333333331222  23345889999988764322110   0       111234567788999999999999995    


Q ss_pred             ---Ee-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE-E----eCCCcEEEEEcCC
Q 010933          341 ---RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-G----SYSNLLRIFSHGV  411 (497)
Q Consensus       341 ---~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~----~~dg~i~vw~~~~  411 (497)
                         +. +++|+|||+.+ ++...++..+....    .+  .+....+..++|||||++|+. +    +.+|.|+|||.++
T Consensus       325 ~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~----~~--~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         325 NPDARISQSVAVFDLKN-LDAKYQVLPIAEWA----DL--GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             CSSHHHHTCEEEEETTC-TTSCCEEECHHHHH----CC--CSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             CCCcccCCEEEEEECCC-CCcCeEEeccchhc----cc--CCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence               22 48999999987 65555443221100    00  000111257899999997743 2    3588999999999


Q ss_pred             CCcceEEEecc
Q 010933          412 GSAGGITVEAG  422 (497)
Q Consensus       412 ~~~~~~~~~~~  422 (497)
                      .+. ...++++
T Consensus       398 ~k~-~~~i~~~  407 (426)
T d1hzua2         398 LKL-KAVVKDP  407 (426)
T ss_dssp             TEE-EEEECCT
T ss_pred             CeE-EEEECCC
Confidence            843 3556554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=9.7e-20  Score=164.65  Aligned_cols=245  Identities=11%  Similarity=0.102  Sum_probs=178.2

Q ss_pred             cCCcceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      .....+..++|+|||++| ++++.++.|++||+.+++.                       +..+..|.           
T Consensus        29 ~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-----------------------~~~~~~~~-----------   74 (301)
T d1l0qa2          29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAGS-----------   74 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECSS-----------
T ss_pred             ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----------------------eeeeeccc-----------
Confidence            344567899999999987 4666889999999988743                       55555554           


Q ss_pred             ccceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          109 EEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                        .+..++|  ++++..++.+ ..++.+.+|+..+++....                                       
T Consensus        75 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  111 (301)
T d1l0qa2          75 --SPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGT---------------------------------------  111 (301)
T ss_dssp             --SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEE---------------------------------------
T ss_pred             --ccccccc--ccccccccccccccceeeecccccceeeee---------------------------------------
Confidence              3678899  6777766654 5778999999887663321                                       


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                             ..+.....++.++|+++.++. + .++.+.+|+.. .......+        .+...
T Consensus       112 -----------------------~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~  159 (301)
T d1l0qa2         112 -----------------------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV--------SVGRS  159 (301)
T ss_dssp             -----------------------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE--------ECCSS
T ss_pred             -----------------------ccccccceEEEeecCCCeeeeeeccccceeeeecc-ccceeeec--------ccCCC
Confidence                                   123446778999999998865 4 78999999998 44444432        23456


Q ss_pred             eEEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ec
Q 010933          266 ITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY  343 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~  343 (497)
                      +..++++|++ ..++++.. ++.+.+|+....+..    .....              ......++++++++.++.+ .+
T Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         160 PKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEEEEEC
T ss_pred             ceEEEeeccc-cceeeecccccccccccccceeee----ecccc--------------cCCcceeecccccccccccccc
Confidence            7899999999 66666665 467778887765433    22222              2456789999999987664 22


Q ss_pred             ---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcceEEE
Q 010933          344 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITV  419 (497)
Q Consensus       344 ---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~  419 (497)
                         +.|++||+.+ ++.+..+..+...                ++++|+|||++| ++++.|+.|++||+++++.+ .++
T Consensus       221 ~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~-~~~  282 (301)
T d1l0qa2         221 KYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT-ATM  282 (301)
T ss_dssp             SSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEE
T ss_pred             ceeeeeeeeecCC-CeEEEEEcCCCCE----------------EEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE-EEE
Confidence               7899999986 7888777665443                589999999987 57778999999999998444 444


Q ss_pred             e
Q 010933          420 E  420 (497)
Q Consensus       420 ~  420 (497)
                      .
T Consensus       283 ~  283 (301)
T d1l0qa2         283 A  283 (301)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.9e-19  Score=162.65  Aligned_cols=223  Identities=11%  Similarity=0.121  Sum_probs=161.5

Q ss_pred             EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCEEE
Q 010933           48 AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI  127 (497)
Q Consensus        48 asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~  127 (497)
                      ++++.|++|.|||+++++.                       +.++...             ..+..++|  +|||++|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~-----------------------~~~i~~g-------------~~p~~va~--spdG~~l~   47 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVI--SPDGTKVY   47 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEE--CTTSSEEE
T ss_pred             EEECCCCEEEEEECCCCeE-----------------------EEEEECC-------------CCceEEEE--eCCCCEEE
Confidence            4567899999999988743                       4444332             34678999  78999875


Q ss_pred             -EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceee
Q 010933          128 -LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQ  206 (497)
Q Consensus       128 -s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (497)
                       +++.++.|++||+.+++....                                                          
T Consensus        48 v~~~~~~~i~v~d~~t~~~~~~----------------------------------------------------------   69 (301)
T d1l0qa2          48 VANAHSNDVSIIDTATNNVIAT----------------------------------------------------------   69 (301)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEE----------------------------------------------------------
T ss_pred             EEECCCCEEEEEECCCCceeee----------------------------------------------------------
Confidence             556889999999988764331                                                          


Q ss_pred             eeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933          207 KVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  284 (497)
Q Consensus       207 ~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  284 (497)
                        + ..+ ..+..+.++++++.++. + .++.+.+|+.. .++....+        .+......+.++|++..+++++..
T Consensus        70 --~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~dg~~~~~~~~~  136 (301)
T d1l0qa2          70 --V-PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTV--------KTGKSPLGLALSPDGKKLYVTNNG  136 (301)
T ss_dssp             --E-ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE--------ECSSSEEEEEECTTSSEEEEEETT
T ss_pred             --e-ecc-ccccccccccccccccccccccceeeecccc-cceeeeec--------cccccceEEEeecCCCeeeeeecc
Confidence              1 222 24678999999987765 5 88899999998 55555432        244567889999999444556667


Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeeeee
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~~~  362 (497)
                      ++.+.+|+..++...    ..+..              ......+.++|++.+++++. + +.+.+|+... .+......
T Consensus       137 ~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  197 (301)
T d1l0qa2         137 DKTVSVINTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK  197 (301)
T ss_dssp             TTEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE
T ss_pred             ccceeeeecccccee----eeccc--------------CCCceEEEeeccccceeeecccccccccccccc-eeeeeccc
Confidence            899999999887644    33322              24578899999999888774 4 7888888764 66666665


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCc
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSA  414 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~vw~~~~~~~  414 (497)
                      .+...                ..++|+++++.++.++.   ++.|++||..+++.
T Consensus       198 ~~~~~----------------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~  236 (301)
T d1l0qa2         198 VEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (301)
T ss_dssp             CSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             ccCCc----------------ceeeccccccccccccccceeeeeeeeecCCCeE
Confidence            55443                57999999998876543   46899999988743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3.2e-21  Score=183.54  Aligned_cols=327  Identities=9%  Similarity=-0.029  Sum_probs=191.7

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  111 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  111 (497)
                      ...+..++|||||++|++++.|+.|++||+.+++..                  ....+....+|.            +.
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~------------------~~~~i~~~~~~~------------~~  110 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------------TVAEIKIGSEAR------------SI  110 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------------------EEEEEECCSEEE------------EE
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce------------------EEEEEecCCCCC------------Ce
Confidence            357999999999999999999999999999876430                  001122223344            55


Q ss_pred             eeEEEEEecCCCCEE-EEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          112 INRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       112 i~~l~~~~s~~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      +.+.+|  +|||++| ++++.+++|++||..+++............  ......+.+.......+++...+..+ ....+
T Consensus       111 ~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~s~dg~~~~vs-~~~~~  185 (432)
T d1qksa2         111 ETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--DEQEYHPEPRVAAILASHYRPEFIVN-VKETG  185 (432)
T ss_dssp             EECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT--TTCCEESCCCEEEEEECSSSSEEEEE-ETTTT
T ss_pred             EEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc--cceeccCCCceeEEEECCCCCEEEEE-EccCC
Confidence            556666  7899986 567789999999999988765543221110  00112233334344444444443322 22366


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  268 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (497)
                      .+.+|+.......+. ..  -.+...+..++|+|+|++++++  .++.+.++|.. ..+....+....  ...|......
T Consensus       186 ~i~~~d~~~~~~~~~-~~--i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~-~~~~~~~~~~g~--~~~~~~~~~~  259 (432)
T d1qksa2         186 KILLVDYTDLNNLKT-TE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG--QTPHPGRGAN  259 (432)
T ss_dssp             EEEEEETTCSSEEEE-EE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS--SSBCCTTCEE
T ss_pred             eEEEEEccCCCcceE-EE--EcccCccccceECCCCCEEEEeccccceEEEeecc-cceEEEEeccCc--cccccCcccc
Confidence            788888765422222 22  2455678899999999987775  77899999998 555555443221  2234444445


Q ss_pred             EEEeCCCCcEEEEEe-CCCeEEEEEccCCcccccc---cceeccccc-------ccCCc-----cccccccccccEEEEe
Q 010933          269 AEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHS---ARILRDAAE-------SHGSK-----SFFTEIIASISDIKFA  332 (497)
Q Consensus       269 ~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~---~~~~~~~~~-------~~~~~-----~~~~~~~~~i~~~~~s  332 (497)
                      ..+...+ ...++.. .++.|.+|+..........   ......+..       .+...     ..+..|......+++ 
T Consensus       260 ~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-  337 (432)
T d1qksa2         260 FVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-  337 (432)
T ss_dssp             EEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-
T ss_pred             eecCCCC-ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-
Confidence            5555444 4444443 3778888887654322110   011111000       00000     012223333445554 


Q ss_pred             eCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-----CCCcEEE
Q 010933          333 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRI  406 (497)
Q Consensus       333 ~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~v  406 (497)
                      ||++.+++++ |+.+++|++.. +..+   ..|...+               ..++|+|||++|+...     .+|.|.|
T Consensus       338 pDg~~la~~s~d~~~k~w~~~~-~~~l---~~~~~~v---------------~~~~fS~DG~~v~~S~~~~~~~~g~i~i  398 (432)
T d1qksa2         338 FDIKAMTGDGSDPEFKTLPIAE-WAGI---TEGQPRV---------------VQGEFNKDGTEVWFSVWNGKDQESALVV  398 (432)
T ss_dssp             EEGGGCCCSSSCCCEEEECHHH-HHTC---CSSCCEE---------------EEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred             EechhhcccccCCceEeccccc-cccc---CCCCCcE---------------EEeEECCCCCEEEEEEecCCCCCCcEEE
Confidence            8888888875 48888888753 2222   2233222               5799999999886553     4789999


Q ss_pred             EEcCCCCcceEEEec
Q 010933          407 FSHGVGSAGGITVEA  421 (497)
Q Consensus       407 w~~~~~~~~~~~~~~  421 (497)
                      ||..+.+. ...+++
T Consensus       399 ~D~~T~k~-~~~i~~  412 (432)
T d1qksa2         399 VDDKTLEL-KHVIKD  412 (432)
T ss_dssp             EETTTTEE-EEEECC
T ss_pred             EECCCceE-EeEecC
Confidence            99999844 344443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.8e-20  Score=168.91  Aligned_cols=254  Identities=11%  Similarity=0.084  Sum_probs=170.7

Q ss_pred             CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933           45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  124 (497)
Q Consensus        45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~  124 (497)
                      +|+++++.|++|+|||+++++.                       +.++..+...          ..+.+++|  +|||+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-----------------------~~~i~~~~~~----------~~~~~i~~--spDg~   46 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADAG----------PTPMVPMV--APGGR   46 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTCT----------TCCCCEEE--CTTSS
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-----------------------EEEEECCCCC----------CCccEEEE--CCCCC
Confidence            5899999999999999988743                       5555443311          45788999  78999


Q ss_pred             EEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933          125 MFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  203 (497)
Q Consensus       125 ~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (497)
                      +++ +++.++.|.+||+.+++..........                                                 
T Consensus        47 ~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~-------------------------------------------------   77 (337)
T d1pbyb_          47 IAYATVNKSESLVKIDLVTGETLGRIDLSTP-------------------------------------------------   77 (337)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECCBT-------------------------------------------------
T ss_pred             EEEEEECCCCeEEEEECCCCcEEEEEecCCC-------------------------------------------------
Confidence            875 556899999999998875543211110                                                 


Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEEEEE-c------------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  270 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (497)
                             ..+...+..++|+|+++.++++ .            +..+.+||.. .+.....+        .+...+..++
T Consensus        78 -------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~--------~~~~~~~~~~  141 (337)
T d1pbyb_          78 -------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAF--------EAPRQITMLA  141 (337)
T ss_dssp             -------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEE--------ECCSSCCCEE
T ss_pred             -------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeEEEec--------cccCCceEEE
Confidence                   1223345578999999998775 3            4678888888 44444432        2345578899


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCccccccc---------------ceecccccc-----------------------
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA---------------RILRDAAES-----------------------  312 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---------------~~~~~~~~~-----------------------  312 (497)
                      |+|+| +++++++.+  +.+||..+++......               ..+......                       
T Consensus       142 ~s~dg-~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T d1pbyb_         142 WARDG-SKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             ECTTS-SCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             EcCCC-CEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccC
Confidence            99999 888887654  6789988764321100               000000000                       


Q ss_pred             -----------cCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCcc
Q 010933          313 -----------HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  381 (497)
Q Consensus       313 -----------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (497)
                                 ......+..+......+.++|++.+++.+ ++.|++||+.+ ++.+..+......              
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~-~~~~~~~~~~~~~--------------  282 (337)
T d1pbyb_         219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY--------------  282 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC--------------
T ss_pred             ccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCC-CcEEEEEcCCCCE--------------
Confidence                       00000122344455667777788777655 48999999997 8888877644332              


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933          382 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       382 ~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  420 (497)
                        .+++|+|||++|++++.|+.|+|||.++++.+ ..++
T Consensus       283 --~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v-~~i~  318 (337)
T d1pbyb_         283 --YSVNVSTDGSTVWLGGALGDLAAYDAETLEKK-GQVD  318 (337)
T ss_dssp             --CEEEECTTSCEEEEESBSSEEEEEETTTCCEE-EEEE
T ss_pred             --EEEEECCCCCEEEEEeCCCcEEEEECCCCcEE-EEEE
Confidence              58999999999999999999999999998655 4443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=2.3e-20  Score=172.27  Aligned_cols=260  Identities=8%  Similarity=0.020  Sum_probs=169.6

Q ss_pred             EEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc-ccCcccccccccccccceeEEE
Q 010933           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        38 i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      ++|+++++||++++.+++|.+||+.+++.                       +.+++ .|.            ..+.+++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-----------------------~~t~~~~~~------------~~p~~l~   46 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK------------FGPGTAM   46 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC------------CSSCEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE-----------------------EEEEEcCCC------------CCcceEE
Confidence            47899999999999999999999998743                       55555 334            5578999


Q ss_pred             EEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933          117 WCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  195 (497)
Q Consensus       117 ~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (497)
                      |  +|||++++++ +.++.|.+||+.+++...........                                        
T Consensus        47 ~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~----------------------------------------   84 (346)
T d1jmxb_          47 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP----------------------------------------   84 (346)
T ss_dssp             E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------------
T ss_pred             E--CCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc----------------------------------------
Confidence            9  7899987554 57899999999988755432211110                                        


Q ss_pred             eecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-------------cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          196 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                     ..+...+..++|+|||+.++++             .+..+.+|+... ++....+     .....
T Consensus        85 ---------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~-----~~~~~  143 (346)
T d1jmxb_          85 ---------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPV-----RTFPM  143 (346)
T ss_dssp             ---------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCS-----EEEEC
T ss_pred             ---------------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc-ceeeeEE-----Eeeec
Confidence                           1222245568888888887654             256677777663 2222110     01111


Q ss_pred             CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc-------------------------------
Q 010933          263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-------------------------------  311 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~-------------------------------  311 (497)
                      ...+..+.+++++ .++++   ++.+.+||+.+++....    +..+..                               
T Consensus       144 ~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (346)
T d1jmxb_         144 PRQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTVA----LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  215 (346)
T ss_dssp             CSSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEEE----ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             cCceEEEEecCCC-EEEEe---CCcceEEEccCCCEEEE----EecCCCccceEEeccccEEEEEecCCCceEeeeeeee
Confidence            2334455566665 54443   24577777766543211    000000                               


Q ss_pred             ------------------------ccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccc
Q 010933          312 ------------------------SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       312 ------------------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                                              .......+..|...+..+.+++++.+++....+.|++||+.+ ++.+..+......
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~~  294 (346)
T d1jmxb_         216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHTY  294 (346)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSCC
T ss_pred             eccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCCE
Confidence                                    000001123455667788888888888887778999999986 7777777643332


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                                      .+++|+|||++|++++.|+.|++||+++++.+ ..++.
T Consensus       295 ----------------~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i-~~i~~  331 (346)
T d1jmxb_         295 ----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV-KNIKL  331 (346)
T ss_dssp             ----------------CEEEECSSSSCEEEESBSSEEEEEETTTTEEE-EEEEC
T ss_pred             ----------------EEEEEcCCCCEEEEEeCCCcEEEEECccCCEE-EEEEC
Confidence                            58999999999999999999999999998554 44543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=2e-19  Score=165.83  Aligned_cols=290  Identities=10%  Similarity=0.020  Sum_probs=186.4

Q ss_pred             cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecC
Q 010933          120 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  199 (497)
Q Consensus       120 s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (497)
                      ++++++|++++.|++|.+||+.++++....                                                  
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~--------------------------------------------------   34 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSC--------------------------------------------------   34 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEE--------------------------------------------------
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEE--------------------------------------------------
Confidence            688999999999999999999988754321                                                  


Q ss_pred             CccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCc
Q 010933          200 SVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  277 (497)
Q Consensus       200 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  277 (497)
                                .-.|...+.+++|+|||+.++ ++ .++.|++||+. .++....+.... ....+...+..++|+|+| +
T Consensus        35 ----------~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~-t~~~~~~~~~~~-~~~~~~~~~~~v~~s~DG-~  101 (346)
T d1jmxb_          35 ----------VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSS-VPGEVGRSMYSFAISPDG-K  101 (346)
T ss_dssp             ----------ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCC-STTEEEECSSCEEECTTS-S
T ss_pred             ----------EcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc-cCeeeeeecccc-cccccCCceEEEEEecCC-C
Confidence                      124455678999999999874 56 89999999999 555554432221 112223456689999999 7


Q ss_pred             EEEEEe------------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933          278 LLAYSS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  345 (497)
Q Consensus       278 ~l~~~~------------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~  345 (497)
                      ++++++            .++.+.+||..+++..    ..+..+.           ....+..+.+++++++++++  +.
T Consensus       102 ~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~  164 (346)
T d1jmxb_         102 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTFP-----------MPRQVYLMRAADDGSLYVAG--PD  164 (346)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEEE-----------CCSSCCCEEECTTSCEEEES--SS
T ss_pred             EEEEEecCCcceeeeeccCcceEEEEecccceee----eEEEeee-----------ccCceEEEEecCCCEEEEeC--Cc
Confidence            777664            4778899998887654    2222110           01345667777777766543  56


Q ss_pred             EEEEecCCCCceeeeeeecccccccccccC--------CCCCccce--eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLY--------NNDSIFDK--FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      +.+|++.+ ++.+..+..+...........        .......+  ....+.+....++++..++.+.+|+..++...
T Consensus       165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1jmxb_         165 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  243 (346)
T ss_dssp             EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             ceEEEccC-CCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE
Confidence            88999986 777777765543221111000        00000000  11122233445556667788999999998777


Q ss_pred             eEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCC-CCCcccccccCCCeEEEEEecCCCEEEEEe-CCceE
Q 010933          416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF  493 (497)
Q Consensus       416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~-~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~  493 (497)
                      ...+..|...+....+++  ++..     ++....+...+|.. .........+...+.+++|+|||++|++++ ++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~  316 (346)
T d1jmxb_         244 TQEFADLTELYFTGLRSP--KDPN-----QIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA  316 (346)
T ss_dssp             EEEEEECSSCEEEEEECS--SCTT-----EEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred             EEEeecccceeEEEEEeC--CCCE-----EEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            777788888888888887  4444     56665554488832 222233344556789999999999999988 55699


Q ss_pred             EEeC
Q 010933          494 FHYA  497 (497)
Q Consensus       494 i~~~  497 (497)
                      ||++
T Consensus       317 v~D~  320 (346)
T d1jmxb_         317 VFNP  320 (346)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9974

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=4.6e-18  Score=158.75  Aligned_cols=324  Identities=9%  Similarity=-0.001  Sum_probs=199.1

Q ss_pred             cCCcceEEEEEcCCCCEEEEee-----cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      .+..++.+++++|||+.++...     .++.|.+||.++++.                       +.++..+.       
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-----------------------~~~~~~~~-------   67 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----------------------LGHVNGGF-------   67 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-----------------------EEEEeCCC-------
Confidence            3678999999999999987642     346799999888754                       55566655       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  174 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (497)
                             ...++|  +|||++|++++          .++.|.+||..+++..............      ....+....+
T Consensus        68 -------~~~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~------~~~~~~~~~~  132 (373)
T d2madh_          68 -------LPNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD------VGPYSWMNAN  132 (373)
T ss_pred             -------CccEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE------eccCCCcEEE
Confidence                   236889  78999999875          4578999999998876544332221100      0001111223


Q ss_pred             CCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEe
Q 010933          175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIV  252 (497)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~  252 (497)
                      .++.+.+.......++.+.+|+.....   .     ..+.....++.++|+|+.++ +. .|+.+.+|+.. ........
T Consensus       133 s~dg~~~~v~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~-~~~~~~~~  203 (373)
T d2madh_         133 TPNNADLLFFQFAAGPAVGLVVQGGSS---D-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA-GGAAGAGL  203 (373)
T ss_pred             EeCCCcEEEEEEcCCCceEEeeccCCe---E-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC-CceeeEEE
Confidence            344444444444445566677665321   1     23334566788999988764 45 89999999988 44433332


Q ss_pred             ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933          253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  332 (497)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  332 (497)
                      ... ....+.......+.+++++  .++..+.++.+.+|+.........  ..+..+.   ...............++++
T Consensus       204 ~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~  275 (373)
T d2madh_         204 VGA-MLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNK--APIDALS---GGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             eee-ccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEE--Eeecccc---CcEEeeeeccCcceeeEEe
Confidence            111 0111222333455566654  566677899999999887643211  1111100   0000000011234456667


Q ss_pred             eCCCEEEE----------E-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCE--EEEEe
Q 010933          333 NDGQHLLS----------R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH--FATGS  399 (497)
Q Consensus       333 ~~g~~l~~----------~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~s~~  399 (497)
                      +++..++.          . .++.+.+||..+ ++.+..+......                ..++|+|||+.  +++++
T Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~vt~~  338 (373)
T d2madh_         276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSA  338 (373)
T ss_pred             cCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCCe----------------eEEEECCCCCEEEEEEeC
Confidence            76665443          2 237899999986 7777777644432                58999999984  46889


Q ss_pred             CCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          400 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       400 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      .|+.|+|||+.+++.+ ..+..+....+.+++..
T Consensus       339 ~d~~v~v~D~~tg~~~-~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         339 GTEVLHIYDAGAGDQD-QSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CCCeEEEEECCCCCEE-EEECCCCCCCcEEEEec
Confidence            9999999999999654 78877766666666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=8.7e-19  Score=160.87  Aligned_cols=282  Identities=11%  Similarity=0.028  Sum_probs=183.6

Q ss_pred             CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933          124 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  203 (497)
Q Consensus       124 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (497)
                      +++++++.|++|++||+.++++......                                                    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~----------------------------------------------------   29 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITI----------------------------------------------------   29 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC----------------------------------------------------
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEEC----------------------------------------------------
Confidence            4899999999999999998775432111                                                    


Q ss_pred             eeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE
Q 010933          204 RCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  281 (497)
Q Consensus       204 ~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  281 (497)
                             ..+...+.+++|+|||+++ +++ .++.|.+||+. .++....+...  ....+...+..++|+|++ +.+++
T Consensus        30 -------~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~-t~~~~~~~~~~--~~~~~~~~~~~v~~s~dg-~~l~~   98 (337)
T d1pbyb_          30 -------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLS--TPEERVKSLFGAALSPDG-KTLAI   98 (337)
T ss_dssp             -------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECC--BTTEEEECTTCEEECTTS-SEEEE
T ss_pred             -------CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC-CCcEEEEEecC--CCcccccceeeEEEcCCC-cEEEE
Confidence                   2344557789999999987 466 89999999999 45555543222  112233455679999999 77777


Q ss_pred             Ee------------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEE
Q 010933          282 SS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  349 (497)
Q Consensus       282 ~~------------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lw  349 (497)
                      +.            .+..+.+||..+++..    ..+..              ...+..++|+|+|+++++++ +.+.+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~-~~~~~~  159 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGLG-RDLHVM  159 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEES-SSEEEE
T ss_pred             eecCCcceeeeccccccceeeccccCCeEE----Eeccc--------------cCCceEEEEcCCCCEEEEEc-CCccee
Confidence            65            3678888998887644    33332              24578899999999999875 567889


Q ss_pred             ecCCCCceeeeeeecccccccccccC--------CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLY--------NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  421 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  421 (497)
                      |..+ ++....+..+...........        ...............+...+..+..++.+.+|+..++......+..
T Consensus       160 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         160 DPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeec-CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            9986 777777665443221100000        0000000011122222233334445667999999988766666777


Q ss_pred             cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC-CCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEeC
Q 010933          422 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  497 (497)
Q Consensus       422 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~~  497 (497)
                      +........+.+.  +..     ++.+  ++. .+|... ........+...+.+++|+|||++|++++ ++.+.||.+
T Consensus       239 ~~~~~~~~~~~~~--~~~-----~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         239 MDVFYFSTAVNPA--KTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CSSCEEEEEECTT--SSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CCcceEEEEeccc--ceE-----EEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            7777778888773  333     3333  355 888332 23333445677889999999999999988 555999973

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.3e-16  Score=145.91  Aligned_cols=294  Identities=8%  Similarity=0.037  Sum_probs=180.8

Q ss_pred             EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCE
Q 010933           46 YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM  125 (497)
Q Consensus        46 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~  125 (497)
                      .+++++.|++|++|++.....                    .+.+. .-.|.            +.+..|+|  +|||++
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~--------------------l~~~~-~~~~~------------~~v~~la~--spDG~~   50 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA--------------------LTLTQ-VVDVP------------GQVQPMVV--SPDKRY   50 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------------------EEEEE-EEECS------------SCCCCEEE--CTTSSE
T ss_pred             EEEECCCCCcEEEEEEcCCCC--------------------eEEEE-EEcCC------------CCEeEEEE--eCCCCE
Confidence            356778999999999975421                    01111 12455            77999999  789999


Q ss_pred             EEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccce
Q 010933          126 FILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  204 (497)
Q Consensus       126 l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (497)
                      |++++ .|+.|++|++..........          ........+....+++++++++.+.. .++.+.+|+........
T Consensus        51 L~v~~~~d~~i~~~~i~~~~~~~~~~----------~~~~~~~~p~~l~~spDg~~l~v~~~-~~~~v~~~~~~~~~~~~  119 (333)
T d1ri6a_          51 LYVGVRPEFRVLAYRIAPDDGALTFA----------AESALPGSLTHISTDHQGQFVFVGSY-NAGNVSVTRLEDGLPVG  119 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEE----------EEEECSSCCSEEEECTTSSEEEEEET-TTTEEEEEEEETTEEEE
T ss_pred             EEEEECCCCeEEEEEEeCCCCcEEEe----------eecccCCCceEEEEcCCCCEEeeccc-CCCceeeecccccccee
Confidence            86665 58999999997654322110          01111233455566777777766543 35578888877654333


Q ss_pred             eeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE
Q 010933          205 CQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  282 (497)
Q Consensus       205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  282 (497)
                      ....  ..+...+.++.++|+++.++.+  .+..|.+|+..............  ...........++|++++ ..++..
T Consensus       120 ~~~~--~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~p~~i~~~~~~-~~~~~~  194 (333)
T d1ri6a_         120 VVDV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VTTVEGAGPRHMVFHPNE-QYAYCV  194 (333)
T ss_dssp             EEEE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EECSTTCCEEEEEECTTS-SEEEEE
T ss_pred             cccc--cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--eeeecCCCccEEEEeccc-eeEEee
Confidence            3332  3666778899999999988876  67889999987443332211000  012344566889999998 655544


Q ss_pred             -eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceee
Q 010933          283 -SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA  359 (497)
Q Consensus       283 -~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~  359 (497)
                       ...+...+++................   .+..    .........+++++++++++...  ++.+.+|++...+... 
T Consensus       195 ~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~-  266 (333)
T d1ri6a_         195 NELNSSVDVWELKDPHGNIECVQTLDM---MPEN----FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL-  266 (333)
T ss_dssp             ETTTTEEEEEESSCTTSCCEEEEEEEC---SCTT----CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-
T ss_pred             ccccCceEEEeecccccceeeeeeeee---eecC----CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE-
Confidence             45678888887654322111111110   0000    01123456788999999887763  3899999997633333 


Q ss_pred             eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 010933          360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  410 (497)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~  410 (497)
                      ....+.....         .   .++++|+|||++|++++. ++.|.+|+++
T Consensus       267 ~~~~~~~~~~---------~---p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         267 SKEGFQPTET---------Q---PRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEEEEECSS---------S---CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEEEeCCCC---------C---eeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            3222211100         0   147999999999887664 6889999654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.5e-17  Score=152.48  Aligned_cols=306  Identities=10%  Similarity=0.033  Sum_probs=187.0

Q ss_pred             ceEEEEEcCCCCEEEEee-----cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933           34 IVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  108 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  108 (497)
                      ++.-.+.+|||+.+++..     .++.|.+||..+++.                       +.++..+.           
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-----------------------~~~~~~g~-----------   48 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF-----------   48 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS-----------
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-----------------------EEEEECCC-----------
Confidence            344456789999987653     456799999988743                       55555554           


Q ss_pred             ccceeEEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCc
Q 010933          109 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  178 (497)
Q Consensus       109 ~~~i~~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (497)
                         +..++|  +||+++|++++          .|+.|++||..+++............      ......+....+.++.
T Consensus        49 ---~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg  117 (355)
T d2bbkh_          49 ---LPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR------FLVGTYPWMTSLTPDG  117 (355)
T ss_dssp             ---SCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC------CCBSCCGGGEEECTTS
T ss_pred             ---CCceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce------eecCCCCceEEEecCC
Confidence               447899  78999888753          47899999999987665433222110      0001122233345566


Q ss_pred             ccccccccccCcceEEEeecCCccceeeeeeccCCC-------CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceee
Q 010933          179 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHD-------FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF  249 (497)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~  249 (497)
                      ..+.......+..+.+|+.....   .+..+ ..+.       .....+.++++++.++..  .++.+.+++....    
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~----  189 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKA---FKRML-DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF----  189 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTE---EEEEE-ECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC----
T ss_pred             CeeEEecCCCCceeeeeecCCCc---EeeEE-ecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc----
Confidence            66655555556678888877542   22222 1111       122234556666655543  4444554444311    


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  329 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  329 (497)
                               ...+...+....+.+++ ..++.++.++.+++|++..++....  .....+...   .............+
T Consensus       190 ---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~---~~~~~~~p~~~~~~  254 (355)
T d2bbkh_         190 ---------HPEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEA---ERADGWRPGGWQQV  254 (355)
T ss_dssp             ---------SCTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEEC--CCEESSCHH---HHHTTEEECSSSCE
T ss_pred             ---------cceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEE--eccCCcccc---eEeeeeeccceEEE
Confidence                     12233344556777777 7889999999999999988753211  111110000   00000111344668


Q ss_pred             EEeeCCCEEEEEe-c----------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC--EEE
Q 010933          330 KFANDGQHLLSRD-Y----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFA  396 (497)
Q Consensus       330 ~~s~~g~~l~~~~-~----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~  396 (497)
                      ++++++..++... +          ..|.+||..+ ++.+..+......                .+++|+|||+  +++
T Consensus       255 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYA  317 (355)
T ss_dssp             EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred             EEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCCE----------------EEEEEcCCCCeEEEE
Confidence            9999999887642 1          3799999987 7888777655442                5899999998  456


Q ss_pred             EEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933          397 TGSYSNLLRIFSHGVGSAGGITVEAGKNE  425 (497)
Q Consensus       397 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  425 (497)
                      +++.|+.|++||+++++.+ .++.++...
T Consensus       318 ~~~~d~~i~v~D~~tg~~~-~~i~~~G~~  345 (355)
T d2bbkh_         318 LSTGDKTLYIHDAESGEEL-RSVNQLGHG  345 (355)
T ss_dssp             EETTTTEEEEEETTTCCEE-EEECCCCSS
T ss_pred             EECCCCEEEEEECCCCCEE-EEEeCcCCC
Confidence            7778999999999998654 666655443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.4e-16  Score=144.24  Aligned_cols=248  Identities=8%  Similarity=-0.005  Sum_probs=154.4

Q ss_pred             CCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeE
Q 010933          212 AHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFV  288 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i  288 (497)
                      .|...+..++|+|||+.|++ + .|+.|++|++..........     ....+...+..++|+|+| ++|++++. ++.+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~-----~~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v  107 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-----AESALPGSLTHISTDHQG-QFVFVGSYNAGNV  107 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-----EEEECSSCCSEEEECTTS-SEEEEEETTTTEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe-----eecccCCCceEEEEcCCC-CEEeecccCCCce
Confidence            56778999999999999865 4 69999999998544333221     012234556789999999 88887775 7789


Q ss_pred             EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccc
Q 010933          289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH  366 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~  366 (497)
                      .+|+.......    .....           ..+...+.++.++|++++++.++.  ..|.+|+................
T Consensus       108 ~~~~~~~~~~~----~~~~~-----------~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (333)
T d1ri6a_         108 SVTRLEDGLPV----GVVDV-----------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  172 (333)
T ss_dssp             EEEEEETTEEE----EEEEE-----------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eeeccccccce----ecccc-----------cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee
Confidence            99988765432    11111           112356788999999999888753  88999998763333222211111


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcceE---EEe------ccCcceeeeEeecCCC
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGI---TVE------AGKNENRKPILQAAPR  436 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~~~~---~~~------~~~~~v~~~~~~~~~~  436 (497)
                      ..          .......++|++++.+++... ..+...+|+.........   .+.      ........+++++  +
T Consensus       173 ~~----------~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--d  240 (333)
T d1ri6a_         173 TV----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP--D  240 (333)
T ss_dssp             CS----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT--T
T ss_pred             ee----------cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec--c
Confidence            00          000115799999999887655 567788888765433211   111      1123344556666  4


Q ss_pred             cccccccceeEeeccCc-eec--CCCCCccc---ccccCCCeEEEEEecCCCEEEEEe--CCceEEEe
Q 010933          437 ARRSSLSNLTRGLYRQA-HEN--SSSGHHEL---SYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  496 (497)
Q Consensus       437 ~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~---~~~~~~~i~~l~~~p~~~~la~~~--~~~~~i~~  496 (497)
                      ++.    .++.+..++. .+|  ........   .......+.+++|+|||++|++++  ++.+.+|.
T Consensus       241 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         241 GRH----LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             SSE----EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             cCc----eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            443    2444455555 777  22222211   122345677899999999998887  45688873

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=3.2e-14  Score=136.67  Aligned_cols=338  Identities=10%  Similarity=0.057  Sum_probs=184.8

Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      .+.|.++++++..  .|+.|.+||..+++...+                  .--..+..|.            ..|.++.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~------------------~~~~~~~~~~------------~~i~~~~   68 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVF------------------LENSTFDEFG------------HSINDYS   68 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEE------------------ECTTTTTTSS------------SCCCEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEE------------------Echhhhhhcc------------CccceeE
Confidence            5789999998864  478899999999864111                  0113455666            7799999


Q ss_pred             EEecCCCCEEEEEeC---------CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933          117 WCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  187 (497)
Q Consensus       117 ~~~s~~~~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (497)
                      |  +||+++|+.++.         ++.+.+||+.+++...                                        
T Consensus        69 ~--SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~----------------------------------------  106 (470)
T d2bgra1          69 I--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----------------------------------------  106 (470)
T ss_dssp             E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----------------------------------------
T ss_pred             E--CCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc----------------------------------------
Confidence            9  799999998853         4566677776665332                                        


Q ss_pred             cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeec-CCCc-c------
Q 010933          188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM-KPSN-M------  259 (497)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~-~------  259 (497)
                                            +..+...+..+.|+|||+.++...++.+++|+.. ++...+.... .+.. .      
T Consensus       107 ----------------------l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~-~g~~~~~t~~~~~~~~~~g~~d~  163 (470)
T d2bgra1         107 ----------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRITWTGKEDIIYNGITDW  163 (470)
T ss_dssp             ----------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECCSCCBTTTEEESBCCH
T ss_pred             ----------------------cccCCccccccccccCcceeeEeecccceEEECC-CCceeeeeeccCCCcccccccce
Confidence                                  1577788999999999999999988899999988 4444432100 0000 0      


Q ss_pred             ---CCCCCCeEEEEEeCCCCcEEEEEeCCCe-EEEEEccCC---ccccc-----------------ccceecccccccC-
Q 010933          260 ---DDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQS---ALCDH-----------------SARILRDAAESHG-  314 (497)
Q Consensus       260 ---~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~---~~~~~-----------------~~~~~~~~~~~~~-  314 (497)
                         .........+.|+|+| +.|++...|.. +..|++...   .....                 ...++........ 
T Consensus       164 ~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~  242 (470)
T d2bgra1         164 VYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT  242 (470)
T ss_dssp             HHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSS
T ss_pred             eeeeeecCCccccEECCCC-CccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceee
Confidence               0122334668899999 88888866533 444443211   00000                 0000000000000 


Q ss_pred             --------CccccccccccccEEEEeeCCCEEEEEe----c-CeEEEEecCCC-Cceeeeeee------ccccccccccc
Q 010933          315 --------SKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMD-STPVATFKI------HEHLRPKLCDL  374 (497)
Q Consensus       315 --------~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~lwd~~~~-~~~~~~~~~------~~~~~~~~~~~  374 (497)
                              ...........+..+.|.+++++++...    + ..+.++++... +........      ....+.    .
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~----~  318 (470)
T d2bgra1         243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG----R  318 (470)
T ss_dssp             CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS----S
T ss_pred             eccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceee----c
Confidence                    0000111223456788999888666532    1 23455554321 222221110      001000    0


Q ss_pred             CCCCCccceeEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccC
Q 010933          375 YNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ  452 (497)
Q Consensus       375 ~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~  452 (497)
                      ..  .    ....|.++  +.+++....||..+||.+.........+..+...+..+ +.+..+..+     +++...+.
T Consensus       319 ~~--~----~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iy-----f~a~~~~~  386 (470)
T d2bgra1         319 FR--P----SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLY-----YISNEYKG  386 (470)
T ss_dssp             SS--C----CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEE-----EEESCGGG
T ss_pred             cc--C----CCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEE-----EEEecCCC
Confidence            00  0    12344443  34566777888777766544444445665556666665 333323222     22222221


Q ss_pred             ---c-eec--C-CC-CC----cccccccCCCeEEEEEecCCCEEEEEe
Q 010933          453 ---A-HEN--S-SS-GH----HELSYNLSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       453 ---~-~iw--~-~~-~~----~~~~~~~~~~i~~l~~~p~~~~la~~~  488 (497)
                         . ++|  . .+ ..    ......+...+.+++|||||++++...
T Consensus       387 ~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~  434 (470)
T d2bgra1         387 MPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (470)
T ss_dssp             CTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             CcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEe
Confidence               2 466  1 11 11    123446777899999999999987544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.58  E-value=1.9e-12  Score=119.99  Aligned_cols=314  Identities=8%  Similarity=-0.089  Sum_probs=188.6

Q ss_pred             cceeEEEEEecCCCCEEEEEe-----CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      +++..+++  +||++.++...     .++.|.+||..+++.........               .-...++++.+.++.+
T Consensus        21 ~p~~~~a~--spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~---------------~~~~a~SpDG~~l~va   83 (373)
T d2madh_          21 GPTNDEAP--GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---------------LPNPVAAHSGSEFALA   83 (373)
T ss_pred             CCcccccc--CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC---------------CccEEEcCCCCEEEEE
Confidence            78999999  78999887652     44679999999888665432221               1123455666666554


Q ss_pred             cc--------ccCcceEEEeecCCccceeeeeeccCCCCC-------eeEEEeCCCCCEEEEE---cCCeEEEEeCccCc
Q 010933          185 EW--------TENMATKIANVGNSVHARCQKVYPHAHDFN-------INSISNNSDCETFVSA---DDLRINLWNLEISD  246 (497)
Q Consensus       185 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~  246 (497)
                      ..        ..++.+++||....   +.+..+ ..+...       ...+.|+++++.++..   .++.+.+|+.. ..
T Consensus        84 ~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~-~~  158 (373)
T d2madh_          84 STSFSRIAKGKRTDYVEVFDPVTF---LPIADI-ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG-GS  158 (373)
T ss_pred             eecCCcccccccceEEEEEECCCC---cEEEEE-ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc-CC
Confidence            32        23568999999854   333332 223222       2346777887766553   45677788776 33


Q ss_pred             eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933          247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  326 (497)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  326 (497)
                      +..           .+.....++.++|++...+++.+.|+.+.+||...++...    ....+...       .......
T Consensus       159 ~~~-----------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~  216 (373)
T d2madh_         159 SDD-----------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA----GLVGAMLT-------AAQNLLT  216 (373)
T ss_pred             eEE-----------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE----EEeeeccc-------cCcccee
Confidence            322           2334567889999995667888999999999998876542    21110000       0111234


Q ss_pred             cEEEEeeCCCEEEEEecCeEEEEecCCCCceee--eeeecccccccccccCCCCCccceeEEEEcCCCCE----------
Q 010933          327 SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH----------  394 (497)
Q Consensus       327 ~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----------  394 (497)
                      ..+.+++++.+++.+.++.+.+|+... .....  ....+........  .....   ...+++++++..          
T Consensus       217 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~d~~~~~~~~~~~~~  290 (373)
T d2madh_         217 QPAQANKSGRIVWPVYSGKILQADISA-AGATNKAPIDALSGGRKADT--WRPGG---WQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             eeEEECCCceEEEecCCceEEEEEcCC-CeEEEEEeeccccCcEEeee--eccCc---ceeeEEecCCCeEEEecCCCce
Confidence            456667777777777779999999875 33221  1111111000000  00000   024566665554          


Q ss_pred             EEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCC
Q 010933          395 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSK  471 (497)
Q Consensus       395 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~  471 (497)
                      +++...++.+.+||..+++.+ ..+ .+...+..++|+|  |++.   .++++++.++. ++|  .+++.......+...
T Consensus       291 ~~~~~~~~~v~~~d~~t~~~~-~~~-~~~~~~~~~a~sp--DG~~---~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~  363 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVGQTS-SQI-SLGHDVDAISVAQ--DGGP---DLYALSAGTEVLHIYDAGAGDQDQSTVELGSG  363 (373)
T ss_pred             EEeecCCCeEEEEECCCCcEE-EEe-cCCCCeeEEEECC--CCCE---EEEEEeCCCCeEEEEECCCCCEEEEECCCCCC
Confidence            445666788999999988654 444 3556788999999  5542   01577888888 999  455555555566666


Q ss_pred             eEEEEEecC
Q 010933          472 LLHLAWHPT  480 (497)
Q Consensus       472 i~~l~~~p~  480 (497)
                      .+.|+..++
T Consensus       364 P~~l~~~~~  372 (373)
T d2madh_         364 PQVLSVMNE  372 (373)
T ss_pred             CcEEEEecC
Confidence            666666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1e-13  Score=128.61  Aligned_cols=79  Identities=10%  Similarity=0.078  Sum_probs=57.9

Q ss_pred             ccEEEEeeCCCEEEEEe-c---------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCE-
Q 010933          326 ISDIKFANDGQHLLSRD-Y---------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-  394 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~~-~---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-  394 (497)
                      ...++++|++..++... +         ..|.+||..+ ++.+..+......                ..++|+|||+. 
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~  328 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASD  328 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCE
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCce----------------eEEEECCCCCEE
Confidence            45688999988776542 1         3689999987 7878777654432                58999999973 


Q ss_pred             -EEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          395 -FATGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       395 -l~s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                       ++++..|+.|++||..+++.+ ..++..
T Consensus       329 ly~s~~~~~~v~v~D~~tgk~~-~~i~~g  356 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASDQDQ-SSVELD  356 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEEE-EECCCC
T ss_pred             EEEEeCCCCeEEEEECCCCCEE-EEEECC
Confidence             457778999999999998554 555443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=4.2e-13  Score=123.43  Aligned_cols=240  Identities=12%  Similarity=0.029  Sum_probs=136.6

Q ss_pred             eEEEeCCCCCEEEEE-----------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe--C
Q 010933          218 NSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--S  284 (497)
Q Consensus       218 ~~~~~~~~~~~l~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~  284 (497)
                      ..++|+|||+.|++.           .++.|++||.. .++....+................++|+|++ ..+++++  .
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~  127 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSP  127 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSS
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC-CCCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCC
Confidence            368999999988753           37899999999 5555555433322222233344678999999 7777664  4


Q ss_pred             CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeeeee
Q 010933          285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~~~  362 (497)
                      +..+.+||..+++..    ..+..+...      ..........+.++++++.++... + +.+.+++... ...     
T Consensus       128 ~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~-~~~-----  191 (355)
T d2bbkh_         128 APAVGVVDLEGKAFK----RMLDVPDCY------HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-FHP-----  191 (355)
T ss_dssp             SCEEEEEETTTTEEE----EEEECCSEE------EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-CSC-----
T ss_pred             CceeeeeecCCCcEe----eEEecCCcc------eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc-ccc-----
Confidence            678999999987654    222220000      000012344566777777666542 2 5555555543 111     


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEeccCc----------ceeeeEe
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKN----------ENRKPIL  431 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~----------~v~~~~~  431 (497)
                      .+...+               ....+.+++..++.++.++.+++|++..+... ......+..          ....+++
T Consensus       192 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  256 (355)
T d2bbkh_         192 EDEFLI---------------NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY  256 (355)
T ss_dssp             TTSCBC---------------SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred             eeccee---------------eeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence            111111               25678888889999999999999999876432 112222222          1223445


Q ss_pred             ecCCCcccccccceeEeeccC----------c-eecCCC-CCcccccccCCCeEEEEEecCCCE-E-EEEe-CCceEEEe
Q 010933          432 QAAPRARRSSLSNLTRGLYRQ----------A-HENSSS-GHHELSYNLSSKLLHLAWHPTTNL-I-ACAN-GNSLFFHY  496 (497)
Q Consensus       432 ~~~~~~~~~~~~~l~~~~~d~----------~-~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~-l-a~~~-~~~~~i~~  496 (497)
                      ++  ++..     ++....++          . .+|... ............+.+++|+|||+. | +++. ++.+++|.
T Consensus       257 ~~--d~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         257 HR--ALDR-----IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             ET--TTTE-----EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eC--CCCe-----EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence            54  3322     22222221          1 455211 222223344556889999999984 3 3444 56699996


Q ss_pred             C
Q 010933          497 A  497 (497)
Q Consensus       497 ~  497 (497)
                      +
T Consensus       330 ~  330 (355)
T d2bbkh_         330 A  330 (355)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=4e-12  Score=121.80  Aligned_cols=80  Identities=9%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             cCCcceEEEEEcCCCCEEEEeec---------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccc
Q 010933           30 QDVDIVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  100 (497)
Q Consensus        30 ~h~~~I~~i~~sp~g~~lasg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  100 (497)
                      .|...|.++.|||||++||.++.         ++.+.|||+++++                        ...+..|.   
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~------------------------~~~l~~~~---  111 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ------------------------LITEERIP---  111 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE------------------------ECCSSCCC---
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc------------------------ccccccCC---
Confidence            35678999999999999998753         5678999998875                        34466676   


Q ss_pred             ccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheecc
Q 010933          101 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI  148 (497)
Q Consensus       101 ~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~  148 (497)
                               +.+..+.|  +|||+.++... ++.+.+|+..+++....
T Consensus       112 ---------~~~~~~~~--SPDG~~ia~~~-~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         112 ---------NNTQWVTW--SPVGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             ---------TTEEEEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             ---------cccccccc--ccCcceeeEee-cccceEEECCCCceeee
Confidence                     77999999  79999999865 56899999988875543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.40  E-value=2.2e-12  Score=118.81  Aligned_cols=224  Identities=10%  Similarity=0.047  Sum_probs=132.6

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcE-EEEEeCCCeE
Q 010933          212 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL-LAYSSSRGFV  288 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i  288 (497)
                      .|.........+|||++|+..  .+.+|.++|++ ..+..+++.+      .+...++.++|+|++ +. .+++..+..+
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~-t~k~~~ii~i------P~g~gphgi~~spdg-~t~YV~~~~~~~v  140 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLD-IMKTDKITHI------PNVQAIHGLRLQKVP-KTNYVFCNAEFVI  140 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEEC------TTCCCEEEEEECCSS-BCCEEEEEECSCE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECC-CCcEeeEEec------CCCCCccceEEeccC-CEEEEEeccCCcc
Confidence            444455566678999999665  89999999999 5666665422      345678999999998 53 2333322222


Q ss_pred             ------------------EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-------
Q 010933          289 ------------------RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-------  343 (497)
Q Consensus       289 ------------------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------  343 (497)
                                        ..+|..+.+..    .....              ......+.++|+|+++++++.       
T Consensus       141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~----~qI~v--------------~~~p~~v~~spdGk~a~vt~~nse~~~~  202 (441)
T d1qnia2         141 PQPNDGTDFSLDNSYTMFTAIDAETMDVA----WQVIV--------------DGNLDNTDADYTGKYATSTCYNSERAVD  202 (441)
T ss_dssp             ESSCSSSCCCGGGEEEEEEEEETTTCSEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred             cccCcccccccccccceEEeecCccceee----EEEec--------------CCCccceEECCCCCEEEEEecCCCceEE
Confidence                              33555544322    11111              134677888898888877542       


Q ss_pred             -----------------------------------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933          344 -----------------------------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  388 (497)
Q Consensus       344 -----------------------------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (497)
                                                         +.+.+++... .+.+..+.....+                ..+.+
T Consensus       203 id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgksP----------------hGv~v  265 (441)
T d1qnia2         203 LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKNP----------------HGLNT  265 (441)
T ss_dssp             HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CSSEEEECCBSSC----------------CCEEE
T ss_pred             EeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-CceEEEEeCCCCc----------------cCceE
Confidence                                               1222332221 3334444443332                47999


Q ss_pred             cCCCCEEE-EEeCCCcEEEEEcCCCCcceEEEeccCcceee-------------eEeecCCCcccccccceeEeeccCc-
Q 010933          389 SGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-------------PILQAAPRARRSSLSNLTRGLYRQA-  453 (497)
Q Consensus       389 s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~-------------~~~~~~~~~~~~~~~~l~~~~~d~~-  453 (497)
                      +|||++++ ++..+++|.|||+++...   .+.++.....+             ..|.+  ++..     ..+.+-|.. 
T Consensus       266 SPDGkyl~~~~~~~~tvsv~d~~k~~~---~~~~~~~~~~~~~~~~~~glgplh~~fd~--~g~~-----yts~~~ds~v  335 (441)
T d1qnia2         266 SPDGKYFIANGKLSPTVSVIAIDKLDD---LFEDKIELRDTIVAEPELGLGPLHTTFDG--RGNA-----YTTLFIDSQV  335 (441)
T ss_dssp             CTTSCEEEEECTTSSBEEEEEGGGHHH---HTTTSSCGGGGEEECCBCCSCEEEEEECS--SSEE-----EEEETTTTEE
T ss_pred             CCCCCEEEEeCCcCCcEEEEEeehhhh---HhhccCCcceEEEeecccccCcccceecC--CceE-----EEcccccceE
Confidence            99999876 566799999999875321   11111111111             23433  3333     566666666 


Q ss_pred             eecCCC--------C---Ccc------cccccCCCeEEEEEecCCCEEEEEe
Q 010933          454 HENSSS--------G---HHE------LSYNLSSKLLHLAWHPTTNLIACAN  488 (497)
Q Consensus       454 ~iw~~~--------~---~~~------~~~~~~~~i~~l~~~p~~~~la~~~  488 (497)
                      ..|+.+        +   .+.      -..+|...+.+.+++|||++|++++
T Consensus       336 ~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         336 CKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             EEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            777321        1   111      1256777777778999999999995

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.34  E-value=2.5e-11  Score=112.15  Aligned_cols=262  Identities=7%  Similarity=-0.020  Sum_probs=147.0

Q ss_pred             EEEEEcCCCCEEEEee----------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933           36 SAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  105 (497)
Q Consensus        36 ~~i~~sp~g~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  105 (497)
                      ..++|+|||++|++.+          .|+.|.+||..+++.                       ...+..+..+.     
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~-----------------------~~~i~~p~~~~-----  119 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPR-----  119 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-----------------------EEEEEETTSCS-----
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE-----------------------eeeecCCccce-----
Confidence            3589999999998754          467899999988753                       22232221000     


Q ss_pred             cccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933          106 LEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  184 (497)
Q Consensus       106 ~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (497)
                      .........++|  +|||++++.+. .++.+.+||+.+++............      ..+.+......           
T Consensus       120 ~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~v~-----------  180 (368)
T d1mdah_         120 FSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH------IHPGAAATHYL-----------  180 (368)
T ss_dssp             CCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC------CEEEETTEEEC-----------
T ss_pred             ecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce------EccCCCceEEE-----------
Confidence            000012345889  79999998886 57999999999988665443322110      01111111111           


Q ss_pred             ccccCcceEEEeecCCccceeee--eeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCc----
Q 010933          185 EWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN----  258 (497)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----  258 (497)
                       ...++.+.+++...........  .....+...+....+.+++..+.+ .++.+++++... +............    
T Consensus       181 -~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~  257 (368)
T d1mdah_         181 -GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPA-AGATMKAAIDGNESGRK  257 (368)
T ss_dssp             -CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCS-SCCEEECCCCSSCTHHH
T ss_pred             -EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecC-CceEEEeecccccceee
Confidence             1224555555554332111110  011344445556777777754433 455566666652 2222111000000    


Q ss_pred             -cCCCCCCeEEEEEeCCCCcEEEEEeCC---------CeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933          259 -MDDLTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  328 (497)
Q Consensus       259 -~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  328 (497)
                       ..........++++|++ ..++....+         ..|.+||..+++..    ..+..              ...+..
T Consensus       258 ~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----~~~~~--------------~~~~~~  318 (368)
T d1mdah_         258 ADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------GHDSDA  318 (368)
T ss_dssp             HTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------EEEECE
T ss_pred             eeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcEe----EEecC--------------CCceeE
Confidence             00011223457889998 655554322         36899999988654    33322              246889


Q ss_pred             EEEeeCCCE-EE-EEe-cCeEEEEecCCCCceeeeeeecccc
Q 010933          329 IKFANDGQH-LL-SRD-YMNLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       329 ~~~s~~g~~-l~-~~~-~~~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                      ++|+|||+. ++ ++. ++.|++||..+ ++.+.++.....+
T Consensus       319 ~a~spDG~~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~P  359 (368)
T d1mdah_         319 IIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             EEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             EEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEEECCCCC
Confidence            999999973 43 443 49999999987 8989888766554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.30  E-value=8.8e-11  Score=108.01  Aligned_cols=120  Identities=9%  Similarity=-0.019  Sum_probs=77.3

Q ss_pred             cccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933          325 SISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  402 (497)
Q Consensus       325 ~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg  402 (497)
                      ....+.++|||++++++.  +++|.+||+++.   ...+.++-...  .|-..+.+........+|+++|..+.+...|.
T Consensus       259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~---~~~~~~~~~~~--~~~~~~~~~glgplh~~fd~~g~~yts~~~ds  333 (441)
T d1qnia2         259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL---DDLFEDKIELR--DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDS  333 (441)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGH---HHHTTTSSCGG--GGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CccCceECCCCCEEEEeCCcCCcEEEEEeehh---hhHhhccCCcc--eEEEeecccccCcccceecCCceEEEcccccc
Confidence            357899999999988764  399999998641   11111111100  00000111111124578999999899999999


Q ss_pred             cEEEEEcCC---------CCcceEEE-----eccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933          403 LLRIFSHGV---------GSAGGITV-----EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  456 (497)
Q Consensus       403 ~i~vw~~~~---------~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw  456 (497)
                      .|..|++..         ...+...+     .+|...+.+..++|  +|++     |++++.-.+ +.+
T Consensus       334 ~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p--dGk~-----l~s~~k~s~dr~~  395 (441)
T d1qnia2         334 QVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA--DGKW-----LVVLSKFSKDRFL  395 (441)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC--CCCE-----EEEEESCCGGGSC
T ss_pred             eEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC--CCcE-----EEecCccccccCc
Confidence            999999742         11222333     58888888888888  8888     999976555 444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.29  E-value=8.4e-09  Score=94.33  Aligned_cols=274  Identities=8%  Similarity=-0.031  Sum_probs=144.6

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchh-eeccccCCCCCccccccccccccCccccCCCCCcc--ccccccc
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HGYHLEW  186 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  186 (497)
                      ..+.-|+|  +++++.|+++.. +.+..|.+.... .........            .+.++.....++..  ++.....
T Consensus        40 ~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~------------~~~p~~v~~~~~~~~~~v~~a~~  104 (365)
T d1jofa_          40 EPISWMTF--DHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI------------GGHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC------------CSSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCCCEEEE--cCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC------------CCCcEEEEECCCCCEEEEEEecC
Confidence            44667999  789999888765 457778775422 222111111            12233333333332  1211110


Q ss_pred             -----------ccCcceEEEeecCCcc-ceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEe
Q 010933          187 -----------TENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV  252 (497)
Q Consensus       187 -----------~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~  252 (497)
                                 ..++...+..+..... ..............+.++.|+|+|++++++  ....|.+|+....+.....-
T Consensus       105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~  184 (365)
T d1jofa_         105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence                       1122333333332211 111111112334567899999999988876  56788898876444332211


Q ss_pred             ecCCCccCCCCCCeEEEEEeCCCCcEEEE-EeCCCeEEEEEccCCccccc-ccceecccc-cccCCccccccccccccEE
Q 010933          253 DMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDH-SARILRDAA-ESHGSKSFFTEIIASISDI  329 (497)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~~~  329 (497)
                      ..   .........+.++|+|++ +++++ ...++.|.+|++..+..... .......-. ...........+......+
T Consensus       185 ~~---~~~~~g~gPr~i~f~pdg-~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         185 SV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             ce---eecCCCCceEEEEECCCC-ceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            00   122344678999999999 66644 45589999999976543210 000000000 0000000111223345678


Q ss_pred             EEeeCCCEEEEEe--c-----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEe-C
Q 010933          330 KFANDGQHLLSRD--Y-----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGS-Y  400 (497)
Q Consensus       330 ~~s~~g~~l~~~~--~-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~-~  400 (497)
                      .++|+|++|+++.  +     ..|..|++...+..............       ...   -+.++++| +|++|+++. .
T Consensus       261 ~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-------G~~---p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-------GGH---SNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-------CTT---CCCEEECTTCTTEEEEECSS
T ss_pred             EECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-------CCC---ccEEEecCCCCCEEEEEeCC
Confidence            9999999998862  2     34778887654433222211110000       000   04799998 899887665 5


Q ss_pred             CCcEEEEEcCCC
Q 010933          401 SNLLRIFSHGVG  412 (497)
Q Consensus       401 dg~i~vw~~~~~  412 (497)
                      ++.|.+|+++..
T Consensus       331 s~~v~v~~~~~~  342 (365)
T d1jofa_         331 EGWLEIYRWKDE  342 (365)
T ss_dssp             SCEEEEEEEETT
T ss_pred             CCeEEEEEEeCC
Confidence            799999998654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.27  E-value=2.5e-09  Score=95.21  Aligned_cols=239  Identities=11%  Similarity=0.105  Sum_probs=150.2

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      .+..++++|||+++++...+++|+.|+.+..                         ...+....            ..+.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-------------------------~~~~~~~~------------~~~~   71 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-------------------------QQIHATVE------------GKVS   71 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-------------------------EEEEEECS------------SEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-------------------------EEEEEcCC------------CCcc
Confidence            5778999999999999888998888886543                         12223333            6689


Q ss_pred             EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933          114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  193 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (497)
                      +++|  +++|.++++...++.+..|+.........                                             
T Consensus        72 gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  104 (302)
T d2p4oa1          72 GLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVE---------------------------------------------  104 (302)
T ss_dssp             EEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEE---------------------------------------------
T ss_pred             eEEE--cCCCCeEEEecCCceEEEEEeccccccee---------------------------------------------
Confidence            9999  78999888888888888887654331100                                             


Q ss_pred             EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeec--CCCccCCCCCCeEEEE
Q 010933          194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEVITSAE  270 (497)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~  270 (497)
                                 .+.  ........+.+.+.++|+++++. .++.+..++.............  .+............+.
T Consensus       105 -----------~~~--~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1         105 -----------TLL--TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             -----------EEE--ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred             -----------ecc--ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence                       000  01234457889999999888887 8888988888733222211111  1111122234456677


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933          271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW  349 (497)
Q Consensus       271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw  349 (497)
                      ++.+  .++++.+..+.|..++.......... ..+..              ......++++++|+++++.. ++.|..+
T Consensus       172 ~~~~--~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~--------------~~~pdgia~d~dG~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         172 RFGN--FLYVSNTEKMLLLRIPVDSTDKPGEP-EIFVE--------------QTNIDDFAFDVEGNLYGATHIYNSVVRI  234 (302)
T ss_dssp             EETT--EEEEEETTTTEEEEEEBCTTSCBCCC-EEEEE--------------SCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             ccCC--ceeeecCCCCeEEecccccccccccc-ccccC--------------CCCCcceEECCCCCEEEEEcCCCcEEEE
Confidence            7653  56777778899999988765332111 11111              13467899999999777764 4888888


Q ss_pred             ecCCCCceeeeeeecccccccccccCCCCCccceeEEEE---cCCCCEEEEEeCC
Q 010933          350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYS  401 (497)
Q Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~s~~~d  401 (497)
                      +..  ++............             ..++++|   ++|++.|+.++..
T Consensus       235 ~p~--G~~~~~~~~~~~~~-------------~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         235 APD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCC--CCEEEEEecCCCCC-------------CceEEEEcCCCCCCCEEEEECCC
Confidence            765  44333333222211             1158999   6788888766554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=2.3e-08  Score=87.66  Aligned_cols=160  Identities=10%  Similarity=0.135  Sum_probs=111.7

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933          213 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  291 (497)
Q Consensus       213 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~  291 (497)
                      .......+++.++|+.+++. ..+.+.+++..  ++.+..+.     ...+......+++.+++ +++++....+.|++|
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g-----~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~  183 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVF  183 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEE
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccc-----ccccccccceeeeccce-eEEeeeccccceeee
Confidence            34456788999999988887 78888888876  33444321     23456678899999998 888888889999999


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeeeeeecccccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP  369 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~  369 (497)
                      |... +..    ..+..           .+.......++++++|+++++-. . +.|.+|+..  ++.+..+....... 
T Consensus       184 d~~G-~~~----~~~g~-----------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~-  244 (279)
T d1q7fa_         184 NYEG-QYL----RQIGG-----------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-  244 (279)
T ss_dssp             ETTC-CEE----EEESC-----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-
T ss_pred             ecCC-cee----eeecc-----------cccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCC-
Confidence            9754 322    22221           11123467899999999777643 2 579999853  78777775433211 


Q ss_pred             cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933          370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  412 (497)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  412 (497)
                               .   .+.+++.|||.+++ ++.+++|++|.....
T Consensus       245 ---------~---p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         245 ---------Q---CFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ---------C---EEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             ---------C---EeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence                     0   15899999997555 567899999998765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.5e-08  Score=88.43  Aligned_cols=180  Identities=16%  Similarity=0.112  Sum_probs=105.1

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe-
Q 010933          211 HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-  287 (497)
Q Consensus       211 ~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-  287 (497)
                      ..+........|+|+|+.++..  .++...++...........       ............+++++...+++...++. 
T Consensus        79 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  151 (269)
T d2hqsa1          79 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRP  151 (269)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------CCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             eeeecccccceecCCCCeeeEeeecCCccceeeccccccccee-------eeeccccccccccccccccceecccccCCc
Confidence            3456677889999999999874  4444433333312221111       23344445566777777344555555554 


Q ss_pred             -EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeeeeeec
Q 010933          288 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH  364 (497)
Q Consensus       288 -i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~~~~~  364 (497)
                       |.+.++..+...    .. ..             +........|+|+++.++..+ + +...+|............. .
T Consensus       152 ~i~~~~~~~~~~~----~~-~~-------------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~  212 (269)
T d2hqsa1         152 QVYKVNINGGAPQ----RI-TW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-S  212 (269)
T ss_dssp             EEEEEETTSSCCE----EC-CC-------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-C
T ss_pred             eEeeeecccccce----ee-ec-------------ccccccccccccccceeEEEeecCCceeeeEeecccccceEee-c
Confidence             555555554321    11 11             124567788999999988763 2 5555554443233333332 2


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      ....               ....|||||+.|+-.+.   ...|++++++.+..  ..+....+.+...+|+|
T Consensus       213 ~~~~---------------~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~--~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         213 TFLD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK--ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             SSSC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE--EECCCSSSEEEEEEECC
T ss_pred             Cccc---------------cceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEEeCCCCcEEeEEeCC
Confidence            2211               47899999999885554   35689999986532  55666677777888887

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.2e-08  Score=94.47  Aligned_cols=168  Identities=13%  Similarity=0.063  Sum_probs=86.4

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEee-cCCCc-cCCC---------CCCeEEEEEeCCCCcEEEEE
Q 010933          214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-MKPSN-MDDL---------TEVITSAEFHPIYCNLLAYS  282 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~-~~~~---------~~~i~~~~~~~~~~~~l~~~  282 (497)
                      ...+....|||+|+.+|...++.|++.+.. .+...++.. ..... +.+.         ...-.++.|+||| +.||..
T Consensus       113 ~~~l~~~~wSPDG~~iafv~~~nl~~~~~~-~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~  190 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYA  190 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEE
T ss_pred             ccccceeeeccCCceEEEEecceEEEEecC-CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCC-CeEEEE
Confidence            345566889999999999888889998887 444443321 00000 0000         1112577899999 888876


Q ss_pred             eC-CCeEEEEEccC--Cccc--ccc--------------cceeccccccc----CCccccccccccccEEEEeeCCCEEE
Q 010933          283 SS-RGFVRLVDMRQ--SALC--DHS--------------ARILRDAAESH----GSKSFFTEIIASISDIKFANDGQHLL  339 (497)
Q Consensus       283 ~~-dg~i~v~d~~~--~~~~--~~~--------------~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~s~~g~~l~  339 (497)
                      .. +..+..+.+..  +...  ...              +.++.......    ............+..+.|+|++++++
T Consensus       191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~  270 (465)
T d1xfda1         191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (465)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEE
Confidence            54 34454444321  1000  000              00000000000    00000111223467889999998777


Q ss_pred             EEec-----CeEEEEecCCCCceeeeeeecc-cccccccccCCCCCccceeEEEEcCCCCEE
Q 010933          340 SRDY-----MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHF  395 (497)
Q Consensus       340 ~~~~-----~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  395 (497)
                      ...+     ..+.++|..+ ++....+.... ..+..         ..  ....|+|||+.+
T Consensus       271 ~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~---------~~--~~p~~~~dg~~~  320 (465)
T d1xfda1         271 TWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHR---------QN--EEPVFSKDGRKF  320 (465)
T ss_dssp             EEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCC---------CC--CCCEECTTSCSE
T ss_pred             EEEccccccceEEEEcCCC-CcEEEEEEEcCCceEec---------cC--CceeEccCCCee
Confidence            6422     4688889886 65544443222 22110         00  247899999854

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=2.7e-08  Score=86.21  Aligned_cols=154  Identities=8%  Similarity=-0.016  Sum_probs=98.9

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      .....+++.++++++++- .+..+..++.........        ..........+++++++ +++++...++.|..+|.
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC--------CCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEECT
T ss_pred             eecccccccccceeEeeccccccccccccccceeeee--------eecccCCcceeeecCCC-CEeeecccccccccccc
Confidence            456789999999888777 777788887762222111        11122345789999999 88888888899999998


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  372 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  372 (497)
                      ......     .+..            ..-.....++++++|+++++... +.|..++...  .....+......     
T Consensus       169 ~~~~~~-----~~~~------------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--~~~~~~~~~~~~-----  224 (260)
T d1rwia_         169 ESNNQV-----VLPF------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFTGLN-----  224 (260)
T ss_dssp             TTCCEE-----ECCC------------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--SCCEECCCCSCC-----
T ss_pred             ccceee-----eeec------------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--CeEEEEccCCCC-----
Confidence            754321     1111            00134578999999988777654 7888887653  222222111100     


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933          373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  410 (497)
Q Consensus       373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~  410 (497)
                               ....++++++|.++++-..+++|+.++..
T Consensus       225 ---------~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         225 ---------TPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             ---------CEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             ---------CeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence                     01589999999888777777777665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=2e-08  Score=91.75  Aligned_cols=254  Identities=8%  Similarity=-0.042  Sum_probs=136.4

Q ss_pred             CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE--Ee-CCCeE
Q 010933          212 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SS-SRGFV  288 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~-~dg~i  288 (497)
                      .....+..|+++|+++.|.++..+.+..|.+...........      .........+.+++++ +.++.  +. ..+.+
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~p~~v~~~~~~-~~~~v~~a~~~~~~v  109 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEAS------HPIGGHPRANDADTNT-RAIFLLAAKQPPYAV  109 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEE------EECCSSGGGGCTTSCC-EEEEEEECSSTTCCE
T ss_pred             cCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEee------ecCCCCcEEEEECCCC-CEEEEEEecCCCCEE
Confidence            345567789999999999888556788888774444333211      0112234566778887 53322  22 24555


Q ss_pred             EEEEccCCcccccccceecccc----cccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeee--
Q 010933          289 RLVDMRQSALCDHSARILRDAA----ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVAT--  360 (497)
Q Consensus       289 ~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~--  360 (497)
                      ..+.+.......   ..+....    ..... .........+.++.|+|+|+++++++.  ..|.+|+....+.....  
T Consensus       110 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~  185 (365)
T d1jofa_         110 YANPFYKFAGYG---NVFSVSETGKLEKNVQ-NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS  185 (365)
T ss_dssp             EEEEESSSCCEE---EEEEECTTCCEEEEEE-EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred             EEeEccCCCCcc---eeEeeeecceecCccc-CcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc
Confidence            555443211000   0000000    00000 000011234679999999999998864  78889887653433221  


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcceEEE-e-----------------c
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITV-E-----------------A  421 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~-~-----------------~  421 (497)
                      .......             ...+.++|+|+++++++.. .++.|.+|++..+....... .                 .
T Consensus       186 ~~~~~~g-------------~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (365)
T d1jofa_         186 VDAPDPG-------------DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK  252 (365)
T ss_dssp             EECSSTT-------------CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred             eeecCCC-------------CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccccccc
Confidence            1111100             0116899999999887655 48899999998764331111 1                 1


Q ss_pred             cCcceeeeEeecCCCcccccccceeEeecc-Cc----eec--CCC--CCccc------ccccCCCeEEEEEec-CCCEEE
Q 010933          422 GKNENRKPILQAAPRARRSSLSNLTRGLYR-QA----HEN--SSS--GHHEL------SYNLSSKLLHLAWHP-TTNLIA  485 (497)
Q Consensus       422 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-~~----~iw--~~~--~~~~~------~~~~~~~i~~l~~~p-~~~~la  485 (497)
                      +......+.++|  ++++     +.++... ..    .++  ..+  .....      .........+++++| +|++|+
T Consensus       253 ~~~~~~~i~~sp--dG~~-----lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~  325 (365)
T d1jofa_         253 GLYRADVCALTF--SGKY-----MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA  325 (365)
T ss_dssp             BSEEEEEEEECT--TSSE-----EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred             ccCCccceEECC--CCCE-----EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEE
Confidence            112234567777  6666     5554321 11    122  111  11110      111223456799998 899998


Q ss_pred             EEe--CCceEEEe
Q 010933          486 CAN--GNSLFFHY  496 (497)
Q Consensus       486 ~~~--~~~~~i~~  496 (497)
                      ++.  ++.+.+|.
T Consensus       326 va~~~s~~v~v~~  338 (365)
T d1jofa_         326 ITDDQEGWLEIYR  338 (365)
T ss_dssp             EECSSSCEEEEEE
T ss_pred             EEeCCCCeEEEEE
Confidence            887  56688885

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.06  E-value=8.2e-08  Score=85.17  Aligned_cols=205  Identities=14%  Similarity=0.113  Sum_probs=128.0

Q ss_pred             ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933          111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  190 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (497)
                      .+..+++  ++||+++++...+++|..|+..... ...                                          
T Consensus        29 ~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~g~~-~~~------------------------------------------   63 (302)
T d2p4oa1          29 FLENLAS--APDGTIFVTNHEVGEIVSITPDGNQ-QIH------------------------------------------   63 (302)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTTCCE-EEE------------------------------------------
T ss_pred             CcCCEEE--CCCCCEEEEeCCCCEEEEEeCCCCE-EEE------------------------------------------
Confidence            3778999  7899998888889988888755322 110                                          


Q ss_pred             ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933          191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  269 (497)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (497)
                                          ......+.+++|.++|+++++. .++.+..|+..........+.     ..........+
T Consensus        64 --------------------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~n~i  118 (302)
T d2p4oa1          64 --------------------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL-----TLPDAIFLNGI  118 (302)
T ss_dssp             --------------------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-----ECTTCSCEEEE
T ss_pred             --------------------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc-----ccCCcccccee
Confidence                                2334568899999999999988 888888887653322222110     11234567899


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEE
Q 010933          270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLK  347 (497)
Q Consensus       270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~  347 (497)
                      ++.+++ +++++.+.++.+..+|...+...     .+......  ..............+.+  ++..+..+.  .+.|.
T Consensus       119 ~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         119 TPLSDT-QYLTADSYRGAIWLIDVVQPSGS-----IWLEHPML--ARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLL  188 (302)
T ss_dssp             EESSSS-EEEEEETTTTEEEEEETTTTEEE-----EEEECGGG--SCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEE
T ss_pred             EEccCC-CEEeeccccccceeeeccCCcce-----eEecCCcc--ceeeccCcccccccccc--cCCceeeecCCCCeEE
Confidence            999999 88888888999999998876422     11110000  00000111123344554  455555553  38888


Q ss_pred             EEecCCCCcee--eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933          348 LWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  411 (497)
Q Consensus       348 lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~  411 (497)
                      .+++...+...  ..+......                ..++++++|+++++...++.|..++...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~p----------------dgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNI----------------DDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCC----------------SSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             eccccccccccccccccCCCCC----------------cceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            88876532221  111111111                3799999999888888899999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.05  E-value=1.1e-07  Score=84.53  Aligned_cols=252  Identities=10%  Similarity=0.089  Sum_probs=145.8

Q ss_pred             ceEEEEEcCCCCEEEEeec-------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933           34 IVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  106 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  106 (497)
                      ....++|.|+|++.++...       +|+|..||..++..                     .....-.....        
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~---------------------~~~~~~~~~~~--------   69 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK---------------------TVICKPEVNGY--------   69 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE---------------------EEEECCEETTE--------
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcE---------------------EEEECCccccC--------
Confidence            3456799999998776332       46788888877643                     11110000000        


Q ss_pred             ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933          107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  186 (497)
Q Consensus       107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (497)
                        ...-..++|  ++++..++++...+.+...+.+++........ .                                 
T Consensus        70 --~g~P~Gl~~--~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~-~---------------------------------  111 (314)
T d1pjxa_          70 --GGIPAGCQC--DRDANQLFVADMRLGLLVVQTDGTFEEIAKKD-S---------------------------------  111 (314)
T ss_dssp             --ECCEEEEEE--CSSSSEEEEEETTTEEEEEETTSCEEECCSBC-T---------------------------------
T ss_pred             --CCcceeEEE--eCCCCEEEEEECCCeEEEEeCCCcEEEEEecc-c---------------------------------
Confidence              023567889  68888888887767788778765432211000 0                                 


Q ss_pred             ccCcceEEEeecCCccceeeeeeccCC-CCCeeEEEeCCCCCEEEEE-c---------------CCeEEEEeCccCceee
Q 010933          187 TENMATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCF  249 (497)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~-~---------------d~~i~iwd~~~~~~~~  249 (497)
                                              .+. -...+.+++.++|++.++- .               .|.|+.++.+  +...
T Consensus       112 ------------------------~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~  165 (314)
T d1pjxa_         112 ------------------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI  165 (314)
T ss_dssp             ------------------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE
T ss_pred             ------------------------cccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec--Ccee
Confidence                                    011 1134678888888877763 1               2344444443  3222


Q ss_pred             EEeecCCCccCCCCCCeEEEEEeCCCC----cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933          250 NIVDMKPSNMDDLTEVITSAEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  325 (497)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (497)
                      ..        ...-.....++|+|++.    .++++-+..+.|..||+.....+... +.+....         ......
T Consensus       166 ~~--------~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-~~~~~~~---------~~~~~~  227 (314)
T d1pjxa_         166 QV--------DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-KVWGHIP---------GTHEGG  227 (314)
T ss_dssp             EE--------EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-EEEEECC---------CCSSCE
T ss_pred             Ee--------eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee-eEEEEcc---------cccccc
Confidence            22        11223346889998762    14444566889999987643222110 1111100         000123


Q ss_pred             ccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE-EEEeCCCc
Q 010933          326 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNL  403 (497)
Q Consensus       326 i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~  403 (497)
                      ...+++..+|++.++.. .+.|.+||.+. ++.+..+.......               ++++|.||++.| ++.+.+|+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~---------------t~~afg~d~~~lyVt~~~~g~  291 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTTE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCE---------------EEEEEeCCCCEEEEEECCCCc
Confidence            45799999999877764 49999999874 56666665443221               589999999754 56677888


Q ss_pred             EEEEEcCCC
Q 010933          404 LRIFSHGVG  412 (497)
Q Consensus       404 i~vw~~~~~  412 (497)
                      |...++...
T Consensus       292 i~~~~~~~~  300 (314)
T d1pjxa_         292 VWKFEWQRN  300 (314)
T ss_dssp             EEEEECSSC
T ss_pred             EEEEECCCC
Confidence            888887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.2e-07  Score=82.43  Aligned_cols=218  Identities=13%  Similarity=0.098  Sum_probs=125.2

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CC
Q 010933          212 AHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG  286 (497)
Q Consensus       212 ~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg  286 (497)
                      .+...+.+.+|||||+.||..  ..+  .+.+.+.. .+....        +..+........|+|+| ..++.... ++
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~spdg-~~i~~~~~~~~  105 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTG  105 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------EECCSSCEEEEEECTTS-SEEEEEECTTS
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc-cCceeE--------EeeeecccccceecCCC-CeeeEeeecCC
Confidence            345567889999999999875  333  45666665 232222        33466778899999999 66665544 44


Q ss_pred             eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cC--eEEEEecCCCCceeeeee
Q 010933          287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YM--NLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~--~i~lwd~~~~~~~~~~~~  362 (497)
                      ...++.........  ......              ........++++++.++...  ++  .|.+.++..  .....+.
T Consensus       106 ~~~~~~~~~~~~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~~~~  167 (269)
T d2hqsa1         106 SLNLYVMDLASGQI--RQVTDG--------------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRIT  167 (269)
T ss_dssp             SCEEEEEETTTCCE--EECCCC--------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEECC
T ss_pred             ccceeecccccccc--eeeeec--------------cccccccccccccccceecccccCCceEeeeeccc--ccceeee
Confidence            43333332221110  011111              12334556777777665543  23  556666653  3333333


Q ss_pred             ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccc
Q 010933          363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  441 (497)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  441 (497)
                      .....               .....|+|+++.++..+.+ +...+|........ ..+..+........|+|  ||+.  
T Consensus       168 ~~~~~---------------~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SP--DG~~--  227 (269)
T d2hqsa1         168 WEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAP--NGTM--  227 (269)
T ss_dssp             CSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECT--TSSE--
T ss_pred             ccccc---------------ccccccccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECC--CCCE--
Confidence            22221               1468999999998876654 44444444433333 34445566667888999  7776  


Q ss_pred             ccceeEeeccCc--eec---CCCCCcccccccCCCeEEEEEecC
Q 010933          442 LSNLTRGLYRQA--HEN---SSSGHHELSYNLSSKLLHLAWHPT  480 (497)
Q Consensus       442 ~~~l~~~~~d~~--~iw---~~~~~~~~~~~~~~~i~~l~~~p~  480 (497)
                         |+..+..+.  .+|   ..+.....+......+...+|||-
T Consensus       228 ---i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         228 ---VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ---EEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             ---EEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence               555554443  555   334444556666778888999984

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.84  E-value=3.7e-06  Score=73.16  Aligned_cols=153  Identities=8%  Similarity=0.076  Sum_probs=96.3

Q ss_pred             eeEEEeCCC-CCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          217 INSISNNSD-CETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       217 v~~~~~~~~-~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      ...+++.++ +..+++.  .++.|..++.. . .....+      -.........+++.+++ .++++....+.+.+++.
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g-~~~~~~------~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~  142 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G-QFVRKF------GATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQ  142 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTT-S-CEEEEE------CTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred             cccccccccccccceeccCCcccccccccc-c-cceeec------CCCcccccceeccccCC-cEEEEeeccceeeEecc
Confidence            334555443 4444444  56677777765 3 333332      12344567889999998 88877777788888886


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccccccccc
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  372 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  372 (497)
                      .. +.+    ..+..           ..+......+++.++++++++... +.|++||..  ++.+.++.......    
T Consensus       143 ~g-~~~----~~~g~-----------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~g~~g~~~----  200 (279)
T d1q7fa_         143 NG-NVL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGEGITN----  200 (279)
T ss_dssp             TS-CEE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCTTTSC----
T ss_pred             CC-cee----ecccc-----------cccccccceeeeccceeEEeeeccccceeeeecC--Cceeeeeccccccc----
Confidence            53 222    22211           112345778899999987777655 999999975  67776663221110    


Q ss_pred             ccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEc
Q 010933          373 DLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSH  409 (497)
Q Consensus       373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~  409 (497)
                               ....+++.++|+.+++-.. ++.|.+|+.
T Consensus       201 ---------~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         201 ---------YPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             ---------SEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ---------CCcccccccCCeEEEEECCCCcEEEEECC
Confidence                     0158999999997777554 457999884

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=9.9e-07  Score=76.05  Aligned_cols=231  Identities=6%  Similarity=-0.035  Sum_probs=132.8

Q ss_pred             CCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933          214 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  291 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~  291 (497)
                      .....++++.++|+..++.  ..+.+..++..........       ..+ ......+++++++ +++++....+.++++
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-------~~~-~~~p~gvav~~~g-~i~v~d~~~~~i~~~   83 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-------FNG-LYQPQGLAVDGAG-TVYVTDFNNRVVTLA   83 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-------CCS-CCSCCCEEECTTC-CEEEEETTTEEEEEC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-------cCC-ccCceEEEEcCCC-CEEEeeeeeceeeee
Confidence            3456799999999987775  5677888776633222211       222 2345788999998 877776666667666


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccccccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  370 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~  370 (497)
                      +-.+....    .....              ......++++++++++++-.. ..+..++............+...+   
T Consensus        84 ~~~~~~~~----~~~~~--------------~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p---  142 (260)
T d1rwia_          84 AGSNNQTV----LPFDG--------------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP---  142 (260)
T ss_dssp             TTCSCCEE----CCCCS--------------CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC---
T ss_pred             eeccceee----eeeee--------------eeecccccccccceeEeeccccccccccccccceeeeeeecccCCc---
Confidence            54443221    11111              134678999999988776543 677777765311112112222221   


Q ss_pred             ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeec
Q 010933          371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY  450 (497)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  450 (497)
                                   ..++++++++++++...++.|..++.+..... ............+++.+  ++.+     .++-..
T Consensus       143 -------------~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~--~g~l-----~vsd~~  201 (260)
T d1rwia_         143 -------------DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDE--AGTV-----YVTEHN  201 (260)
T ss_dssp             -------------CEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECT--TCCE-----EEEETT
T ss_pred             -------------ceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeee--eeee-----eeeecC
Confidence                         47999999998888888899999997755322 22223334456777766  4433     344333


Q ss_pred             cCc-eecCCCCCccccc--ccCCCeEEEEEecCCCEEEEEe-CCceEEE
Q 010933          451 RQA-HENSSSGHHELSY--NLSSKLLHLAWHPTTNLIACAN-GNSLFFH  495 (497)
Q Consensus       451 d~~-~iw~~~~~~~~~~--~~~~~i~~l~~~p~~~~la~~~-~~~~~i~  495 (497)
                      .+. ..+..........  ..-.....|+++++|+++++-. .+.+..+
T Consensus       202 ~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         202 TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             TTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            333 3332222222222  1223567999999998766544 3345544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.80  E-value=4e-06  Score=74.52  Aligned_cols=240  Identities=10%  Similarity=0.103  Sum_probs=138.0

Q ss_pred             ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      .+..++|.++|++.++-..++.|..|+.+++..                       ...+....            ....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-----------------------~~~~~~~~------------~~p~   85 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----------------------KRPFVSHK------------ANPA   85 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------------------EEEEECSS------------SSEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-----------------------EEEEeCCC------------CCee
Confidence            456899999999777777888898888776532                       11122222            5578


Q ss_pred             EEEEEecCCCCEEEEEeCC--ccEEEeec--CchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          114 RVRWCAAPNGSMFILSTND--KTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d--~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+++  +++|+++++...+  ....++.+  ..+.......                                       
T Consensus        86 gla~--~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~---------------------------------------  124 (319)
T d2dg1a1          86 AIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE---------------------------------------  124 (319)
T ss_dssp             EEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC---------------------------------------
T ss_pred             EEEE--CCCCCEEEEecCCCccceeEEEEcCCCceeeeecc---------------------------------------
Confidence            8999  6888877765432  23333333  2222111000                                       


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDL  262 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  262 (497)
                                          ...-....+.+.+.++|++.++. .      .+.+..++.. .+....+        ...
T Consensus       125 --------------------~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~--------~~~  175 (319)
T d2dg1a1         125 --------------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI--------IQN  175 (319)
T ss_dssp             --------------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE--------EEE
T ss_pred             --------------------CCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEE--------eec
Confidence                                01113356789999999877774 2      2345555544 2222221        112


Q ss_pred             CCCeEEEEEeCCCCcEE-EEEeCCCeEEEEEccCCccccccc-ceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933          263 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  340 (497)
Q Consensus       263 ~~~i~~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  340 (497)
                      -.....++|+|++ +.| ++-+..+.|..||+.......... ..... .         .........|+++++|++.++
T Consensus       176 ~~~pnGia~s~dg-~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~-~---------~~~~~~PdGl~vD~~G~l~Va  244 (319)
T d2dg1a1         176 ISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-Y---------FTGHEGPDSCCIDSDDNLYVA  244 (319)
T ss_dssp             ESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-E---------CCSSSEEEEEEEBTTCCEEEE
T ss_pred             cceeeeeeecccc-ceEEEecccCCceEEEEEcCCCceeccccceeee-c---------cCCccceeeeeEcCCCCEEEE
Confidence            2345789999999 655 555668899999986432111000 00000 0         000122467999999997777


Q ss_pred             Ee-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933          341 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  400 (497)
Q Consensus       341 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~  400 (497)
                      .. .+.|.+||..  ++.+.++........         .....++++|.+++..+++...
T Consensus       245 ~~~~g~V~~~~p~--G~~l~~i~~P~~~~~---------~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         245 MYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEE
T ss_pred             EcCCCEEEEECCC--CcEEEEEeCCCcCCC---------cCceeeeEEEeCCCCEEEEEcC
Confidence            64 4999999963  888887765432110         0111258999998877765543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.71  E-value=2e-05  Score=69.80  Aligned_cols=167  Identities=16%  Similarity=0.112  Sum_probs=95.5

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC----
Q 010933          214 DFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----  284 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----  284 (497)
                      ......+++.++|+++++. .+    +.+...+.. .........     -..-......+++.++| ++.++...    
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~-~~~~~~~~~-----~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~  153 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLSTAYCIDDMVFDSKG-GFYFTDFRGYST  153 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSSCCCEEEEEECTTS-CEEEEECCCBTT
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC-Cceeeeecc-----CCCcccCCcceeEEecc-ceeecccccccc
Confidence            3456789999999988875 32    334444444 222222210     11123456789999999 76655322    


Q ss_pred             --CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeee
Q 010933          285 --RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVAT  360 (497)
Q Consensus       285 --dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~  360 (497)
                        .+.+..++...+...    .....              -...+.++|+|+++.|..++ . +.|+.|++..++.....
T Consensus       154 ~~~g~v~~~~~dg~~~~----~~~~~--------------~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~  215 (319)
T d2dg1a1         154 NPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP  215 (319)
T ss_dssp             BCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred             cCcceeEEEecccceeE----EEeec--------------cceeeeeeeccccceEEEecccCCceEEEEEcCCCceecc
Confidence              123444444332211    11111              13357899999999877664 3 89999998754443332


Q ss_pred             eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933          361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  414 (497)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~  414 (497)
                      .........        .....--.+++.++|++.++....+.|.+|+- .++.
T Consensus       216 ~~~~~~~~~--------~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~  260 (319)
T d2dg1a1         216 FGATIPYYF--------TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYP  260 (319)
T ss_dssp             EEEEEEEEC--------CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCE
T ss_pred             ccceeeecc--------CCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcE
Confidence            221100000        00000137999999998888888999999995 5543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.64  E-value=2e-06  Score=74.81  Aligned_cols=70  Identities=14%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             EEcCC--CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933           39 EFDKT--GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  116 (497)
Q Consensus        39 ~~sp~--g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~  116 (497)
                      ..|||  |+.+|..+ +|.|.+.|+.+++.                        ..+..+.            +.+...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~------------------------~~Lt~~~------------~~~~~p~   47 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST------------------------RKIVSNL------------GVINNAR   47 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE------------------------EEEECSS------------SEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE------------------------EEEecCC------------CcccCEE
Confidence            45788  99998765 56788889988753                        2344444            6678899


Q ss_pred             EEecCCCCEEEEEeC-C-----ccEEEeecCchheec
Q 010933          117 WCAAPNGSMFILSTN-D-----KTIKLWKVRDQKVKK  147 (497)
Q Consensus       117 ~~~s~~~~~l~s~s~-d-----~~i~iw~~~~~~~~~  147 (497)
                      |  +|||+.|+.... +     ..|.+++..+++...
T Consensus        48 ~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2          48 F--FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             E--CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             E--CCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            9  799999987642 2     235556666666443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.64  E-value=4.4e-05  Score=67.26  Aligned_cols=239  Identities=10%  Similarity=0.014  Sum_probs=132.4

Q ss_pred             CeeEEEeCCCCCEEEEE-c-------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe
Q 010933          216 NINSISNNSDCETFVSA-D-------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  287 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  287 (497)
                      ..-.++|.++|+++++. .       +++|..||... +...... ..  ...........++|++++ +.++++...+.
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~-~~~~~~~-~~--~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~   93 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-GKKTVIC-KP--EVNGYGGIPAGCQCDRDA-NQLFVADMRLG   93 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-CCEEEEE-CC--EETTEECCEEEEEECSSS-SEEEEEETTTE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCC-CcEEEEE-CC--ccccCCCcceeEEEeCCC-CEEEEEECCCe
Confidence            45678999999988774 2       46788998873 3322211 00  011122346789999999 88888888788


Q ss_pred             EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC--------------eEEEEecCC
Q 010933          288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM--------------NLKLWDIRM  353 (497)
Q Consensus       288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~--------------~i~lwd~~~  353 (497)
                      |..+|...+...     ......+..        .-...+.+++.++|++.++-..+              .-++|.+..
T Consensus        94 i~~~~~~g~~~~-----~~~~~~~g~--------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          94 LLVVQTDGTFEE-----IAKKDSEGR--------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             EEEEETTSCEEE-----CCSBCTTSC--------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             EEEEeCCCcEEE-----EEecccccc--------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee
Confidence            888887654321     111100000        01236789999999988774211              123444443


Q ss_pred             CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-----EEEEEeCCCcEEEEEcCCCCcceE-----EEec-c
Q 010933          354 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-----HFATGSYSNLLRIFSHGVGSAGGI-----TVEA-G  422 (497)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~l~s~~~dg~i~vw~~~~~~~~~~-----~~~~-~  422 (497)
                      +++.......-..+                +.++|+|++.     ++++-+..+.|..|++.....+..     .+.+ .
T Consensus       161 dg~~~~~~~~~~~p----------------NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         161 DGQMIQVDTAFQFP----------------NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TSCEEEEEEEESSE----------------EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cCceeEeeCCccee----------------eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence            35444333322221                4799999764     445556788999998765433211     1111 1


Q ss_pred             CcceeeeEeecCCCcccccccceeEeeccCc-eecCCC-CCc-ccccccCCCeEEEEEecCCCEEEEEeC--CceEEE
Q 010933          423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHH-ELSYNLSSKLLHLAWHPTTNLIACANG--NSLFFH  495 (497)
Q Consensus       423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~-~~~~~~~~~i~~l~~~p~~~~la~~~~--~~~~i~  495 (497)
                      ......+++..  ++.+     .++....+. .++... ... ..........++++|.|+++.|.+.+.  +.++.+
T Consensus       225 ~~~pdGiavD~--~Gnl-----yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         225 EGGADGMDFDE--DNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             SCEEEEEEEBT--TCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccceeeEEec--CCcE-----EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            11233455544  3433     333333333 555432 222 223334567889999999986655543  335544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.6e-05  Score=72.88  Aligned_cols=78  Identities=14%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             ceEEEEEcCCCCEEEEee---------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933           34 IVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  104 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  104 (497)
                      .+....|||||++|+...         ..+.+.|+|+.++..                     ..+.......       
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~---------------------~~l~~~~~~~-------  113 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP---------------------QSLDPPEVSN-------  113 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC---------------------EECCCTTCCS-------
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce---------------------eeccCccCCc-------
Confidence            566788999999988764         356889999988753                     2222222222       


Q ss_pred             ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheec
Q 010933          105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK  147 (497)
Q Consensus       105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~  147 (497)
                           ..+....|  +|||+.++... ++.|.+.+..++...+
T Consensus       114 -----~~l~~~~w--SPDG~~iafv~-~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1         114 -----AKLQYAGW--GPKGQQLIFIF-ENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             -----CCCSBCCB--CSSTTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred             -----cccceeee--ccCCceEEEEe-cceEEEEecCCCceEE
Confidence                 44566788  78999998876 4567777776655443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=0.00018  Score=62.51  Aligned_cols=147  Identities=10%  Similarity=0.038  Sum_probs=90.6

Q ss_pred             CeeEEEeCCCCCEEEEE-c----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933          216 NINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  290 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  290 (497)
                      .++.+.+.|+|++.++. .    .+.-.+|.+. .++....       . ..-.....++|++++..++++-+..+.|..
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~-------~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKL-------F-ADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEE-------E-EEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEE-------e-eccCCcceeeecCCCceEEEeecccceeeE
Confidence            57788899999887774 2    2344566655 3443332       1 122345789999999334555566889999


Q ss_pred             EEccCCcccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeeccccc
Q 010933          291 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLR  368 (497)
Q Consensus       291 ~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~  368 (497)
                      |++....... .....+..          +.+..+....+++..+|++.++.- .+.|..||..  ++.+..+.......
T Consensus       175 ~~~d~~~~~~~~~~~~~~~----------~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~~~i~lP~~~~  242 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQT  242 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSBE
T ss_pred             eeecccccccccceEEEec----------cCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEeeEecCCCCce
Confidence            9875422111 10111111          111124567899999998777764 4889999964  88888887654322


Q ss_pred             ccccccCCCCCccceeEEEEc-CCCCEEEEE
Q 010933          369 PKLCDLYNNDSIFDKFECSVS-GDGLHFATG  398 (497)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~  398 (497)
                                     ++++|- +|.+.|+..
T Consensus       243 ---------------T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         243 ---------------TCPAFIGPDASRLLVT  258 (295)
T ss_dssp             ---------------EEEEEESTTSCEEEEE
T ss_pred             ---------------EEEEEeCCCCCEEEEE
Confidence                           689996 576665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.37  E-value=0.00024  Score=61.77  Aligned_cols=182  Identities=13%  Similarity=0.126  Sum_probs=110.2

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC----CCeEEE
Q 010933          215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~v  290 (497)
                      ..+.++++.++|.+++++.+ .+.++|.. .++.....+..   .......+..+.+.|+| ++.++...    .+.-.+
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~-tg~~~~l~~~~---~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecc-cceeeEEeeee---cCCCcccceeeEECCCC-CEEEEeccccccccceeE
Confidence            35778888889877776654 58889988 44433332111   11123457889999999 76555432    234456


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCcee----eeeeec
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV----ATFKIH  364 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~----~~~~~~  364 (497)
                      |.+..++..    .....              ....+.++|+++++.+..++ . +.|..|++.......    ..+...
T Consensus       133 ~~~~~g~~~----~~~~~--------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~  194 (295)
T d2ghsa1         133 YHVAKGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  194 (295)
T ss_dssp             EEEETTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             eeecCCcEE----EEeec--------------cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc
Confidence            666655432    22222              13457899999999877664 3 889999875322111    111111


Q ss_pred             ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933          365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  434 (497)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~  434 (497)
                      ....          .  ....+++..+|++.++.-..+.|..||. .++. ...+.--...+++++|-..
T Consensus       195 ~~~~----------g--~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~-~~~i~lP~~~~T~~~FGG~  250 (295)
T d2ghsa1         195 TGIK----------G--GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH-IARYEVPGKQTTCPAFIGP  250 (295)
T ss_dssp             TTSS----------S--EEEEEEECTTSCEEEEEETTTEEEEECT-TCCE-EEEEECSCSBEEEEEEEST
T ss_pred             Cccc----------c--cccceEEcCCCCEEeeeeCCCceEEecC-CCcE-eeEecCCCCceEEEEEeCC
Confidence            0000          0  0147999999998888778889999995 4533 3555554456778888653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.35  E-value=3e-05  Score=67.01  Aligned_cols=99  Identities=17%  Similarity=0.069  Sum_probs=64.0

Q ss_pred             eCCC--CCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-C-----CeEEEEEc
Q 010933          222 NNSD--CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-----GFVRLVDM  293 (497)
Q Consensus       222 ~~~~--~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-----g~i~v~d~  293 (497)
                      .+|+  |+.++...++.|.+.|+. +++..+        +..+...+...+|+||| +.||.... +     ..|.+++.
T Consensus         6 ~sPdi~G~~v~f~~~~dl~~~d~~-~g~~~~--------Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCDDLWEHDLK-SGSTRK--------IVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             EEEEEETTEEEEEETTEEEEEETT-TCCEEE--------EECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEET
T ss_pred             cCCCCCCCEEEEEeCCcEEEEECC-CCCEEE--------EecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEe
Confidence            4688  999887766778888998 555444        34456678899999999 77776543 2     24777777


Q ss_pred             cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933          294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  341 (497)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  341 (497)
                      .+++..    ++... ...      ............|+|+|+.|+..
T Consensus        76 ~~g~~~----~lt~~-~~~------~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          76 ENGEIK----RITYF-SGK------STGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             TTTEEE----ECCCC-CEE------EETTEECSEEEEECTTCCEEEEE
T ss_pred             cCCceE----Eeeec-CCC------ccCccccccccccCCCCCEEEEE
Confidence            776542    11110 000      00111345678999999998875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.014  Score=49.03  Aligned_cols=173  Identities=10%  Similarity=-0.015  Sum_probs=99.3

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-C--eEE
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVR  289 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~i~  289 (497)
                      ..+.++++..-+..|..+  ..+.|.+.+++ +.....+       .......+..++++|.. .+++..... +  .|.
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~  149 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVL-------FDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE  149 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecC-CceEEEE-------ecccccCCcEEEEeccc-CcEEEeecCCCCcEEE
Confidence            357788887766666554  77899999988 3333222       12223567899999987 565544332 2  344


Q ss_pred             EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeee-eeeccc
Q 010933          290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVAT-FKIHEH  366 (497)
Q Consensus       290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~-~~~~~~  366 (497)
                      --++......    .....             .-.....+++++.++.|...+.  +.|...++.  +..... +.+...
T Consensus       150 r~~~dG~~~~----~i~~~-------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~--g~~~~~v~~~~~~  210 (263)
T d1npea_         150 TSHMDGTNRR----ILAQD-------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--QPGRRKVLEGLQY  210 (263)
T ss_dssp             EEETTSCCCE----EEECT-------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEEEEECCCS
T ss_pred             EecCCCCCce----eeeee-------------cccccceEEEeecCcEEEEEeCCCCEEEEEECC--CCCeEEEECCCCC
Confidence            4455432211    11111             0134578999988887776643  888888886  333332 332222


Q ss_pred             ccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933          367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  433 (497)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~  433 (497)
                      +                .++++.  +.+|+ +-...+.|...|..+++.....++........+++.+
T Consensus       211 P----------------~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         211 P----------------FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             E----------------EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             c----------------EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            2                367775  44555 4446788989998887554333333334444554443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.56  E-value=0.011  Score=52.33  Aligned_cols=152  Identities=14%  Similarity=0.175  Sum_probs=92.3

Q ss_pred             EEEeC---CCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCC-cEEEEEeCCC------
Q 010933          219 SISNN---SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRG------  286 (497)
Q Consensus       219 ~~~~~---~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg------  286 (497)
                      .+++.   +||+++...  .+.+|-+.|++ ..++.+++.++      ....++.+...++.. .+++..+.+.      
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~-~fkt~kIi~iP------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECc-ceeeeEEEecC------CCCCCceeecccCCCeEEEEccCccccccCCC
Confidence            56664   489999886  79999999999 66676665332      334556666654331 4666655532      


Q ss_pred             ------------eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec---C-------
Q 010933          287 ------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---M-------  344 (497)
Q Consensus       287 ------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~-------  344 (497)
                                  .+.+.|..+.+...   ++. .              .+....+.++++|+++++.+.   .       
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~---QV~-V--------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~  223 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAW---QVL-V--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM  223 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEE---EEE-E--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             CccccchhhcceEEEEEecCCceEEE---Eee-e--------------CCChhccccCCCCCEEEEEeccccCCcchhhc
Confidence                        35667777655431   111 1              134678999999999888542   1       


Q ss_pred             ------eEEEEec-----------------------CC--CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC
Q 010933          345 ------NLKLWDI-----------------------RM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  393 (497)
Q Consensus       345 ------~i~lwd~-----------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  393 (497)
                            .+.+++.                       +.  ....+..+.....+                ..+.++|||+
T Consensus       224 ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsP----------------HGV~vSPDGK  287 (459)
T d1fwxa2         224 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKK  287 (459)
T ss_dssp             TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSC----------------CCEEECTTSS
T ss_pred             ccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCC----------------CceEECCCCC
Confidence                  2333332                       11  00111122222221                4799999999


Q ss_pred             EEEEEeC-CCcEEEEEcCC
Q 010933          394 HFATGSY-SNLLRIFSHGV  411 (497)
Q Consensus       394 ~l~s~~~-dg~i~vw~~~~  411 (497)
                      ++++++. +.++.|+|++.
T Consensus       288 yi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         288 HLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEEEECTTSSBEEEEEGGG
T ss_pred             EEEEeCCcCCcEEEEEehh
Confidence            9887665 89999999964

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.039  Score=46.16  Aligned_cols=203  Identities=12%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             CcceEEEEEcCCCCEEEEee-cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  110 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  110 (497)
                      ...+..++|.+..+.|.-.. .++.|+..++.+...                       ...+..-.            .
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-----------------------~~v~~~~~------------~   79 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----------------------TTIIRQDL------------G   79 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------------------EEEECTTC------------C
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-----------------------EEEEEecc------------c
Confidence            45677899998877776654 557788888766532                       11111111            3


Q ss_pred             ceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          111 KINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       111 ~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      .+.++++  +.-++.|..+ ...+.|.+.++.......+                                         
T Consensus        80 ~p~~iAv--D~~~~~lY~~d~~~~~I~~~~~dg~~~~~l-----------------------------------------  116 (263)
T d1npea_          80 SPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-----------------------------------------  116 (263)
T ss_dssp             CEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------------------------------------
T ss_pred             cccEEEE--eccCCeEEEeccCCCEEEEEecCCceEEEE-----------------------------------------
Confidence            4677887  4444555544 5667888888765432111                                         


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--c--CCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  265 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (497)
                                          ..........+++.|....+...  .  ...|..-+++ +.....+       ....-..
T Consensus       117 --------------------~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~~~~i-------~~~~~~~  168 (263)
T d1npea_         117 --------------------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRIL-------AQDNLGL  168 (263)
T ss_dssp             --------------------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEE-------ECTTCSC
T ss_pred             --------------------ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCCceee-------eeecccc
Confidence                                02223457788998877666654  2  2234444555 2222222       1122245


Q ss_pred             eEEEEEeCCCCcEEEEE-eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933          266 ITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  342 (497)
Q Consensus       266 i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--  342 (497)
                      ..++++++.+ +.|+.+ ...+.|...|+......    .++..              .....+|++.  +.+|...+  
T Consensus       169 P~glaiD~~~-~~lYw~d~~~~~I~~~~~~g~~~~----~v~~~--------------~~~P~~lav~--~~~lYwtd~~  227 (263)
T d1npea_         169 PNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWK  227 (263)
T ss_dssp             EEEEEEETTT-TEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETT
T ss_pred             cceEEEeecC-cEEEEEeCCCCEEEEEECCCCCeE----EEECC--------------CCCcEEEEEE--CCEEEEEECC
Confidence            6899999887 666555 45788999998764321    22222              0123467665  45555553  


Q ss_pred             cCeEEEEecCCCCceeeeee
Q 010933          343 YMNLKLWDIRMDSTPVATFK  362 (497)
Q Consensus       343 ~~~i~lwd~~~~~~~~~~~~  362 (497)
                      .+.|...|..+ ++.+..+.
T Consensus       228 ~~~I~~~~~~~-g~~~~~~~  246 (263)
T d1npea_         228 TNSVIAMDLAI-SKEMDTFH  246 (263)
T ss_dssp             TTEEEEEETTT-TEEEEEEC
T ss_pred             CCEEEEEECCC-CccceEEC
Confidence            38888888875 66555543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.97  E-value=0.11  Score=45.99  Aligned_cols=77  Identities=12%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             eEEEEEcCCCCEEEEeecC-CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933           35 VSAIEFDKTGDYLAVGDRG-GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  113 (497)
Q Consensus        35 I~~i~~sp~g~~lasg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~  113 (497)
                      ....++.++|++++.|+.+ ..+.+||..+..-                     .....+....            . -.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w---------------------~~~~~~~~~r------------~-~~  123 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW---------------------IPGPDMQVAR------------G-YQ  123 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE---------------------EECCCCSSCC------------S-SC
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcc---------------------cccccccccc------------c-cc
Confidence            3466788999999998755 5899999887532                     2122121111            1 12


Q ss_pred             EEEEEecCCCCEEEEEeCC------ccEEEeecCchheec
Q 010933          114 RVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKK  147 (497)
Q Consensus       114 ~l~~~~s~~~~~l~s~s~d------~~i~iw~~~~~~~~~  147 (497)
                      ..+.  .+|++.++.++.+      ..+.+||..+.+...
T Consensus       124 ~~~~--~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~  161 (387)
T d1k3ia3         124 SSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  161 (387)
T ss_dssp             EEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             ceee--ecCCceeeeccccccccccceeeeecCCCCceee
Confidence            2343  3688888888643      468889988776543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.081  Score=44.14  Aligned_cols=131  Identities=11%  Similarity=0.125  Sum_probs=91.3

Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933          268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  347 (497)
Q Consensus       268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~  347 (497)
                      +.-.+|.. +.||.-+ ...+.+||+++.+.+    +.+..              ...|.--.|-. .+.|+.-++..|+
T Consensus        67 sAIMhP~~-~IiALra-g~~LQiFnletK~kl----ks~~~--------------~e~VvfWkWis-~~~L~lVT~taVY  125 (327)
T d1utca2          67 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM--------------TDDVTFWKWIS-LNTVALVTDNAVY  125 (327)
T ss_dssp             EEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEEEC--------------SSCCCEEEESS-SSEEEEECSSEEE
T ss_pred             hhhcCCCC-cEEEEec-CCeEEEEehhHhhhh----ceEEc--------------CCCcEEEEecC-CCEEEEEcCCceE
Confidence            45577887 7777665 668999999987644    33333              24566677764 4567766778999


Q ss_pred             EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEe
Q 010933          348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRIFSHGVGSAGGITVE  420 (497)
Q Consensus       348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~i~vw~~~~~~~~~~~~~  420 (497)
                      -|+++.+..+.+.+..|....           -..|..-..+++.++++..|       -.|.+.+|.++.  ...+.++
T Consensus       126 HW~~~g~s~P~k~fdR~~~L~-----------~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er--~~sQ~ie  192 (327)
T d1utca2         126 HWSMEGESQPVKMFDRHSSLA-----------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIE  192 (327)
T ss_dssp             EEESSSSCCCEEEEECCGGGT-----------TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEEEC
T ss_pred             EEcccCCCCchhhhhhccccc-----------CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc--CcCcccc
Confidence            999976567888888777642           12235788889999877444       246789999885  4568899


Q ss_pred             ccCcceeeeEee
Q 010933          421 AGKNENRKPILQ  432 (497)
Q Consensus       421 ~~~~~v~~~~~~  432 (497)
                      +|...-..+.+.
T Consensus       193 Ghaa~F~~~~~~  204 (327)
T d1utca2         193 GHAASFAQFKME  204 (327)
T ss_dssp             CSEEEEEEECCT
T ss_pred             ceeeeeEEEEcC
Confidence            997765555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.57  E-value=0.2  Score=43.41  Aligned_cols=168  Identities=10%  Similarity=0.051  Sum_probs=91.5

Q ss_pred             eeEEEeCCCCCEEEEE-c------------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--eCCCCcEEEE
Q 010933          217 INSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAY  281 (497)
Q Consensus       217 v~~~~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~  281 (497)
                      .-++...|+|..++++ .            .|.|.++|+.........+...........-..+.+.+  .+++..+|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            3457778888777664 2            38899999874443333222111111111223345544  4455335555


Q ss_pred             Ee---CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec---------------
Q 010933          282 SS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---------------  343 (497)
Q Consensus       282 ~~---~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---------------  343 (497)
                      ..   ...+|.+|++..........+.+..            ......+.+++..+|.++++-..               
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~------------~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECC------------TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCC------------ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhc
Confidence            53   3567888887654322111122211            11245788999999988887310               


Q ss_pred             -CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCC
Q 010933          344 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS  413 (497)
Q Consensus       344 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~  413 (497)
                       +...+|.... +.......+...+                +.++++||+++|+.+. ..++|++|++....
T Consensus       185 ~~~g~v~~~~~-~~~~~~~~~l~~p----------------NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         185 LAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CCCEEEEEECS-SCEEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCceeEEEEcC-CceEEEcCCCCcc----------------ceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence             1334444432 2222222222221                6899999998776554 57899999997553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.49  E-value=0.25  Score=43.56  Aligned_cols=75  Identities=11%  Similarity=0.118  Sum_probs=48.5

Q ss_pred             ccccEEEEeeCCCEEEEEec--CeEEEEecCCCCc-------eeeeeeecccccccccccCCCCCccceeEEEEcCCCCE
Q 010933          324 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  394 (497)
Q Consensus       324 ~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  394 (497)
                      .....+.++|||++++++..  ..+.++|++.-..       +...+.+...            -..+-...+|+..|.-
T Consensus       275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e------------lglgPLht~fd~~g~a  342 (459)
T d1fwxa2         275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE------------LGLGPLHTAFDGRGNA  342 (459)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB------------CCSCEEEEEECTTSEE
T ss_pred             CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc------------cCcCccccccCCCceE
Confidence            34678999999999999853  9999999863111       1111111110            0111146788888865


Q ss_pred             EEEEeCCCcEEEEEcC
Q 010933          395 FATGSYSNLLRIFSHG  410 (497)
Q Consensus       395 l~s~~~dg~i~vw~~~  410 (497)
                      ..|---|..|.-|++.
T Consensus       343 ytslfids~v~kw~~~  358 (459)
T d1fwxa2         343 YTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEETTTTEEEEEEHH
T ss_pred             EEEeeccceEEEEecc
Confidence            5566679999999985

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.41  E-value=0.28  Score=43.20  Aligned_cols=79  Identities=15%  Similarity=0.117  Sum_probs=47.8

Q ss_pred             ceEEEEEcCCCCEEEEeecCC-----------eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cccCcccc
Q 010933           34 IVSAIEFDKTGDYLAVGDRGG-----------RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD  101 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~  101 (497)
                      ++.......+|+.++.|+.+.           .+.+||..++.-                     ...... ..|.    
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w---------------------~~~~~~~~~~~----   75 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV---------------------SDRTVTVTKHD----   75 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB---------------------CCCEEEECSCC----
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcE---------------------eecCCCCCCcc----
Confidence            334455567899998888431           367899887643                     111111 1121    


Q ss_pred             cccccccccceeEEEEEecCCCCEEEEEeCC-ccEEEeecCchheec
Q 010933          102 YLKSLEIEEKINRVRWCAAPNGSMFILSTND-KTIKLWKVRDQKVKK  147 (497)
Q Consensus       102 ~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d-~~i~iw~~~~~~~~~  147 (497)
                              ......++  .+++..++.++.+ ..+.+||..+.....
T Consensus        76 --------~~~~~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~  112 (387)
T d1k3ia3          76 --------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIP  112 (387)
T ss_dssp             --------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred             --------cceeEEEE--ecCCcEEEeecCCCcceeEecCccCcccc
Confidence                    11234456  5788888888644 689999988776543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.19  E-value=0.41  Score=42.99  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCEEEEee-----cCCeEEEEEecCCcc
Q 010933           34 IVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKN   66 (497)
Q Consensus        34 ~I~~i~~sp~g~~lasg~-----~dg~i~iwd~~~~~~   66 (497)
                      .+..+++||||+++|.+-     ....|+++|+.+++.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            445678899999998643     234799999998753

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.94  E-value=0.44  Score=41.13  Aligned_cols=151  Identities=9%  Similarity=0.085  Sum_probs=78.0

Q ss_pred             eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--eCCCCc-EEEEEeCCCeEEEEEccC---Ccccccccceeccc
Q 010933          236 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILRDA  309 (497)
Q Consensus       236 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~-~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~  309 (497)
                      .|.+|.+......+..+.........-...++.+++  ++.... ++++...+|.+..|.+..   +.......+.+.. 
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-
Confidence            677887763333333221110011111234667776  555313 456667789998887743   3233333344443 


Q ss_pred             ccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeee-eeec--ccccccccccCCCCCccceeE
Q 010933          310 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIH--EHLRPKLCDLYNNDSIFDKFE  385 (497)
Q Consensus       310 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~  385 (497)
                                   ...+-.|.+++....|+.+.+ ..|..+++......... +..-  ....            -++-.
T Consensus       179 -------------~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~------------~D~EG  233 (353)
T d1h6la_         179 -------------NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLT------------PDIEG  233 (353)
T ss_dssp             -------------SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCC------------SCEEE
T ss_pred             -------------CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCcccc------------CCccc
Confidence                         246888999998888888865 55555665432111111 1110  1111            01124


Q ss_pred             EEEc--CCCC-EEEEEe-CCCcEEEEEcCCC
Q 010933          386 CSVS--GDGL-HFATGS-YSNLLRIFSHGVG  412 (497)
Q Consensus       386 ~~~s--~~~~-~l~s~~-~dg~i~vw~~~~~  412 (497)
                      ++.-  .+++ ||++.+ .+++..|||....
T Consensus       234 laiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         234 LTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             cEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            4433  3333 555544 5789999998764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.85  E-value=0.39  Score=39.92  Aligned_cols=136  Identities=6%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             CCeeEEEeCCCCCEEEE-E---c----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC--CcEEEEEeC
Q 010933          215 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSS  284 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~  284 (497)
                      ..|..-..++++++++. |   .    .|.+.+|..+ . +..+.       +++|.+....+.+..+.  ..+|+.+..
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r-~~sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-R-KVSQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-T-TEEEE-------ECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-c-CcCcc-------ccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            45666677888888764 2   2    3678899988 2 33333       56776655555443221  123443322


Q ss_pred             ---CCeEEEEEccCCcccc-cc-cceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCcee
Q 010933          285 ---RGFVRLVDMRQSALCD-HS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  358 (497)
Q Consensus       285 ---dg~i~v~d~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~  358 (497)
                         .+++++.++.....-. .. .+..+. ...++.      -.+=-.+|..|+.-..+..-+. |.+.+||+.+ +.++
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi-~fppea------~~DFPvamqvs~kygiiyviTK~G~i~lyDleT-gt~i  290 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPEA------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI  290 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEEC-CCCTTC------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEE-ECCccc------cCCcEEEEEeeccCCEEEEEecCcEEEEEEccc-ccEE
Confidence               3678888886532110 00 011111 000000      0123456777876666666554 9999999998 8888


Q ss_pred             eeeeecccc
Q 010933          359 ATFKIHEHL  367 (497)
Q Consensus       359 ~~~~~~~~~  367 (497)
                      ..-+.....
T Consensus       291 ~~nRIs~~~  299 (327)
T d1utca2         291 YMNRISGET  299 (327)
T ss_dssp             EEEECCSSC
T ss_pred             EEeecCCCc
Confidence            777666554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.45  Score=39.42  Aligned_cols=165  Identities=7%  Similarity=0.003  Sum_probs=95.6

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe--CCCeEEE
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~v  290 (497)
                      ..+..+++.+.++.|..+  ..+.|.+.+++ +......       ..........++++|.. .+|....  ..+.|.-
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~-------~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEE-------EcCCCCCcceEEEEccc-CeEEEeccCCCcceeE
Confidence            456678888766666655  67899999988 4433332       22334567899999876 4555443  2446666


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccc
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLR  368 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~  368 (497)
                      .++......    .....             .-...+.+++++.++.|..++.  +.|...++.. ..............
T Consensus       148 ~~~dGs~~~----~l~~~-------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~  209 (266)
T d1ijqa1         148 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLA  209 (266)
T ss_dssp             EETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTS
T ss_pred             eccCCCcee----ccccc-------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCccc
Confidence            666543211    11111             1134678999998887777643  7888888863 22222222222110


Q ss_pred             ccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcceEEEecc
Q 010933          369 PKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEAG  422 (497)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~  422 (497)
                                .   ..++++.  +.+|. +-..++.|+..+..++... ..+...
T Consensus       210 ----------~---p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~-~~~~~~  248 (266)
T d1ijqa1         210 ----------H---PFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV-NLLAEN  248 (266)
T ss_dssp             ----------S---EEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC-EEEECS
T ss_pred             ----------c---cEEEEEE--CCEEEEEECCCCeEEEEECCCCcce-EEEEcC
Confidence                      0   0356665  34454 4456788888888877554 344433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.58  E-value=0.61  Score=40.17  Aligned_cols=73  Identities=5%  Similarity=-0.049  Sum_probs=43.7

Q ss_pred             CCCeeEEEeCCCCCEEEEE----cC------------CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCc
Q 010933          214 DFNINSISNNSDCETFVSA----DD------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  277 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~----~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  277 (497)
                      ....+++.+..++.++++-    .+            +...+|..+ .+.....       . ..-.....++++|++ +
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-~~~~~~~-------~-~~l~~pNGI~~s~d~-~  218 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PNDVRVV-------A-EGFDFANGINISPDG-K  218 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-SSCEEEE-------E-EEESSEEEEEECTTS-S
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-CCceEEE-------c-CCCCccceeEECCCC-C
Confidence            3456788888888777772    11            123344333 2222111       1 122456899999998 5


Q ss_pred             EEE-EEeCCCeEEEEEccCC
Q 010933          278 LLA-YSSSRGFVRLVDMRQS  296 (497)
Q Consensus       278 ~l~-~~~~dg~i~v~d~~~~  296 (497)
                      +|+ +-+..++|++|++...
T Consensus       219 ~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         219 YVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEEEGGGTEEEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEeCCC
Confidence            554 4456889999998754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.26  E-value=1.8  Score=38.84  Aligned_cols=60  Identities=17%  Similarity=0.107  Sum_probs=41.6

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCC-ccCCCCCCeEEEEEeCC
Q 010933          214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPI  274 (497)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~  274 (497)
                      -...++|+|.|+|+++++- ..|.|++++.. .+....+..+... ....-+.....++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3467899999999999988 68999999877 4444433332211 11233467889999996

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.06  E-value=3.4  Score=38.17  Aligned_cols=53  Identities=8%  Similarity=0.080  Sum_probs=36.6

Q ss_pred             EeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEE
Q 010933          331 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG  398 (497)
Q Consensus       331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~  398 (497)
                      +.-.+.++++|+ ||.++.+|.++ ++.+.+++.......              .-+.+..+|+ ||+..
T Consensus       465 l~TagglVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~~~~--------------~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         465 LSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQSGIVA--------------APMTFELAGRQYVAIM  519 (560)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------CCEEEEETTEEEEEEE
T ss_pred             eEECCCEEEEECCCCcEEEEECCC-CcEeEEEECCCCccc--------------cCEEEEECCEEEEEEE
Confidence            344566777775 59999999997 999998876654321              2366767885 55543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=2.1  Score=35.06  Aligned_cols=159  Identities=10%  Similarity=0.015  Sum_probs=93.1

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCce--eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933          215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  290 (497)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v  290 (497)
                      ..+..++|.+.++.+.-.  ..+.|+..++.....  ....+      .......+..+++++.+.++..+-...+.|.+
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~------~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v  103 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEE------EeCCCCCcceEEEeeccceEEEEecCCCEEEe
Confidence            356788998877777665  677777776652111  11111      12223456788998876344444456788999


Q ss_pred             EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec---CeEEEEecCCCCceeeeeeecccc
Q 010933          291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                      .++......    .....             .......++++|...+|...+.   +.|.-.++.  +.....+-.....
T Consensus       104 ~~~~g~~~~----~~~~~-------------~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l~~~~~~  164 (266)
T d1ijqa1         104 ADTKGVKRK----TLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQ  164 (266)
T ss_dssp             EETTSSSEE----EEEEC-------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEECSSCS
T ss_pred             EecCCceEE----EEEcC-------------CCCCcceEEEEcccCeEEEeccCCCcceeEeccC--CCceecccccccc
Confidence            998765321    11111             1234688999987666665432   456555654  5444444322111


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVG  412 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~~  412 (497)
                      .              ..++++.+.++.|+.+ ...+.|...++...
T Consensus       165 ~--------------p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         165 W--------------PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             C--------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             e--------------eeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            0              1589999887777655 55788988898654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.15  E-value=1.3  Score=41.27  Aligned_cols=55  Identities=13%  Similarity=0.111  Sum_probs=41.5

Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      |.+.-||+.+ ++.+.+.+......                .=..+-.+.+|++|+.||.++.+|.++|+.+
T Consensus       457 G~l~AiD~~t-Gk~~W~~~~~~p~~----------------gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVA-QKAAWSVEHVSPWN----------------GGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTT-TEEEEEEEESSSCC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCC-CceEeeecCCCCCC----------------CceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            7888999987 88888776554321                2223346778999999999999999999665

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.59  E-value=4.4  Score=36.12  Aligned_cols=34  Identities=9%  Similarity=0.204  Sum_probs=27.4

Q ss_pred             CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCc
Q 010933           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (497)
Q Consensus        32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~   65 (497)
                      -+.-++|+|.|||++|++--.+|.|++++..++.
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            3566899999999988876557999999877664

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.61  E-value=3  Score=32.43  Aligned_cols=153  Identities=14%  Similarity=0.063  Sum_probs=85.7

Q ss_pred             CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC--CCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEE
Q 010933          216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV  291 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~  291 (497)
                      .|.+++.. +.+...+| ......+|-++ +++..+..++++-.+.  -..+-|..+.+-.-++.-|.++.. .|.++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYvie-gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALD-GGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEe-CCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            34455543 33455567 77788888888 7777777655543221  122445555544333244555655 7777777


Q ss_pred             EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ec-C--eEEEEecCCCCceeeeeeecccc
Q 010933          292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-M--NLKLWDIRMDSTPVATFKIHEHL  367 (497)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~-~--~i~lwd~~~~~~~~~~~~~~~~~  367 (497)
                      +...|                            .++...+++..+. +++ .. |  ...-+|++. ++ ...+.-....
T Consensus       183 tpkeG----------------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s-~~-yerve~P~kd  231 (313)
T d2hu7a1         183 DSGEG----------------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRD-GS-VEDLELPSKD  231 (313)
T ss_dssp             CCSSE----------------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTT-CC-EEECCCSSCH
T ss_pred             cCCCC----------------------------cccceeEccCcee-eeccCCCCceEEEEEeccc-Cc-eeeeecCccc
Confidence            76543                            4566666765555 443 21 3  233457764 22 2222221111


Q ss_pred             cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933          368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  408 (497)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~  408 (497)
                      ..    .|+.-.   ++-+-+.|++++++.+-.||.-++|.
T Consensus       232 ~~----sy~p~~---I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         232 FS----SYRPTA---ITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             HH----HHCCSE---EEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ce----eecceE---EEeeeeCCCCcEEEEEecCCchheee
Confidence            00    011111   13466899999999999999999997

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.47  E-value=6.6  Score=36.19  Aligned_cols=55  Identities=9%  Similarity=-0.015  Sum_probs=39.6

Q ss_pred             CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933          344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  415 (497)
Q Consensus       344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~  415 (497)
                      |.|.-+|+.+ ++.+.+........                +-..+-.+.++++|+.||.++-+|.++|+.+
T Consensus       444 G~l~AiD~~T-G~~~W~~~~~~~~~----------------~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         444 GQIRAFDLTT-GKAKWTKWEKFAAW----------------GGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCCC----------------SBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeccCC-CceeeEcCCCCCCC----------------cceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence            7899999987 88877765433221                1122224668888999999999999999766

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.16  E-value=7  Score=36.00  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCeEEEEEccCCccc
Q 010933          277 NLLAYSSSRGFVRLVDMRQSALC  299 (497)
Q Consensus       277 ~~l~~~~~dg~i~v~d~~~~~~~  299 (497)
                      .++++++.||.++-+|.++|+.+
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEE
Confidence            57888999999999999999865

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.90  E-value=4.1  Score=31.61  Aligned_cols=158  Identities=11%  Similarity=0.101  Sum_probs=87.9

Q ss_pred             cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933          110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  189 (497)
Q Consensus       110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (497)
                      -+|.++++   .+....++|+......+|-+++|++..+...+.-..|.++.                ..+++..++..+
T Consensus       104 vRI~S~~y---ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----------------~d~I~G~g~~~g  164 (313)
T d2hu7a1         104 MRILSGVD---TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----------------GDLIAGLGFFGG  164 (313)
T ss_dssp             BEEEEEEE---CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----------------TTEEEEEEEEET
T ss_pred             EEEEEeee---cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----------------CCeEEEEeeecC
Confidence            35777777   56667788888888999999999987766554433222221                122222222222


Q ss_pred             cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCceeeEEeecCCCccCCC-CC
Q 010933          190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TE  264 (497)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~  264 (497)
                      +...++-.+-.  ...++.+ ....+.++...+.+..+. +++    .+....-+|++ .+ .+..++++...+... .-
T Consensus       165 ~~~sfF~adl~--SG~lri~-tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~-s~-~yerve~P~kd~~sy~p~  238 (313)
T d2hu7a1         165 GRVSLFTSNLS--SGGLRVF-DSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPR-DG-SVEDLELPSKDFSSYRPT  238 (313)
T ss_dssp             TEEEEEEEETT--TEEEEEE-CCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTT-TC-CEEECCCSSCHHHHHCCS
T ss_pred             CcceEEEEecc--cCCEEEe-cCCCCcccceeEccCcee-eeccCCCCceEEEEEecc-cC-ceeeeecCcccceeecce
Confidence            22222221110  1123333 555667887778887766 554    23333355766 22 233322221111111 13


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDM  293 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~  293 (497)
                      .|+-+-+.|++ ++++.+-.||.-++|+-
T Consensus       239 ~I~~~~Y~Pdd-~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         239 AITWLGYLPDG-RLAVVARREGRSAVFID  266 (313)
T ss_dssp             EEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred             EEEeeeeCCCC-cEEEEEecCCchheeec
Confidence            35556689999 88899999999999874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.27  E-value=6.2  Score=36.39  Aligned_cols=25  Identities=8%  Similarity=-0.023  Sum_probs=21.8

Q ss_pred             CCCcEEEEEeCCCeEEEEEccCCccc
Q 010933          274 IYCNLLAYSSSRGFVRLVDMRQSALC  299 (497)
Q Consensus       274 ~~~~~l~~~~~dg~i~v~d~~~~~~~  299 (497)
                      .+ .++++++.||.++.+|.++|+.+
T Consensus       487 ag-glVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         487 AG-NVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             TT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cC-CEEEEECCCCeEEEEECCCCcEe
Confidence            45 68888999999999999999865

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.93  E-value=13  Score=31.83  Aligned_cols=119  Identities=12%  Similarity=0.086  Sum_probs=66.6

Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC
Q 010933          265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  344 (497)
Q Consensus       265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~  344 (497)
                      ...-+++++.. .+++.|+.++ +.|..+..-+      +.++. ........ .......|..++|+  +..|++...+
T Consensus        38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~------~~~~~-~~~~~~~~-~~~~ip~v~~vafs--~d~l~v~~~~  105 (381)
T d1xipa_          38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLR------DHITS-DSTPLTFK-WEKEIPDVIFVCFH--GDQVLVSTRN  105 (381)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHH------HHHHS-SSCCCCCS-EEEECTTEEEEEEE--TTEEEEEESS
T ss_pred             ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHH------HHhhc-cCCCCcce-eccCCCCeEEEEee--CCEEEEEeCC
Confidence            44567888876 7888888775 6676654321      01110 00000000 01112357888887  4467777778


Q ss_pred             eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933          345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  413 (497)
Q Consensus       345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~  413 (497)
                      .+..++... -............               +.++.+.|.  .++....+|.+.++++..+.
T Consensus       106 ~l~~~~~~~-l~~~~~~~~~~~~---------------~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~  156 (381)
T d1xipa_         106 ALYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVNN--TLVILNSVNDLSALDLRTKS  156 (381)
T ss_dssp             EEEEEESSS-TTCEEEEEECSSC---------------EEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEeec-ccccccccccccc---------------ccceecCCc--eeEEEecCCCEEEEEeccCc
Confidence            888888764 2222222211111               146777664  56777788999999998874

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.49  E-value=14  Score=31.72  Aligned_cols=103  Identities=10%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933          216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  295 (497)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~  295 (497)
                      .|..++|+.+  .++...++.+..++..........        .....++..+.+.|.   .++....++.+.++++..
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~--------~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~  154 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTV--------TSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRT  154 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEE--------EECSSCEEEEEECSS---EEEEEETTSEEEEEETTT
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeecccccccc--------ccccccccceecCCc---eeEEEecCCCEEEEEecc
Confidence            5778888744  566666667888887743332221        123456788888775   467777899999999987


Q ss_pred             CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933          296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  343 (497)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  343 (497)
                      ++..    ....+ ...      +. -.+...+++|++.|+.++++..
T Consensus       155 ~~~~----~~~~~-v~~------~~-~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         155 KSTK----QLAQN-VTS------FD-VTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             CCEE----EEEES-EEE------EE-ECSSEEEEEETTSCEEEEEEET
T ss_pred             Cccc----cccCC-cce------EE-ecCCceEEEEeCCcEEEEEeCC
Confidence            6432    11111 000      00 0134667777777776666643