Citrus Sinensis ID: 010945

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------

MAALSNFSFSLSTSPPTFVSSSKTLKLLTSLTKKPSFRLKSRAFAATCSLHSASATTNPPTAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRLKDLGLVGEQGDIIFWEPK

ccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHcccccccccEEEccccccEEEEEccccccccEEEEcccccccccccccccHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccEEEEEEccccccccEEEEcccccccHHHHHHHcccccccccccEEEEEEccccccccHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

cccEEEEcccccccccHHcccccccHHHHcccccccHHHcccccHHHccccccccccccccHHHHHHHHHHHHcccccccEEEEEcccccccEEEEEcccccccEEEEEcHHcEEcHHHHcccHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHccccccccEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccEEEEHHHHcccccccEEEEcccccccccccccccEEEEEEccccccccEEEEEccccccHHHHHHHcccEcccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccEEEEccc

maalsnfsfslstspptfvsssktLKLLTsltkkpsfrlkSRAFAATCslhsasattnpptaQVETFWQWLRdqkvvspkspirpatfpeglglvaqrdiaknEVVLEVpmkfwinpdtvAASEIGSLCSGLKPWISVALFLIREkkkedspwrvyldilpectdstvfWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEiilpnkqlfprpitlDDFLWAFGILRSRAFSRlrgqnlvlipladlinhspgittedYAYEIKGAGLFSRDLLFslrtpvpvkagEQVLIQYDLNKSNAELALdygfiesksdrnaYTLTleisesdpffgdkldiaetnglgesayfDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNtiwghldlpvshanEELICRVVRDACKSAlsgfhttieedeqllqggnldprlRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRLkdlglvgeqgdiifwepk

maalsnfsfslstspptfvsssktLKLLtsltkkpsfrLKSRAFAATCSlhsasattnpptAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREkkkedspwrvYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEisesdpffgDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTieedeqllqggnldpRLRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQErrlkdlglvgeqgdiifwepk

MAAlsnfsfslstspptfvsssktlklltsltkkPSFRLKSRAFAATCSLHSASATTNPPTAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVElqgtqllsttlgVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKereleldeleyyqerrlKDLGLVGEQGDIIFWEPK

******************************************AFAATCSL***********AQVETFWQWLRDQKVVSPK*PIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRLKDLGLVGEQGDIIFW***

********F*********************************************************FWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTI*****LPVSHANEELICRVVRDACKSALSGFHTTIE************PRLRIAVGVRAGEKRVLQQIDEIFKEREL**********************GD*IFW***

**********************KTLKLLTSLTKKPSFRLKSRAFAATCSLHSASATTNPPTAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRLKDLGLVGEQGDIIFWEPK

*AALSNFSFSLSTSPPTFVSSSKTLKLLTSLTKKPS***********************PTAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRLKDLGLVGEQGDIIFWEPK

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		497	2.2.26 [Sep-21-2011]
Q9XI84		482	[Fructose-bisphosphate al	yes	no	0.931	0.960	0.766	0.0
P94026		491	Ribulose-1,5 bisphosphate	N/A	no	0.873	0.883	0.756	0.0
Q43088		489	Ribulose-1,5 bisphosphate	N/A	no	0.955	0.971	0.665	0.0
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.704	0.595	0.291	5e-29
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.704	0.588	0.294	8e-29
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.704	0.589	0.286	1e-28
Q91WC0		594	Histone-lysine N-methyltr	yes	no	0.766	0.641	0.286	1e-28
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.704	0.588	0.286	2e-28
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.704	0.588	0.291	2e-28
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.704	0.588	0.291	1e-27

>sp\|Q9XI84\|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1	Back alignment and function desciption

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/466 (76%), Positives = 400/466 (85%), Gaps = 3/466 (0%)

Query: 32  TKKPSFRLKSRAFAATCSLHSASATTNPPTAQVETFWQWLRDQKVVSPKSPIRPATFPEG 91
           ++ PSF L SR   +     SAS++  P    V  FW+WLRDQ VVS KS   PA  PEG
Sbjct: 20  SQNPSF-LFSRPKKSLVRPISASSSELP--ENVRNFWKWLRDQGVVSGKSVAEPAVVPEG 76

Query: 92  LGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDS 151
           LGLVA+RDI +NEVVLE+P + WINP+TV AS+IG LC GLKPW+SVALFLIREK +E+S
Sbjct: 77  LGLVARRDIGRNEVVLEIPKRLWINPETVTASKIGPLCGGLKPWVSVALFLIREKYEEES 136

Query: 152 PWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQ 211
            WRVYLD+LP+ TDSTVFWSEEEL EL+GTQLLSTTLGVKEYV+NE+LK+E+EI+LPNK 
Sbjct: 137 SWRVYLDMLPQSTDSTVFWSEEELAELKGTQLLSTTLGVKEYVENEFLKLEQEILLPNKD 196

Query: 212 LFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGL 271
           LF   ITLDDF+WAFGIL+SRAFSRLRGQNLVLIPLADLINH+P I TEDYAYEIKGAGL
Sbjct: 197 LFSSRITLDDFIWAFGILKSRAFSRLRGQNLVLIPLADLINHNPAIKTEDYAYEIKGAGL 256

Query: 272 FSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESD 331
           FSRDLLFSL++PV VKAGEQV IQYDLNKSNAELALDYGF+ES   RN+YTLT+EI ESD
Sbjct: 257 FSRDLLFSLKSPVYVKAGEQVYIQYDLNKSNAELALDYGFVESNPKRNSYTLTIEIPESD 316

Query: 332 PFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWG 391
           PFFGDKLDIAE+N +GE+ YFDIV G+TLP  MLQYLRLVALGG DAFLLESIF NTIWG
Sbjct: 317 PFFGDKLDIAESNKMGETGYFDIVDGQTLPAGMLQYLRLVALGGPDAFLLESIFNNTIWG 376

Query: 392 HLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEK 451
           HL+LPVS  NEELICRVVRDACKSALSGF TTIEEDE+LL  G L+PRL +A+ +R GEK
Sbjct: 377 HLELPVSRTNEELICRVVRDACKSALSGFDTTIEEDEKLLDKGKLEPRLEMALKIRIGEK 436

Query: 452 RVLQQIDEIFKERELELDELEYYQERRLKDLGLVGEQGDIIFWEPK 497
           RVLQQID+IFK+RELELD LEYYQERRLKDLGLVGEQGDIIFWE K
Sbjct: 437 RVLQQIDQIFKDRELELDILEYYQERRLKDLGLVGEQGDIIFWETK 482

Methylates 'Lys-14' of the large subunit of RuBisCO.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7

>sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1	Back alignment and function description

>sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|Q91WC0\|SETD3_MOUSE Histone-lysine N-methyltransferase setd3 OS=Mus musculus GN=Setd3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		497
225462926		484	PREDICTED: probable ribulose-1,5 bisphos	0.937	0.962	0.778	0.0
255562948		502	Ribulose-1,5 bisphosphate carboxylase/ox	0.965	0.956	0.741	0.0
147843303		507	hypothetical protein VITISV_015206 [Viti	0.921	0.903	0.779	0.0
297849804		482	hypothetical protein ARALYDRAFT_471564 [	0.893	0.921	0.788	0.0
15223054		482	[ribulose-bisphosphate carboxylase]-lysi	0.931	0.960	0.766	0.0
224098926		490	SET domain-containing protein [Populus t	0.947	0.961	0.732	0.0
449442309		503	PREDICTED: ribulose-1,5 bisphosphate car	0.875	0.864	0.757	0.0
17368377		491	RecName: Full=Ribulose-1,5 bisphosphate	0.873	0.883	0.756	0.0
449495943		503	PREDICTED: ribulose-1,5 bisphosphate car	0.875	0.864	0.755	0.0
8778402		474	F16A14.25 [Arabidopsis thaliana]	0.915	0.959	0.723	0.0

>gi\|225462926\|ref\|XP_002267249.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Vitis vinifera] gi\|296087793\|emb\|CBI35049.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/470 (77%), Positives = 412/470 (87%), Gaps = 4/470 (0%)

Query: 28  LTSLTKKPSFRLKSRAFAATCSLHSASATTNPPTAQVETFWQWLRDQKVVSPKSPIRPAT 87
           + +L   P    +   F+ TC     S  TNPP   V+TFW+WL DQ VVS K+P++P  
Sbjct: 19  IKTLKNPPIIHSRRPPFSLTCL---RSLETNPPPP-VQTFWKWLFDQGVVSGKTPVKPGI 74

Query: 88  FPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKK 147
            PEGLGLVAQRDIA+NE VLEVP +FWINPD VAASEIGS+C GLKPW+SVALFLIREK 
Sbjct: 75  VPEGLGLVAQRDIARNEAVLEVPKRFWINPDAVAASEIGSVCGGLKPWVSVALFLIREKL 134

Query: 148 KEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIIL 207
           +++SPWR YLDILPE T+ST++WSEEELVE+QGTQL +TTLGVKEYVQ+E+LKVEEE+IL
Sbjct: 135 RDESPWRSYLDILPEYTNSTIYWSEEELVEIQGTQLSNTTLGVKEYVQSEFLKVEEEVIL 194

Query: 208 PNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIK 267
           P+ QLFP P+TLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSP ITTE+YA+EIK
Sbjct: 195 PHSQLFPFPVTLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPSITTEEYAWEIK 254

Query: 268 GAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEI 327
           GAGLFSRD LFSLRTPV VKAGEQVLIQYDL+KSNAELALDYGFIES+ +RN+YTLTLEI
Sbjct: 255 GAGLFSRDQLFSLRTPVSVKAGEQVLIQYDLDKSNAELALDYGFIESRPNRNSYTLTLEI 314

Query: 328 SESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRN 387
           SESDPFFGDKLDIAE+NGL E AYFDIVLG++LP AML YLRLVALGG DAFLLESIFRN
Sbjct: 315 SESDPFFGDKLDIAESNGLSEIAYFDIVLGQSLPAAMLPYLRLVALGGPDAFLLESIFRN 374

Query: 388 TIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVR 447
           TIWGHL+LPVS ANEELIC+V++DACKSALSG+ TTIEEDE+L + GNL PRL IAVGVR
Sbjct: 375 TIWGHLELPVSRANEELICQVIQDACKSALSGYLTTIEEDEKLKEEGNLHPRLEIAVGVR 434

Query: 448 AGEKRVLQQIDEIFKERELELDELEYYQERRLKDLGLVGEQGDIIFWEPK 497
            GEK+VLQQID IF+ERE ELD+LEYYQERRLKDLGL GEQG+IIFWE K
Sbjct: 435 TGEKKVLQQIDGIFRERERELDQLEYYQERRLKDLGLCGEQGEIIFWESK 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255562948\|ref\|XP_002522479.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] gi\|223538364\|gb\|EEF39971.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147843303\|emb\|CAN82664.1\| hypothetical protein VITISV_015206 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297849804\|ref\|XP_002892783.1\| hypothetical protein ARALYDRAFT_471564 [Arabidopsis lyrata subsp. lyrata] gi\|297338625\|gb\|EFH69042.1\| hypothetical protein ARALYDRAFT_471564 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15223054|ref|NP_172856.1| [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase [Arabidopsis thaliana] gi|17369870|sp|Q9XI84.1|RBCMT_ARATH RecName: Full=[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; AltName: Full=Aldolases N-methyltransferase; AltName: Full=[Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase-like; Short=AtLSMT-L; Short=LSMT-like enzyme; Flags: Precursor gi|5080779|gb|AAD39289.1|AC007576_12 Putative ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Arabidopsis thaliana] gi|28973755|gb|AAO64193.1| putative ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase [Arabidopsis thaliana] gi|332190979|gb|AEE29100.1| [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224098926\|ref\|XP_002311320.1\| SET domain-containing protein [Populus trichocarpa] gi\|222851140\|gb\|EEE88687.1\| SET domain-containing protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449442309\|ref\|XP_004138924.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|17368377|sp|P94026.1|RBCMT_TOBAC RecName: Full=Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; AltName: Full=[Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase; Short=RuBisCO LSMT; Short=RuBisCO methyltransferase; Short=rbcMT; Flags: Precursor gi|1731475|gb|AAC49565.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Nicotiana tabacum] gi|1731477|gb|AAC49566.1| ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Nicotiana tabacum]

Back alignment and taxonomy information

>gi\|449495943\|ref\|XP_004159992.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|8778402\|gb\|AAF79410.1\|AC068197_20 F16A14.25 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		497
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.925	0.954	0.714	4.9e-172
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.710	0.593	0.283	1.3e-25
UNIPROTKB\|E2RBS6		588	SETD3 "Histone-lysine N-methyl	0.714	0.603	0.282	3.2e-25
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.710	0.594	0.280	3.3e-25
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.710	0.593	0.280	3.3e-25
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.710	0.593	0.280	3.3e-25
MGI\|MGI:1289184		594	Setd3 "SET domain containing 3	0.710	0.594	0.280	5.9e-25
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.758	0.748	0.271	7.5e-25
UNIPROTKB\|C1FXW2		589	SETD3 "Histone-lysine N-methyl	0.706	0.595	0.282	1.4e-24
UNIPROTKB\|G3V6U9		596	Setd3 "Protein Setd3" [Rattus	0.710	0.592	0.280	2e-24

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
 Identities = 331/463 (71%), Positives = 370/463 (79%)

Query:    35 PSFRLKSRAFAATCSLHSASATTNPPTAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGL 94
             PSF L SR   +     SAS++  P    V  FW+WLRDQ VVS KS   PA  PEGLGL
Sbjct:    23 PSF-LFSRPKKSLVRPISASSSELPEN--VRNFWKWLRDQGVVSGKSVAEPAVVPEGLGL 79

Query:    95 VAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALFLIREKKKEDSPWR 154
             VA+RDI +NEVVLE+P + WINP+TV AS+IG LC GLKPW+SVALFLIREK +E+S WR
Sbjct:    80 VARRDIGRNEVVLEIPKRLWINPETVTASKIGPLCGGLKPWVSVALFLIREKYEEESSWR 139

Query:   155 VYLDILPECTDSTVFWSEEELVEXXXXXXXXXXXXVKEYVQNEYLKVEEEIILPNKQLFP 214
             VYLD+LP+ TDSTVFWSEEEL E            VKEYV+NE+LK+E+EI+LPNK LF 
Sbjct:   140 VYLDMLPQSTDSTVFWSEEELAELKGTQLLSTTLGVKEYVENEFLKLEQEILLPNKDLFS 199

Query:   215 RPITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSR 274
               ITLDDF+WAFGIL+SRAFSRLRGQNLVLIPLADLINH+P I TEDYAYEIKGAGLFSR
Sbjct:   200 SRITLDDFIWAFGILKSRAFSRLRGQNLVLIPLADLINHNPAIKTEDYAYEIKGAGLFSR 259

Query:   275 DLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFF 334
             DLLFSL++PV VKAGEQV IQYDLNKSNAELALDYGF+ES   RN+YTLT+EI ESDPFF
Sbjct:   260 DLLFSLKSPVYVKAGEQVYIQYDLNKSNAELALDYGFVESNPKRNSYTLTIEIPESDPFF 319

Query:   335 GDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLD 394
             GDKLDIAE+N +GE+ YFDIV G+TLP  MLQYLRLVALGG DAFLLESIF NTIWGHL+
Sbjct:   320 GDKLDIAESNKMGETGYFDIVDGQTLPAGMLQYLRLVALGGPDAFLLESIFNNTIWGHLE 379

Query:   395 LPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVL 454
             LPVS  NEELICRVVRDACKSALSGF TTIEEDE+LL  G L+PRL +A+ +R GEKRVL
Sbjct:   380 LPVSRTNEELICRVVRDACKSALSGFDTTIEEDEKLLDKGKLEPRLEMALKIRIGEKRVL 439

Query:   455 QQIDEIFKXXXXXXXXXXXXXXXXXKDLGLVGEQGDIIFWEPK 497
             QQID+IFK                 KDLGLVGEQGDIIFWE K
Sbjct:   440 QQIDQIFKDRELELDILEYYQERRLKDLGLVGEQGDIIFWETK 482

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030785 "[ribulose-bisphosphate carboxylase

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RBS6 SETD3 "Histone-lysine N-methyltransferase setd3" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

MGI\|MGI:1289184 Setd3 "SET domain containing 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|C1FXW2 SETD3 "Histone-lysine N-methyltransferase setd3" [Dasypus novemcinctus (taxid:9361)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6U9 Setd3 "Protein Setd3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43088	RBCMT_PEA	2, ., 1, ., 1, ., 1, 2, 7	0.6652	0.9557	0.9713	N/A	no
Q9XI84	RBCMT_ARATH	2, ., 1, ., 1, ., 1, 2, 7	0.7660	0.9315	0.9605	yes	no
P94026	RBCMT_TOBAC	2, ., 1, ., 1, ., 1, 2, 7	0.7563	0.8732	0.8839	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.127	0.991
3rd Layer	2.1.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		497
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	4e-42
smart00317		124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	1e-04

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

 Score =  145 bits (369), Expect = 4e-42
 Identities = 52/128 (40%), Positives = 75/128 (58%)

Query: 327 ISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFR 386
           +S SDP + DKL + E NGL E+  F + +       +L YLRL+ L   +    +S+  
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSWELLAYLRLLCLSDEELTAWKSVLL 60

Query: 387 NTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGV 446
             + GH + P+S  NEE   + +   CK  LS + TT+EEDE LL+ GNL  +LR+AV +
Sbjct: 61  GAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEEDEALLKKGNLSEQLRLAVRL 120

Query: 447 RAGEKRVL 454
           R GEKR+L
Sbjct: 121 RLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128

>gnl\|CDD\|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		497
KOG1337		472	consensus N-methyltransferase [General function pr	100.0
KOG1338		466	consensus Uncharacterized conserved protein [Funct	100.0
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.82
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.68
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.58
KOG2589		453	consensus Histone tail methylase [Chromatin struct	94.1
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	93.77
KOG1085		392	consensus Predicted methyltransferase (contains a	93.52
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	84.27
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	83.78
KOG1083		1306	consensus Putative transcription factor ASH1/LIN-5	80.71

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.7e-37  Score=331.05  Aligned_cols=403  Identities=32%  Similarity=0.434  Sum_probs=312.1

Q ss_pred             ccchHHHHHHHhhCCCCCCCCCeeecccCCceEEEEccCCCCCcEEEEecCCcccCccccccchhhhhhcCCCch-HHHH
Q 010945           61 TAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPW-ISVA  139 (497)
Q Consensus        61 ~~~~~~f~~Wl~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~~~l~~~~~~l~~~-~~La  139 (497)
                      ....+.+.-|.+..|....+. ........++++.+..++..++.+..+|....+..+....         .... ..++
T Consensus        46 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~  115 (472)
T KOG1337|consen   46 SENIKSLKFWLTGNGLSSSKS-SLPGNDIDEWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPY---------NDLLPIALA  115 (472)
T ss_pred             ccccccceeccccCCcchhhh-ccccccccccchhhhhhhhhhhhhccCCchhhhccccccC---------ccccHHHHH
Confidence            356677777777777765541 1122222466666666666666666666665555443321         1111 5899


Q ss_pred             HHHHHHh-cCCCCCcHHHHhhcCCCCCCcccCCHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----
Q 010945          140 LFLIREK-KKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFP----  214 (497)
Q Consensus       140 l~Ll~E~-~~~~S~W~pYl~~LP~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~----  214 (497)
                      ++|++|. .+..|.|+||+..||+.+++|++|..+++..|++++....+..+++.++..+..+.+ +...++..++    
T Consensus       116 ~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  194 (472)
T KOG1337|consen  116 LFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLFGSDLF  194 (472)
T ss_pred             HHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhcccccccccc
Confidence            9999999 666799999999999999999999999999999999999888777777765555443 3444444442    


Q ss_pred             CCCCHHHHHHHHHHHHhcCcccCC---------CCceEEeeccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCC
Q 010945          215 RPITLDDFLWAFGILRSRAFSRLR---------GQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVP  285 (497)
Q Consensus       215 ~~~t~~~f~WA~~iv~SRaf~~~~---------g~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~  285 (497)
                      ..+|+++|.||++++.||+|+...         .+..+|+|++||+||++...         ..+++..++.+.+++.++
T Consensus       195 d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~---------~~~~~~~d~~~~l~~~~~  265 (472)
T KOG1337|consen  195 DTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVI---------KAGYNQEDEAVELVAERD  265 (472)
T ss_pred             CccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhc---------cccccCCCCcEEEEEeee
Confidence            237999999999999999997532         23579999999999999762         123444566899999999


Q ss_pred             CCCCCEEEeccCCCCChHHHHHhCCCCCCCCCCCeEEEEeecCCCCcChhcHHHHHHHCCCCCceEEEeecCCCCCHHHH
Q 010945          286 VKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAML  365 (497)
Q Consensus       286 i~~GeEv~i~YG~~~sN~~LL~~YGFv~~~N~~D~v~l~l~~~~~d~~~~~k~~il~~~gl~~~~~f~i~~~~~~~~~ll  365 (497)
                      |++||||||+||+ ++|.+||++|||+.++||+|.|.+.+.++..|+.+..|.+.+..+++.....|.+...+....++.
T Consensus       266 v~~geevfi~YG~-~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (472)
T KOG1337|consen  266 VSAGEEVFINYGP-KSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEML  344 (472)
T ss_pred             ecCCCeEEEecCC-CchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhh
Confidence            9999999999997 999999999999999999999999999999999999999999999999999998877655555555


Q ss_pred             HHHHHHhcCCCcH--HHHHH---HHhccccCCCCCCCChhhHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHcCCCCChh
Q 010945          366 QYLRLVALGGTDA--FLLES---IFRNTIWGHLDLPVSHANEELICRVVRDA-CKSALSGFHTTIEEDEQLLQGGNLDPR  439 (497)
Q Consensus       366 ~~lRl~~~~~~e~--~~l~~---~~~~~~~g~~~~p~s~~nE~~~~~~L~~~-~~~~L~~y~tTieeD~~~L~~~~~~~r  439 (497)
                      ...++..+.....  ..+..   ..+...+.....+++.++|..++..+... |...+..+.++++++...+.+..++.+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l~~~  424 (472)
T KOG1337|consen  345 LLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNILSKL  424 (472)
T ss_pred             hhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcccccchh
Confidence            5444333333222  11111   22223344456788999999999999988 888899999999999999988778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhccccCC
Q 010945          440 LRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRLKDLGL  484 (497)
Q Consensus       440 ~~~A~~~R~~EK~IL~~~~~~l~~~~~~l~~~~~~~~r~~~~~~~  484 (497)
                      ..++..++..+|+||++.+..+..+...+..+.|+|.+.++.+..
T Consensus       425 ~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~  469 (472)
T KOG1337|consen  425 LELLEKLRTLEKRILEKSLKLLRSRLKLLHSLEYNQARLLQSLKS  469 (472)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhhhhcccccccchhhhhhhhh
Confidence            999999999999999999999998889999999999998776543

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		497
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		1e-169
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		1e-169
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		9e-26
3qxy_A		449	Human Setd6 In Complex With Rela Lys310 Length = 44		4e-04

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Iteration: 1

Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust. Identities = 284/430 (66%), Positives = 346/430 (80%), Gaps = 2/430 (0%) Query: 64 VETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAAS 123 V+TFW+WL+++ V++ K+P++ + EGLGLVA +DI++N+V+L+VP + WINPD VAAS Sbjct: 6 VQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAAS 65 Query: 124 EIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVEXXXXXX 183 EIG +CS LKPW+SV LFLIRE+ +EDS W+ Y ILP+ TDST++WSEEEL E Sbjct: 66 EIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQL 125 Query: 184 XXXXXXVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLV 243 VKEYV+NE LK+E+EIILPNK+LFP P+TLDDF WAFGILRSRAFSRLR +NLV Sbjct: 126 LKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLV 185 Query: 244 LIPLADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSN 302 ++P+ADLINHS G+TTED+AYE+KG AGLFS D LFSL++P+ VKAGEQV IQYDLNKSN Sbjct: 186 VVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSN 245 Query: 303 AELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPP 362 AELALDYGFIE +R+AYTLTLEISESDPFF DKLD+AE+NG ++AYFDI RTLPP Sbjct: 246 AELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP 305 Query: 363 AMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHT 422 +L YLRLVALGGTDAFLLES+FR+TIWGHL+L VS NEEL+C+ VR+ACKSAL+G+HT Sbjct: 306 GLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHT 365 Query: 423 TIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKXXXXXXXXXXXXXXXXXKDL 482 TIE+D + L+ GNLD RL IAVG+R GEK VLQQID IF+ KDL Sbjct: 366 TIEQDRE-LKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDL 424 Query: 483 GLVGEQGDII 492 GL GE GDI+ Sbjct: 425 GLCGENGDIL 434

PyMOL of 2h21

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310 Length = 449

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		497
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	1e-137
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	4e-90
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	6e-74
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	2e-04

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

 Score =  401 bits (1032), Expect = e-137
 Identities = 306/434 (70%), Positives = 374/434 (86%), Gaps = 2/434 (0%)

Query: 61  TAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTV 120
           +  V+TFW+WL+++ V++ K+P++ +   EGLGLVA +DI++N+V+L+VP + WINPD V
Sbjct: 3   SPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAV 62

Query: 121 AASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQG 180
           AASEIG +CS LKPW+SV LFLIRE+ +EDS W+ Y  ILP+ TDST++WSEEEL ELQG
Sbjct: 63  AASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQG 122

Query: 181 TQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQ 240
           +QLL TT+ VKEYV+NE LK+E+EIILPNK+LFP P+TLDDF WAFGILRSRAFSRLR +
Sbjct: 123 SQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNE 182

Query: 241 NLVLIPLADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDLN 299
           NLV++P+ADLINHS G+TTED+AYE+KG AGLFS D LFSL++P+ VKAGEQV IQYDLN
Sbjct: 183 NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 242

Query: 300 KSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRT 359
           KSNAELALDYGFIE   +R+AYTLTLEISESDPFF DKLD+AE+NG  ++AYFDI   RT
Sbjct: 243 KSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRT 302

Query: 360 LPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSG 419
           LPP +L YLRLVALGGTDAFLLES+FR+TIWGHL+L VS  NEEL+C+ VR+ACKSAL+G
Sbjct: 303 LPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAG 362

Query: 420 FHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRL 479
           +HTTIE+D +L + GNLD RL IAVG+R GEK VLQQID IF+++ELELD+LEYYQERRL
Sbjct: 363 YHTTIEQDRELKE-GNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRL 421

Query: 480 KDLGLVGEQGDIIF 493
           KDLGL GE GDI+ 
Sbjct: 422 KDLGLCGENGDILE 435

PyMOL of 2h21

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		497
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.24
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.23
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	99.14
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.7
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.15
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	96.75
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	96.63
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	96.62
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	96.58
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	96.57
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	96.38
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	95.77
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	95.76
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	95.71
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	95.65
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	95.62
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	95.27
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	95.2
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	94.63
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	91.28
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	90.17
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	90.05
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	89.46
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	87.41
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	82.28

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

Probab=100.00  E-value=1.8e-88  Score=717.75  Aligned_cols=433  Identities=70%  Similarity=1.185  Sum_probs=395.0

Q ss_pred             cchHHHHHHHhhCCCCCCCCCeeecccCCceEEEEccCCCCCcEEEEecCCcccCccccccchhhhhhcCCCchHHHHHH
Q 010945           62 AQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALF  141 (497)
Q Consensus        62 ~~~~~f~~Wl~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~~~l~~~~~~l~~~~~Lal~  141 (497)
                      +.+++|++|++++|+.++++.++....++||||+|+++|++||+|++||.+++||.+++..+.+++++.++++|..|+++
T Consensus         4 ~~~~~f~~W~~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~~~~~~~~~~~~~~~~Lal~   83 (440)
T 2h21_A            4 PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILF   83 (440)
T ss_dssp             HHHHHHHHHHHHTTSSCTTCSEEEEEETTEEEEEESSCBCTTEEEEEEEGGGCCSHHHHTTSTTHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCcCCceeeeccCCCCCEEEEcccCCCCCEEEEeChhHhccHHHhcchhHHHHHhccCcHHHHHHH
Confidence            88999999999999999887777766678999999999999999999999999999998777888888889999999999


Q ss_pred             HHHHhcCCCCCcHHHHhhcCCCCCCcccCCHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCHHH
Q 010945          142 LIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDD  221 (497)
Q Consensus       142 Ll~E~~~~~S~W~pYl~~LP~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~t~~~  221 (497)
                      |++|+.|+.|+|+||+++||+.+++|++|+++|++.|+||++...+.++++.++++|..+.+.++..+++.|+..+|+++
T Consensus        84 Ll~E~~g~~S~w~pYl~~LP~~~~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~t~~~  163 (440)
T 2h21_A           84 LIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDD  163 (440)
T ss_dssp             HHHHHHCTTCTTHHHHTTSCSCCSCTTTCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTCCSCCCHHH
T ss_pred             HHHHhcCCCCcHHHHHHhcCCCCCCcccCCHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhChhhCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999998888999999999988888889999988889999


Q ss_pred             HHHHHHHHHhcCcccCCCCceEEeeccccccCCCCCCCCCceeEecC-CCccCCCceEEEEeCCCCCCCCEEEeccCCCC
Q 010945          222 FLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNK  300 (497)
Q Consensus       222 f~WA~~iv~SRaf~~~~g~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~-~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~~~  300 (497)
                      |.||+++|+||+|+..+++..+|||++||+||+++++..++.|++++ +|.+++++++++++.++|++||||||+||+ +
T Consensus       164 f~wA~~~v~SRaf~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~-~  242 (440)
T 2h21_A          164 FFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDL-N  242 (440)
T ss_dssp             HHHHHHHHHHHCBCCC---CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCT-T
T ss_pred             HHHHHHHhcccceeccCCCceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCC-C
Confidence            99999999999998777888999999999999998765567788765 566666789999999999999999999997 7


Q ss_pred             -ChHHHHHhCCCCCCCCCCCeEEEEeecCCCCcChhcHHHHHHHCCCCCceEEEeecCCCCCHHHHHHHHHHhcCCCcHH
Q 010945          301 -SNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAF  379 (497)
Q Consensus       301 -sN~~LL~~YGFv~~~N~~D~v~l~l~~~~~d~~~~~k~~il~~~gl~~~~~f~i~~~~~~~~~ll~~lRl~~~~~~e~~  379 (497)
                       +|++||++|||++++||+|.+.|.++++.+|+++..|+++++.+|+.....|.+..++++|+++++++|+++++++|..
T Consensus       243 ~~N~~LL~~YGFv~~~n~~d~~~l~l~~~~~d~~~~~k~~~l~~~gl~~~~~f~i~~~~~~~~~ll~~lR~l~~~~~~~~  322 (440)
T 2h21_A          243 KSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAF  322 (440)
T ss_dssp             CCHHHHHHHSSCCCSCGGGCEEEEEEECCTTSTTHHHHHHHHHTTTCCSEEEEEEETTSCCCTTHHHHHHHHHCCGGGGG
T ss_pred             CCHHHHHHhCCCCcCCCCCCeEEEEeecCCccccHHHHHHHHHHcCCCCCceEEeecCCCCCHHHHHHHHHHhCChhhHH
Confidence             9999999999999999999999999999999999999999999999988899999888899999999999999998877


Q ss_pred             HHHHHHhccccCCCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 010945          380 LLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDE  459 (497)
Q Consensus       380 ~l~~~~~~~~~g~~~~p~s~~nE~~~~~~L~~~~~~~L~~y~tTieeD~~~L~~~~~~~r~~~A~~~R~~EK~IL~~~~~  459 (497)
                      .+++++++..||+...|+|.+||.+++++|.+.|+.+|++|+||+++|+++ .++..+.|+++|+++|++||+||+++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~s~~~E~~~~~~L~~~~~~~L~~y~TtieeD~~l-~~~~~~~r~~~A~~~R~~EK~iL~~~~~  401 (440)
T 2h21_A          323 LLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDREL-KEGNLDSRLAIAVGIREGEKMVLQQIDG  401 (440)
T ss_dssp             GGSGGGTTTHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhccccCCCChhHHHHHHHHHHHHHHHHHHhCCCcHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777776777767789999999999999999999999999999999998 7778889999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhHHHhhccccCCcCCCCceeeccc
Q 010945          460 IFKERELELDELEYYQERRLKDLGLVGEQGDIIFWEP  496 (497)
Q Consensus       460 ~l~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~  496 (497)
                      +++++...|+.++|||||+|||+||+|+||+|+||..
T Consensus       402 ~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~~~~~  438 (440)
T 2h21_A          402 IFEQKELELDQLEYYQERRLKDLGLCGENGDILENLY  438 (440)
T ss_dssp             HHHHHHHTTTTSCCHHHHHHTTCCCSSCCHHHHHTTC
T ss_pred             HHHHHHHHhhhhhHHHHhhcccCCCCCCCCCcccCcc
Confidence            9999999999999999999999999999999999974

PyMOL of 2h21

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		497
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	6e-74
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	5e-69

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  232 bits (592), Expect = 6e-74
 Identities = 177/260 (68%), Positives = 223/260 (85%), Gaps = 1/260 (0%)

Query: 61  TAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTV 120
           +  V+TFW+WL+++ V++ K+P++ +   EGLGLVA +DI++N+V+L+VP + WINPD V
Sbjct: 2   SPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAV 61

Query: 121 AASEIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQG 180
           AASEIG +CS LKPW+SV LFLIRE+ +EDS W+ Y  ILP+ TDST++WSEEEL ELQG
Sbjct: 62  AASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQG 121

Query: 181 TQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQ 240
           +QLL TT+ VKEYV+NE LK+E+EIILPNK+LFP P+TLDDF WAFGILRSRAFSRLR +
Sbjct: 122 SQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNE 181

Query: 241 NLVLIPLADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDLN 299
           NLV++P+ADLINHS G+TTED+AYE+KG AGLFS D LFSL++P+ VKAGEQV IQYDLN
Sbjct: 182 NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 241

Query: 300 KSNAELALDYGFIESKSDRN 319
           KSNAELALDYGFIE   +R+
Sbjct: 242 KSNAELALDYGFIEPNENRH 261

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		497
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	100.0
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.59
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	97.08
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	96.21
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	95.99
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	90.32
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	86.69

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=5.1e-47  Score=369.85  Aligned_cols=257  Identities=68%  Similarity=1.185  Sum_probs=217.8

Q ss_pred             cchHHHHHHHhhCCCCCCCCCeeecccCCceEEEEccCCCCCcEEEEecCCcccCccccccchhhhhhcCCCchHHHHHH
Q 010945           62 AQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPWISVALF  141 (497)
Q Consensus        62 ~~~~~f~~Wl~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~~~l~~~~~~l~~~~~Lal~  141 (497)
                      ++++.|++|++++|+..+++.+.....+.||||+|+++|++||+|++||..++|+.+++..+.+++.+....++..++++
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~~~~~~~~~~~~~~~l~~~   82 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILF   82 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTSGGGTTTTTSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhhHHHHHHhhcCcHHHHHHH
Confidence            57899999999999999886555444456999999999999999999999999999988777788777778899999999


Q ss_pred             HHHHhcCCCCCcHHHHhhcCCCCCCcccCCHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCHHH
Q 010945          142 LIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFPRPITLDD  221 (497)
Q Consensus       142 Ll~E~~~~~S~W~pYl~~LP~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~t~~~  221 (497)
                      |++|+.+..|.|+||++.||+.+++|++|+.+++..|+++.+...+....+.++.+|.++...++...++.++..++++.
T Consensus        83 l~~e~~~~~s~~~~y~~~lp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (261)
T d2h2ja2          83 LIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDD  162 (261)
T ss_dssp             HHHHHHCTTCTTHHHHTTSCSCCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCSCCCHHH
T ss_pred             HHHHHhCCCCchhhhhhccccccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCHHH
Confidence            99999999999999999999999999999999999999999999998888889999999887777777777777889999


Q ss_pred             HHHHHHHHHhcCcccCCCCceEEeeccccccCCCCCCCCCceeEecC-CCccCCCceEEEEeCCCCCCCCEEEeccCCCC
Q 010945          222 FLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNK  300 (497)
Q Consensus       222 f~WA~~iv~SRaf~~~~g~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~-~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~~~  300 (497)
                      |.||+++|.||+|...+....+|+|++||+||++.++......+..+ ++....++.++++|.++|++||||||+||+++
T Consensus       163 ~~~a~~~v~sr~~~~~~~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~~  242 (261)
T d2h2ja2         163 FFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK  242 (261)
T ss_dssp             HHHHHHHHHHHSBCCC---CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEECSCSSC
T ss_pred             HHHHHHHhhcccccccccccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEEEecCCCC
Confidence            99999999999998777677899999999999999865222222111 22333467899999999999999999999657


Q ss_pred             ChHHHHHhCCCCCCC-CCC
Q 010945          301 SNAELALDYGFIESK-SDR  318 (497)
Q Consensus       301 sN~~LL~~YGFv~~~-N~~  318 (497)
                      +|++||++||||+++ |||
T Consensus       243 ~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         243 SNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             CHHHHHHHSSCCCSCGGGC
T ss_pred             CHHHHHHhCCCCCCCCCCC
Confidence            999999999999876 886

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure